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<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Genet.</journal-id>
<journal-title>Frontiers in Genetics</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Genet.</abbrev-journal-title>
<issn pub-type="epub">1664-8021</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fgene.2017.00077</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Genetics</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Behavioral Phenotyping and Pathological Indicators of Parkinson&#x00027;s Disease in <italic>C. elegans</italic> Models</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Maulik</surname> <given-names>Malabika</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn003"><sup>&#x02020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/430517/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Mitra</surname> <given-names>Swarup</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="author-notes" rid="fn003"><sup>&#x02020;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/377210/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Bult-Ito</surname> <given-names>Abel</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Taylor</surname> <given-names>Barbara E.</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Vayndorf</surname> <given-names>Elena M.</given-names></name>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
<xref ref-type="author-notes" rid="fn001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/60672/overview"/>
</contrib>
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<aff id="aff1"><sup>1</sup><institution>Department of Chemistry and Biochemistry, University of Alaska Fairbanks</institution> <country>Fairbanks, AK, United States</country></aff>
<aff id="aff2"><sup>2</sup><institution>Department of Biology and Wildlife, University of Alaska Fairbanks</institution> <country>Fairbanks, AK, United States</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Biological Sciences, California State University, Long Beach</institution> <country>Long Beach, CA, United States</country></aff>
<aff id="aff4"><sup>4</sup><institution>Institute of Arctic Biology, University of Alaska Fairbanks</institution> <country>Fairbanks, AK, United States</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Elena G. Pasyukova, Institute of Molecular Genetics of Russian Academy of Sciences, Russia</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Jeremy Michael Van Raamsdonk, Van Andel Institute, United States; Srinivas Ayyadevara, Central Arkansas Veterans Healthcare System, United States; Michael Wink, Heidelberg University, Germany</p></fn>
<fn fn-type="corresp" id="fn001"><p>&#x0002A;Correspondence: Elena M. Vayndorf <email>evayndorf&#x00040;alaska.edu</email></p></fn>
<fn fn-type="other" id="fn002"><p>This article was submitted to Genetics of Aging, a section of the journal Frontiers in Genetics</p></fn>
<fn fn-type="other" id="fn003"><p>&#x02020;These authors have contributed equally to this work.</p></fn></author-notes>
<pub-date pub-type="epub">
<day>13</day>
<month>06</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="collection">
<year>2017</year>
</pub-date>
<volume>8</volume>
<elocation-id>77</elocation-id>
<history>
<date date-type="received">
<day>10</day>
<month>04</month>
<year>2017</year>
</date>
<date date-type="accepted">
<day>22</day>
<month>05</month>
<year>2017</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2017 Maulik, Mitra, Bult-Ito, Taylor and Vayndorf.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>Maulik, Mitra, Bult-Ito, Taylor and Vayndorf</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Parkinson&#x00027;s disease (PD) is a neurodegenerative disorder with symptoms that progressively worsen with age. Pathologically, PD is characterized by the aggregation of &#x003B1;-synuclein in cells of the substantia nigra in the brain and loss of dopaminergic neurons. This pathology is associated with impaired movement and reduced cognitive function. The etiology of PD can be attributed to a combination of environmental and genetic factors. A popular animal model, the nematode roundworm <italic>Caenorhabditis elegans</italic>, has been frequently used to study the role of genetic and environmental factors in the molecular pathology and behavioral phenotypes associated with PD. The current review summarizes cellular markers and behavioral phenotypes in transgenic and toxin-induced PD models of <italic>C. elegans</italic>.</p>
</abstract>
<kwd-group>
<kwd>Parkinson&#x00027;s disease (PD)</kwd>
<kwd><italic>Caenorhabditis elegans</italic> (<italic>C. elegans</italic>)</kwd>
<kwd>behavioral phenotyping</kwd>
<kwd>dopamine</kwd>
<kwd>pathological markers</kwd>
</kwd-group>
<counts>
<fig-count count="3"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="268"/>
<page-count count="21"/>
<word-count count="18573"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>Parkinson&#x00027;s disease (PD) is the second most prevalent age-related neurodegenerative disorder after Alzheimer&#x00027;s disease. It affects seven to 10 million individuals worldwide (Beitz, <xref ref-type="bibr" rid="B12">2014</xref>), with the mean age of onset at 60 years, where 1% of all individuals over the age of 60 and 4% of those over 80 years present with PD symptoms. PD is characterized by the progressive loss of dopaminergic neurons in the substantia nigra pars compacta (nigrostriatal pathway) area of the brain (Michel et al., <xref ref-type="bibr" rid="B154">2013</xref>; Kalia and Lang, <xref ref-type="bibr" rid="B112">2015</xref>). At the cellular level, the hallmarks of PD include intra-cytoplasmic inclusions that contain a disease-specific protein: &#x003B1;-synuclein, a primary component of Lewy bodies and dystrophic Lewy neurites in neurons (Bethlem and Den Hartog Jager, <xref ref-type="bibr" rid="B16">1960</xref>; Spillantini et al., <xref ref-type="bibr" rid="B219">1997</xref>; Dickson, <xref ref-type="bibr" rid="B53">2012</xref>). The loss of dopaminergic neurons results in motor impairments, including tremors, hypokinesia, bradykinesia, rigidity, and postural instability (Samii et al., <xref ref-type="bibr" rid="B191">2004</xref>; Jankovic, <xref ref-type="bibr" rid="B106">2008</xref>; Yao S. C. et al., <xref ref-type="bibr" rid="B261">2013</xref>). Other recognizable motor deficits include festination, speech and swallowing disorders, and handwriting in small letters (Jankovic, <xref ref-type="bibr" rid="B106">2008</xref>; Russell et al., <xref ref-type="bibr" rid="B188">2010</xref>). Since PD affects neurons in the central and peripheral nervous systems, patients typically also exhibit multiple non-motor symptoms including anxiety, depression, memory loss, and olfactory deficits (Doty, <xref ref-type="bibr" rid="B55">2012</xref>; Grover et al., <xref ref-type="bibr" rid="B85">2015</xref>). While the cause of PD is currently unknown, genetic (familial) and environmental (sporadic) triggers are two major factors that play a role in the development of the disease, with the environment accounting for over two-thirds of all cases (Fleming et al., <xref ref-type="bibr" rid="B64">1994</xref>; Warner and Schapira, <xref ref-type="bibr" rid="B250">2003</xref>; Gatto et al., <xref ref-type="bibr" rid="B73">2010</xref>; Goldman et al., <xref ref-type="bibr" rid="B80">2012</xref>; Trinh and Farrer, <xref ref-type="bibr" rid="B233">2013</xref>). The predisposition to both sporadic and familial types of PD is linked to multiple genes whose function is an area of active investigation. These include &#x003B1;-synuclein, LRRK2, PARK2, <italic>DJ-1</italic>, GBA, UCHL1 and others. For example, a mutation in the glucocerebrosidase (GBA) gene, which codes for an enzyme essential for metabolism of lysosomal substrates is linked to the pathogenesis of sporadic PD (Gegg et al., <xref ref-type="bibr" rid="B74">2012</xref>). Similarly, a mutation in the ubiquitin carboxyl-terminal hydrolase L1 (UCHL1), an enzyme which is involved in the removal and recycling of ubiquitin molecules from degraded proteins, and ligation of ubiquitin to proteins to mark them for degradation, has been linked to the early-onset of familial PD (Dawson and Dawson, <xref ref-type="bibr" rid="B49">2003</xref>). The identification of these and other genes, and the discovery that certain toxins such as MPTP, 6-OHDA, and paraquat lead to PD symptoms, has informed the development of genetic and toxin-induced PD models (Polymeropoulos et al., <xref ref-type="bibr" rid="B180">1997</xref>; Bonifati et al., <xref ref-type="bibr" rid="B25">2003</xref>; Pais&#x000E1;n-Ruiz et al., <xref ref-type="bibr" rid="B175">2004</xref>; Valente et al., <xref ref-type="bibr" rid="B236">2004</xref>; Zimprich et al., <xref ref-type="bibr" rid="B266">2004</xref>) and resulted in a better understanding of disease etiology, pathology, and molecular mechanisms (Harrington et al., <xref ref-type="bibr" rid="B89">2010</xref>; Whitworth, <xref ref-type="bibr" rid="B254">2011</xref>; Blesa et al., <xref ref-type="bibr" rid="B21">2012a</xref>).</p>
<p>In mammalian models, genetically modified rodents have proven critical to the understanding of PD pathology and the exploration of new therapeutic strategies (Ribeiro et al., <xref ref-type="bibr" rid="B184">2013</xref>). Rodent models display many of the clinical features of PD such as the loss of dopaminergic neurons (Meredith and Rademacher, <xref ref-type="bibr" rid="B151">2011</xref>; Thiele et al., <xref ref-type="bibr" rid="B228">2012</xref>; Torres and Dunnett, <xref ref-type="bibr" rid="B230">2012</xref>), neurochemical changes in dopamine transmission and signaling, motor dysfunction, and non-motor symptoms including cognitive decline, autonomic dysfunction, depression, and hyposmia (Taylor et al., <xref ref-type="bibr" rid="B227">2010</xref>; Schirinzi et al., <xref ref-type="bibr" rid="B202">2016</xref>). However, these models do not mimic some important pathological hallmarks of the disease (Fleming and Chesselet, <xref ref-type="bibr" rid="B65">2006</xref>; Visanji et al., <xref ref-type="bibr" rid="B246">2016</xref>) such as the gradual neurodegenerative process, gross morphological abnormalities and overt motor alterations (Yue and Lachenmayer, <xref ref-type="bibr" rid="B263">2011</xref>; Ribeiro et al., <xref ref-type="bibr" rid="B184">2013</xref>; Schirinzi et al., <xref ref-type="bibr" rid="B202">2016</xref>). Moreover, gene editing techniques in rodents involve complex experimental design, significant time investment and considerable expense. Environmental toxin-induced rodent models have also provided valuable information about PD pathology. For example, 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) induces a severe and permanent parkinsonism syndrome that features the major symptoms of human PD including rigidity, tremor, postural instability, and slowness of movement (Liou et al., <xref ref-type="bibr" rid="B137">1997</xref>; Bove et al., <xref ref-type="bibr" rid="B26">2005</xref>). In addition, environmental exposure to paraquat is a risk factor for PD; paraquat administration increases &#x003B1;-synuclein levels and &#x003B1;-synuclein-positive inclusion bodies in substantia nigra neurons (Manning-Bog et al., <xref ref-type="bibr" rid="B143">2002</xref>). A major drawback of toxin-induced models is that acutely induced neurodegeneration investigates a phase of PD when nearly 70&#x02013;80% of dopaminergic neurons are already lost, thus lacking the age-dependent progressive lesions and Lewy bodies that are typical of human patients (Blandini and Armentero, <xref ref-type="bibr" rid="B20">2012</xref>; Schirinzi et al., <xref ref-type="bibr" rid="B202">2016</xref>).</p>
<p>Non-mammalian, including invertebrate models such as <italic>Drosophila melanogaster</italic> and <italic>Caenorhabditis elegans</italic> are also useful in understanding the molecular mechanisms of PD (Jagmag et al., <xref ref-type="bibr" rid="B105">2015</xref>). These models facilitate investigations of PD-associated molecular signaling pathways and first-round screening that can be followed-up in mammalian models (Jagmag et al., <xref ref-type="bibr" rid="B105">2015</xref>). For example, <italic>D. melanogaster</italic> transgenic models have helped clarify the role of PD candidate genes in mitochondrial physiology (Venderova et al., <xref ref-type="bibr" rid="B243">2009</xref>; Dawson et al., <xref ref-type="bibr" rid="B50">2010</xref>; Guo, <xref ref-type="bibr" rid="B87">2012</xref>). Similarly, the nematode <italic>C. elegans</italic> is a useful model organism for studying healthy and abnormal neuronal aging, including cellular symptoms of PD. <italic>Caenorhabditis elegans</italic> share many conserved cellular pathways and mechanisms with mammals, including humans (Consortium, <xref ref-type="bibr" rid="B43">1998</xref>; Lai et al., <xref ref-type="bibr" rid="B123">2000</xref>; Shaye and Greenwald, <xref ref-type="bibr" rid="B208">2011</xref>). These cellular pathways can be genetically manipulated using RNA interference (RNAi) by gene-specific bacterial feeding (Fire et al., <xref ref-type="bibr" rid="B62">1998</xref>), which enables rapid screening of target genes (Jorgensen and Mango, <xref ref-type="bibr" rid="B110">2002</xref>; Wang and Sherwood, <xref ref-type="bibr" rid="B249">2011</xref>). RNAi screening is an important tool for predicting pathogenic mechanisms before moving to complex organisms for further investigation (Jorgensen and Mango, <xref ref-type="bibr" rid="B110">2002</xref>; Leung et al., <xref ref-type="bibr" rid="B134">2008</xref>; O&#x00027;Reilly et al., <xref ref-type="bibr" rid="B173">2014</xref>). Despite major anatomical differences from humans, the <italic>C. elegans</italic> nervous system consists of a circumpharyngeal nerve ring, and contains key cellular and molecular