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<journal-id journal-id-type="publisher-id">Front. Fungal Biol.</journal-id>
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<journal-title>Frontiers in Fungal Biology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Fungal Biol.</abbrev-journal-title>
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<issn pub-type="epub">2673-6128</issn>
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<publisher-name>Frontiers Media S.A.</publisher-name>
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<article-id pub-id-type="doi">10.3389/ffunb.2026.1732437</article-id>
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<subj-group subj-group-type="heading">
<subject>Review</subject>
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<title-group>
<article-title>The chitinolytic enzymes from the entomopathogenic fungus <italic>Metarhizium anisopliae</italic>: GH family distribution, domain architecture, and protein regulation</article-title>
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<contrib contrib-type="author" corresp="yes">
<name><surname>Al Abdallah</surname><given-names>Qusai</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>*</sup></xref>
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<contrib contrib-type="author">
<name><surname>Alananbeh</surname><given-names>Kholoud M.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
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<contrib contrib-type="author">
<name><surname>Al-Karablieh</surname><given-names>Nehaya</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
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<contrib contrib-type="author">
<name><surname>Araj</surname><given-names>Salah-Eddin</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
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<aff id="aff1"><label>1</label><institution>Department of Agricultural Biotechnology and Genetic Engineering, Faculty of Agricultural Technology, Al-Ahliyya Amman University</institution>, <city>Amman</city>,&#xa0;<country country="jo">Jordan</country></aff>
<aff id="aff2"><label>2</label><institution>Department of Plant Protection, School of Agriculture, The University of Jordan</institution>, <city>Amman</city>,&#xa0;<country country="jo">Jordan</country></aff>
<aff id="aff3"><label>3</label><institution>Hamdi Mango Center for Scientific Research, The University of Jordan</institution>, <city>Amman</city>,&#xa0;<country country="jo">Jordan</country></aff>
<author-notes>
<corresp id="c001"><label>*</label>Correspondence: Qusai Al Abdallah, <email xlink:href="mailto:q.alabdallah@ammanu.edu.jo">q.alabdallah@ammanu.edu.jo</email></corresp>
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<pub-date publication-format="electronic" date-type="pub" iso-8601-date="2026-02-17">
<day>17</day>
<month>02</month>
<year>2026</year>
</pub-date>
<pub-date publication-format="electronic" date-type="collection">
<year>2026</year>
</pub-date>
<volume>7</volume>
<elocation-id>1732437</elocation-id>
<history>
<date date-type="received">
<day>25</day>
<month>10</month>
<year>2025</year>
</date>
<date date-type="accepted">
<day>27</day>
<month>01</month>
<year>2026</year>
</date>
<date date-type="rev-recd">
<day>24</day>
<month>01</month>
<year>2026</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2026 Al Abdallah, Alananbeh, Al-Karablieh and Araj.</copyright-statement>
<copyright-year>2026</copyright-year>
<copyright-holder>Al Abdallah, Alananbeh, Al-Karablieh and Araj</copyright-holder>
<license>
<ali:license_ref start_date="2026-02-17">https://creativecommons.org/licenses/by/4.0/</ali:license_ref>
<license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License (CC BY)</ext-link>. The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p>
</license>
</permissions>
<abstract>
