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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Genet.</journal-id>
<journal-title>Frontiers in Genetics</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Genet.</abbrev-journal-title>
<issn pub-type="epub">1664-8021</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fgene.2020.540724</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Genetics</subject>
<subj-group>
<subject>Brief Research Report</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The Role of Genetically Determined Glycemic Traits in Breast Cancer: A Mendelian Randomization Study</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Jung</surname> <given-names>Su Yon</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/74747/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Mancuso</surname> <given-names>Nicholas</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/1008024/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Han</surname> <given-names>Sihao</given-names></name>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/948557/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Zhang</surname> <given-names>Zuo-Feng</given-names></name>
<xref ref-type="aff" rid="aff5"><sup>5</sup></xref>
<xref ref-type="aff" rid="aff6"><sup>6</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/34526/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Translational Sciences Section, Jonsson Comprehensive Cancer Center, School of Nursing, University of California, Los Angeles, Los Angeles</institution>, <addr-line>CA</addr-line>, <country>United States</country></aff>
<aff id="aff2"><sup>2</sup><institution>Division of Biostatistics, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles</institution>, <addr-line>CA</addr-line>, <country>United States</country></aff>
<aff id="aff3"><sup>3</sup><institution>Center for Genetic Epidemiology, Keck School of Medicine, University of Southern California, Los Angeles</institution>, <addr-line>CA</addr-line>, <country>United States</country></aff>
<aff id="aff4"><sup>4</sup><institution>Norris Comprehensive Cancer Center, University of Southern California, Los Angeles</institution>, <addr-line>CA</addr-line>, <country>United States</country></aff>
<aff id="aff5"><sup>5</sup><institution>Department of Epidemiology, Fielding School of Public Health, University of California, Los Angeles, Los Angeles</institution>, <addr-line>CA</addr-line>, <country>United States</country></aff>
<aff id="aff6"><sup>6</sup><institution>Center for Human Nutrition, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles</institution>, <addr-line>CA</addr-line>, <country>United States</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Cheryl Ann Winkler, Frederick National Laboratory for Cancer Research (NIH), United States</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Jing Dong, Baylor College of Medicine, United States; Sarah Buxbaum, Jackson State University, United States</p></fn>
<corresp id="c001">&#x002A;Correspondence: Su Yon Jung, <email>sjung@sonnet.ucla.edu</email>; <email>suyonj@gmail.com</email></corresp>
<fn fn-type="other" id="fn004"><p>This article was submitted to Applied Genetic Epidemiology, a section of the journal Frontiers in Genetics</p></fn>
</author-notes>
<pub-date pub-type="epub">
<day>16</day>
<month>09</month>
<year>2020</year>
</pub-date>
<pub-date pub-type="collection">
<year>2020</year>
</pub-date>
<volume>11</volume>
<elocation-id>540724</elocation-id>
<history>
<date date-type="received">
<day>05</day>
<month>03</month>
<year>2020</year>
</date>
<date date-type="accepted">
<day>18</day>
<month>08</month>
<year>2020</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2020 Jung, Mancuso, Han and Zhang.</copyright-statement>
<copyright-year>2020</copyright-year>
<copyright-holder>Jung, Mancuso, Han and Zhang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<sec><title>Background</title>
<p>Circulating glycemic traits (GTs) have been considered a risk factor for breast cancer, but studies using GT-associated genetic variants as an instrumental variable are limited and inconclusive.</p></sec>
<sec><title>Methods</title>
<p>Our Mendelian Randomization analysis used the most recent genome-wide datasets focusing on European women.</p></sec>
<sec><title>Results</title>
<p>Of 44 single-nucleotide polymorphisms (SNPs) with GTs, 38 fasting-glucose and 6 fasting-insulin SNPs showed heterogeneous associations with breast cancer, without significant directional pleiotropy observed.</p></sec>
<sec><title>Conclusion</title>
<p>Our findings indicate a null association between genetically determined GTs and breast cancer risk among European women. Our findings may contribute to more complete characterizing of metabolic pathways in GTs and breast cancer.</p></sec>
</abstract>
<kwd-group>
<kwd>genetically determined glucose and insulin</kwd>
<kwd>breast cancer</kwd>
<kwd>Mendelian randomization</kwd>
<kwd>obesity</kwd>
<kwd>diabetes</kwd>
</kwd-group>
<contract-sponsor id="cn001">National Institutes of Health<named-content content-type="fundref-id">10.13039/100000002</named-content></contract-sponsor>
<counts>
<fig-count count="1"/>
<table-count count="3"/>
<equation-count count="2"/>
<ref-count count="8"/>
<page-count count="6"/>
<word-count count="0"/>
</counts>
</article-meta>
</front>
<body>
<sec id="S1">
<title>Introduction</title>
<p>Previous studies for circulating glycemic traits (GTs), including fasting glucose (FG) and insulin (FI) concentrations, have shown inconsistent associations with breast cancer development (<xref ref-type="bibr" rid="B3">Gunter et al., 2009</xref>; <xref ref-type="bibr" rid="B7">Sieri et al., 2012</xref>; <xref ref-type="bibr" rid="B1">Boyle et al., 2013</xref>; <xref ref-type="bibr" rid="B4">Hernandez et al., 2014</xref>). This is partially due to selection bias, confounding, short time exposure to such metabolic biomarkers, measurement errors, and reverse causation. We tried to address those challenges by using a 2-sample Mendelian Randomization (MR) approach and examined whether genetically determined GTs are causally associated with breast cancer risk. The MR method may provide a relatively unbiased causal relationship between phenotype and cancer outcome because it reduces potential bias and confounding and prevents reverse causation by the random assortment of alleles at meiosis, resulting in random assignment of exposure, which precedes the phenotype and clinical outcomes (<xref ref-type="bibr" rid="B5">Merino et al., 2017</xref>).</p>
</sec>
<sec id="S2" sec-type="materials|methods">
<title>Materials and Methods</title>
<p>For the GT instrumental variables, we used the recently updated publicly available data in 2019 from genome-wide association studies (GWASs) of the Meta-Analysis of Glucose and Insulin-related traits Consortium (MAGIC) in non-diabetic European women<sup><xref ref-type="fn" rid="footnote1">1</xref></sup>. Detailed rationale and design of the studies have been described elsewhere (<xref ref-type="bibr" rid="B6">Scott et al., 2012</xref>). For breast cancer outcomes, we pulled 4 datasets from 2 independent consortia: Breast Cancer Association Consortium (BCAC<sup><xref ref-type="fn" rid="footnote2">2</xref></sup>): (i) OncoArray; the Atlas of GWAS Summary Statistics (ATLAS<sup><xref ref-type="fn" rid="footnote3">3</xref></sup>): (ii) CGEMS Breast Cancer GWAS, (iii) GEE adjusted for age, and (iv) GEE for age and body mass index. Study participants from each dataset provided written informed consent. Genetic instruments for each dataset were single-nucleotide polymorphisms (SNPs) associated with the trait at the genome-wide level (p &#x003C; 5E-08).</p>