features of mammalian neurons, including conserved neurotransmitter systems (dopamine, GABA, acetylcholine, serotonin, etc.), receptors, axon guidance molecules, ion channels, and synaptic features. Although &#x003B1;-synuclein is not endogenous to <italic>C. elegans</italic>, expression of this human PD-associated protein in <italic>C. elegans</italic> dopaminergic neurons results in neurodegeneration in an age-dependent manner (Lakso et al., <xref ref-type="bibr" rid="B124">2003</xref>; Kuwahara et al., <xref ref-type="bibr" rid="B120">2006</xref>; Hamamichi et al., <xref ref-type="bibr" rid="B88">2008</xref>; Karpinar et al., <xref ref-type="bibr" rid="B114">2009</xref>). Moreover, most familial PD genes such as <italic>PINK1, PARK, DJ-1</italic>, and <italic>LRRK2</italic> have at least one <italic>C. elegans</italic> homolog (Sakaguchi-Nakashima et al., <xref ref-type="bibr" rid="B189">2007</xref>; S&#x000E4;mann et al., <xref ref-type="bibr" rid="B190">2009</xref>; Chege and Mccoll, <xref ref-type="bibr" rid="B38">2014</xref>; Lee and Cannon, <xref ref-type="bibr" rid="B130">2015</xref>). Hermaphroditic <italic>C. elegans</italic> have 302 neurons, of which eight (ADEL, ADER, CEPDL, CEPDR, CEPVL, CEPVR, PDEL, and PDER) are dopaminergic such as those implicated in PD in humans (Sulston et al., <xref ref-type="bibr" rid="B222">1975</xref>). Four dopamine receptors (DOP-1, DOP-2, DOP-3, and DOP-4) have been identified in <italic>C. elegans</italic>, including homologs of each of the two classes of mammalian dopamine receptors (D1- and D2-like) (Chase and Koelle, <xref ref-type="bibr" rid="B36">2007</xref>). <italic>Caenorhabditis elegans</italic> neuronal morphology can be linked to functional abnormalities for easy visualization and quantification making it possible to establish a correlation between behaviors and aberrations in the target neurons, which are induced by mutations or exposure to toxins (Nass et al., <xref ref-type="bibr" rid="B167">2002</xref>; Toth et al., <xref ref-type="bibr" rid="B231">2012</xref>; Scerbak et al., <xref ref-type="bibr" rid="B199">2014</xref>; Vayndorf et al., <xref ref-type="bibr" rid="B241">2016</xref>). In addition, <italic>C. elegans</italic> have low maintenance costs, and their shorter lifespan (2&#x02013;3 weeks) reduces the time needed for each experiment. These advantages make <italic>C. elegans</italic> a valuable model system for genetic and chemical screening, and pre-clinical research. In contrast, the limitations of a <italic>C. elegans</italic> PD model include a lack of defined organs, including the complex brain structure seen in humans and, therefore, the inability to recapitulate the same set of complex interactions involving various brain cells and tissues seen in human PD patients (Tissenbaum, <xref ref-type="bibr" rid="B229">2015</xref>). In addition, the mostly impermeable cuticle and inability of intestinal cells to take up some types of chemicals may require high exposure doses to affect the animal&#x00027;s physiology (Leung et al., <xref ref-type="bibr" rid="B134">2008</xref>; Tissenbaum, <xref ref-type="bibr" rid="B229">2015</xref>). Despite these limitations, <italic>C. elegans</italic> have proven useful in aging research (Tissenbaum, <xref ref-type="bibr" rid="B229">2015</xref>) and numerous studies have used <italic>C. elegans</italic> to investigate the cellular mechanisms associated with PD (see Table <xref ref-type="table" rid="T1">1</xref>). The aim of this review is to highlight the genetic and chemical tools and reagents, as well as genetic, biochemical, physiological, and behavioral endpoints associated with investigating the cellular and behavioral symptoms of PD in <italic>C. elegans</italic>.</p>
<table-wrap position="float" id="T1">
<label>Table 1</label>
<caption><p>Strains of <italic>C. elegans</italic> commonly used to study PD pathology.</p></caption>
<table frame="hsides" rules="groups">
<thead><tr>
<th valign="top" align="left"><bold>Strain Name</bold></th>
<th valign="top" align="left"><bold>Genotype</bold></th>
<th valign="top" align="left"><bold>Available through the CGC?</bold></th>
<th valign="top" align="left"><bold>Pathological markers</bold></th>
<th valign="top" align="left"><bold>Behavioral phenotype</bold></th>
<th valign="top" align="left"><bold>References</bold></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">N2</td>
<td valign="top" align="left">Wild isolate Bristol</td>
<td valign="top" align="left">Yes</td>
<td valign="top" align="left">Estimation of DA content post treatment with MPTP/6-OHDA/insecticides and compounds.</td>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">Ali and Rajini, <xref ref-type="bibr" rid="B3">2012</xref>; Fu et al., <xref ref-type="bibr" rid="B67">2014a</xref>; Chen P. et al., <xref ref-type="bibr" rid="B39">2015</xref>; Satapathy et al., <xref ref-type="bibr" rid="B195">2016</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">Locomotion.</td>
<td valign="top" align="left">Ali and Rajini, <xref ref-type="bibr" rid="B3">2012</xref>; Li J. et al., <xref ref-type="bibr" rid="B136">2016</xref>; Xu et al., <xref ref-type="bibr" rid="B257">2017</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="left">Fecundity.</td>
<td valign="top" align="left">Fitsanakis, <xref ref-type="bibr" rid="B63">2012</xref>; Nidheesh et al., <xref ref-type="bibr" rid="B170">2016</xref>; Satapathy et al., <xref ref-type="bibr" rid="B195">2016</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">NL5901</td>
<td valign="top" align="left">unc-54p::&#x003B1;-synuclein::YFP &#x0002B; unc-119(&#x0002B;)</td>
<td valign="top" align="left">Yes</td>
<td valign="top" align="left">1. &#x003B1;-synuclein overexpression.</td>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">van Ham et al., <xref ref-type="bibr" rid="B239">2008</xref>; Jadiya et al., <xref ref-type="bibr" rid="B102">2011</xref>, <xref ref-type="bibr" rid="B103">2012</xref>; Bodhicharla et al., <xref ref-type="bibr" rid="B24">2012</xref>; Jadiya and Nazir, <xref ref-type="bibr" rid="B104">2012</xref>; Jensen et al., <xref ref-type="bibr" rid="B107">2012</xref>; Shukla et al., <xref ref-type="bibr" rid="B211">2012</xref>; Shi et al., <xref ref-type="bibr" rid="B209">2013</xref>; Fatima et al., <xref ref-type="bibr" rid="B60">2014</xref>; Munoz-Lobato et al., <xref ref-type="bibr" rid="B162">2014</xref>; Sashidhara et al., <xref ref-type="bibr" rid="B194">2014</xref>; Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>; Edwards et al., <xref ref-type="bibr" rid="B57">2015</xref>; Heiner et al., <xref ref-type="bibr" rid="B93">2015</xref>; Liu et al., <xref ref-type="bibr" rid="B138">2015</xref>; Asthana et al., <xref ref-type="bibr" rid="B8">2016</xref>; Li J. et al., <xref ref-type="bibr" rid="B136">2016</xref>; Xu et al., <xref ref-type="bibr" rid="B257">2017</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">2. Estimation of Lipid content using Nile red.</td>
<td/>
<td valign="top" align="left">Jadiya et al., <xref ref-type="bibr" rid="B102">2011</xref>; Jadiya and Nazir, <xref ref-type="bibr" rid="B104">2012</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">Not done.</td>
<td valign="top" align="left">Chemotaxis (Nonanol repulsion assay).</td>
<td valign="top" align="left">Fatima et al., <xref ref-type="bibr" rid="B60">2014</xref>; Sashidhara et al., <xref ref-type="bibr" rid="B194">2014</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">OW13</td>
<td valign="top" align="left">unc-54p::&#x003B1;-synuclein::YFP &#x0002B; unc-119(&#x0002B;)</td>
<td valign="top" align="left">Yes</td>
<td valign="top" align="left">1. &#x003B1;-synuclein overexpression.</td>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">van Ham et al., <xref ref-type="bibr" rid="B239">2008</xref>; Fu et al., <xref ref-type="bibr" rid="B67">2014a</xref>,<xref ref-type="bibr" rid="B68">b</xref>; Chen Y. M. et al., <xref ref-type="bibr" rid="B41">2015</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">2. Estimation of Lipid content using Nile red.</td>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">Fu et al., <xref ref-type="bibr" rid="B67">2014a</xref>,<xref ref-type="bibr" rid="B68">b</xref>; Chen Y. M. et al., <xref ref-type="bibr" rid="B41">2015</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">DDP1</td>
<td valign="top" align="left">uonEx1 [unc-54::alpha-synuclein::CFP &#x0002B; unc-54::alpha-synuclein::YFP(Venus)]</td>
<td valign="top" align="left">Yes</td>
<td valign="top" align="left">Monitoring the influence of genetic and/or environmental factors on the extent of &#x003B1;-synuclein aggregation using FRET signals.</td>
<td valign="top" align="left">Reduced lifespan, reduced pharyngeal pumping compared to N2.</td>
<td valign="top" align="left">Bodhicharla et al., <xref ref-type="bibr" rid="B24">2012</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">BZ555</td>
<td valign="top" align="left">dat-1p::GFP</td>
<td valign="top" align="left">Yes</td>
<td valign="top" align="left">Dopaminergic degeneration using agents such as 6-OHDA, MPTP, insecticide like monocrotophos.</td>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">Pu and Le, <xref ref-type="bibr" rid="B182">2008</xref>; Jadiya et al., <xref ref-type="bibr" rid="B102">2011</xref>; Ali and Rajini, <xref ref-type="bibr" rid="B3">2012</xref>; Fitsanakis, <xref ref-type="bibr" rid="B63">2012</xref>; Fatima et al., <xref ref-type="bibr" rid="B60">2014</xref>; Fu et al., <xref ref-type="bibr" rid="B67">2014a</xref>; Chen Y. M. et al., <xref ref-type="bibr" rid="B41">2015</xref>; Li J. et al., <xref ref-type="bibr" rid="B136">2016</xref>; Nidheesh et al., <xref ref-type="bibr" rid="B170">2016</xref>; Satapathy et al., <xref ref-type="bibr" rid="B195">2016</xref>; Xu et al., <xref ref-type="bibr" rid="B257">2017</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">Basal response to food.</td>
<td valign="top" align="left">Li J. et al., <xref ref-type="bibr" rid="B136">2016</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">JVR105</td>
<td valign="top" align="left">cwrIs730 [dat-1p::GFP, lin-15(&#x0002B;)]</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Neuronal morphology.</td>
<td valign="top" align="left">1. Basal slowing.<break/>2. Ethanol avoidance.<break/>3. Area restricted searching.</td>
<td valign="top" align="left">Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">BY200</td>
<td valign="top" align="left">dat-1p::GFP, pRF4(rol-6(su1006)</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Dopaminergic degeneration using agents such as 6-OHDA, MPTP.</td>
<td valign="top" align="left">Locomotion.</td>
<td valign="top" align="left">Nass et al., <xref ref-type="bibr" rid="B167">2002</xref>; Benedetto et al., <xref ref-type="bibr" rid="B13">2010</xref>; Settivari et al., <xref ref-type="bibr" rid="B207">2013</xref>; Masoudi et al., <xref ref-type="bibr" rid="B147">2014</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">BY250</td>
<td valign="top" align="left">dat-1p::GFP</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Dopaminergic degeneration using agents such as 6-OHDA, Manganese, Uranium, bacterial metabolite, methyl mercury, aluminum.</td>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">Nass et al., <xref ref-type="bibr" rid="B166">2005</xref>; Jiang et al., <xref ref-type="bibr" rid="B108">2007</xref>; Settivari et al., <xref ref-type="bibr" rid="B206">2009</xref>; VanDuyn et al., <xref ref-type="bibr" rid="B238">2010</xref>, <xref ref-type="bibr" rid="B237">2013</xref>; Zhou et al., <xref ref-type="bibr" rid="B264">2013</xref>; Gonzalez-Hunt et al., <xref ref-type="bibr" rid="B81">2014</xref>; Ray et al., <xref ref-type="bibr" rid="B183">2014</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">JVR103</td>
<td valign="top" align="left">dat-1p::GFP</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Dopaminergic degeneration.</td>
<td valign="top" align="left">1. Basal response to food.</td>
<td valign="top" align="left">Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="left">2. Locomotion.</td>
<td/>
</tr>
<tr>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="left">3. Area restricted searching.</td>
<td/>
</tr>
<tr>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="left">4. Ethanol avoidance.</td>
<td/>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">UA57</td>
<td valign="top" align="left">dat-1p::GFP &#x0002B; dat-1p::CAT-2</td>
<td valign="top" align="left">Yes</td>
<td valign="top" align="left">1. Dopaminergic degeneration using MPTP.</td>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">Braungart et al., <xref ref-type="bibr" rid="B28">2004</xref>; Yao et al., <xref ref-type="bibr" rid="B258">2010a</xref>; Masoudi et al., <xref ref-type="bibr" rid="B147">2014</xref>; Liu et al., <xref ref-type="bibr" rid="B138">2015</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">2. Age dependent dopaminergic degeneration.</td>
<td/>
<td/>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">UA44</td>
<td valign="top" align="left">dat-1p::&#x003B1;-synuclein&#x0002B;dat-1p::GFP</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">&#x003B1;-synuclein-induced DA neuronal death.</td>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">Cao et al., <xref ref-type="bibr" rid="B34">2005</xref>; Buttner et al., <xref ref-type="bibr" rid="B30">2014</xref>; Munoz-Lobato et al., <xref ref-type="bibr" rid="B162">2014</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">BY273</td>
<td valign="top" align="left">dat-1p::GFP; dat-1p::WT&#x003B1;-synuclein</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Dopaminergic degeneration induced by &#x003B1;-synuclein using manganese and aluminum.</td>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">Settivari et al., <xref ref-type="bibr" rid="B206">2009</xref>; VanDuyn et al., <xref ref-type="bibr" rid="B237">2013</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">JVR107 (Strain name not published for Kuwahara et al., <xref ref-type="bibr" rid="B120">2006</xref>, <xref ref-type="bibr" rid="B121">2008</xref>)</td>