<p><italic>Metarhizium anisopliae</italic> is an entomopathogenic fungus that is widely used in the biological control of agricultural pests. During host infection, <italic>M. anisopliae</italic> secretes an arsenal of hydrolytic enzymes such as proteases and chitinases that allow for cuticle penetration and host colonization. The degradation of chitin into N-acetylglucosamine (GlcNAc) monomers is carried out by chitinases and &#x3b2;-N-acetylglucosaminidases (NAGases). Chitin-degrading enzymes of <italic>M. anisopliae</italic> have been the subject of extensive research; however, these studies have not been consolidated into a comprehensive review. This review highlights our current knowledge of the chitinolytic enzymes from <italic>M. anisopliae</italic>, emphasizing the classification of these enzymes based on their mode of action and domain architecture. <italic>M. anisopliae</italic> possesses a set of 21 chitinases that are classified into four glycoside hydrolase family 18 (GH18) subgroups: A, B, C, and D. In addition, <italic>M. anisopliae</italic> produces two GH20 and two GH3 NAGases. The domain architectures of chitinases and NAGases from <italic>M. anisopliae</italic> are highly similar to those found in <italic>Trichoderma</italic> spp. but exhibit some evolutionary distinctions. Moreover, this review integrates insights from other entomopathogenic fungi to identify molecular mechanisms underlying the expression of chitinase and NAGase genes in <italic>M. anisopliae</italic>. The regulatory mechanisms underlying gene expression of chitinolytic enzymes are complex and involve several regulators and metabolic pathways. Finally, chitinases have the potential to be used as biopesticides against fungal pathogens and pest infestations.</p>
</abstract>
<kwd-group>
<kwd>chitin</kwd>
<kwd>chitinases</kwd>
<kwd>entomopathogenicity</kwd>
<kwd>GH families</kwd>
<kwd><italic>Metarhizium anisopliae</italic></kwd>
<kwd>regulatory mechanisms</kwd>
<kwd>&#x3b2;-N-acetylglucosaminidases</kwd>
</kwd-group>
<funding-group>
<funding-statement>The author(s) declared that financial support was not received for this work and/or its publication.</funding-statement>
</funding-group>
<counts>
<fig-count count="4"/>
<table-count count="5"/>
<equation-count count="0"/>
<ref-count count="134"/>
<page-count count="17"/>
<word-count count="9166"/>
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<custom-meta-group>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Fungi-Animal Interactions</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Entomopathogenic fungi play an important role in the biological control of agricultural pests. They can cause diseases in insect populations and thereby improve crop yields. In addition, these fungi inhabit a wide range of habitats, enabling effective control of various pest species under field conditions (<xref ref-type="bibr" rid="B78">Moazami, 2011</xref>; <xref ref-type="bibr" rid="B62">Kumar et&#xa0;al., 2019</xref>).</p>
<p>Entomopathogenic fungi infect their insect hosts through a process that is broadly comparable to that used by plant-pathogenic fungi (reviewed by <xref ref-type="bibr" rid="B73">Ma et al., 2024</xref>). Infection begins when conidia attach to the insect cuticle and germinate to produce a germ tube. The germ tube tip then differentiates to form a specialized infection structure, designated appressorium, which secretes cuticle-degrading enzymes, including chitinases, proteases, and lipases, allowing for fungal penetration into the hemocoel (<xref ref-type="bibr" rid="B58">Khachatourians and Qazi, 2008</xref>; <xref ref-type="bibr" rid="B97">Santi et&#xa0;al., 2010a</xref>; <xref ref-type="bibr" rid="B24">Chethana et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B34">Gebremariam et&#xa0;al., 2022</xref>). Following successful invasion, the fungus proliferates within the host, producing mycotoxins and hydrolytic enzymes while assimilating host-derived nutrients, ultimately leading to insect death (<xref ref-type="bibr" rid="B18">Butt et&#xa0;al., 2016</xref>). Although several thousand entomopathogenic fungal species are thought to exist, only a small proportion has been studied in detail (<xref ref-type="bibr" rid="B13">Blackwell, 2011</xref>; <xref ref-type="bibr" rid="B99">Santos et&#xa0;al., 2022</xref>). Among these, <italic>Beauveria bassiana</italic> and <italic>Metarhizium anisopliae</italic> remain the most extensively investigated species (<xref ref-type="bibr" rid="B99">Santos et&#xa0;al., 2022</xref>).</p>