<p>We performed MR analysis using the inverse-variance weighted method (<xref ref-type="bibr" rid="B2">Burgess et al., 2013</xref>) which quantifies the genetically determined association between GTs and breast cancer risk. We assume that summarized data are available for multiple genetic variants in relation to the risk factor of interest X and the outcome Y; genetic variant k, k = 1,&#x2026;, K is associated with an observed X<sub>k</sub> mean change in the risk factor per additional variant allele with standard error &#x03C3;<sub>Xk</sub> and an observed Y<sub>k</sub> changes in the log-odds or the log-probability of an outcome per allele with standard error &#x03C3;<sub>Yk</sub>. The inverse-variance weighted estimates combine the ratio estimates from each variant in a fixed-effect meta-analysis model:</p>
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<mml:mrow>
<mml:mo>-</mml:mo>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
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<mml:mo largeop="true" symmetric="true">&#x2211;</mml:mo>
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<mml:mo>&#x2062;</mml:mo>
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<mml:mi mathvariant="normal">&#x03C3;</mml:mi>
<mml:mrow>
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<mml:mo>&#x2062;</mml:mo>
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<mml:mrow>
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</mml:mrow>
</mml:mrow>
</mml:mfrac>
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<p>The approximate standard error of the estimate is:</p>
<disp-formula id="S2.Ex2">
<mml:math id="M2">
<mml:mrow>
<mml:mi>s</mml:mi>
<mml:mi>e</mml:mi>
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</disp-formula>
<p>The results were reported as risk ratios and 95% confidence intervals for the change in breast cancer risk per unit increase in FG (mmol/L) or natural log-transformed FI (pmol/L). To determine the extent of pleiotropic signal, we applied Cochran&#x2019;s Q test and the MR-Egger analysis. Given obesity and diabetes&#x2019;s established role for breast cancer, we excluded those relevant SNPs from the analysis. R3.6.1 was used. The Institutional Review Board of the University of California, Los Angeles, approved this study.</p>
</sec>
<sec id="S3">
<title>Results and Discussion</title>
<p>Of 430 GWA-based SNPs related to GTs in MAGIC, 44 SNPs within linkage disequilibrium (<italic>r</italic><sup>2</sup> &#x003C; 0.1) were matched to either BCAC or ATLAS datasets (<xref ref-type="table" rid="T1">Table 1</xref>). The 38 FG-SNPs overall and stratified by cancer data source showed heterogeneous results but mostly showed a slightly increased effect on breast cancer risk without reaching statistical significance (<xref ref-type="table" rid="T2">Table 2</xref> and <xref ref-type="fig" rid="F1">Figure 1</xref>). After excluding top GWA-SNPs associated with type 2 diabetes and visceral obesity, the directions of the associations between GTs and breast cancer were changed in <italic>OncoArray</italic> but not in <italic>ATLAS-CGEMS.</italic> The 6 FI-SNPs showed similar patterns for the associations with breast cancer. No significant directional pleiotropy was observed (<xref ref-type="table" rid="T3">Table 3</xref>).</p>
<table-wrap position="float" id="T1">
<label>TABLE 1</label>
<caption><p>Top GWA SNPs associated with glucose-metabolism phenotypes and breast cancer risk.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">Gene&#x002A;</td>
<td valign="top" align="left">SNP</td>
<td valign="top" align="center">Chr</td>
<td valign="top" align="left">Position</td>
<td valign="top" align="center">Allele</td>
<td valign="top" align="left">Alt allele frequency</td>
<td valign="top" align="center" colspan="2">Phenotype<sup>&#x2020;</sup></td>
<td valign="top" align="center" colspan="3">Breast cancer&#x00A5;</td>
</tr>
<tr>
<td valign="top" align="center"></td>
<td valign="top" align="center"></td>
<td valign="top" align="center"></td>
<td valign="top" align="center"></td>
<td valign="top" align="center"><hr/></td>
<td valign="top" align="center"></td>
<td valign="top" align="center" colspan="2"><hr/></td>
<td valign="top" align="center" colspan="3"><hr/></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="center">Ref/Alt</td>
<td valign="top" align="justify"/>
<td valign="top" align="right">Effect size</td>
<td valign="top" align="center">p</td>
<td valign="top" align="center">OR</td>
<td valign="top" align="center">95% CI</td>
<td valign="top" align="center">p</td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left" colspan="10"><bold>Fasting glucose Breast cancer: OncoArray</bold></td>
<td/>
</tr>
<tr>
<td valign="top" align="left">PROX1</td>
<td valign="top" align="left"><bold>rs340874</bold></td>
<td valign="top" align="center"><bold>1</bold></td>
<td valign="top" align="left"><bold>214159256</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.562</td>
<td valign="top" align="right"><bold>0.020</bold></td>
<td valign="top" align="center"><bold>1.69E-13</bold></td>
<td valign="top" align="center"><bold>0.982</bold></td>
<td valign="top" align="center"><bold>(0.969&#x2013;0.994)</bold></td>
<td valign="top" align="right"><bold>0.004</bold></td>
</tr>
<tr>
<td valign="top" align="left">G6PC2</td>
<td valign="top" align="left"><bold>rs560887</bold></td>
<td valign="top" align="center"><bold>2</bold></td>
<td valign="top" align="left"><bold>169763148</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.674</td>
<td valign="top" align="right"><bold>0.067</bold></td>
<td valign="top" align="center"><bold>8.08E-92</bold></td>
<td valign="top" align="center">0.994</td>
<td valign="top" align="center">(0.980&#x2013;1.008)</td>
<td valign="top" align="right">0.389</td>
</tr>
<tr>
<td valign="top" align="left">GCKR</td>
<td valign="top" align="left"><bold>rs780094</bold></td>
<td valign="top" align="center"><bold>2</bold></td>
<td valign="top" align="left"><bold>27741237</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.606</td>
<td valign="top" align="right"><bold>0.031</bold></td>
<td valign="top" align="center"><bold>3.06E-26</bold></td>
<td valign="top" align="center">1.012</td>
<td valign="top" align="center">(0.999&#x2013;1.024)</td>
<td valign="top" align="right">0.070</td>
</tr>
<tr>
<td valign="top" align="left">ADCY5</td>
<td valign="top" align="left"><bold>rs11708067</bold></td>
<td valign="top" align="center"><bold>3</bold></td>
<td valign="top" align="left"><bold>123065778</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.774</td>
<td valign="top" align="right"><bold>0.027</bold></td>
<td valign="top" align="center"><bold>5.01E-16</bold></td>
<td valign="top" align="center">1.004</td>
<td valign="top" align="center">(0.989&#x2013;1.018)</td>
<td valign="top" align="right">0.644</td>
</tr>
<tr>
<td valign="top" align="left">SLC2A2</td>
<td valign="top" align="left"><bold>rs11924648</bold></td>
<td valign="top" align="center"><bold>3</bold></td>
<td valign="top" align="left"><bold>170717996</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.863</td>
<td valign="top" align="right"><bold>0.029</bold></td>
<td valign="top" align="center"><bold>1.74E-11</bold></td>
<td valign="top" align="center">0.985</td>
<td valign="top" align="center">(0.968&#x2013;1.003)</td>
<td valign="top" align="right">0.104</td>
</tr>
<tr>
<td valign="top" align="left">PCSK1</td>
<td valign="top" align="left"><bold>rs7713317</bold></td>
<td valign="top" align="center"><bold>5</bold></td>
<td valign="top" align="left"><bold>95716722</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.695</td>