<td valign="top" align="left">dat-1p:: &#x003B1;-synuclein[A53T]</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Dopaminergic degeneration.</td>
<td valign="top" align="left">1.Basal response to food.</td>
<td valign="top" align="left">Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="left">2. Locomotion.</td>
<td/>
</tr>
<tr>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="left">3. Area restricted searching.</td>
<td/>
</tr>
<tr>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="left">4. Ethanol avoidance.</td>
<td/>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">1. Dopaminergic degeneration.</td>
<td valign="top" align="left">Basal response to food.</td>
<td valign="top" align="left">Kuwahara et al., <xref ref-type="bibr" rid="B120">2006</xref>, <xref ref-type="bibr" rid="B121">2008</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">2. Estimation of DA content.</td>
<td/>
<td/>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">JVR203</td>
<td valign="top" align="left">dat-1p::&#x003B1;-synuclein[A53T]; vtIs7[dat-1p::GFP(pRB490)]</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Dopaminergic degeneration.</td>
<td valign="top" align="left">1. Basal response to food.</td>
<td valign="top" align="left">Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="left">2. Locomotion.</td>
<td/>
</tr>
<tr>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="left">3. Area restricted searching.</td>
<td/>
</tr>
<tr>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="left">4. Ethanol avoidance.</td>
<td/>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">JVR104</td>
<td valign="top" align="left">cwrIs856 [dat-1p::GFP, datp-1::LRRK2(WT), lin-15(&#x0002B;)], cwrIs722 [dat-1p::GFP, Pdat-1::LRRK2 (WT), lin-15(&#x0002B;)]</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Dopaminergic degeneration.</td>
<td valign="top" align="left">1. Basal response to food.</td>
<td valign="top" align="left">Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref></td>
</tr>
<tr>
<td valign="top" align="left">JVR168</td>
<td/>
<td/>
<td/>
<td valign="top" align="left">2. Locomotion.</td>
<td/>
</tr>
<tr>
<td valign="top" align="left">SGC722</td>
<td/>
<td/>
<td/>
<td valign="top" align="left">3. Area</td>
<td/>
</tr>
<tr>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="left">restricted searching.</td>
<td/>
</tr>
<tr>
<td/>
<td/>
<td/>
<td/>
<td valign="top" align="left">4. Ethanol avoidance.</td>
<td/>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">1. Age-dependent degeneration of DA neurons due to overexpression of LRRK2 (WT).</td>
<td valign="top" align="left">1. Basal response to food.</td>
<td valign="top" align="left">Yao et al., <xref ref-type="bibr" rid="B258">2010a</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">2. Estimation of DA content.</td>
<td valign="top" align="left">2. Locomotion.</td>
<td/>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">Not published</td>
<td valign="top" align="left">dat-1p:: &#x003B1;-synuclein</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Dopaminergic degeneration.</td>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">Cao et al., <xref ref-type="bibr" rid="B34">2005</xref>; Kautu et al., <xref ref-type="bibr" rid="B115">2013</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">Not published</td>
<td valign="top" align="left">dat-1p:: &#x003B1;-synuclein[A53T]</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Dopaminergic degeneration.</td>
<td valign="top" align="left">Locomotion.</td>
<td valign="top" align="left">Lakso et al., <xref ref-type="bibr" rid="B124">2003</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">SGC851</td>
<td valign="top" align="left">lin-15(n765ts) X; cwrIs851 [dat-1p::GFP, dat-1p::LRRK2(R1441C), lin-15(&#x0002B;)]</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">1. Age-dependent degeneration of DA neurons due to overexpression of LRRK2 (R1441C).</td>
<td valign="top" align="left">1. Basal response to food.</td>
<td valign="top" align="left">Yao et al., <xref ref-type="bibr" rid="B258">2010a</xref>; Yao C. et al., <xref ref-type="bibr" rid="B260">2013</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">2. Estimation of DA content.</td>
<td valign="top" align="left">2. Locomotion.</td>
<td/>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">SGC856</td>
<td valign="top" align="left">lin-15(n765ts) X; cwrIs856 [dat-1p::GFP, dat-1p::LRRK2(G2019S), lin-15(&#x0002B;)]</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">1. Age-dependent degeneration of DA neurons due to overexpression of LRRK2 (G2019S).</td>
<td valign="top" align="left">1. Basal response to food.</td>
<td valign="top" align="left">Yao et al., <xref ref-type="bibr" rid="B258">2010a</xref>; Yao C. et al., <xref ref-type="bibr" rid="B260">2013</xref></td>
</tr>
<tr>
<td/>
<td/>
<td/>
<td valign="top" align="left">2. Estimation of DA content.</td>
<td valign="top" align="left">2. Locomotion.</td>
<td/>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">MAB147</td>
<td valign="top" align="left">(mjaEx109) [djr-1.1p::GFP; rol6(su1006)]</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">Dauer dependant behavior.</td>
<td valign="top" align="left">Chen P. et al., <xref ref-type="bibr" rid="B39">2015</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">MAB82</td>
<td valign="top" align="left">(mjaEx050 [djr-1.2p::GFP; Rol 6(su1006)]; otls181)</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">Dauer dependant behavior.</td>
<td valign="top" align="left">Chen P. et al., <xref ref-type="bibr" rid="B39">2015</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">BR3646, BR3645</td>
<td valign="top" align="left">(pha-1(e2123);byEx686[pink-1]),(pha-1(e2123);byEx687[pink-1])</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Mitchondrial homeostasis and oxidative stress response.</td>
<td valign="top" align="left">Fecundity.</td>
<td valign="top" align="left">S&#x000E4;mann et al., <xref ref-type="bibr" rid="B190">2009</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">Not published</td>
<td valign="top" align="left">dat-1p::GFP &#x0002B; dat-1p::&#x003B1;&#x02013;synco-expressed with dat-1p::FLAG-W08D2.5</td>
<td valign="top" align="left">No</td>
<td valign="top" align="left">Age-dependent degeneration of DA neurons due to over-expression of &#x003B1;-synuclein.</td>
<td valign="top" align="left">Not reported.</td>
<td valign="top" align="left">Gitler et al., <xref ref-type="bibr" rid="B76">2009</xref></td>
</tr>
<tr style="border-top: thin solid #000000;">
<td valign="top" align="left">VC1024</td>
<td valign="top" align="left">pdr-1 (gk448) III</td>
<td valign="top" align="left">Yes</td>
<td valign="top" align="left">Not done.</td>
<td valign="top" align="left">Basal response to food.</td>
<td valign="top" align="left">Martinez-Finley et al., <xref ref-type="bibr" rid="B145">2013</xref></td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s2">
<title><italic>Caenorhabditis elegans</italic> models of Parkinson&#x00027;s disease</title>
<p>In this section, we discuss the link between genetic and environmental factors and PD. All existing <italic>C. elegans</italic> models are the result of genetic manipulation or exposure to toxic chemicals.</p>
<sec>
<title>Genetic <italic>C. elegans</italic> models linked to familial PD</title>
<p>Over the last decade, transgenic models of <italic>C. elegans</italic> have been successfully used to study PD-like pathologies and behaviors (Caldwell and Caldwell, <xref ref-type="bibr" rid="B32">2008</xref>; Harrington et al., <xref ref-type="bibr" rid="B89">2010</xref>). In humans, monogenic forms of PD, caused by a single gene mutation in a dominant or recessive fashion, are well-established, though relatively rare types of the disease. They account for approximately 30% of the familial cases (Klein and Westenberger, <xref ref-type="bibr" rid="B118">2012</xref>).</p>
<sec>
<title>Alpha-synuclein</title>
<p>Alpha-synuclein is a small, highly soluble, predominantly presynaptic cytoplasmic protein composed of 140 amino acids with three domains. It is highly conserved in vertebrates and has been implicated in PD and other synucleinopathies (Snead and Eliezer, <xref ref-type="bibr" rid="B215">2014</xref>). In humans, &#x003B1;-synuclein is largely present in the brain, with smaller amounts also present in the heart, muscles, and other tissues (Xu and Pu, <xref ref-type="bibr" rid="B256">2016</xref>). While the normal physiological structure and function of &#x003B1;-synuclein is unclear, studies suggest that it is important for compartmentalization, storage, and recycling of neurotransmitters (Lee et al., <xref ref-type="bibr" rid="B127">2002</xref>). In addition, &#x003B1;-synuclein can regulate a variety of enzymes, is thought to increase the number of dopamine transporters, and has molecular chaperone activity, which is linked to neurotransmitter release (Nemani et al., <xref ref-type="bibr" rid="B169">2010</xref>). The &#x003B1;-synuclein gene, <italic>SNCA</italic>, is causatively related to PD and its mutation was the first gene to be linked to the disease (Polymeropoulos et al., <xref ref-type="bibr" rid="B180">1997</xref>). Mutations in <italic>SNCA</italic>, including rare point mutations in the N-terminal domain of &#x003B1;-synuclein as well as duplications and triplications of wild-type &#x003B1;-synuclein cause familial forms of PD in humans (Ross et al., <xref ref-type="bibr" rid="B187">2008</xref>; Klein and Westenberger, <xref ref-type="bibr" rid="B118">2012</xref>; Singleton et al., <xref ref-type="bibr" rid="B212">2013</xref>).</p>
<p><italic>Caenorhabditis elegans</italic> do not have an &#x003B1;-synuclein homolog. Thus, to study the pathogenicity of &#x003B1;-synuclein overexpression and aggregation in PD, several transgenic <italic>C. elegans</italic> strains with human &#x003B1;-synuclein have been created. These strains are particularly useful for studying the toxicity of protein aggregates, and cellular and behavioral abnormalities (Hamamichi et al., <xref ref-type="bibr" rid="B88">2008</xref>; van Ham et al., <xref ref-type="bibr" rid="B239">2008</xref>). Strains OW13 ([unc-54p::&#x003B1;-synuclein::YFP &#x0002B; unc-119(&#x0002B;)]), NL5901 ([unc-54p::&#x003B1;-synuclein::YFP&#x0002B;unc-119(&#x0002B;)]), and DDP1 (uonEx1[unc-54p::&#x003B1;-synuclein::CFP &#x0002B; unc-54::&#x003B1;-synuclein::YFP(Venus)] express &#x003B1;-synuclein in body wall muscle cells (van Ham et al., <xref ref-type="bibr" rid="B239">2008</xref>; Bodhicharla et al., <xref ref-type="bibr" rid="B24">2012</xref>). In these strains, the human &#x003B1;-synuclein gene is fused to yellow fluorescent protein (YFP), which drives the expression of &#x003B1;-synuclein in the body wall muscle cells under the control of the <italic>unc-54</italic> promoter (Hamamichi et al., <xref ref-type="bibr" rid="B88">2008</xref>; van Ham et al., <xref ref-type="bibr" rid="B239">2008</xref>; Bodhicharla et al., <xref ref-type="bibr" rid="B24">2012</xref>). These strains have been used to study &#x003B1;-synuclein aggregation, changes in movement, animal behavior and genes that modulate these and other PD-related hallmarks. For example, the brains of PD patients contain electron-dense filamentous and granular protein inclusions filled with aggregated protein. Similarly, <italic>C. elegans</italic> body wall muscle cells accumulate clearly visible aggregates with age, providing a defined target for screening of candidate genes via RNAi. Van Ham and colleagues have identified 80 suppressors of inclusion formation, with 49 of these genes having an established human ortholog. These authors also found an increase in the number of &#x0201C;immobile&#x0201D; inclusions relative to &#x0201C;mobile&#x0201D; inclusions during aging (van Ham et al., <xref ref-type="bibr" rid="B239">2008</xref>). The accumulation of &#x003B1;-synuclein aggregates in these strains is associated with locomotory and movement impairments (Bodhicharla et al., <xref ref-type="bibr" rid="B24">2012</xref>) providing additional screening targets. All three strains containing &#x003B1;-synuclein in body wall muscle cells are available from the <italic>Caenorhabditis</italic> Genetics Center at the University of Minnesota for a nominal shipping charge (see Table <xref ref-type="table" rid="T1">1</xref>).</p>
<p>In addition to strains that overexpress &#x003B1;-synuclein in body wall muscle cells, strains that overexpress wild-type or mutant (A53T) human &#x003B1;-synuclein in dopaminergic neurons have been generated by multiple research groups (Lakso et al., <xref ref-type="bibr" rid="B124">2003</xref>; Kuwahara et al., <xref ref-type="bibr" rid="B120">2006</xref>, <xref ref-type="bibr" rid="B121">2008</xref>; Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>). In these models, the dopamine transporter promoter <italic>dat-1</italic> is fused to GFP, following co-expression of wild-type or mutant (A53T) &#x003B1;-synuclein and GFP. The A53T mutation causes a change from alanine to threonine at position 53, is highly penetrant, and is associated with the autosomal dominant form of PD (Polymeropoulos et al., <xref ref-type="bibr" rid="B180">1997</xref>; Lakso et al., <xref ref-type="bibr" rid="B124">2003</xref>). In <italic>C. elegans</italic> expressing both wild-type and mutant &#x003B1;-synuclein, neuronal abnormalities, including accumulation of aggregates and cell loss were observed in some or all dopaminergic neurons, typically in an age-dependent manner (Lakso et al., <xref ref-type="bibr" rid="B124">2003</xref>; Kuwahara et al., <xref ref-type="bibr" rid="B120">2006</xref>, <xref ref-type="bibr" rid="B121">2008</xref>; Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>). Moreover, neurodegeneration of dopamine neurons was enhanced in transgenic lines in which mRNA levels of &#x003B1;-synuclein were expressed at higher levels (Dexter et al., <xref ref-type="bibr" rid="B51">2012</xref>).</p>