<p>
<italic>M. anisopliae</italic> is a saprophytic fungus that thrives on decaying organic matter and inhabits the soil of a wide range of habitats (<xref ref-type="bibr" rid="B79">Moonjely and Bidochka, 2019</xref>; <xref ref-type="bibr" rid="B120">Tang et&#xa0;al., 2025</xref>). The taxonomy of <italic>M. anisopliae</italic> has been recently addressed by few articles (<xref ref-type="bibr" rid="B12">Bischoff et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B59">Kobmoo et&#xa0;al., 2024</xref>; <xref ref-type="bibr" rid="B82">Nishi, 2024</xref>). In addition, it is a generalist entomopathogenic fungus that infects a broad spectrum of host insects (<xref ref-type="bibr" rid="B11">Bidochka et&#xa0;al., 1998</xref>; <xref ref-type="bibr" rid="B102">Schrank and Vainstein, 2010</xref>; <xref ref-type="bibr" rid="B116">St. Leger and Wang, 2020</xref>; <xref ref-type="bibr" rid="B27">de Miranda et&#xa0;al., 2024</xref>). During different stages of the disease cycle, <italic>M. anisopliae</italic> produces specialized cells such as appressorium, blastospores, and hyphae, which are used for host infection. The disease cycle of <italic>M. anisopliae</italic> is illustrated in Figure&#xa0;2 in <xref ref-type="bibr" rid="B102">Schrank and Vainstein (2010)</xref> and Figure&#xa0;1 in <xref ref-type="bibr" rid="B67">Li and Xia (2022)</xref>.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Schematic diagram for the hydrolysis of chitin by <italic>M. anisopliae</italic> enzymes. The endo-acting chitinases of subgroups B and D hydrolyze glycosidic bonds randomly, producing soluble short chains of GlcNAc oligomers (5&#x2013;10 GlcNAc units). The subgroups A and C exo-chitinases act on chitin terminal ends, releasing chitobioses (containing 2 GlcNAc molecules), chitotrioses (containing 3 GlcNAc molecules), and chitotetraoses (containing 4 GlcNAc molecules). The hydrolysis products are further hydrolyzed to GlcNAc by exo-chitinases and &#x3b2;-N-acetylglucosaminidases (NAGases). Although subgroup A chitinases are predicted to exhibit exo-acting activity, CHIT42 displays an endo-acting activity. CHI30, which belongs to the endo-acting subgroup B, exhibits a dual endo- and exo-chitinase activity.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="ffunb-07-1732437-g001.tif">
<alt-text content-type="machine-generated">Diagram illustrating chitin degradation to GlcNAc through several steps, showing enzyme actions with symbols and colors; legend identifies each enzyme type and GlcNAc with corresponding shapes and colors for reference.</alt-text>
</graphic>
</fig>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Domain architecture of chitinases and NAGase from <italic>M. anisopliae</italic>. SP, signal peptide; GH18, GH18 catalytic domain; GH20, GH20 catalytic domain; GH3, GH3 catalytic domain; GH20b, non-catalytic GH20b domain; CBM, carbohydrate-binding module; S/T region, Ser/Thr linker region; GPI anchor, GPI for anchoring protein to the plasma membrane.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="ffunb-07-1732437-g002.tif">
<alt-text content-type="machine-generated">Table summarizing glycoside hydrolase (GH) families GH18, GH20, and GH3, their subgroups, modular domain structures with colored domain icons, and example gene names. The GH18 section is subdivided into A, B, C, and D, each with specific arrangements of signal peptide (SP), catalytic domains, carbohydrate-binding modules (CBM), and additional regions such as S/T region and GPI anchor. GH20 and GH3 structures are shown separately with associated example genes.</alt-text>
</graphic>
</fig>