<td valign="top" align="right"><bold>0.023</bold></td>
<td valign="top" align="center"><bold>6.50E-14</bold></td>
<td valign="top" align="center">0.995</td>
<td valign="top" align="center">(0.981&#x2013;1.009)</td>
<td valign="top" align="right">0.476</td>
</tr>
<tr>
<td valign="top" align="left">AC006045.3</td>
<td valign="top" align="left"><bold>rs1558318</bold></td>
<td valign="top" align="center"><bold>7</bold></td>
<td valign="top" align="left"><bold>15065612</bold></td>
<td valign="top" align="center"><bold>T/A</bold></td>
<td valign="top" align="left">0.545</td>
<td valign="top" align="right">&#x2212;<bold>0.028</bold></td>
<td valign="top" align="center"><bold>2.93E-20</bold></td>
<td valign="top" align="center">1.003</td>
<td valign="top" align="center">(0.991&#x2013;1.016)</td>
<td valign="top" align="right">0.595</td>
</tr>
<tr>
<td valign="top" align="left">GCK</td>
<td valign="top" align="left"><bold>rs4607517</bold></td>
<td valign="top" align="center"><bold>7</bold></td>
<td valign="top" align="left"><bold>44235668</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.195</td>
<td valign="top" align="right"><bold>0.058</bold></td>
<td valign="top" align="center"><bold>2.66E-46</bold></td>
<td valign="top" align="center">1.000</td>
<td valign="top" align="center">(0.982&#x2013;1.017)</td>
<td valign="top" align="right">0.959</td>
</tr>
<tr>
<td valign="top" align="left">SLC30A8</td>
<td valign="top" align="left"><bold>rs3802177</bold></td>
<td valign="top" align="center"><bold>8</bold></td>
<td valign="top" align="left"><bold>118185025</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.239</td>
<td valign="top" align="right">&#x2212;<bold>0.034</bold></td>
<td valign="top" align="center"><bold>1.12E-27</bold></td>
<td valign="top" align="center"><bold>0.984</bold></td>
<td valign="top" align="center"><bold>(0.971&#x2013;0.997)</bold></td>
<td valign="top" align="right"><bold>0.016</bold></td>
</tr>
<tr>
<td valign="top" align="left">PPP1R3B</td>
<td valign="top" align="left"><bold>rs983309</bold></td>
<td valign="top" align="center"><bold>8</bold></td>
<td valign="top" align="left"><bold>9177732</bold></td>
<td valign="top" align="center"><bold>T/G</bold></td>
<td valign="top" align="left">0.903</td>
<td valign="top" align="right">&#x2212;<bold>0.032</bold></td>
<td valign="top" align="center"><bold>4.85E-13</bold></td>
<td valign="top" align="center"><bold>1.020</bold></td>
<td valign="top" align="center"><bold>(1.000&#x2013;1.040)</bold></td>
<td valign="top" align="right"><bold>0.050</bold></td>
</tr>
<tr>
<td valign="top" align="left">GLIS3</td>
<td valign="top" align="left"><bold>rs10814916</bold></td>
<td valign="top" align="center"><bold>9</bold></td>
<td valign="top" align="left"><bold>4293150</bold></td>
<td valign="top" align="center"><bold>C/A</bold></td>
<td valign="top" align="left">0.434</td>
<td valign="top" align="right">&#x2212;<bold>0.019</bold></td>
<td valign="top" align="center"><bold>7.61E-10</bold></td>
<td valign="top" align="center">1.006</td>
<td valign="top" align="center">(0.993&#x2013;1.019)</td>
<td valign="top" align="right">0.372</td>
</tr>
<tr>
<td valign="top" align="left">CDKN2B-AS1</td>
<td valign="top" align="left"><bold>rs2383208</bold></td>
<td valign="top" align="center"><bold>9</bold></td>
<td valign="top" align="left"><bold>22132076</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.792</td>
<td valign="top" align="right"><bold>0.026</bold></td>
<td valign="top" align="center"><bold>1.19E-13</bold></td>
<td valign="top" align="center">0.986</td>
<td valign="top" align="center">(0.970&#x2013;1.001)</td>
<td valign="top" align="right">0.070</td>
</tr>
<tr>
<td valign="top" align="left">ADRA2A</td>
<td valign="top" align="left"><bold>rs11195502</bold></td>
<td valign="top" align="center"><bold>10</bold></td>
<td valign="top" align="left"><bold>113039667</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.925</td>
<td valign="top" align="right"><bold>0.035</bold></td>
<td valign="top" align="center"><bold>7.41E-12</bold></td>
<td valign="top" align="center">1.020</td>
<td valign="top" align="center">(0.998&#x2013;1.042)</td>
<td valign="top" align="right">0.080</td>
</tr>
<tr>
<td valign="top" align="left">TMEM258</td>
<td valign="top" align="left"><bold>rs102275</bold></td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>61557803</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.351</td>
<td valign="top" align="right">&#x2212;<bold>0.019</bold></td>
<td valign="top" align="center"><bold>1.01E-09</bold></td>
<td valign="top" align="center">0.993</td>
<td valign="top" align="center">(0.981&#x2013;1.006)</td>
<td valign="top" align="right">0.292</td>
</tr>
<tr>
<td valign="top" align="left">MTNR1B</td>
<td valign="top" align="left"><bold>rs10830963</bold></td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>92708710</bold></td>
<td valign="top" align="center"><bold>G/C</bold></td>
<td valign="top" align="left">0.700</td>
<td valign="top" align="right">&#x2212;<bold>0.074</bold></td>
<td valign="top" align="center"><bold>1.36E-98</bold></td>
<td valign="top" align="center">0.992</td>
<td valign="top" align="center">(0.978&#x2013;1.007)</td>
<td valign="top" align="right">0.284</td>
</tr>
<tr>
<td valign="top" align="left">CTD-2210P24.6</td>
<td valign="top" align="left"><bold>rs6485644</bold></td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>45855998</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.531</td>
<td valign="top" align="right"><bold>0.019</bold></td>
<td valign="top" align="center"><bold>1.39E-10</bold></td>
<td valign="top" align="center">0.991</td>
<td valign="top" align="center">(0.979&#x2013;1.003)</td>
<td valign="top" align="right">0.154</td>
</tr>
<tr>
<td valign="top" align="left">MADD</td>
<td valign="top" align="left"><bold>rs7944584</bold></td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>47336320</bold></td>
<td valign="top" align="center"><bold>T/A</bold></td>
<td valign="top" align="left">0.712</td>
<td valign="top" align="right"><bold>0.024</bold></td>
<td valign="top" align="center"><bold>2.20E-12</bold></td>
<td valign="top" align="center"><bold>1.031</bold></td>
<td valign="top" align="center"><bold>(1.016&#x2013;1.045)</bold></td>
<td valign="top" align="right">&#x003C;<bold>0.001</bold></td>
</tr>
<tr>
<td valign="top" align="left">PDX1</td>
<td valign="top" align="left"><bold>rs11619319</bold></td>
<td valign="top" align="center"><bold>13</bold></td>
<td valign="top" align="left"><bold>28487599</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.788</td>
<td valign="top" align="right">&#x2212;<bold>0.021</bold></td>
<td valign="top" align="center"><bold>9.26E-10</bold></td>
<td valign="top" align="center">1.003</td>
<td valign="top" align="center">(0.989&#x2013;1.018)</td>
<td valign="top" align="right">0.662</td>
</tr>
<tr>
<td valign="top" align="left">VPS13C/C2CD4A/B</td>
<td valign="top" align="left"><bold>rs4502156</bold></td>
<td valign="top" align="center"><bold>15</bold></td>
<td valign="top" align="left"><bold>62383155</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.420</td>
<td valign="top" align="right">&#x2212;<bold>0.023</bold></td>
<td valign="top" align="center"><bold>3.07E-15</bold></td>
<td valign="top" align="center"><bold>1.016</bold></td>
<td valign="top" align="center"><bold>(1.003&#x2013;1.030)</bold></td>
<td valign="top" align="right"><bold>0.014</bold></td>
</tr>
<tr>
<td valign="top" align="left" colspan="10"><bold>FG, Breast cancer: ATLAS-CGEMS</bold></td>
<td/>
</tr>
<tr>
<td valign="top" align="left">PROX1</td>
<td valign="top" align="left">rs340874</td>
<td valign="top" align="center"><bold>1</bold></td>