<p>In humans, fibrils of &#x003B1;-synuclein aggregate to form Lewy bodies, intracellular inclusions of protein complexes made of &#x003B1;-synuclein aggregates and other components such as neurofilaments, lipids and membrane materials (Spillantini et al., <xref ref-type="bibr" rid="B219">1997</xref>; van Ham et al., <xref ref-type="bibr" rid="B239">2008</xref>). Lewy bodies are a major hallmark of PD. When human &#x003B1;-synuclein is expressed in <italic>C. elegans</italic> dopaminergic neurons, expression as inclusion bodies is rare and aggregation of &#x003B1;-synuclein is not observed in Western blots (Lakso et al., <xref ref-type="bibr" rid="B124">2003</xref>). However, &#x003B1;-synuclein misfolding can be followed in body wall muscle cells as translational fusion YFP inclusions. In strains NL5901, OW13, and DDP1, which express these inclusions, &#x003B1;-synuclein aggregates and leads to toxicity with age. Importantly, large-scale reverse genetic RNAi screens have revealed enhancers and suppressors of &#x003B1;-synuclein misfolding, including genes that protect against &#x003B1;-synuclein neurodegeneration when co-expressed with &#x003B1;-synuclein in dopaminergic neurons (Hamamichi et al., <xref ref-type="bibr" rid="B88">2008</xref>; van Ham et al., <xref ref-type="bibr" rid="B239">2008</xref>).</p>
</sec>
<sec>
<title>LRK-1 and PINK-1</title>
<p>In PD patients, mutations in the multi-domain protein leucine-rich repeat kinase 2 (LRRK2) are the most common genetic risk factors for both familial and sporadic PD, accounting for 4% of familial and 1% of sporadic PD across all populations (Healy et al., <xref ref-type="bibr" rid="B92">2008</xref>). Mutations are prevalent within the GTPase (R1441C/G) and kinase (G2019S) domains of LRRK2. The normal function of LRRK2 is an area of active investigation, with research suggesting remarkably diverse pathways including regulation of transcription (Kanao et al., <xref ref-type="bibr" rid="B113">2010</xref>), translation (Imai et al., <xref ref-type="bibr" rid="B101">2008</xref>), apoptosis (Ho et al., <xref ref-type="bibr" rid="B96">2009</xref>), and mitochondrial function (Smith et al., <xref ref-type="bibr" rid="B214">2005</xref>). LRRK2 is consistently located at intracellular membranous structures including mitochondria (West et al., <xref ref-type="bibr" rid="B252">2005</xref>; Biskup et al., <xref ref-type="bibr" rid="B19">2006</xref>; Gloeckner et al., <xref ref-type="bibr" rid="B79">2006</xref>; Hatano et al., <xref ref-type="bibr" rid="B90">2007</xref>), the endo-lysosomal system (Alegre-Abarrategui et al., <xref ref-type="bibr" rid="B2">2009</xref>), the endoplasmic reticulum (ER) (Gloeckner et al., <xref ref-type="bibr" rid="B79">2006</xref>; Vitte et al., <xref ref-type="bibr" rid="B247">2010</xref>), and Golgi <italic>C. elegans</italic> (Biskup et al., <xref ref-type="bibr" rid="B19">2006</xref>; Gloeckner et al., <xref ref-type="bibr" rid="B79">2006</xref>; Hatano et al., <xref ref-type="bibr" rid="B90">2007</xref>).</p>
<p>In <italic>C. elegans</italic>, the <italic>lrk-1</italic> gene is homologous to mammalian <italic>LRRK1</italic> and <italic>LRRK2</italic>, human and mouse leucine-rich repeat kinases, respectively. LRRK1 is necessary for polarized localization of synaptic vesicle proteins to presynaptic regions (Shin et al., <xref ref-type="bibr" rid="B210">2008</xref>; Esposito et al., <xref ref-type="bibr" rid="B59">2012</xref>). LRK-1 is expressed in many tissues, including head and tail neurons, hypodermis, intestine and muscles, and localizes to the Golgi apparatus (S&#x000E4;mann et al., <xref ref-type="bibr" rid="B190">2009</xref>).</p>
<p>Two types of <italic>C. elegans</italic> genetic models have been used to study the leucine-rich repeat kinase and its contribution to PD-like symptoms. In the first, two <italic>lrk-1</italic> mutant strains that each contain severe loss-of-function alleles (<italic>tm1898)</italic> and (<italic>km41</italic>) that express truncated LRK-1 proteins consisting of the N-terminal ankyrin repeat, have been used to study <italic>pink-1</italic>, a PTEN-induced kinase and homolog of the PD-related human <italic>PINK1</italic>. Both alleles of <italic>lrk-1</italic> suppressed the paraquat sensitivity of <italic>pink-1</italic>(<italic>tm1779</italic>) mutants to restore survival to wild-type levels (paraquat toxicity is detailed in the Insecticides and Herbicides subsection of the Toxin-Induced Models section below). <italic>Lrk-1</italic>(<italic>tm1898</italic>) also suppressed the mitochondrial cristae defects of <italic>pink-1</italic>(<italic>tm1779</italic>) animals to wild-type levels suggesting that genetic deletion of <italic>lrk-1</italic> could compensate for both the oxidative stress sensitivity and the mitochondrial integrity observed in a <italic>pink-1</italic> loss-of-function allele. Interestingly, both <italic>C. elegans lrk-1</italic> allele mutants are not sensitive to paraquat and have an intact mitochondrial cristae, but exhibit an enhanced sensitivity to ER stress that can be rescued by <italic>pink-1(tml779)</italic>. Moreover, both <italic>lrk-1</italic> mutations suppressed <italic>pink-1(tml779)</italic>-mediated axon guidance defects suggesting that LRK-1 and PINK-1 act antagonistically in stress response and neurite outgrowth (S&#x000E4;mann et al., <xref ref-type="bibr" rid="B190">2009</xref>). These results link <italic>pink-1</italic>/PINK1 and <italic>lrk-1</italic>/LRRK2 function to the pathological processes involved in PD, and highlight stress sensitivity and cytoskeletal defects as factors that may contribute to the onset of PD.</p>
<p>In the second approach, human wild-type and mutant G2019S and R1441C LRRK2 have been overexpressed in dopaminergic neurons of <italic>C. elegans</italic> under the expression of the dopamine transporter <italic>dat-1</italic> promoter co-injected with dat-1p::GFP to generate [dat-1p::GFP, dat-1p::LRRK2(WT), lin-15(&#x0002B;)] and [dat-1p::GFP, dat-1p::LRRK2(G2019S), lin-15(&#x0002B;)] (Yao et al., <xref ref-type="bibr" rid="B259">2010b</xref>; Yao S. C. et al., <xref ref-type="bibr" rid="B261">2013</xref>; Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>). Overexpression of these LRRK2 proteins caused age-dependent degeneration of dopaminergic neurons, behavioral deficits, locomotory dysfunction, and reduced dopamine levels in transgenic models of <italic>C. elegans</italic>. In comparison to the overexpression of wild-type LRRK2, R1441C and G2019S mutants showed more severe phenotypes. Treatment with exogenous dopamine rescued the LRRK2-induced behavioral and locomotory deficits (Yao et al., <xref ref-type="bibr" rid="B259">2010b</xref>; Yao S. C. et al., <xref ref-type="bibr" rid="B261">2013</xref>).</p>
</sec>
<sec>
<title>PDR-1</title>
<p>Some autosomal recessive forms of PD are associated with mutations in PARKIN (<italic>PARK2)</italic>, an E3 ubiquitin ligase that is important for neuronal protein homeostasis (L&#x000FC;cking et al., <xref ref-type="bibr" rid="B142">2000</xref>; Bonifati et al., <xref ref-type="bibr" rid="B25">2003</xref>; Valente et al., <xref ref-type="bibr" rid="B236">2004</xref>; Trempe and Fon, <xref ref-type="bibr" rid="B232">2013</xref>). In <italic>C. elegans</italic>, the <italic>PARK2</italic> homolog <italic>pdr-1</italic> is an essential component in the degradation machinery during the response to proteotoxic stressors (Springer et al., <xref ref-type="bibr" rid="B221">2005</xref>). Specifically, <italic>pdr-1</italic> was shown to play a role in the UPR pathway, and co-expression of mutant &#x003B1;-synuclein A53T and truncated <italic>pdr-1</italic> exacerbated mutant &#x003B1;-synuclein-induced toxicity in a UPR-independent way (Springer et al., <xref ref-type="bibr" rid="B221">2005</xref>). Previously, Morimoto and colleagues showed that heat shock proteins and molecular chaperones play an important role in maintaining protein homeostasis (Morimoto et al., <xref ref-type="bibr" rid="B160">1997</xref>; Morimoto, <xref ref-type="bibr" rid="B159">2008</xref>). Failure of these proteins to prevent misfolding and clearance of toxic aggregated proteins disrupts protein homeostasis and contributes to aging in <italic>C. elegans</italic> (Satyal et al., <xref ref-type="bibr" rid="B196">2000</xref>; David et al., <xref ref-type="bibr" rid="B48">2010</xref>). Conversely, overexpression of chaperones can improve proteostasis and reduce aggregation in protein misfolding diseases (Calamini et al., <xref ref-type="bibr" rid="B31">2011</xref>). Recently, a new proteostasis mechanism of protein clearance for toxic, misfolded, and aggregated proteins in <italic>C. elegans</italic> neurons was proposed by Melentijevic et al. (<xref ref-type="bibr" rid="B150">2017</xref>). In this model, extracellular vesicles called exophers pinch off from the soma of some types of neurons to jettison toxic protein aggregates and damaged organelles including mitochondria and lysosomes for downstream degradation. The authors note that fluorescently-labeled touch receptor neurons of animals that have a <italic>pdr-1(gk448)</italic> mutant genetic background or those treated with <italic>pink-1</italic> RNAi produce significantly more exophers than animals of a wild-type background (Melentijevic et al., <xref ref-type="bibr" rid="B150">2017</xref>). These observations suggest that impaired mitochondrial genes linked to PD can increase exopher production and provide a potential new area of investigation for cellular hallmarks of PD (Melentijevic et al., <xref ref-type="bibr" rid="B150">2017</xref>).</p>
</sec>
<sec>
<title>DJR-1.1 and DJR-1.2</title>
<p>In humans, the <italic>DJ-1</italic> gene is causally linked to familial PD (Bonifati et al., <xref ref-type="bibr" rid="B25">2003</xref>). First identified as an oncogene (Nagakubo et al., <xref ref-type="bibr" rid="B164">1997</xref>), its functions include transcriptional regulation, antioxidant activity (in particular after toxic insults), chaperone activity, protease cleavage, and mitochondrial regulation. DJ-1 activity is regulated by its oxidative status and excess oxidation renders the protein inactive, a hallmark observed in patients with sporadic and familial PD as well as some patients with Alzheimer&#x00027;s disease (Choi et al., <xref ref-type="bibr" rid="B42">2006</xref>). DJ-1 can also act as a stress sensor and its expression is increased with stresses such as oxidative stress (Ariga et al., <xref ref-type="bibr" rid="B5">2013</xref>). <italic>C. elegans</italic> have two <italic>DJ-1</italic> orthologs: <italic>djr-1.1</italic>, and <italic>djr-1.2</italic>; both encode a type of glyoxylase. This enzyme facilitates the removal of &#x003B1;-oxoaldehydes, byproducts of glucose oxidation, lipid peroxidation and DNA oxidation, which can react non-enzymatically with amino groups of proteins to form advanced glycation end-products (AGEs), which are linked to PD (Lee et al., <xref ref-type="bibr" rid="B129">2012</xref>). DJR-1.2 localizes to the cytosol and is expressed throughout life in a variety of cell and tissue types such as head neurons (including dopaminergic neurons), pharyngeal muscle, the ventral nerve cord, spermatheca, excretory canal cells, and coelomocytes. Manganese (Mn) (discussed in more detail in the Manganese subsection of the Toxin-Induced Models section below) is an essential nutrient needed for protein and energy metabolism, metabolic regulation, protection from reactive oxygen species (ROS), and enzymes function. Environmental exposure to large doses of Mn can lead to manganism, which shares multiple features with PD and is an established risk factor for PD occurrence (Aschner et al., <xref ref-type="bibr" rid="B7">2009</xref>). Previously, Benedetto and colleagues have shown that intracellular dopamine can lead to Mn-induced dopaminergic neurodegeneration in <italic>C. elegans</italic>, and that this process depends on a functional dopamine-reuptake transporter (DAT-1) and is associated with elevated oxidative stress and reduced lifespan (Benedetto et al., <xref ref-type="bibr" rid="B13">2010</xref>). Neuronal expression of DJR-1.2 in the head and ventral nerve chord neurons is elevated after exposure to acute Mn (Chen P. et al., <xref ref-type="bibr" rid="B39">2015</xref>) and <italic>djr-1.2</italic> is protective against Mn-induced dopaminergic toxicity in an age-dependent manner (Chen P. et al., <xref ref-type="bibr" rid="B39">2015</xref>). Specifically, deletion of <italic>djr-1.2</italic> decreases survival and dopamine-dependent dauer movement behavior after Mn exposure, and lifespan could be rescued by overexpression of <italic>djr-1.2</italic> or <italic>daf-16</italic> (Chen P. et al., <xref ref-type="bibr" rid="B39">2015</xref>) mitigating Mn-dependent lifespan reduction and dopamine signaling alterations, involving DAF-2/DAF-16 signaling. The <italic>C. elegans djr-1.1</italic>, also orthologous to <italic>DJ-1</italic>, localizes to the intestine and plays a primary role in protecting animals from glyoxal. Treatment of <italic>djr-1.1</italic>, and to a lesser extent <italic>djr-1.2</italic> deletion animals with glyoxal significantly improved their survival suggesting that this gene can protect animals from glyoxal-induced death (Lee et al., <xref ref-type="bibr" rid="B129">2012</xref>).</p>
</sec>
<sec>
<title>DAT-1 and CAT-2</title>