<p>The first genome sequence of <italic>M. anisopliae</italic> was published using the isolate ARSEF23 as a reference strain; however, this isolate was reclassified as <italic>Metarhizium robertsii</italic> (<xref ref-type="bibr" rid="B33">Gao et&#xa0;al., 2011</xref>). The complete genome sequence of <italic>M. anisopliae</italic> was repeated using the isolates E6 and Ma69 (<xref ref-type="bibr" rid="B88">Pattemore et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B112">Staats et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B51">Iwanicki et&#xa0;al., 2022</xref>). The genome size of <italic>M. anisopliae</italic> is about 38.5 Mb with 127 proteins that have no homologs in <italic>M. robertsii</italic> or <italic>M. acridum</italic> genome. The fungus produces 1620 secreted proteins, including an arsenal of proteases and chitinases that allow for cuticle penetration and host colonization (<xref ref-type="bibr" rid="B88">Pattemore et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B112">Staats et&#xa0;al., 2014</xref>). <italic>M. anisopliae</italic> chitinases are key players in fungal virulence against different stages of insect pests.</p>
<p>To understand their activity and specificity, chitinases from the entomopathogenic fungus <italic>M. anisopliae</italic> have been the subject of extensive studies that span biochemical characterization, structural analysis, and regulation of gene expression. However, comprehensive reviews that highlight these findings are lacking. The main objectives of this review are to (1) consolidate our current knowledge on chitin-hydrolyzing enzymes from <italic>M. anisopliae</italic>, including their glycoside hydrolase (GH) classification and domain architecture, and (2) identify conserved molecular mechanisms underlying chitinase gene expression using studies from other entomopathogenic fungi.</p>
</sec>
<sec id="s2">
<label>2</label>
<title>Chitin as a structural barrier in insect hosts</title>
<p>Insects have an external complex structure called the exoskeleton. The insect exoskeleton, which is also called the cuticle, is composed of two non-living layers: the epicuticle and the procuticle (<xref ref-type="bibr" rid="B22">Chen et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B3">Andersen, 2009</xref>; <xref ref-type="bibr" rid="B29">Doucet and Retnakaran, 2016</xref>; <xref ref-type="bibr" rid="B126">Vittori, 2024</xref>). The cuticle serves essential functions in insect support and protection. For example, it serves as an external framework that supports the body of insects and determines their shape. In addition, muscles are attached to the cuticle and thus aid in insects&#x2019; mobility. Furthermore, the exoskeleton operates as a barrier protecting insects from external environmental factors and physical damage (<xref ref-type="bibr" rid="B37">Gorb, 2001</xref>; <xref ref-type="bibr" rid="B124">Vincent, 2001</xref>; <xref ref-type="bibr" rid="B43">Hamid et&#xa0;al., 2013</xref>). The exoskeleton of insects generally contains 30% to 45% protein and 25% to 40% lipids. The chitin content in the exoskeleton varies among the species, ranging from 5 to 15% (<xref ref-type="bibr" rid="B52">Izadi et&#xa0;al., 2025</xref>).</p>
<p>Chitin is a linear polysaccharide of N-acetylglucosamine (<italic>abbr.:</italic> GlcNAc) repeating units that are linked by &#x3b2;-1,4-glycosidic bonds. Structurally, GlcNAc is similar to glucose but has an acetamide group at the C2 position instead of the hydroxyl group (<xref ref-type="bibr" rid="B54">Jones et&#xa0;al., 2020</xref>). Chitin exists in three allomorphic forms: &#x3b1;-chitin, &#x3b2;-chitin, and &#x3b3;-chitin, which differ in chain orientation and hydrogen bonding patterns, resulting in distinct mechanical properties. &#x3b1;-chitin consists of antiparallel chains stabilized by intra- and intermolecular hydrogen bonds, resulting in greater stiffness. In contrast, the structure of &#x3b2;-chitin consists of parallel chains connected via weak intermolecular hydrogen bonds. &#x3b2;-chitin exhibits a reduced stiffness that provides more