<td valign="top" align="left"><bold>214159255</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.562</td>
<td valign="top" align="right"><bold>0.020</bold></td>
<td valign="top" align="center"><bold>1.69E-13</bold></td>
<td valign="top" align="center">0.991</td>
<td valign="top" align="center">(0.819&#x2013;1.198)</td>
<td valign="top" align="right">0.913</td>
</tr>
<tr>
<td valign="top" align="left">G6PC2</td>
<td valign="top" align="left">rs560887</td>
<td valign="top" align="center"><bold>2</bold></td>
<td valign="top" align="left"><bold>169763147</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.674</td>
<td valign="top" align="right"><bold>0.067</bold></td>
<td valign="top" align="center"><bold>8.08E-92</bold></td>
<td valign="top" align="center">1.006</td>
<td valign="top" align="center">(0.846&#x2013;1.196)</td>
<td valign="top" align="right">0.745</td>
</tr>
<tr>
<td valign="top" align="left">GCKR</td>
<td valign="top" align="left">rs780094</td>
<td valign="top" align="center"><bold>2</bold></td>
<td valign="top" align="left"><bold>27741236</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.606</td>
<td valign="top" align="right"><bold>0.031</bold></td>
<td valign="top" align="center"><bold>3.06E-26</bold></td>
<td valign="top" align="center">0.994</td>
<td valign="top" align="center">(0.828&#x2013;1.193)</td>
<td valign="top" align="right">0.983</td>
</tr>
<tr>
<td valign="top" align="left">RNU1-70P</td>
<td valign="top" align="left">rs11709140</td>
<td valign="top" align="center"><bold>3</bold></td>
<td valign="top" align="left"><bold>170694496</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.137</td>
<td valign="top" align="right">&#x2212;<bold>0.026</bold></td>
<td valign="top" align="center"><bold>1.90E-09</bold></td>
<td valign="top" align="center">0.937</td>
<td valign="top" align="center">(0.769&#x2013;1.140)</td>
<td valign="top" align="right">0.435</td>
</tr>
<tr>
<td valign="top" align="left">ADCY5</td>
<td valign="top" align="left">rs2877716</td>
<td valign="top" align="center"><bold>3</bold></td>
<td valign="top" align="left"><bold>123094450</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.752</td>
<td valign="top" align="right"><bold>0.023</bold></td>
<td valign="top" align="center"><bold>7.27E-11</bold></td>
<td valign="top" align="center">1.029</td>
<td valign="top" align="center">(0.865&#x2013;1.225)</td>
<td valign="top" align="right">0.919</td>
</tr>
<tr>
<td valign="top" align="left">PCSK1</td>
<td valign="top" align="left">rs4869272</td>
<td valign="top" align="center"><bold>5</bold></td>
<td valign="top" align="left"><bold>95539447</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.323</td>
<td valign="top" align="right">&#x2212;<bold>0.022</bold></td>
<td valign="top" align="center"><bold>1.64E-13</bold></td>
<td valign="top" align="center">1.070</td>
<td valign="top" align="center">(0.900&#x2013;1.272)</td>
<td valign="top" align="right">0.721</td>
</tr>
<tr>
<td valign="top" align="left">AC006045.3</td>
<td valign="top" align="left">rs2191348</td>
<td valign="top" align="center"><bold>7</bold></td>
<td valign="top" align="left"><bold>15064254</bold></td>
<td valign="top" align="center"><bold>T/G</bold></td>
<td valign="top" align="left">0.482</td>
<td valign="top" align="right">&#x2212;<bold>0.026</bold></td>
<td valign="top" align="center"><bold>2.56E-18</bold></td>
<td valign="top" align="center">1.000</td>
<td valign="top" align="center">(0.827&#x2013;1.208)</td>
<td valign="top" align="right">1.000</td>
</tr>
<tr>
<td valign="top" align="left">GCK</td>
<td valign="top" align="left">rs4607517</td>
<td valign="top" align="center"><bold>7</bold></td>
<td valign="top" align="left"><bold>44235667</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.195</td>
<td valign="top" align="right"><bold>0.058</bold></td>
<td valign="top" align="center"><bold>2.66E-46</bold></td>
<td valign="top" align="center">0.918</td>
<td valign="top" align="center">(0.762&#x2013;1.105)</td>
<td valign="top" align="right">0.207</td>
</tr>
<tr>
<td valign="top" align="left">SLC30A8</td>
<td valign="top" align="left">rs13266634</td>
<td valign="top" align="center"><bold>8</bold></td>
<td valign="top" align="left"><bold>118184782</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.761</td>
<td valign="top" align="right"><bold>0.030</bold></td>
<td valign="top" align="center"><bold>6.72E-21</bold></td>
<td valign="top" align="center">1.015</td>
<td valign="top" align="center">(0.852&#x2013;1.208)</td>
<td valign="top" align="right">0.467</td>
</tr>
<tr>
<td valign="top" align="left">PPP1R3B</td>
<td valign="top" align="left">rs983309</td>
<td valign="top" align="center"><bold>8</bold></td>
<td valign="top" align="left"><bold>9177731</bold></td>
<td valign="top" align="center"><bold>T/G</bold></td>
<td valign="top" align="left">0.903</td>
<td valign="top" align="right">&#x2212;<bold>0.032</bold></td>
<td valign="top" align="center"><bold>4.85E-13</bold></td>
<td valign="top" align="center">0.971</td>
<td valign="top" align="center">(0.783&#x2013;1.203)</td>
<td valign="top" align="right">0.937</td>
</tr>
<tr>
<td valign="top" align="left">GLIS3</td>
<td valign="top" align="left">rs10814916</td>
<td valign="top" align="center"><bold>9</bold></td>
<td valign="top" align="left"><bold>4293149</bold></td>
<td valign="top" align="center"><bold>C/A</bold></td>
<td valign="top" align="left">0.434</td>
<td valign="top" align="right">&#x2212;<bold>0.019</bold></td>
<td valign="top" align="center"><bold>7.61E-10</bold></td>
<td valign="top" align="center">0.999</td>
<td valign="top" align="center">(0.823&#x2013;1.213)</td>
<td valign="top" align="right">0.999</td>
</tr>
<tr>
<td valign="top" align="left">CDKN2B-AS1</td>
<td valign="top" align="left">rs2383208</td>
<td valign="top" align="center"><bold>9</bold></td>
<td valign="top" align="left"><bold>22132075</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.792</td>
<td valign="top" align="right"><bold>0.026</bold></td>
<td valign="top" align="center"><bold>1.19E-13</bold></td>
<td valign="top" align="center"><bold>1.065</bold></td>
<td valign="top" align="center"><bold>(0.886&#x2013;1.278)</bold></td>
<td valign="top" align="right"><bold>0.039</bold></td>
</tr>
<tr>
<td valign="top" align="left">BTBD7P2</td>
<td valign="top" align="left">rs4258313</td>
<td valign="top" align="center"><bold>10</bold></td>
<td valign="top" align="left"><bold>113032397</bold></td>
<td valign="top" align="center"><bold>T/G</bold></td>
<td valign="top" align="left">0.914</td>
<td valign="top" align="right"><bold>0.037</bold></td>
<td valign="top" align="center"><bold>1.82E-11</bold></td>
<td valign="top" align="center">1.027</td>
<td valign="top" align="center">(0.827&#x2013;1.275)</td>
<td valign="top" align="right">0.625</td>
</tr>
<tr>
<td valign="top" align="left">TMEM258</td>
<td valign="top" align="left">rs102275</td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>61557802</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.351</td>
<td valign="top" align="right">&#x2212;<bold>0.019</bold></td>
<td valign="top" align="center"><bold>1.01E-09</bold></td>
<td valign="top" align="center">1.029</td>
<td valign="top" align="center">(0.865&#x2013;1.225)</td>
<td valign="top" align="right">0.768</td>
</tr>
<tr>
<td valign="top" align="left">CRY2</td>
<td valign="top" align="left">rs11607883</td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>45839708</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.469</td>
<td valign="top" align="right">&#x2212;<bold>0.018</bold></td>
<td valign="top" align="center"><bold>1.86E-10</bold></td>
<td valign="top" align="center">1.006</td>
<td valign="top" align="center">(0.829&#x2013;1.219)</td>