<p>The human dopamine transporter (DAT) pumps dopamine out of the synapse back into the cytosol where other transporters deliver it to specialized vesicles for storage and eventual release. Reuptake via DAT is a major mechanism through which dopamine is cleared from synapses. Dopaminergic neurons in the substantia nigra of PD patients express higher levels of DAT (Uhl, <xref ref-type="bibr" rid="B235">1998</xref>; Nass and Blakely, <xref ref-type="bibr" rid="B165">2003</xref>) and greater DAT levels are linked to reduced dopamine turnover and smaller changes in synaptic dopamine concentration (Longo et al., <xref ref-type="bibr" rid="B141">2017</xref>). This implies that an important functional role of DAT is to maintain relatively constant synaptic dopamine levels and to preserve dopamine in nerve terminals (Sossi et al., <xref ref-type="bibr" rid="B217">2007</xref>, <xref ref-type="bibr" rid="B218">2009</xref>; Lee et al., <xref ref-type="bibr" rid="B131">2008</xref>).</p>
<p>The eight dopaminergic neurons of <italic>C. elegans</italic> have been fluorescently tagged with GFP using the DAT-1 promoter in neuronal transgenic strains BZ555 ([dat-1p::GFP]), BY200 [dat-1p::GFP, pRF4(rol-6(su1006)], and TG2435 ([dat-1p::GFP &#x0002B; rol-6(su1006)]) (Nass et al., <xref ref-type="bibr" rid="B167">2002</xref>; Pu and Le, <xref ref-type="bibr" rid="B182">2008</xref>; Masoudi et al., <xref ref-type="bibr" rid="B147">2014</xref>; Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>). Studying these cells in a genetic background of overexpressed &#x003B1;-synuclein or after treatment with the environmental toxin 6-OHDA has revealed that DA neurons degenerate with age and identified alleles that confer 6-OHDA resistance (Nass et al., <xref ref-type="bibr" rid="B166">2005</xref>; Hamamichi et al., <xref ref-type="bibr" rid="B88">2008</xref>).</p>
<p>The <italic>C. elegans cat-2</italic> gene encodes tyrosine hydroxylase, a rate-limiting enzyme for dopamine synthesis (Sulston et al., <xref ref-type="bibr" rid="B222">1975</xref>; Omura et al., <xref ref-type="bibr" rid="B172">2012</xref>; Masoudi et al., <xref ref-type="bibr" rid="B147">2014</xref>). Overexpression of CAT-2 in <italic>C. elegans</italic> leads to age-dependent degeneration of dopaminergic neurons (Cao et al., <xref ref-type="bibr" rid="B34">2005</xref>; Masoudi et al., <xref ref-type="bibr" rid="B147">2014</xref>). Table <xref ref-type="table" rid="T1">1</xref> summarizes the most commonly used <italic>C. elegans</italic> strains for studying the molecular pathology and behavioral phenotypes of PD.</p>
</sec>
</sec>
<sec>
<title>Toxin-induced models</title>
<sec>
<title>MPTP and 6-OHDA</title>
<p>In addition to transgenic <italic>C. elegans</italic> models involving the overexpression or mutation of PD-linked genes to study the genetic causes of PD, environmental agents have also been used to study PD-related neuronal degeneration and cell death (Nass et al., <xref ref-type="bibr" rid="B167">2002</xref>; Pu and Le, <xref ref-type="bibr" rid="B182">2008</xref>; Ali and Rajini, <xref ref-type="bibr" rid="B3">2012</xref>; Zhou et al., <xref ref-type="bibr" rid="B264">2013</xref>). Previous studies have modeled the motor aspects of PD using <italic>in vivo</italic> exposure to toxins that cause an overload of ROS and disrupt the electron transport chain in mitochondria leading to neuronal abnormalities and eventually cell death (Varcin et al., <xref ref-type="bibr" rid="B240">2012</xref>; Dias et al., <xref ref-type="bibr" rid="B52">2013</xref>; Hwang, <xref ref-type="bibr" rid="B100">2013</xref>; Chege and Mccoll, <xref ref-type="bibr" rid="B38">2014</xref>). The best studied neurodegeneration-inducing chemicals in <italic>C. elegans</italic> PD models are the toxins 6-OHDA (6-hydroxydopamine) and MPTP (1-methyl-1, 2, 3, 6-tetrahydropyidine) (Nass et al., <xref ref-type="bibr" rid="B168">2001</xref> Chakraborty et al., <xref ref-type="bibr" rid="B35a">2013</xref>; Chen P. et al., <xref ref-type="bibr" rid="B39">2015</xref>).</p>
<p>MPTP was first identified as a PD-causing neurotoxin in humans in the 1980s after drug addicts in California inadvertently administered the agent in synthetic heroin (Langston et al., <xref ref-type="bibr" rid="B126">1983</xref>). MPTP is highly lipophilic and can cross the blood brain barrier. In the brain, it is converted to 1-methyl-4-phenylpyridinium ion (MPP&#x0002B;) by glial monoamine oxidase B (Smeyne et al., <xref ref-type="bibr" rid="B213">2005</xref>). MPP&#x0002B; exerts neuronal toxicity by inhibiting complex I of the mitochondrial electron transport chain to induce mitochondrial dysfunction, decreasing the mitochondrial DNA content, and impairing autophagic degradation (Zhu et al., <xref ref-type="bibr" rid="B265">2012</xref>; Miyara et al., <xref ref-type="bibr" rid="B157">2016</xref>). Braungart and colleagues showed that wild-type <italic>C. elegans</italic> treated with 1.4 mM MPP&#x0002B; at the L1 stage display developmental delays and exhibit an uncoordinated behavioral phenotype (twitcher and coiler) 3 days after treatment compared to untreated controls (Braungart et al., <xref ref-type="bibr" rid="B28">2004</xref>). Further, MPP&#x0002B; was actively taken up by the dopamine transporter and selectively degenerated dopaminergic neurons. In a screen that tested compounds for ameliorating the toxic effects of MPP&#x0002B;, two dopamine receptor agonists, lisuride and apomorphine, improved mobility and reduced coiling with no effect on development and mobility of wild-type animals, suggesting that improved symptoms resulted from the reduction of MPP&#x0002B; toxicity (Braungart et al., <xref ref-type="bibr" rid="B28">2004</xref>). Treating <italic>cat-2::GFP</italic> animals with 1.0 and 1.5 mM MPP&#x0002B;, degenerated dopaminergic neurons and led to reduced mobility (Braungart et al., <xref ref-type="bibr" rid="B28">2004</xref>).</p>
<p>6-OHDA was first isolated in the 1950s (Senoh and Witkop, <xref ref-type="bibr" rid="B205">1959</xref>; Senoh et al., <xref ref-type="bibr" rid="B204">1959</xref>); it has a chemical structure similar to dopamine but with the addition of a hydroxyl group that makes it toxic to dopaminergic neurons (Blesa et al., <xref ref-type="bibr" rid="B22">2012b</xref>). In PD research, the administration of 6-OHDA causes mitochondrial failure by inhibiting complex I of the mitochondrial electron transport chain. This results in ATP depletion and elevated oxidative stress, which ultimately leads to dopamine neuron damage (Glinka et al., <xref ref-type="bibr" rid="B77">1997</xref>, <xref ref-type="bibr" rid="B78">1998</xref>; Nass et al., <xref ref-type="bibr" rid="B167">2002</xref>; Meredith et al., <xref ref-type="bibr" rid="B152">2008</xref>; Pu and Le, <xref ref-type="bibr" rid="B182">2008</xref>; Meredith and Rademacher, <xref ref-type="bibr" rid="B151">2011</xref>; Ali and Rajini, <xref ref-type="bibr" rid="B3">2012</xref>; Thiele et al., <xref ref-type="bibr" rid="B228">2012</xref>). In <italic>C. elegans</italic>, 6-OHDA administration leads to the loss of GFP-labeled dopaminergic cell bodies and processes (Masoudi et al., <xref ref-type="bibr" rid="B147">2014</xref>). Interestingly, two dopamine D2 receptor agonists, bromocriptine and quinpirole, ameliorate 6-OHDA toxicity in a dose-dependent manner via receptor-independent mechanisms (Marvanova and Nichols, <xref ref-type="bibr" rid="B146">2007</xref>). CAT-2 overexpression confers resistance to 6-OHDA in wild-type and CAT-2 mutant backgrounds possibly due to reduced 6-OHDA uptake into dopaminergic neurons when excess dopamine is present (Masoudi et al., <xref ref-type="bibr" rid="B147">2014</xref>). Due to the conservation between mammalian and <italic>C. elegans</italic> dopamine receptors, these and other results from toxin-induced neurodegeneration studies in <italic>C. elegans</italic> may help shed light on novel mechanisms leading to dopaminergic neuroprotection (Chen Y. M. et al., <xref ref-type="bibr" rid="B41">2015</xref>).</p>
</sec>
<sec>
<title>Insecticides and herbicides</title>
<p>Rotenone (a broad spectrum insecticide), paraquat (an herbicide), and several other insecticides have been used to induce PD-like pathology in <italic>C. elegans</italic> (Ved et al., <xref ref-type="bibr" rid="B242">2005</xref>; Settivari et al., <xref ref-type="bibr" rid="B206">2009</xref>; VanDuyn et al., <xref ref-type="bibr" rid="B238">2010</xref>, <xref ref-type="bibr" rid="B237">2013</xref>; Jadiya and Nazir, <xref ref-type="bibr" rid="B104">2012</xref>; Jadiya et al., <xref ref-type="bibr" rid="B103">2012</xref>; Zhou et al., <xref ref-type="bibr" rid="B264">2013</xref>; Gonzalez-Hunt et al., <xref ref-type="bibr" rid="B81">2014</xref>). Both paraquat and rotenone trigger excessive ROS production in neurons, which leads to cellular damage (Ved et al., <xref ref-type="bibr" rid="B242">2005</xref>; Miller et al., <xref ref-type="bibr" rid="B155">2007</xref>; Tanner et al., <xref ref-type="bibr" rid="B225">2010</xref>, <xref ref-type="bibr" rid="B226">2011</xref>; Spivey, <xref ref-type="bibr" rid="B220">2011</xref>; Zhou et al., <xref ref-type="bibr" rid="B264">2013</xref>). <italic>Caenorhabditis elegans</italic> strains including BY250 (dat-1p:GFP), BZ555 (dat-1p:GFP), and UA57 ([dat-1p::GFP&#x0002B;dat-1p::cat-2]) can be exposed to these toxins to visualize and quantify abnormalities in neuronal morphology (Nass et al., <xref ref-type="bibr" rid="B167">2002</xref>; Pu and Le, <xref ref-type="bibr" rid="B182">2008</xref>; Liu et al., <xref ref-type="bibr" rid="B138">2015</xref>; Li H. et al., <xref ref-type="bibr" rid="B135">2016</xref>). Jadiya and colleagues selected specific neurotoxins to represent different pesticide classes including a botanical, an herbicide, a pesticide, a fungicide, an organophosphate, and a pyrethroid. The authors found that in strain NL5901 ([unc-54p::&#x003B1;-synuclein::YFP&#x0002B;unc-119(&#x0002B;)]), superoxide dismutase and heat shock protein genes exhibit a unique pattern of expression for each pesticide class (Jadiya and Nazir, <xref ref-type="bibr" rid="B104">2012</xref>; Jadiya et al., <xref ref-type="bibr" rid="B103">2012</xref>). In addition, rotenone significantly increased &#x003B1;-synuclein aggregation and oxidative stress, while reducing mitochondrial and lipid content in NL5901 animals (Jadiya and Nazir, <xref ref-type="bibr" rid="B104">2012</xref>).</p>
</sec>
<sec>
<title>Manganese</title>
<p>Mn is an essential transition metal required for growth, development and cellular homeostasis (Prohaska, <xref ref-type="bibr" rid="B181">1987</xref>; Takeda et al., <xref ref-type="bibr" rid="B224">2003</xref>). It is a co-factor for multiple enzymes such as Mn superoxide dismutase, pyruvate carboxylase, arginase, and glutamine synthase, and can substitute for magnesium (Mg) in enzymatic reactions catalyzed by kinases (Horning et al., <xref ref-type="bibr" rid="B98">2015</xref>). However, inhaling toxic levels of Mn can lead to nasal and pulmonary inflammation, renal dysfunction, and neurodegeneration (Aschner and Aschner, <xref ref-type="bibr" rid="B6">1991</xref>). For example, occupational exposure through Mn mining, steel manufacturing, and welding are linked to increased risk for parkinsonian syndrome (Myers et al., <xref ref-type="bibr" rid="B163">2003</xref>). Specifically, exposure to toxic levels of Mn can cause oxidative injury in the substantia nigra, the loss of dopaminergic neurons and phenotypes such as tremor, rigidity, and bradykinesia (Calne et al., <xref ref-type="bibr" rid="B33">1994</xref>; Olanow, <xref ref-type="bibr" rid="B171">2004</xref>). In <italic>C. elegans</italic>, Benedetto et al. found that extracellular and not intracellular dopamine is responsible for Mn-induced dopaminergic neurodegeneration, and that this process depends on a functional DAT-1 receptor and is linked to oxidative stress and lifespan reduction. Overexpression of the antioxidant transcription factor, SKN-1, reduces Mn toxicity, and dopamine-dependent Mn toxicity requires the NADPH dual-oxidase BLI-3. The authors proposed that <italic>in vivo</italic> BLI-3 (which has over 99% homology to the human DUOX genes) facilitates the conversion of extracellular dopamine into toxic reactive species, which get taken up by DAT-1 in dopaminergic neurons and cause oxidative stress and cell degeneration (Benedetto et al., <xref ref-type="bibr" rid="B13">2010</xref>). Mn neurotoxicity was also studied in genetic DJ-1 models of <italic>C. elegans</italic> exposed to Mn (Chen P. et al., <xref ref-type="bibr" rid="B39">2015</xref>); the results suggest that DJ-1 has a protective role and improves lifespan in Mn-exposed nematodes in an age-dependent manner.</p>
</sec>
</sec>
</sec>
<sec id="s3">
<title>Markers of pathology in genetic and toxin-induced PD <italic>C. elegans</italic> models</title>
<sec>
<title>Alpha-synuclein expression</title>
<p>To model &#x003B1;-synuclein aggregation and accumulation <italic>in vivo</italic>, researchers have generated transgenic <italic>C. elegans</italic> strains that express the human &#x003B1;-synuclein gene in body wall muscle cells and in neurons (Table <xref ref-type="table" rid="T1">1</xref>). In these models, increased or decreased fluorescence intensity associated with YFP linked to &#x003B1;-synuclein can be quantified to determine the levels of protein expression (Jadiya et al., <xref ref-type="bibr" rid="B102">2011</xref>; Jadiya and Nazir, <xref ref-type="bibr" rid="B104">2012</xref>; Fatima et al., <xref ref-type="bibr" rid="B60">2014</xref>; Fu et al., <xref ref-type="bibr" rid="B67">2014a</xref>; Chen Y. M. et al., <xref ref-type="bibr" rid="B41">2015</xref>; Liu et al., <xref ref-type="bibr" rid="B138">2015</xref>). Loss of fluorescence intensity indicates reduced protein expression, whereas increased fluorescence indicates increased &#x003B1;-synuclein expression. Such changes in protein expression can be visualized using microscopy (Figure <xref ref-type="fig" rid="F1">1</xref>) and analyzed using freely available programs such as FIJI (Schindelin et al., <xref ref-type="bibr" rid="B201">2012</xref>). Alterations in protein expression can also be assessed using techniques such as fluorescence resonance energy transfer (FRET) or fluorescence recovery after photobleaching (FRAP) (Bodhicharla et al., <xref ref-type="bibr" rid="B24">2012</xref>).</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Representative image of the head region of a day-7 adult of strain NL5901 ([unc-54p::&#x003B1;-synuclein::YFP&#x0002B;unc-119]), maintained at 22&#x000B0;C, showing &#x003B1;-synuclein protein expression in the body wall muscle cells. The white arrow indicates one of multiple visible protein aggregates. Scale bar, 50 &#x003BC;m; magnification, 50&#x000D7;. (Original image taken by the authors for this paper on a Zeiss LSM 510 laser scanning confocal microscope).</p></caption>