flexibility compared to &#x3b1;-chitin. Both &#x3b1;-chitin and &#x3b2;-chitin are commonly found in arthropods. The structure of &#x3b3;-chitin exhibits a mixture of &#x3b1;- and &#x3b2;-chitin, and it is mainly found in fungi, yeasts, and insect cocoons. For a schematic representation of the three allomorphic forms of chitin, refer to Figure&#xa0;1 in <xref ref-type="bibr" rid="B75">Mei et&#xa0;al. (2024)</xref> and Figure&#xa0;4 in <xref ref-type="bibr" rid="B63">Kumirska et&#xa0;al. (2011)</xref>. Partial deacetylation of chitin results in the production of chitosan, which is a linear polymer of D-glucosamine and N-acetyl-D-glucosamine (<xref ref-type="bibr" rid="B2">Al-Nasrawi et&#xa0;al., 2024</xref>; <xref ref-type="bibr" rid="B1">Abdulhameed et&#xa0;al., 2025</xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Comparison of the domain architecture of the chitinolytic enzymes from <italic>M. anisopliae</italic>, <italic>Trichoderma</italic> spp., and <italic>Isaria cicadae</italic>. SP: signal peptide, GH18: GH18 catalytic domain, GH20: GH20 catalytic domain, GH3: GH3 catalytic domain, GH20b: non-catalytic GH20b domain, CBM: carbohydrate-binding module. Data were collected from <sup>A</sup> (<xref ref-type="bibr" rid="B55">Junges et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B83">Oliveira et&#xa0;al., 2018</xref>), <sup>B</sup> (<xref ref-type="bibr" rid="B105">Seidl et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B71">L&#xf3;pez-Mond&#xe9;jar et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B42">H&#xe4;kkinen et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B106">Seidl-Seiboth et&#xa0;al., 2014</xref>), and <sup>C</sup> (<xref ref-type="bibr" rid="B89">Peng et&#xa0;al., 2020</xref>).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="ffunb-07-1732437-g003.tif">
<alt-text content-type="machine-generated">Table summarizing the domain architectures of glycoside hydrolase (GH) family proteins for Metarhizium anisopliae, Trichoderma species, and Isaria cicadae, grouped by GH family and subgroup, with colored blocks representing protein domains such as SP, GH18, CBM1, CBM50, CBM18, GH20b, GH20, and GH3 across different protein arrangements.</alt-text>
</graphic>
</fig>
</sec>
<sec id="s3">
<label>3</label>
<title>Hydrolysis of chitin by chitinases and &#x3b2;-N-acetylglucosaminidases from <italic>M. anisopliae</italic></title>
<p>The degradation of chitin by fungal chitinolytic enzymes is a consecutive and coordinated multistep process that involves exo-chitinases, endo-chitinases, lytic polysaccharide monooxygenases (LPMOs), and &#x3b2;-N-acetylglucosaminidases (NAGases) (<xref ref-type="bibr" rid="B17">Busk and Lange, 2015</xref>). Chitinases also exhibit enzymatic activity against chitosan; however, such activity is strongly dependent on the degree of acetylation (<xref ref-type="bibr" rid="B45">Hartl et&#xa0;al., 2012</xref>). It should be mentioned that LPMOs will not be covered in this review because of a lack of sufficient data. In this review, the terms chitinolytic enzymes, chitin-degrading enzymes, and chitin-hydrolyzing enzymes are used interchangeably to refer to chitinases and NAGases.</p>
<p>The classification of chitinases can be based on either the mode of action or amino acid sequence similarities (<xref ref-type="bibr" rid="B46">Henrissat and Davies, 1997</xref>; <xref ref-type="bibr" rid="B93">Poria et&#xa0;al., 2021</xref>). The Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB) classifies chitinases based on their mode of action into endo-acting chitinases and exo-acting chitinases. Endo-acting chitinases (EC 3.2.1.14) cleave randomly along chitin internal chains, producing soluble N-acetylglucosamine oligomers (<xref ref-type="bibr" rid="B93">Poria et&#xa0;al., 2021</xref>). Exo-acting chitinases act on chitin terminal ends at the reducing end (EC 3.2.1.201) and the non-reducing end (EC 3.2.1.200), releasing chitobioses (contain two GlcNAc molecules), chitotrioses (contain three GlcNAc molecules), and chitotetraoses (contain four GlcNAc molecules). Chitin hydrolysis products are further cleaved by exo-chitinases and &#x3b2;-N-acetylglucosaminidases (NAGases) (EC 3.2.1.52) (<xref ref-type="bibr" rid="B45">Hartl et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B81">Muschiol et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B53">Jiang et&#xa0;al., 2025</xref>) (<xref ref-type="fig" rid="f1"><bold>Figure&#xa0;1</bold></xref>).</p>