<td valign="top" align="right">0.967</td>
</tr>
<tr>
<td valign="top" align="left">ACP2</td>
<td valign="top" align="left">rs11988</td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>47261259</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.372</td>
<td valign="top" align="right">&#x2212;<bold>0.021</bold></td>
<td valign="top" align="center"><bold>5.07E-12</bold></td>
<td valign="top" align="center">0.916</td>
<td valign="top" align="center">(0.765&#x2013;1.095)</td>
<td valign="top" align="right">0.412</td>
</tr>
<tr>
<td valign="top" align="left">MTNR1B</td>
<td valign="top" align="left">rs1387153</td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>92673827</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.728</td>
<td valign="top" align="right">&#x2212;<bold>0.054</bold></td>
<td valign="top" align="center"><bold>1.27E-58</bold></td>
<td valign="top" align="center">0.954</td>
<td valign="top" align="center">(0.803&#x2013;1.134)</td>
<td valign="top" align="right">0.619</td>
</tr>
<tr>
<td valign="top" align="left">PDX1-AS1</td>
<td valign="top" align="left">rs2293941</td>
<td valign="top" align="center"><bold>13</bold></td>
<td valign="top" align="left"><bold>28491197</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.212</td>
<td valign="top" align="right"><bold>0.021</bold></td>
<td valign="top" align="center"><bold>1.42E-09</bold></td>
<td valign="top" align="center">1.101</td>
<td valign="top" align="center">(0.923&#x2013;1.312)</td>
<td valign="top" align="right">0.470</td>
</tr>
<tr>
<td valign="top" align="left">NPM1P47</td>
<td valign="top" align="left">rs7172432</td>
<td valign="top" align="center"><bold>15</bold></td>
<td valign="top" align="left"><bold>62396388</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.580</td>
<td valign="top" align="right"><bold>0.023</bold></td>
<td valign="top" align="center"><bold>3.15E-11</bold></td>
<td valign="top" align="center">0.888</td>
<td valign="top" align="center">(0.739&#x2013;1.068)</td>
<td valign="top" align="right">0.448</td>
</tr>
<tr>
<td valign="top" align="left" colspan="10"><bold>FG, Breast cancer: ATLAS-GEEA</bold></td>
<td/>
</tr>
<tr>
<td valign="top" align="left">PROX1-AS1</td>
<td valign="top" align="left">rs1431985</td>
<td valign="top" align="center"><bold>1</bold></td>
<td valign="top" align="left"><bold>214148245</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.327</td>
<td valign="top" align="right">&#x2212;<bold>0.019</bold></td>
<td valign="top" align="center"><bold>1.15E-09</bold></td>
<td valign="top" align="center">0.989</td>
<td valign="top" align="center">(0.964&#x2013;1.016)</td>
<td valign="top" align="right">0.427</td>
</tr>
<tr>
<td valign="top" align="left">SNX17</td>
<td valign="top" align="left">rs1528533</td>
<td valign="top" align="center"><bold>2</bold></td>
<td valign="top" align="left"><bold>27595755</bold></td>
<td valign="top" align="center"><bold>G/C</bold></td>
<td valign="top" align="left">0.458</td>
<td valign="top" align="right"><bold>0.018</bold></td>
<td valign="top" align="center"><bold>5.29E-09</bold></td>
<td valign="top" align="center">0.988</td>
<td valign="top" align="center">(0.962&#x2013;1.016)</td>
<td valign="top" align="right">0.406</td>
</tr>
<tr>
<td valign="top" align="left">ABCB11</td>
<td valign="top" align="left">rs494874</td>
<td valign="top" align="center"><bold>2</bold></td>
<td valign="top" align="left"><bold>169789305</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.628</td>
<td valign="top" align="right"><bold>0.053</bold></td>
<td valign="top" align="center"><bold>1.82E-68</bold></td>
<td valign="top" align="center">1.004</td>
<td valign="top" align="center">(0.976&#x2013;1.034)</td>
<td valign="top" align="right">0.771</td>
</tr>
<tr>
<td valign="top" align="left">SLC2A2</td>
<td valign="top" align="left">rs10513686</td>
<td valign="top" align="center"><bold>3</bold></td>
<td valign="top" align="left"><bold>170725541</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.142</td>
<td valign="top" align="right">&#x2212;<bold>0.027</bold></td>
<td valign="top" align="center"><bold>3.73E-10</bold></td>
<td valign="top" align="center">1.003</td>
<td valign="top" align="center">(0.968&#x2013;1.039)</td>
<td valign="top" align="right">0.878</td>
</tr>
<tr>
<td valign="top" align="left">AC006045.3</td>
<td valign="top" align="left">rs10487796</td>
<td valign="top" align="center"><bold>7</bold></td>
<td valign="top" align="left"><bold>15063429</bold></td>
<td valign="top" align="center"><bold>T/A</bold></td>
<td valign="top" align="left">0.525</td>
<td valign="top" align="right">&#x2212;<bold>0.027</bold></td>
<td valign="top" align="center"><bold>8.54E-20</bold></td>
<td valign="top" align="center">0.980</td>
<td valign="top" align="center">(0.954&#x2013;1.007)</td>
<td valign="top" align="right">0.140</td>
</tr>
<tr>
<td valign="top" align="left">BTBD7P2</td>
<td valign="top" align="left">rs10509938</td>
<td valign="top" align="center"><bold>10</bold></td>
<td valign="top" align="left"><bold>113028616</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.920</td>
<td valign="top" align="right"><bold>0.035</bold></td>
<td valign="top" align="center"><bold>3.18E-11</bold></td>
<td valign="top" align="center">1.016</td>
<td valign="top" align="center">(0.961&#x2013;1.073)</td>
<td valign="top" align="right">0.580</td>
</tr>
<tr>
<td valign="top" align="left">MADD</td>
<td valign="top" align="left">rs10501320</td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>47293798</bold></td>
<td valign="top" align="center"><bold>G/C</bold></td>
<td valign="top" align="left">0.292</td>
<td valign="top" align="right">&#x2212;<bold>0.022</bold></td>
<td valign="top" align="center"><bold>3.47E-08</bold></td>
<td valign="top" align="center">1.004</td>
<td valign="top" align="center">(0.975&#x2013;1.034)</td>
<td valign="top" align="right">0.808</td>
</tr>
<tr>
<td valign="top" align="left">MTNR1B</td>
<td valign="top" align="left">rs1387153</td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>92673827</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.728</td>
<td valign="top" align="right">&#x2212;<bold>0.054</bold></td>
<td valign="top" align="center"><bold>1.27E-58</bold></td>
<td valign="top" align="center">1.020</td>
<td valign="top" align="center">(0.987&#x2013;1.054)</td>
<td valign="top" align="right">0.230</td>
</tr>
<tr>
<td valign="top" align="left">FADS2</td>
<td valign="top" align="left">rs1535</td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>61597971</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.659</td>
<td valign="top" align="right"><bold>0.019</bold></td>
<td valign="top" align="center"><bold>2.75E-09</bold></td>
<td valign="top" align="center">1.013</td>
<td valign="top" align="center">(0.983&#x2013;1.044)</td>
<td valign="top" align="right">0.405</td>
</tr>
<tr>
<td valign="top" align="left" colspan="10"><bold>FG, Breast cancer: ATLAS-GEEAB</bold></td>
<td/>
</tr>
<tr>
<td valign="top" align="left">PROX1-AS1</td>
<td valign="top" align="left">rs1431985</td>
<td valign="top" align="center"><bold>1</bold></td>
<td valign="top" align="left"><bold>214148245</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.327</td>
<td valign="top" align="right">&#x2212;<bold>0.019</bold></td>
<td valign="top" align="center"><bold>1.15E-09</bold></td>
<td valign="top" align="center">0.990</td>
<td valign="top" align="center">(0.964&#x2013;1.016)</td>
<td valign="top" align="right">0.441</td>
</tr>
<tr>
<td valign="top" align="left">SNX17</td>
<td valign="top" align="left">rs1528533</td>
<td valign="top" align="center"><bold>2</bold></td>
<td valign="top" align="left"><bold>27595755</bold></td>