<graphic xlink:href="fgene-08-00077-g0001.tif"/>
</fig>
</sec>
<sec>
<title>Neuronal morphology</title>
<p>Aberrant neuronal morphologies caused by exposure to neurotoxins or heavy metals can be visualized using fluorescence microscopy and quantified by counting the types and frequencies of aberrations. Such investigations typically focus on dopaminergic neurons of the head, i.e., the four CEPs and two ADEs (Figures <xref ref-type="fig" rid="F2">2a,b</xref>). Aberrant morphologies include the loss of neuronal cell bodies (Figure <xref ref-type="fig" rid="F2">2c</xref>), the absence of neuronal processes, broken neurites (Figure <xref ref-type="fig" rid="F2">2d</xref>), shrinking of dendritic endings, and the appearance of vacuoles (Nass et al., <xref ref-type="bibr" rid="B167">2002</xref>; Pu and Le, <xref ref-type="bibr" rid="B182">2008</xref>; Yao et al., <xref ref-type="bibr" rid="B259">2010b</xref>; Masoudi et al., <xref ref-type="bibr" rid="B147">2014</xref>). In addition, neurons exposed to toxins may appear dark, rounded and/or small, exhibit neuritic blebbing (Figure <xref ref-type="fig" rid="F2">2e</xref>), and lose GFP expression (Nass et al., <xref ref-type="bibr" rid="B167">2002</xref>; Berkowitz et al., <xref ref-type="bibr" rid="B14">2008</xref>; Pu and Le, <xref ref-type="bibr" rid="B182">2008</xref>; VanDuyn et al., <xref ref-type="bibr" rid="B238">2010</xref>; Ali and Rajini, <xref ref-type="bibr" rid="B3">2012</xref>; Fu et al., <xref ref-type="bibr" rid="B67">2014a</xref>; Masoudi et al., <xref ref-type="bibr" rid="B147">2014</xref>). Selective degeneration can be scored based on any of these morphological changes or the absence of the neurons. In addition, <italic>C. elegans</italic> dopaminergic neurons that express human &#x003B1;-synuclein degenerate by mid-life (Hamamichi et al., <xref ref-type="bibr" rid="B88">2008</xref>). In contrast, most genetic mouse models of &#x003B1;-synuclein fail to show degeneration of dopamine neurons (Blesa et al., <xref ref-type="bibr" rid="B21">2012a</xref>; Blesa and Przedborski, <xref ref-type="bibr" rid="B23">2014</xref>).</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>Representative images of the head regions of day-5 adults of strain BZ555 ([dat-1p::GFP]), maintained at 22&#x000B0;C. The images show <bold>(a)</bold> six healthy dopaminergic neurons (four CEPs [white arrows] and two ADEs [yellow arrows]), <bold>(b)</bold> two intact cell processes or dendrites (white arrows) of the four CEP neurons, which extend from the pharynx to the tip of the nose <bold>(c)</bold> the shrinkage of a cell body (white arrow), <bold>(d)</bold> neuritic blebbing (white arrows), and <bold>(e)</bold> abrupt gaps or breaks in the dendrites or cell processes (white arrows) caused by 50 mM 6-OHDA. (Scale bars, 50 &#x003BC;m; magnification, 50&#x000D7;. Original image taken by the authors for this paper on a Zeiss LSM 510 laser scanning confocal microscope).</p></caption>
<graphic xlink:href="fgene-08-00077-g0002.tif"/>
</fig>
</sec>
<sec>
<title>Dopamine content</title>
<p>Dopamine reuptake transporters (DAT-1 in <italic>C. elegans</italic>) play a crucial role in the uptake of environmental toxins such as 6-OHDA and MPTP, which enter neurons, cause cell degeneration, and decrease the levels of endogenous dopamine (Gainetdinov et al., <xref ref-type="bibr" rid="B72">1997</xref>; Nass et al., <xref ref-type="bibr" rid="B167">2002</xref>; Pu and Le, <xref ref-type="bibr" rid="B182">2008</xref>; Ali and Rajini, <xref ref-type="bibr" rid="B3">2012</xref>; Masoudi et al., <xref ref-type="bibr" rid="B147">2014</xref>). The dopamine content in <italic>C. elegans</italic> treated with a neurotoxin can be measured by reverse phase high performance liquid chromatography (RP-HPLC) with electrochemical detection (Pehek et al., <xref ref-type="bibr" rid="B177">2005</xref>; Yao et al., <xref ref-type="bibr" rid="B259">2010b</xref>; Satapathy et al., <xref ref-type="bibr" rid="B195">2016</xref>). Reduced levels of dopamine and the resulting behavioral deficits are found in <italic>C. elegans</italic> overexpressing LRRK2 (both wild-type and mutated forms; Yao et al., <xref ref-type="bibr" rid="B259">2010b</xref>). LRRK2 animals have a 50&#x02013;72% reduction in dopamine levels compared to the wild-type control strain N2 (Yao et al., <xref ref-type="bibr" rid="B259">2010b</xref>).</p>
<p>An alternative method is to measure dopamine content using HPLC followed by the detection of chemiluminiscence (Kuwahara et al., <xref ref-type="bibr" rid="B120">2006</xref>; Tsunoda, <xref ref-type="bibr" rid="B234">2006</xref>; Fu et al., <xref ref-type="bibr" rid="B67">2014a</xref>). Post separation, colorimetric oxidation, fluorescence derivatization with ethylenediamine, and peroxyoxalate chemiluminiscence reaction detection are then performed on the extracts containing dopamine and its metabolites (Tsunoda, <xref ref-type="bibr" rid="B234">2006</xref>). This method is highly sensitive, with detection limits in the fentomolar range, and makes it possible to measure dopamine in small-volume samples. HPLC with chemiluminiscence was used to show reduced dopamine levels and a reduced locomotory phenotype in transgenic <italic>C. elegans</italic> strains expressing A30P or A53T mutant &#x003B1;-synuclein in dopamine neurons (Kuwahara et al., <xref ref-type="bibr" rid="B120">2006</xref>). In another study, the same technique revealed that the dopamine content of 6-OHDA-treated animals was 64% less than untreated controls (Fu et al., <xref ref-type="bibr" rid="B67">2014a</xref>). Interestingly, the levels of dopamine in 6-OHDA-treated animals are elevated after treatment with the natural compound n-butylidenephthalide (Fu et al., <xref ref-type="bibr" rid="B67">2014a</xref>). Additionally, using HPLC with UV detection, Ali and Rajini showed that the dopamine levels of MPTP and organophosphorous insecticide-exposed <italic>C. elegans</italic> are lower than in untreated controls (Ali and Rajini, <xref ref-type="bibr" rid="B3">2012</xref>).</p>
</sec>
<sec>
<title>Lipid content</title>
<p>Prior research suggests that the aggregation of &#x003B1;-synuclein oligomers is associated with lipid peroxidation due to ROS overload, which can alter cellular membrane composition (Binukumar et al., <xref ref-type="bibr" rid="B18">2010</xref>; Angelova et al., <xref ref-type="bibr" rid="B4">2015</xref>). In <italic>C. elegans</italic>, intracellular fat droplets can be stained with the fluorescent dye Nile red (a lipophilic stain that fluoresces in a lipid environment), visualized with fluorescence microscopy (Figure <xref ref-type="fig" rid="F3">3</xref>), and quantified by analyzing the fluorescence staining. Several studies have shown that the NL5901 and OW13 strains have lower Nile red fluorescence than wild-type control N2 animals of the same age, indicating a reduced lipid content in PD strains (Jadiya et al., <xref ref-type="bibr" rid="B102">2011</xref>; Jadiya and Nazir, <xref ref-type="bibr" rid="B104">2012</xref>; Fu et al., <xref ref-type="bibr" rid="B67">2014a</xref>). However, further investigation is warranted to describe the role of lipid content in <italic>C. elegans</italic> models of PD. For example, the lipid content of PD strains should be directly compared to their corresponding genetic controls, not just to wild-type N2 control strains. In addition, another widely used stain for measuring lipid content in <italic>C. elegans</italic>, Oil Red O, is a fat-soluble diazo dye that has been widely used to stain lipid droplets in mammalian cells and tissues, and has recently been applied to observing lipid stores in <italic>C. elegans</italic> (O&#x00027;Rourke et al., <xref ref-type="bibr" rid="B174">2009</xref>; Elle et al., <xref ref-type="bibr" rid="B58">2010</xref>; Wahlby et al., <xref ref-type="bibr" rid="B248">2014</xref>). This stain measures fat stores contained only in lipid droplets, which correlate well with biochemically-measured lipids (total fatty-acid methyl esters). Whereas Nile red primarily stains acidic lysosome-related gut granules in live or fixed animals (Elle et al., <xref ref-type="bibr" rid="B58">2010</xref>; Wahlby et al., <xref ref-type="bibr" rid="B248">2014</xref>), Oil Red O shows a better correlation with triglyceride levels. Depending on the solvent, Oil Red O can also stain cellular structures in non-adipogenic cell lineages (Elle et al., <xref ref-type="bibr" rid="B58">2010</xref>). Yen and colleagues showed that fixed, but not Nile red-fed (live) wild-type N2 animals reveal fat stores that match label-free coherent anti-Stokes Raman scattering (CARS) imaging or Oil Red O and Nile Red fixed imaging (Yen et al., <xref ref-type="bibr" rid="B262">2010</xref>). Another study by Barros and coworkers compared different methods (Nile red, BODIPY, Sudan Black and Oil Red O) to study the effect of dopamine signaling on fat content in <italic>C. elegans</italic>. Results showed similarity between fixative based dyes (Sudan Black and Oil Red O) and vital dyes (BODIPY and Nile Red) with smaller measurable decreases for the vital dyes (Barros et al., <xref ref-type="bibr" rid="B11a">2014</xref>). It will be interesting to further elucidate the role of lipid content in cellular hallmarks of PD by using these additional tools.</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p>Representative images of Nile red staining of lipid content in live, day-5 adult <italic>C</italic>.<italic> elegans</italic> in <bold>(a)</bold> a wild-type N2 animal under fluorescence microscopy and <bold>(b)</bold> an OW13 [unc-54p::&#x003B1;-synuclein::YFP &#x0002B; unc-119(&#x0002B;)] animal under fluorescence microscopy. Image <bold>(c)</bold> depicts an overlay of phase contrast and fluorescence microscopy of a wild-type N2 animal and <bold>(d)</bold> shows an overlay of phase contrast and fluorescence microscopy of an OW13 animal. Strains were maintained at 22&#x000B0;C. White arrows represent stained fat droplets. Scale bar, 50 &#x003BC;m; magnification, 60x. Original image taken by the authors for this paper on an Olympus FLUORVIEW FV10i confocal microscope.</p></caption>
<graphic xlink:href="fgene-08-00077-g0003.tif"/>
</fig>
</sec>
</sec>
<sec id="s4">
<title>Behavioral phenotyping</title>
<p>In humans, movement is controlled by synergistic inputs from the neuronal networks located in the substantia nigra of the ventral midbrain (Groves, <xref ref-type="bibr" rid="B86">1983</xref>). These nerve cells together form an intricate network of axonal processes that synapse with dendritic spines by innervating the basal ganglia (Pickel et al., <xref ref-type="bibr" rid="B178">1981</xref>; Freund et al., <xref ref-type="bibr" rid="B66">1984</xref>). Crosstalk between neurons of the substantia nigra and basal ganglia results in dopamine release, which plays a crucial role in modulating movement (Bernheimer et al., <xref ref-type="bibr" rid="B15">1973</xref>; Lanciego et al., <xref ref-type="bibr" rid="B125">2012</xref>). This modulation is lost in PD due to the loss or degeneration of the dopaminergic neurons in the substantia nigra, which leads to motor dysfunction (Greengard, <xref ref-type="bibr" rid="B84">2001</xref>). In spite of advancements in our understanding of the pathophysiology of PD and the development of several dopamine-based therapies, the exact molecular mechanisms by which dysfunctional dopaminergic systems lead to movement impairments in PD are not fully understood. In addition, dopamine also has been implicated in other functions such as eye movement, motor planning, learning, motivation, and addiction (Wise, <xref ref-type="bibr" rid="B255">2004</xref>; Schultz, <xref ref-type="bibr" rid="B203">2007</xref>). These multiple roles of dopamine in a complicated nervous system pose several questions about its precise role in movement-related disorders like PD. In <italic>C. elegans</italic>, the dopaminergic system has been well described and found to have structural and functional similarities to that of humans (Duerr et al., <xref ref-type="bibr" rid="B56">1999</xref>; Lee and Ambros, <xref ref-type="bibr" rid="B132">2001</xref>; Nass and Blakely, <xref ref-type="bibr" rid="B165">2003</xref>; Suo et al., <xref ref-type="bibr" rid="B223">2003</xref>; Chase et al., <xref ref-type="bibr" rid="B37">2004</xref>; Chase and Koelle, <xref ref-type="bibr" rid="B36">2007</xref>). In addition, some of the mechanisms of dopamine synthesis, storage, and transport in humans are conserved in <italic>C. elegans</italic>, and the nerve endings of dopaminergic neurons and synaptic vesicles have similar dopamine levels to those in mammalian neurons (Fuxe and Jonsson, <xref ref-type="bibr" rid="B70">1973</xref>; Bargmann, <xref ref-type="bibr" rid="B10">1998</xref>; Chege and Mccoll, <xref ref-type="bibr" rid="B38">2014</xref>). Studies have established that disrupting dopamine signaling can lead to behavioral phenotypic changes in <italic>C. elegans</italic> such as altered movement (Omura et al., <xref ref-type="bibr" rid="B172">2012</xref>), defecation (Vidal-Gadea and Pierce-Shimomura, <xref ref-type="bibr" rid="B244">2012</xref>), egg-laying (Weinshenker et al., <xref ref-type="bibr" rid="B251">1995</xref>), food sensing (Sawin et al., <xref ref-type="bibr" rid="B197">2000</xref>), and response to external environmental cues including ethanol and nonanol (Lee et al., <xref ref-type="bibr" rid="B128">2009</xref>; Kimura et al., <xref ref-type="bibr" rid="B117">2010</xref>). In <italic>C. elegans</italic>, dopamine also controls acclimatization to mechanical stimuli (Sanyal et al., <xref ref-type="bibr" rid="B193">2004</xref>), foraging (Hills et al., <xref ref-type="bibr" rid="B95">2004</xref>), and transitions between crawling and swimming behavior (Vidal-Gadea et al., <xref ref-type="bibr" rid="B245">2011</xref>).</p>