<p>However, the IUBMB classification does not provide insight into enzymes structural features or predict their 3D structures (<xref ref-type="bibr" rid="B46">Henrissat and Davies, 1997</xref>). The Carbohydrate-Active Enzymes database (CAZy, <ext-link ext-link-type="uri" xlink:href="https://www.cazy.org/">https://www.cazy.org/</ext-link>) has, therefore, developed a classification system based on amino acid sequence similarity, enabling the grouping of enzymes with conserved structures and providing insights into protein structure and mechanism (<xref ref-type="bibr" rid="B46">Henrissat and Davies, 1997</xref>).</p>
<p>The class glycoside hydrolases (GHs) contains enzymes with EC 3.2.1.- activity that hydrolyze glycosidic bonds (<xref ref-type="bibr" rid="B46">Henrissat and Davies, 1997</xref>; <xref ref-type="bibr" rid="B118">Talamantes et&#xa0;al., 2016</xref>). Under this classification system, endo- and exo-chitinases are placed in GH families 18 and 19, whereas &#x3b2;-N-acetylglucosaminidases are distributed in GH families 3, 20, and 84 (<xref ref-type="bibr" rid="B86">Oyeleye and Normi, 2018</xref>). Fungal chitinases are exclusively found in GH family 18. The only exception is NbChiA (a chitinase isolated from the fungus <italic>Nosema bombycis</italic>), which is the only known fungal chitinase that belongs to GH family 19 (<xref ref-type="bibr" rid="B44">Han et&#xa0;al., 2016</xref>).</p>
<p><italic>M. anisopliae</italic> possesses a complex arsenal of chitin-degrading enzymes; however, only four chitinases have been functionally characterized (<xref ref-type="table" rid="T1"><bold>Table&#xa0;1</bold></xref>). CHIT42 is the first characterized chitinase from <italic>M. anisopliae</italic>. It is an endo-acting chitinase that is composed of 423 amino acid and has a molecular mass of 42 kDa. The enzyme contains a signal peptide for protein secretion (<xref ref-type="bibr" rid="B14">Bogo et&#xa0;al., 1998</xref>; <xref ref-type="bibr" rid="B7">Baratto et&#xa0;al., 2003</xref>). Despite its clear biochemical activity, constitutive expression of the <italic>chit1</italic> gene under the control of the <italic>Aspergillus nidulans gpdA</italic> promoter did not elevate virulence toward <italic>Manduca sexta</italic> caterpillars, suggesting that increased chitinase activity alone is insufficient to enhance pathogenicity (<xref ref-type="bibr" rid="B103">Screen et&#xa0;al., 2001</xref>). CHI2 is another chitinase that was characterized in <italic>M. anisopliae</italic>. The enzyme, which exhibits endochitinase activity, is composed of 419 amino acids and has a molecular mass of 42 kDa (<xref ref-type="bibr" rid="B6">Baratto et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B16">Boldo et&#xa0;al., 2009</xref>). In contrast to CHIT42, CHI2 appears to play a more direct role in virulence. Over-expression of the <italic>chi2</italic> gene in <italic>M. anisopliae</italic> results in a strain with elevated virulence against the cotton stainer bug (<italic>Dysdercus peruvianus</italic>). Deletion of the <italic>chi2</italic> gene in <italic>M. anisopliae</italic> reduced fungal virulence by 20% compared to the wild type strain (<xref ref-type="bibr" rid="B16">Boldo et&#xa0;al., 2009</xref>). These observations are consistent with broader trends in <italic>Metarhizium</italic> and <italic>Beauveria</italic>, where virulence differences often reflect variation in expression and deployment of secreted enzymes rather than their mere presence (<xref ref-type="bibr" rid="B84">Ortiz-Urquiza and Keyhani, 2013</xref>). Interestingly, two proteins