<td valign="top" align="center"><bold>G/C</bold></td>
<td valign="top" align="left">0.458</td>
<td valign="top" align="right"><bold>0.018</bold></td>
<td valign="top" align="center"><bold>5.29E-09</bold></td>
<td valign="top" align="center">0.988</td>
<td valign="top" align="center">(0.961&#x2013;1.016)</td>
<td valign="top" align="right">0.399</td>
</tr>
<tr>
<td valign="top" align="left">ABCB11</td>
<td valign="top" align="left">rs494874</td>
<td valign="top" align="center"><bold>2</bold></td>
<td valign="top" align="left"><bold>169789305</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.628</td>
<td valign="top" align="right"><bold>0.053</bold></td>
<td valign="top" align="center"><bold>1.82E-68</bold></td>
<td valign="top" align="center">1.004</td>
<td valign="top" align="center">(0.975&#x2013;1.033)</td>
<td valign="top" align="right">0.801</td>
</tr>
<tr>
<td valign="top" align="left">SLC2A2</td>
<td valign="top" align="left">rs10513686</td>
<td valign="top" align="center"><bold>3</bold></td>
<td valign="top" align="left"><bold>170725541</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.142</td>
<td valign="top" align="right">&#x2212;<bold>0.027</bold></td>
<td valign="top" align="center"><bold>3.73E-10</bold></td>
<td valign="top" align="center">1.001</td>
<td valign="top" align="center">(0.966&#x2013;1.038)</td>
<td valign="top" align="right">0.941</td>
</tr>
<tr>
<td valign="top" align="left">AC006045.3</td>
<td valign="top" align="left">rs10487796</td>
<td valign="top" align="center"><bold>7</bold></td>
<td valign="top" align="left"><bold>15063429</bold></td>
<td valign="top" align="center"><bold>T/A</bold></td>
<td valign="top" align="left">0.525</td>
<td valign="top" align="right">&#x2212;<bold>0.027</bold></td>
<td valign="top" align="center"><bold>8.54E-20</bold></td>
<td valign="top" align="center">0.980</td>
<td valign="top" align="center">(0.954&#x2013;1.007)</td>
<td valign="top" align="right">0.146</td>
</tr>
<tr>
<td valign="top" align="left">BTBD7P2</td>
<td valign="top" align="left">rs10509938</td>
<td valign="top" align="center"><bold>10</bold></td>
<td valign="top" align="left"><bold>113028616</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.920</td>
<td valign="top" align="right"><bold>0.035</bold></td>
<td valign="top" align="center"><bold>3.18E-11</bold></td>
<td valign="top" align="center">1.014</td>
<td valign="top" align="center">(0.959&#x2013;1.072)</td>
<td valign="top" align="right">0.624</td>
</tr>
<tr>
<td valign="top" align="left">MADD</td>
<td valign="top" align="left">rs10501320</td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>47293798</bold></td>
<td valign="top" align="center"><bold>G/C</bold></td>
<td valign="top" align="left">0.292</td>
<td valign="top" align="right">&#x2212;<bold>0.022</bold></td>
<td valign="top" align="center"><bold>3.47E-08</bold></td>
<td valign="top" align="center">1.004</td>
<td valign="top" align="center">(0.975&#x2013;1.034)</td>
<td valign="top" align="right">0.798</td>
</tr>
<tr>
<td valign="top" align="left">MTNR1B</td>
<td valign="top" align="left">rs1387153</td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>92673827</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.728</td>
<td valign="top" align="right">&#x2212;<bold>0.054</bold></td>
<td valign="top" align="center"><bold>1.27E-58</bold></td>
<td valign="top" align="center">1.020</td>
<td valign="top" align="center">(0.987&#x2013;1.055)</td>
<td valign="top" align="right">0.233</td>
</tr>
<tr>
<td valign="top" align="left">FADS2</td>
<td valign="top" align="left">rs1535</td>
<td valign="top" align="center"><bold>11</bold></td>
<td valign="top" align="left"><bold>61597971</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.659</td>
<td valign="top" align="right"><bold>0.019</bold></td>
<td valign="top" align="center"><bold>2.75E-09</bold></td>
<td valign="top" align="center">1.013</td>
<td valign="top" align="center">(0.982&#x2013;1.044)</td>
<td valign="top" align="right">0.413</td>
</tr>
<tr>
<td valign="top" align="left" colspan="10"><bold>Fasting insulin Breast cancer: OncoArray</bold></td>
<td/>
</tr>
<tr>
<td valign="top" align="left">COBLL1</td>
<td valign="top" align="left">rs10179126</td>
<td valign="top" align="center"><bold>2</bold></td>
<td valign="top" align="left"><bold>165511794</bold></td>
<td valign="top" align="center"><bold>G/C</bold></td>
<td valign="top" align="left">0.605</td>
<td valign="top" align="right"><bold>0.021</bold></td>
<td valign="top" align="center"><bold>3.78E-08</bold></td>
<td valign="top" align="center">1.008</td>
<td valign="top" align="center">(0.995&#x2013;1.021)</td>
<td valign="top" align="right">0.208</td>
</tr>
<tr>
<td valign="top" align="left">GCKR</td>
<td valign="top" align="left">rs780093</td>
<td valign="top" align="center"><bold>2</bold></td>
<td valign="top" align="left"><bold>27742603</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.606</td>
<td valign="top" align="right"><bold>0.021</bold></td>
<td valign="top" align="center"><bold>8.48E-09</bold></td>
<td valign="top" align="center">1.011</td>
<td valign="top" align="center">(0.999&#x2013;1.024)</td>
<td valign="top" align="right">0.076</td>
</tr>
<tr>
<td valign="top" align="left">ZNF12/AC073343.13</td>
<td valign="top" align="left">rs7798471</td>
<td valign="top" align="center"><bold>7</bold></td>
<td valign="top" align="left"><bold>6744957</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.243</td>
<td valign="top" align="right"><bold>0.026</bold></td>
<td valign="top" align="center"><bold>1.55E-08</bold></td>
<td valign="top" align="center">0.997</td>
<td valign="top" align="center">(0.984&#x2013;1.011)</td>
<td valign="top" align="right">0.680</td>
</tr>
<tr>
<td valign="top" align="left">RP11-115J16.1</td>
<td valign="top" align="left">rs4240624</td>
<td valign="top" align="center"><bold>8</bold></td>
<td valign="top" align="left"><bold>9184231</bold></td>
<td valign="top" align="center"><bold>G/A</bold></td>
<td valign="top" align="left">0.925</td>
<td valign="top" align="right">&#x2212;<bold>0.038</bold></td>
<td valign="top" align="center"><bold>1.10E-09</bold></td>
<td valign="top" align="center"><bold>1.027</bold></td>
<td valign="top" align="center"><bold>(1.005&#x2013;1.050)</bold></td>
<td valign="top" align="right"><bold>0.016</bold></td>
</tr>
<tr>
<td valign="top" align="left" colspan="10"><bold>FI, Breast cancer: ATLAS-CGEMS</bold></td>
<td/>
</tr>
<tr>
<td valign="top" align="left">GCKR</td>
<td valign="top" align="left">rs780094</td>
<td valign="top" align="center"><bold>2</bold></td>
<td valign="top" align="left"><bold>27741236</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.606</td>
<td valign="top" align="right"><bold>0.021</bold></td>
<td valign="top" align="center"><bold>1.00E-08</bold></td>
<td valign="top" align="center">0.994</td>
<td valign="top" align="center">(0.828&#x2013;1.193)</td>
<td valign="top" align="right">0.983</td>
</tr>
<tr>
<td valign="top" align="left">ZNF12/AC073343.13</td>
<td valign="top" align="left">rs7798471</td>
<td valign="top" align="center"><bold>7</bold></td>
<td valign="top" align="left"><bold>6744956</bold></td>
<td valign="top" align="center"><bold>T/C</bold></td>
<td valign="top" align="left">0.243</td>
<td valign="top" align="right"><bold>0.026</bold></td>
<td valign="top" align="center"><bold>1.55E-08</bold></td>
<td valign="top" align="center">1.063</td>
<td valign="top" align="center">(0.895&#x2013;1.263)</td>
<td valign="top" align="right">0.708</td>
</tr>
<tr>
<td valign="top" align="left">PPP1R3B</td>
<td valign="top" align="left">rs983309</td>
<td valign="top" align="center"><bold>8</bold></td>