<sec>
<title>Basal slowing or food-sensing behavior</title>
<p>The locomotion rates of <italic>C. elegans</italic> change in the presence or absence of food, and feeding status. For example, well-fed, wild-type animals move more slowly in the presence of bacteria versus when there is no bacterial food source on the petri dish. This foraging behavior is dependent on dopaminergic neurons, which mechanically sense the presence and availability of bacterial food by its texture, and when food is present, decrease the animals&#x00027; locomotion (Sawin et al., <xref ref-type="bibr" rid="B197">2000</xref>). This slowing in response to abundant food in well-fed animals is called basal slowing. Deficits in dopaminergic function are associated with higher locomotion in the presence of food in well-fed animals, as evidenced by their lower basal slowing response (Yao et al., <xref ref-type="bibr" rid="B259">2010b</xref>; Chen et al., <xref ref-type="bibr" rid="B40">2013</xref>). Starved <italic>C. elegans</italic> slow down more dramatically in the presence of food, a phenomenon referred to as the enhanced slowing response, which ensures that the animals do not leave their newly found food source (Sawin et al., <xref ref-type="bibr" rid="B197">2000</xref>; Rivard et al., <xref ref-type="bibr" rid="B185">2010</xref>). Unlike basal slowing, which is controlled by dopaminergic neurons, the enhanced slowing response is regulated by serotonin (Sawin et al., <xref ref-type="bibr" rid="B197">2000</xref>).</p>
<p>To determine the basal slowing response, animals are washed in buffer (typically M9) and then transferred to NGM plates with or without OP50 bacterial lawns. Basal slowing, which is measured as the frequency of body bends, is then recorded for 20&#x02013;60 s and analyzed using data acquisition software as follows: (basal slowing &#x0003D; [rate of movement in the absence of food &#x02212; rate of movement in the presence of food]/rate of movement in the presence of food) (Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>). Basal slowing or food sensing behavior can also be measured as: (basal slowing &#x0003D; [movement rate of the animals in the presence of bacteria/movement rate in absence of bacteria] &#x000D7; 100) (Kuwahara et al., <xref ref-type="bibr" rid="B120">2006</xref>). The study by Cooper et al. used food-sensing behavior to assess the functional loss of dopamine neurons in <italic>C. elegans</italic> expressing the familial Parkinson mutant human &#x003B1;-synuclein in dopamine neurons. The results showed that <italic>C. elegans</italic> expressing either human mutant &#x003B1;-synuclein (A53T) or human mutant LRRK2 (G2019S) exhibited deficits in this dopamine-related behavior (Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>). This deficiency can be rescued by a mutation in the insulin-IGF1 receptor <italic>C. elegans</italic> ortholog, <italic>daf-2</italic>, a key modulator of aging pathways (Kenyon et al., <xref ref-type="bibr" rid="B116">1993</xref>). Interestingly, the overexpression of LRRK2 (both wild-type and G2019S mutated forms) and <italic>cat-2</italic> deletion disrupt the age-dependent basal slowing response. This diminished behavior can be rescued by treatment with exogenous dopamine (Yao et al., <xref ref-type="bibr" rid="B259">2010b</xref>; Johnson et al., <xref ref-type="bibr" rid="B109">2015</xref>).</p>
</sec>
<sec>
<title>Area-restricted searching (ARS) behavior</title>
<p>Area-restricted searching (ARS) is a foraging behavior in which wild-type animals minimize searching in areas that have abundant food and extend the search to larger areas when food is scarce. As the time since removal from food increases, animals turn less frequently towards the food (Hills et al., <xref ref-type="bibr" rid="B95">2004</xref>; Gray et al., <xref ref-type="bibr" rid="B83">2005</xref>; Chen et al., <xref ref-type="bibr" rid="B40">2013</xref>). This is a goal-directed behavior that involves dopamine signaling. Removing or damaging dopaminergic neurons can lead to abnormal or abolished ARS behavior. For example, ARS behavior was rescued by administering exogenous dopamine to animals with defective dopamine signaling (Hills et al., <xref ref-type="bibr" rid="B95">2004</xref>). ARS can be measured by transferring well-fed animals to NGM plates and videotaping them for 60 s after 5 and 30 min. The number of turns that exceed 90 degrees are counted from the tracks of each animal at each time-point (Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>). ARS is impaired in both &#x003B1;-synuclein and LRRK2 PD mutants (Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>). <italic>Daf-2</italic> mutations increase searching in both PD strains, suggesting a role for aging in modulating dopamine-dependent behaviors in nematode models of PD (Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>).</p>
</sec>
<sec>
<title>Chemotaxis assay</title>
<p><italic>Caenorhabditis elegans</italic> can sense and respond to a multitude of environmental cues. These responses can be both aversive and attractive (Bargmann, <xref ref-type="bibr" rid="B11">2006</xref>). For example, under standard laboratory culturing conditions, untreated wild-type (N2) animals avoid ethanol. However, when these animals are continuously exposed to ethanol, they develop a tolerance to and preference for ethanol, a response which is controlled by the dopamine system (Davies et al., <xref ref-type="bibr" rid="B47">2004</xref>; Lee et al., <xref ref-type="bibr" rid="B128">2009</xref>). Unlike wild-type animals, <italic>cat-2</italic> and <italic>tph-1</italic> mutants lacking a functional dopamine system do not develop an ethanol preference to chronic ethanol exposure (Lee et al., <xref ref-type="bibr" rid="B128">2009</xref>). Ethanol avoidance is significantly decreased in non-ethanol-pretreated animals that express human mutant &#x003B1;-synuclein and mutant LRRK2 compared to those expressing wild-type &#x003B1;-synuclein and wild-type LRRK2 (Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>). Interestingly, ethanol avoidance is restored in an &#x003B1;-synuclein mutant with a deletion of the <italic>daf-2</italic> gene, indicating that slowing aging also slows PD symptoms. To assay ethanol preference as a surrogate measure of the dopamine system, animals are incubated on an ethanol plate and transferred to assay plates that are divided into equal quadrants. Ethanol is provided in two quadrants, and animals are allowed to move freely for 30 min; the time preference for the quadrants is scored during this time. A preference index (PI) is calculated as ([number of animals in the ethanol quadrants]&#x02013;[number of animals in control quadrants])/the total number of animals tested (Lee et al., <xref ref-type="bibr" rid="B128">2009</xref>). This assay could also be used to assess the PI of PD animals with an impaired dopaminergic system caused by chemical exposure.</p>
<p>In <italic>C. elegans</italic>, the response to the aversive odorant nonanol is regulated by dopamine signaling (Bargmann, <xref ref-type="bibr" rid="B11">2006</xref>; Kimura et al., <xref ref-type="bibr" rid="B117">2010</xref>; Fatima et al., <xref ref-type="bibr" rid="B60">2014</xref>; Sashidhara et al., <xref ref-type="bibr" rid="B194">2014</xref>; Satapathy et al., <xref ref-type="bibr" rid="B195">2016</xref>). When a drop of nonanol is placed near the head of a wild-type worm, the worm senses it and moves away as a chemotactic &#x0201C;aversive&#x0201D; response. However, when its dopamine content is diminished, the animals take longer to respond to the chemical stimulus. The response time to nonanol is increased 2-fold in the &#x003B1;-synuclein overexpressing strain NL5901 after treatment with <italic>ida-1</italic> (ortholog of mammalian diabetes autoantigen IA-2) RNAi (Fatima et al., <xref ref-type="bibr" rid="B60">2014</xref>). In contrast, certain botanical compounds have shown to reduce the time required by both wild-type (N2 exposed to 6-OHDA/pesticide) and &#x003B1;-synuclein overexpressing strains (NL5901) to respond to nonanol (Sashidhara et al., <xref ref-type="bibr" rid="B194">2014</xref>; Satapathy et al., <xref ref-type="bibr" rid="B195">2016</xref>). This suggests that the &#x0201C;nonanol repulsion assay&#x0201D; can be used as an indirect measure of dopamine content in nematodes with impaired dopamine signaling.</p>
</sec>
<sec>
<title>Swim to crawl transition</title>
<p>Gait can be defined as alterations in the patterns of movement based on the environment currently occupied by an animal. In humans, the basal ganglia regulate motor movement during gait, which activates dopaminergic neurons (Marsden, <xref ref-type="bibr" rid="B144">1982</xref>; Mink and Thach, <xref ref-type="bibr" rid="B156">1991</xref>; Fukuyama et al., <xref ref-type="bibr" rid="B69">1997</xref>; Koepp et al., <xref ref-type="bibr" rid="B119">1998</xref>). In PD, dysfunction in the basal ganglia region contributes to impaired gait functions and rhythms (Morris et al., <xref ref-type="bibr" rid="B161">1996</xref>; Hausdorff et al., <xref ref-type="bibr" rid="B91">1998</xref>; Sofuwa et al., <xref ref-type="bibr" rid="B216">2005</xref>). Gaits in <italic>C. elegans</italic> are mainly characterized as crawling (on solid &#x0201C;agar&#x0201D; media) and swimming (in liquid media) (White et al., <xref ref-type="bibr" rid="B253">1986</xref>; Pierce-Shimomura et al., <xref ref-type="bibr" rid="B179">2008</xref>). On agar, nematodes move or crawl in a classical sinusoidal fashion. This changes to &#x0201C;thrashing&#x0201D; or swimming when the animals are moved to liquid media. The mechanisms behind this gait transition are unknown; however, roles for bioamine neurotransmitters such as dopamine and serotonin have been implicated (Mesce and Pierce-Shimomura, <xref ref-type="bibr" rid="B153">2010</xref>).</p>
<p>In <italic>C. elegans</italic>, dopamine is responsible for a wide array of behaviors including the gait transition from swim to crawl (Vidal-Gadea et al., <xref ref-type="bibr" rid="B245">2011</xref>). The activation of dopamine neurons by optogenetics confirmed that the switch from crawling to swimming involves signaling through D1-like dopamine receptors, which is similar to the pattern the animals exhibit when they crawl off the bacterial food source (Sawin et al., <xref ref-type="bibr" rid="B197">2000</xref>; Vidal-Gadea et al., <xref ref-type="bibr" rid="B245">2011</xref>). Under both conditions, dopamine functions by decreasing the speed of the animal&#x00027;s movement. Animals with impaired dopaminergic signaling can exhibit opposing behavioral phenotypes, and the genetic ablation of all dopaminergic neurons can impair the transitions between swimming and crawling and lead to paralysis in animals due to incessant swimming (the swimming-induced paralysis or SWIP phenotype; Vidal-Gadea et al., <xref ref-type="bibr" rid="B245">2011</xref>). The dopamine transporter DAT-1 plays an important role in dopamine reuptake and clearance. In animals that exert maximal physical activity during swimming, mutations in DAT-1 lead to SWIP (McDonald et al., <xref ref-type="bibr" rid="B148">2007</xref>). In humans, PD is characterized by impaired gait and the failure to transition between locomotory patterns (Jankovic, <xref ref-type="bibr" rid="B106">2008</xref>). The failure of <italic>C. elegans</italic> to transition between swimming and crawling when the dopamine system is impaired reinforces the validity of <italic>C. elegans</italic> PD models.</p>
<p>A swim-to-crawl assay involves growing animals on NGM plates seeded with OP50 bacteria and then changing the environmental conditions to affect movement. Such changes could include increasing or decreasing the viscosity of the medium or providing mechanical stimulation with magnetic particles, as described by Vidal-Gadea et al. (<xref ref-type="bibr" rid="B245">2011</xref>). Gait transitions are evaluated by video recording movement before and after altering the conditions. For swim-to-crawl transition, <italic>C. elegans</italic> lacking dopaminergic neurons will exhibit truncated movement upon transitioning from a liquid to an agar medium. Similarly, animals lacking the DAT-1 receptor accumulate high amounts of endogenous dopamine, which induces a switch from the swim to crawl phenotype before causing the SWIP phenotype (McDonald et al., <xref ref-type="bibr" rid="B148">2007</xref>; Vidal-Gadea et al., <xref ref-type="bibr" rid="B245">2011</xref>). In <italic>C. elegans</italic>, the swim-to-crawl assay has been used to demonstrate that the membrane protein tetraspanin (TSP-17) protects dopaminergic neurons against 6-OHDA-mediated neurodegeneration and the toxicity caused by increased concentrations of endogenous intracellular dopamine (Masoudi et al., <xref ref-type="bibr" rid="B147">2014</xref>).</p>
</sec>
<sec>
<title>Mechanosensory responses</title>