are produced from the <italic>chi2</italic> gene via alternative splicing of the <italic>chi2</italic> transcripts (<xref ref-type="bibr" rid="B15">Boldo et&#xa0;al., 2010</xref>). CHIT30 is a 30 kDa chitinase from <italic>M. anisopliae</italic> that is encoded by the <italic>chi3</italic> gene and exhibits dual endo- and exochitinase activities (<xref ref-type="bibr" rid="B91">Pinto et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B25">da Silva et&#xa0;al., 2005</xref>). Deletion of the <italic>chi3</italic> gene reduced fungal virulence against cotton stainer bug <italic>D. peruvianus</italic>, suggesting a major role in cuticle degradation and host penetration. Interestingly, the secretion of CHIT30 is also induced by heat shock at 40&#xb0;C, suggesting another role of CHIT30 in heat-shock adaptation (<xref ref-type="bibr" rid="B113">Staats et&#xa0;al., 2013</xref>). This multifunctional role aligns with observations in other hypocrealean fungi, including <italic>Trichoderma</italic> spp., where secreted chitinases contribute both to host interaction and environmental adaptation (<xref ref-type="bibr" rid="B61">Kubicek et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B80">Mukherjee et&#xa0;al., 2013</xref>). ChiMaD1 is the fourth chitinase to be characterized from <italic>M. anisopliae</italic>. The molecular characterization and virulence impact of ChMaD1 will be discussed below.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>The properties and virulence impacts of the characterized chitinases from <italic>M. anisopliae</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">Enzyme (gene name)</th>
<th valign="middle" align="center">GH18 family subgroup</th>
<th valign="middle" align="center">Molecular weight (kDa)</th>
<th valign="middle" align="center">Domain organization</th>
<th valign="middle" align="center">Activity</th>
<th valign="middle" align="center">Virulence impact</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="left">CHIT42 (<italic>chit1</italic>)</td>
<td valign="middle" align="center">A</td>
<td valign="middle" align="center">42</td>
<td valign="middle" align="center">SP &#x2013; GH18</td>
<td valign="middle" align="center">Endo</td>
<td valign="middle" align="left">&#x2022; Overexpression did not alter virulence against <italic>M. sexta</italic> caterpillars.</td>
</tr>
<tr>
<td valign="middle" align="left">CHI2 (<italic>chi2</italic>)</td>
<td valign="middle" align="center">B</td>
<td valign="middle" align="center">42</td>
<td valign="middle" align="center">SP &#x2013; GH18 &#x2013; CBM1</td>
<td valign="middle" align="center">Endo</td>
<td valign="middle" align="left">&#x2022; Deletion mutant exhibited reduced virulence against cotton stainer bug (<italic>D. peruvianus</italic>)<break/>&#x2022; Over-expression elevated virulence against cotton stainer bug.</td>
</tr>
<tr>
<td valign="middle" align="left">CHI30 (<italic>chi3</italic>)</td>
<td valign="middle" align="center">B</td>
<td valign="middle" align="center">30</td>
<td valign="middle" align="center">SP &#x2013; GH18</td>
<td valign="middle" align="center">Endo &amp; Exo</td>
<td valign="middle" align="left">&#x2022; Deletion mutant exhibited reduced fungal virulence against cotton stainer bug.</td>
</tr>
<tr>
<td valign="middle" align="left">ChiMaD1</td>
<td valign="middle" align="center">D</td>
<td valign="middle" align="center">36.6</td>
<td valign="middle" align="center">SP &#x2013; GH18</td>
<td valign="middle" align="center">Endo</td>
<td valign="middle" align="left">&#x2022; Deletion mutant exhibited higher virulence rates against the cattle tick (<italic>R. microplus</italic>); however, did not alter virulence against the mealworm larvae (<italic>T. molitor</italic>).</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>SP, signal peptide, GH18, GH18 catalytic domain, CBM1, Carbohydrates Binding Module 1, Endo, endo-chitinase, Exo, exo-chitinase.</p></fn>
</table-wrap-foot>
</table-wrap>
<sec id="s3_1">
<label>3.1</label>
<title>GH18 family proteins</title>