<td valign="top" align="left"><bold>9177731</bold></td>
<td valign="top" align="center"><bold>T/G</bold></td>
<td valign="top" align="left">0.903</td>
<td valign="top" align="right">&#x2212;<bold>0.032</bold></td>
<td valign="top" align="center"><bold>2.03E-09</bold></td>
<td valign="top" align="center">0.971</td>
<td valign="top" align="center">(0.783&#x2013;1.203)</td>
<td valign="top" align="right">0.937</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic>Alt, alternative allele; Chr, chromosome; CI, confidence interval; CGEMS, Cancer Genetic Markers of Susceptibility Breast Cancer Genome-wide Association (GWA) Study; FG, fasting glucose; FI, fasting insulin; GEEA, generalized estimating equation regression adjusted for age; GEEAB, GEEA additionally adjusted for body mass index; OR, odds ratio; Ref, reference allele; SNP, single-nucleotide polymorphism. Numbers in bold face are statistically significant. &#x002A;Genes were arranged by GWA data source for breast cancer: OncoArray, ATLAS-CGEMS, ATLAS-GEEA, and ATLAS-GEEAB. <sup>&#x2020;</sup>Phenotype includes FG and FI; the relevant top SNPs (p &#x003C; 5E-08) were identified by MAGIC. &#x00A5;The SNPs for association with breast cancer risk were pulled from 2 independent consortia (OncoArray and ATLAS [CGEMS; GEEA; and GEEAB]).</italic></attrib>
</table-wrap-foot>
</table-wrap>
<table-wrap position="float" id="T2">
<label>TABLE 2</label>
<caption><p>Mendelian randomization analysis for the effect of genetically determined glucose-metabolism phenotypes on risk for breast cancer.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">A set of GM-SNPs arranged by breast-cancer data source</td>
<td valign="top" align="center">SNP</td>
<td valign="top" align="center">OR</td>
<td valign="top" align="center">95% CI</td>
<td valign="top" align="center">p</td>
<td valign="top" align="center">p<sub>hat</sub> <sup>&#x2020;</sup></td>
</tr>
<tr>
<td/>
<td valign="top" align="center">n</td>
<td/>
<td/>
<td/>
<td/>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><bold>Fasting glucose</bold></td>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">OncoArray</td>
<td valign="top" align="center">19</td>
<td valign="top" align="center">1.002</td>
<td valign="top" align="center">(0.831&#x2013;1.209)</td>
<td valign="top" align="center">0.984</td>
<td valign="top" align="center">&#x003C; 0.001</td>
</tr>
<tr>
<td valign="top" align="left">OncoArray&#x002A;</td>
<td valign="top" align="center">5</td>
<td valign="top" align="center">1.045</td>
<td valign="top" align="center">(0.354&#x2013;3.081)</td>
<td valign="top" align="center">0.916</td>
<td valign="top" align="center">&#x003C;0.001</td>
</tr>
<tr>
<td valign="top" align="left">OncoArray &#x2013; T2DM&#x00A5;</td>
<td valign="top" align="center">16</td>
<td valign="top" align="center">0.981</td>
<td valign="top" align="center">(0.800&#x2013;1.203)</td>
<td valign="top" align="center">0.843</td>
<td valign="top" align="center">&#x003C;0.001</td>
</tr>
<tr>
<td valign="top" align="left">OncoArray &#x2013; T2DM&#x00A5;&#x002A;</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">0.808</td>
<td valign="top" align="center">(0.157&#x2013;4.150)</td>
<td valign="top" align="center">0.706</td>
<td valign="top" align="center">&#x003C;0.001</td>
</tr>
<tr>
<td valign="top" align="left">ATLAS-CGEMS</td>
<td valign="top" align="center">19</td>
<td valign="top" align="center">1.146</td>
<td valign="top" align="center">(0.507&#x2013;2.592)</td>
<td valign="top" align="center">0.729</td>
<td valign="top" align="center">0.993</td>
</tr>
<tr>
<td valign="top" align="left">ATLAS-CGEMS &#x2013; T2DM&#x00A5;</td>
<td valign="top" align="center">16</td>
<td valign="top" align="center">1.002</td>
<td valign="top" align="center">(0.400&#x2013;2.513)</td>
<td valign="top" align="center">0.996</td>
<td valign="top" align="center">0.980</td>
</tr>
<tr>
<td valign="top" align="left">ATLAS-GEEA</td>
<td valign="top" align="center">9</td>
<td valign="top" align="center">1.034</td>
<td valign="top" align="center">(0.748&#x2013;1.429)</td>
<td valign="top" align="center">0.817</td>
<td valign="top" align="center">0.640</td>
</tr>
<tr>
<td valign="top" align="left">ATLAS-GEEAB</td>
<td valign="top" align="center">9</td>
<td valign="top" align="center">1.029</td>
<td valign="top" align="center">(0.747&#x2013;1.416)</td>
<td valign="top" align="center">0.843</td>
<td valign="top" align="center">0.664</td>
</tr>
<tr>
<td valign="top" align="left">FG: Pooled MR</td>
<td valign="top" align="center">38</td>
<td valign="top" align="center">1.014</td>
<td valign="top" align="center">(0.889&#x2013;1.156)</td>
<td valign="top" align="center">0.830</td>
<td valign="top" align="center">0.0007</td>
</tr>
<tr>
<td valign="top" align="left"><bold>Fasting insulin</bold></td>
<td/>
<td/>
<td/>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left">OncoArray</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">1.002</td>
<td valign="top" align="center">(0.417&#x2013;2.405)</td>
<td valign="top" align="center">0.995</td>
<td valign="top" align="center">0.014</td>
</tr>
<tr>
<td valign="top" align="left">OncoArray &#x2013;WHR&#x00A5;</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">0.895</td>
<td valign="top" align="center">(0.202&#x2013;3.964)</td>
<td valign="top" align="center">0.779</td>
<td valign="top" align="center">0.013</td>
</tr>
<tr>
<td valign="top" align="left">ATLAS-CGEMS</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">3.335</td>
<td valign="top" align="center">(0.147&#x2013;75.424)</td>
<td valign="top" align="center">0.238</td>
<td valign="top" align="center">0.889</td>
</tr>
<tr>
<td valign="top" align="left">FI: Pooled MR</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">1.003</td>
<td valign="top" align="center">(0.579&#x2013;1.737)</td>
<td valign="top" align="center">0.988</td>
<td valign="top" align="center">0.056</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic>CI, confidence interval; CGEMS, Cancer Genetic Markers of Susceptibility Breast Cancer Genome-wide Association (GWA) Study; FG, fasting glucose; FI, fasting insulin; GEEA, generalized estimating equation regression adjusted for age; GEEAB, GEEA, additionally adjusted for body mass index; GM, glucose metabolism; MR, Mendelian randomization; OR, odds ratio; SNP, single&#x2013;nucleotide polymorphism; T2DM, type 2 diabetes; WHR, waist-to-hip ratio. <sup>&#x2020;</sup>P<sub>hat</sub> was estimated via Cochran&#x2019;s Q; by correcting multiple comparisons, the MR results for the following sets of SNPs were statistically heterogeneous: FG-OncoArray; FG-OncoArray&#x002A;; FG-OncoArray-T2DM&#x00A5;; FG-OncoArray-T2DM&#x00A5;&#x002A;; FG-Pooled MR; and FI-OncoArray-WHR&#x00A5;. &#x002A;A subset of the GM-SNPs that are statistically associated with breast cancer (p &#x003C; 0.05) was included in the analysis. &#x00A5;GM-SNPs excluding top GWA-SNPs associated with T2DM or WHR were analyzed to reduce the pleiotropic effect from T2DM or WHR, respectively.</italic></attrib>
</table-wrap-foot>
</table-wrap>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption><p>The effect of individual genetic instrumental variables for GTs on breast cancer risk. Each black dot represents a genome-wide GT-associated genetic variant. The blue lines indicate regression and 95% CIs of GTs on breast cancer risk (OR = 1.014, 95% CI: 0.895&#x2013;1.147). CI, confidence interval; FG, fasting glucose; FI, fasting insulin; OR, odds ratio; GTs, glycemic traits.</p></caption>
<graphic xlink:href="fgene-11-540724-g001.tif"/>
</fig>
<table-wrap position="float" id="T3">
<label>TABLE 3</label>
<caption><p>Mendelian randomization&#x2013;Egger test results<sup>&#x2020;</sup>.</p></caption>