<p>Previous studies in <italic>C. elegans</italic> indicate that dopaminergic neurons are mechanosensory (Loer and Kenyon, <xref ref-type="bibr" rid="B140">1993</xref>; Liu and Sternberg, <xref ref-type="bibr" rid="B139">1995</xref>; Duerr et al., <xref ref-type="bibr" rid="B56">1999</xref>; Sawin et al., <xref ref-type="bibr" rid="B197">2000</xref>; Bettinger and McIntire, <xref ref-type="bibr" rid="B17">2004</xref>; Hills et al., <xref ref-type="bibr" rid="B95">2004</xref>; Sanyal et al., <xref ref-type="bibr" rid="B193">2004</xref>; Abdelhack, <xref ref-type="bibr" rid="B1">2016</xref>). Dopaminergic neurons respond to anterior touch stimulation (Sanders et al., <xref ref-type="bibr" rid="B192">2013</xref>). <italic>Caenorhabditis elegans</italic> lacking tyrosine hydroxylase (<italic>cat-2</italic> mutants) display defective food-sensing behavior because they fail to slow down when they encounter a bacterial food source. This basal slowing response is mediated by dopamine signaling and depends on physically touching the bacterial food source (Sawin et al., <xref ref-type="bibr" rid="B197">2000</xref>). Such interactions between dopamine and mechanosensory touch responses are not well understood. Nevertheless, these interactions appear to be necessary for regulating foraging in nematodes (Sawin et al., <xref ref-type="bibr" rid="B197">2000</xref>). This confirms a role for dopamine in modulating the response to a non-localized mechanical stimulus (such as taps) administered to the NGM plate (Sanyal et al., <xref ref-type="bibr" rid="B193">2004</xref>). Animals respond to external tapping by escalating their forward or backward motion. Repeated tapping attenuates the reversal frequencies and leads to habituation (Rose and Rankin, <xref ref-type="bibr" rid="B186">2001</xref>). The time required to respond to the tap can be used as a measure of dopaminergic function as the loss of dopaminergic function can alter this behavior (Sanyal et al., <xref ref-type="bibr" rid="B193">2004</xref>). Although this behavior has not yet been studied in animals with Parkinson&#x00027;s-like symptoms, mechanosensory touch responses have been studied in <italic>C. elegans</italic> neurodegenerative models of Huntington&#x00027;s disease, Alzheimer&#x00027;s disease, and tauopathies (Parker et al., <xref ref-type="bibr" rid="B176">2001</xref>; Miyasaka et al., <xref ref-type="bibr" rid="B158">2005</xref>; Gordon et al., <xref ref-type="bibr" rid="B82">2008</xref>). Therefore, this behavior can be used to assess healthy/impaired dopaminergic function in wild-type and PD animals using <italic>cat-2</italic> mutants as a negative control, since these mutants habituate to tapping faster than wild-type strains (Chen et al., <xref ref-type="bibr" rid="B40">2013</xref>).</p>
</sec>
<sec>
<title>Dauer-dependent behavior</title>
<p>Under favorable conditions, the life cycle of <italic>C. elegans</italic> includes the egg stage, four larval stages (L1-L4), and an adult stage, which is reproductive in hermaphrodites and lasts for 3&#x02013;5 days. When exposed to overcrowded conditions, limited food, or chemical or physical stressors, animals enter an alternative stage after L2 known as dauer diapause (Cassada and Russell, <xref ref-type="bibr" rid="B35">1975</xref>; Fielenbach and Antebi, <xref ref-type="bibr" rid="B61">2008</xref>). The entry to dauer is regulated by <italic>daf-16</italic> (forkhead box O or FOXO) and its upstream regulator <italic>daf-2</italic> (insulin receptor), which are important modulators of aging and lifespan (Kenyon et al., <xref ref-type="bibr" rid="B116">1993</xref>; Lee et al., <xref ref-type="bibr" rid="B133">2001</xref>). Although this behavior occurs independent of dopamine signaling, once the animals enter the arrest phase they respond to any changes in dopamine signaling by increasing their body movement (Gaglia and Kenyon, <xref ref-type="bibr" rid="B71">2009</xref>). Therefore, dauer movement assays can be used to assess this behavioral change. For example, dauer formation can be induced by exposing <italic>djr-1.2</italic> mutants to the heavy metal Mn, transferring them to NGM plates without bacterial food, and storing for 72 h (Chen P. et al., <xref ref-type="bibr" rid="B39">2015</xref>). The dauer diapause can then be determined using body movements which is defined as one complete body bend in forward or backwards direction in a 1 min duration (Gaglia and Kenyon, <xref ref-type="bibr" rid="B71">2009</xref>; Chen P. et al., <xref ref-type="bibr" rid="B39">2015</xref>). The <italic>cat-2</italic> deletion mutants that have diminished DA signaling are used as a positive control. Both <italic>djr-1.2</italic> and <italic>cat-2</italic> mutants exhibit increased dauer movement compared with controls. When exposed to Mn, the <italic>djr-1.2</italic> mutants show a further increase in movement compared with untreated controls, indicating reduced dopamine signaling (Chen P. et al., <xref ref-type="bibr" rid="B39">2015</xref>). However, this behavior can be rescued by the overexpression of DAF-16. This behavioral assay was also important for assessing the interactions between aging, a PD environmental risk factor (i.e., Mn), and the PD-associated homolog DJ-1 (Chen P. et al., <xref ref-type="bibr" rid="B39">2015</xref>).</p>
</sec>
<sec>
<title>Fecundity</title>
<p>Fecundity is an important assay for determining the egg-laying behavior of <italic>C. elegans</italic> and is controlled by dopamine (Schafer and Kenyon, <xref ref-type="bibr" rid="B200">1995</xref>; Weinshenker et al., <xref ref-type="bibr" rid="B251">1995</xref>). The exposure to environmental toxins can lead to changes in dopamine signaling, which in turn can alter fecundity or brood size in <italic>C. elegans</italic> (VanDuyn et al., <xref ref-type="bibr" rid="B238">2010</xref>). Fecundity can be measured by performing progeny count assays. Age-synchronous adults are placed on individual plates each day until they cease reproducing. The number of eggs or viable progeny is then counted. When the assays are performed by counting progeny, the plates are incubated at a specific temperature and the eggs are allowed to develop for 48 h before the brood size is determined (Hodgkin and Barnes, <xref ref-type="bibr" rid="B97">1991</xref>; Scerbak et al., <xref ref-type="bibr" rid="B198">2016</xref>). The assessment of brood size or total progeny has been performed in neurotoxin-treated (6-OHDA and insecticide) models (Satapathy et al., <xref ref-type="bibr" rid="B195">2016</xref>) and in different PD mutants (Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>) of <italic>C. elegans</italic>. LRRK2 mutants have decreased fecundity due to decreased levels of DA, and this decrease cannot not be rescued by the <italic>daf-2</italic> mutation (Yao et al., <xref ref-type="bibr" rid="B259">2010b</xref>; Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>). Also, a significant decrease in brood size (25&#x02013;31%) occurs in animals exposed to 6-OHDA, which can be slightly increased by curcumin treatment (Satapathy et al., <xref ref-type="bibr" rid="B195">2016</xref>). Overall, fecundity can be used to measure healthspan in wild-type and PD animals to assess the effects of experimental treatments on the overall pathology and behavioral phenotypes of <italic>C. elegans</italic>.</p>
</sec>
<sec>
<title>Rate of defecation</title>
<p>In <italic>C. elegans</italic>, defecation is a behavior controlled by a series of muscle contractions, i.e., a motor program that occurs in the intestinal &#x0201C;enteric&#x0201D; muscles of the animals. On average, it occurs every 50 s (Dal Santo et al., <xref ref-type="bibr" rid="B46">1999</xref>) and this cycle remains constant at 20&#x000B0;C. Dopamine has been implicated in controlling the defecation cycle (Weinshenker et al., <xref ref-type="bibr" rid="B251">1995</xref>; McDonald et al., <xref ref-type="bibr" rid="B149">2006</xref>; Vidal-Gadea and Pierce-Shimomura, <xref ref-type="bibr" rid="B244">2012</xref>). Previous studies have demonstrated that excess dopamine reduces the defecation rate by decreasing expulsion muscle contractions (Weinshenker et al., <xref ref-type="bibr" rid="B251">1995</xref>). Defecation is carried out in three steps: posterior body muscle contraction (pBoc), anterior body muscle contraction (aBoc), and expulsion muscle contraction (Branicky et al., <xref ref-type="bibr" rid="B27">2001</xref>; Kwan et al., <xref ref-type="bibr" rid="B122">2008</xref>). The length of the defecation cycle can be determined by viewing animals with a dissecting microscope and measuring the duration between two consecutive pBoc contractions in adult animals at 20&#x000B0;C or as specified (Branicky et al., <xref ref-type="bibr" rid="B27">2001</xref>; Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>). A recent study showed slower rates of defecation in &#x003B1;-synuclein and LRRK2 mutants compared to normal rates in <italic>cat-2</italic> mutants, suggesting that defecation behavior occurs independent of dopamine in these PD models (Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>). However, <italic>cat-2</italic> mutants may not completely lack dopamine (Sanyal et al., <xref ref-type="bibr" rid="B193">2004</xref>). The rate of defecation should be further investigated as an indicator of physiological outcome in PD animals.</p>
</sec>
<sec>
<title>Locomotion</title>
<p>In <italic>C. elegans</italic>, locomotion or motility is a useful marker to assess healthspan (Bansal et al., <xref ref-type="bibr" rid="B9">2015</xref>). The dorsal and ventral muscles coordinate to control the classical sinusoidal locomotion patterns in nematodes (Croll, <xref ref-type="bibr" rid="B45">1975</xref>; Donnelly et al., <xref ref-type="bibr" rid="B54">2013</xref>). Motility can be assessed in aged individuals using an A-B-C class-based system (Herndon et al., <xref ref-type="bibr" rid="B94">2002</xref>). Class A represents a normal sinusoidal pattern, class B represents spontaneous reversals or induced motion with gentle prodding, and class C represents no movement or only movement of the head in response to gentle prodding. These patterns are also influenced by the presence or absence of food and exposure to mechanical or chemical stimuli (Omura et al., <xref ref-type="bibr" rid="B172">2012</xref>). Studies have shown that disrupting DA signaling using genetic mutations or exposure to environmental toxins (6-OHDA or MPTP) can change the locomotory behavior of <italic>C. elegans</italic> (Ali and Rajini, <xref ref-type="bibr" rid="B3">2012</xref>; Cooper et al., <xref ref-type="bibr" rid="B44">2015</xref>; Liu et al., <xref ref-type="bibr" rid="B138">2015</xref>). Such altered behavior can be assessed by observing changes in the typical sinusoidal pattern, including irregular body bends or thrashing behavior. Body bends are counted as one muscle contraction that leads to a complete bend of the dorsal or ventral side of the animal (Ghosh and Emmons, <xref ref-type="bibr" rid="B75">2008</xref>). The term &#x0201C;thrashing&#x0201D; is used to define motility when nematodes are placed in a drop of liquid (e.g. M9 buffer), and it is determined by measuring the frequency of lateral movements or the direction of mid-body bending (Buckingham and Sattelle, <xref ref-type="bibr" rid="B29">2009</xref>). Locomotory behavior can be quantified by viewing or recording worm movements through a stereomicroscope. Numerous automated programs facilitate the analysis of digitally recorded data, including Worm Tracker 2.0, OptoTracker, The Parallel Worm Tracker, Nemo, Multimodal illumination and tracking system, the Multi Worm Tracker, and CoLBeRT (Husson et al., <xref ref-type="bibr" rid="B99">2013</xref>). Recently, a microfluidic device was also used to measure the locomotion of <italic>C. elegans</italic> using an electric signal (Jung et al., <xref ref-type="bibr" rid="B111">2016</xref>).</p>
</sec>
</sec>
<sec sec-type="conclusions" id="s5">
<title>Conclusions</title>
<p>Well-developed imaging techniques and genetic malleability make <italic>C. elegans</italic> a useful model for testing compounds to treat the cellular and related behavioral symptoms of PD and investigating the basic molecular mechanisms underlying potential therapeutic approaches. The pathological and behavioral markers discussed in this review could be useful for performing screening experiments and establishing crucial connections between PD-like pathology, possible susceptibility factors, and the mechanisms triggered by exposure to novel drug molecules.</p>
</sec>
<sec id="s6">
<title>Author contributions</title>
<p>MM and SM contributed equally to the concept, background research, and writing of the manuscript. EMV contributed to the background research, writing and editing of the manuscript. All authors made intellectual contributions, edited, and approved the manuscript for publication.</p>
<sec>
<title>Conflict of interest statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</sec>
</body>
<back>
<ack><p>The authors thank Mitchell Reed for his help with confocal microscopy.</p>
</ack>
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<fn fn-type="financial-disclosure">
<p><bold>Funding.</bold> This research was funded by grants from the National Institute of General Medical Sciences of the National Institutes of Health (1) under an Institutional Development Award (IDeA; grant number P20GM103395) and (2) under a Building Infrastructure Leading to Diversity Award (BUILD; three linked grants numbered RL5GM118990, TL4 GM118992, and 1UL1GM118991). The work is solely the responsibility of the authors and does not necessarily represent the official view of the National Institutes of Health. We thank the office of the Vice Chancellor of Research, Dr. Larry Hinzman, for funding associated with the publication costs of this article.</p>
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