<table cellspacing="5" cellpadding="5" frame="hsides" rules="groups">
<thead>
<tr>
<td valign="top" align="left">A set of GM-SNPs arranged by breast-cancer data source</td>
<td valign="top" align="center">Intercept</td>
<td valign="top" align="center">95% CI</td>
<td valign="top" align="center"><italic>p</italic></td>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"><bold>Fasting glucose</bold></td>
<td/>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>OncoArray</italic></td>
<td valign="top" align="center">1.000</td>
<td valign="top" align="center">(0.993&#x2013;1.007)</td>
<td valign="top" align="center">0.995</td>
</tr>
<tr>
<td valign="top" align="left"><italic>OncoArray&#x002A;</italic></td>
<td valign="top" align="center">1.004</td>
<td valign="top" align="center">(0.967&#x2013;1.043)</td>
<td valign="top" align="center">0.743</td>
</tr>
<tr>
<td valign="top" align="left"><italic>OncoArray</italic> &#x2013; T2DM&#x00A5;</td>
<td valign="top" align="center">1.002</td>
<td valign="top" align="center">(0.994&#x2013;1.009)</td>
<td valign="top" align="center">0.607</td>
</tr>
<tr>
<td valign="top" align="left"><italic>OncoArray</italic> &#x2013; T2DM&#x00A5;&#x002A;</td>
<td valign="top" align="center">1.010</td>
<td valign="top" align="center">(0.954&#x2013;1.069)</td>
<td valign="top" align="center">0.533</td>
</tr>
<tr>
<td valign="top" align="left"><italic>ATLAS-CGEMS</italic></td>
<td valign="top" align="center">0.994</td>
<td valign="top" align="center">(0.966&#x2013;1.023)</td>
<td valign="top" align="center">0.683</td>
</tr>
<tr>
<td valign="top" align="left"><italic>ATLAS-CGEMS</italic> &#x2013; T2DM&#x00A5;</td>
<td valign="top" align="center">0.987</td>
<td valign="top" align="center">(0.956&#x2013;1.020)</td>
<td valign="top" align="center">0.414</td>
</tr>
<tr>
<td valign="top" align="left"><italic>ATLAS-GEEA</italic></td>
<td valign="top" align="center">0.999</td>
<td valign="top" align="center">(0.988&#x2013;1.011)</td>
<td valign="top" align="center">0.863</td>
</tr>
<tr>
<td valign="top" align="left"><italic>ATLAS-GEEAB</italic></td>
<td valign="top" align="center">0.999</td>
<td valign="top" align="center">(0.988&#x2013;1.010)</td>
<td valign="top" align="center">0.830</td>
</tr>
<tr>
<td valign="top" align="left">FG: Pooled MR&#x2013;Egger</td>
<td valign="top" align="center">1.000</td>
<td valign="top" align="center">(0.995&#x2013;1.004)</td>
<td valign="top" align="center">0.883</td>
</tr>
<tr>
<td valign="top" align="left"><bold>Fasting insulin</bold></td>
<td/>
<td/>
<td/>
</tr>
<tr>
<td valign="top" align="left"><italic>OncoArray</italic></td>
<td valign="top" align="center">1.014</td>
<td valign="top" align="center">(0.995&#x2013;1.034)</td>
<td valign="top" align="center">0.088</td>
</tr>
<tr>
<td valign="top" align="left"><italic>OncoArray</italic> &#x2013; WHR&#x00A5;</td>
<td valign="top" align="center">1.014</td>
<td valign="top" align="center">(0.931&#x2013;1.103)</td>
<td valign="top" align="center">0.291</td>
</tr>
<tr>
<td valign="top" align="left"><italic>ATLAS-CGEMS</italic></td>
<td valign="top" align="center">1.003</td>
<td valign="top" align="center">(0.698&#x2013;1.442)</td>
<td valign="top" align="center">0.929</td>
</tr>
<tr>
<td valign="top" align="left">FI: Pooled MR&#x2013;Egger</td>
<td valign="top" align="center">1.014</td>
<td valign="top" align="center">(1.005&#x2013;1.024)</td>
<td valign="top" align="center">0.015</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<attrib><italic><italic>CI, confidence interval; CGEMS, Cancer Genetic Markers of Susceptibility Breast Cancer Genome-wide Association (GWA) Study; FG, fasting glucose; FI, fasting insulin; GEEA, generalized estimating equation regression adjusted for age; GEEAB, GEEA additionally adjusted for body mass index; GM, glucose metabolism; MR, Mendelian randomization; SNP, single-nucleotide polymorphism; T2DM, type 2 diabetes; WHR, waist-to-hip ratio. <sup>&#x2020;</sup>MR&#x2013;Egger test cannot estimate standard error with a single or 2 SNPs. &#x002A;A subset of the GM-SNPs that are statistically associated with breast cancer (p &#x003C; 0.05) was included in the analysis. &#x00A5;GM-SNPs excluding top GWA-SNPs associated with T2DM or WHR were analyzed to reduce the pleiotropic effect from T2DM or WHR, respectively.</italic></italic></attrib>
</table-wrap-foot>
</table-wrap>
<p>We analyzed the relatively large and most-updated GWA-datasets for causality between GTs and breast cancer. Given that associations between metabolic markers and breast cancer risk can differ by menopausal status, our findings may be confounded. However, data was not available on the menopausal status, thus warranting future studies that account for this difference. In addition, whereas MR is considered a conservative approach, it may be confounded when modeled SNPs independently affect breast cancer risk through intermediate traits other than GTs.</p>
<p>Our study results should be interpreted with caution because of population structure bias (i.e., results biased due to tagged environmental factors) and unmeasured confounding factors that could have introduced bias. MR analysis might also be subject to non-linearity between exposure and outcome, but potential violation of the linearity assumption tends to bias MR estimates toward the null, rather than generating a spurious association (<xref ref-type="bibr" rid="B8">Smith and Ebrahim, 2003</xref>). Moreover, our study may not be generalized to other races or ethnicity, in which the association between genetic instruments, GTs, and breast cancer risk may be different.</p>
<p>Our findings indicate a null association between genetically determined GTs and breast cancer risk among European women. Our study may contribute to more complete characterizing of molecular pathways in GTs and breast cancer. It also highlights the need to conduct a more comprehensive and individual-level analysis using more detailed trait information, including risk causing confusion in this field of research.</p>
</sec>
<sec id="S4">
<title>Data Availability Statement</title>
<p>The datasets generated for this study are available on request to the corresponding author.</p>
</sec>
<sec id="S5">
<title>Author Contributions</title>
<p>SJ, NM, SH, and Z-FZ designed the study. SJ and SH performed the genomic data QC and statistical analysis and interpreted the data. NM and Z-FZ supervised the genomic data QC and analysis and participated in the study coordination and interpreted the data. SJ secured funding for this project. All authors participated in the manuscript writing and editing, read and approved the submission of the manuscript.</p>
</sec>
<sec id="conf1">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</body>
<back>
<fn-group>
<fn fn-type="financial-disclosure">
<p><bold>Funding.</bold> This study was supported by the National Institute of Nursing Research of the National Institutes of Health under Award Number K01NR017852 and a University of California Cancer Research Coordinating Committee grant (CRN-18-522722).</p>
</fn>
</fn-group>
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<label>1</label>
<p><ext-link ext-link-type="uri" xlink:href="https://www.magicinvestigators.org/">https://www.magicinvestigators.org/</ext-link></p></fn>
<fn id="footnote2">
<label>2</label>
<p><ext-link ext-link-type="uri" xlink:href="http://bcac.ccge.medschl.cam.ac.uk/bcacdata">http://bcac.ccge.medschl.cam.ac.uk/bcacdata</ext-link></p></fn>
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<p><ext-link ext-link-type="uri" xlink:href="https://atlas.ctglab.nl">https://atlas.ctglab.nl</ext-link></p></fn>
</fn-group>
</back>
</article>