<p>The glycoside hydrolase family 18 (GH18) includes fungal chitinases as well as chitinases from other organisms, such as bacteria, animals, and plants (reviewed in detail by <xref ref-type="bibr" rid="B21">Chen et&#xa0;al., 2020</xref>). In general, chitinases of the GH18 family possess a conserved catalytic domain that adopts a (&#x3b2;/&#x3b1;)8 TIM (triosephosphate isomerase) barrel fold. Additionally, the substrate-binding site of GH18 chitinases typically accommodates at least five sugar units, where cleavage occurs between the third and fourth units. Enzymes of the GH18 family are further subgrouped into class III and class V chitinases. These two classes differ in their mode of action and substrate binding groove, which influences substrate specificity and enzymatic function (<xref ref-type="bibr" rid="B104">Seidl, 2008</xref>; <xref ref-type="bibr" rid="B45">Hartl et&#xa0;al., 2012</xref>).</p>
<p>The domain architecture of GH family 18 chitinases comprises a combination of four functional regions: (1) a signal peptide that directs secretion of the protein outside the cell, (2) a GH18 catalytic domain that cleaves &#x3b2;-1,4 glycosidic bonds between GlcNAc units, (3) a carbohydrate (or chitin)-binding module (CBM) that facilitates binding and hydrolysis of insoluble chitin, and (4) a serine (Ser)/threonine (Thr)-rich linker. The biological function of the linker is not fully understood; however, it has been proposed that the Ser/Thr-rich linker enhances the enzymatic activity against insoluble substrates and protects chitinases from proteolytic degradation, particularly by extracellular proteases (<xref ref-type="bibr" rid="B36">Gonz&#xe1;lez et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B49">Huang et&#xa0;al., 2012</xref>). In addition, the Ser/Thr-rich linker may contribute to proper protein folding and has been implicated in glycosylphosphatidylinositol (GPI) anchoring of chitinases to the plasma membrane (<xref ref-type="bibr" rid="B55">Junges et&#xa0;al., 2014</xref>).</p>
<p>Based on the comparative analysis of 18 chitinases from the filamentous fungus <italic>Trichoderma reesei</italic>, fungal GH18 chitinases have been classified into three subgroups designated A, B, and C (<xref ref-type="bibr" rid="B105">Seidl et&#xa0;al., 2005</xref>). This classification system is based on a combination of protein domain architecture, enzymatic mode of action (endo- or exo-acting), and the structural and physiochemical properties of the substrate-binding cleft (<xref ref-type="bibr" rid="B45">Hartl et&#xa0;al., 2012</xref>). Subgroups A and B show homology to class V and class III, respectively, of the GH18 family. In contrast, subgroup C comprises a novel class of high molecular weight chitinases. Interestingly, one chitinase, designated Chi18-15, did not exhibit sequence similarity to any of the three fungal subgroups (<xref ref-type="bibr" rid="B105">Seidl et&#xa0;al., 2005</xref>). Nevertheless, <xref ref-type="bibr" rid="B105">Seidl et&#xa0;al. (2005)</xref> did not assign Chi18&#x2013;15 to a distinct subgroup.</p>
<p><italic>In silico</italic> analysis of the <italic>M. anisopliae</italic> genome revealed the presence of 21 putative chitinases, including the three characterized chitinases (CHIT42, CHI2, and CHI30). Based on sequence homology, these enzymes were categorized into the three fungal subgroups: A, B, and C (<xref ref-type="bibr" rid="B55">Junges et&#xa0;al., 2014</xref>). The distribution of enzymes across the three subgroups was as follows: nine enzymes were grouped in subgroup A and were designated ChiMaA1 to ChiMaA9, seven enzymes were grouped in subgroup B and were designated ChiMaB1 to ChiMaB7, and four enzymes were grouped in subgroup C and were designated ChiMaC1 to ChiMaC4. In addition, <xref ref-type="bibr" rid="B55">Junges et&#xa0;al. (2014)</xref> assigned a chitinase that is homologous to the <italic>T. reesei</italic> Chi18&#x2013;15 to a novel subgroup D and was designated ChiMaD1 (<xref ref-type="table" rid="T2"><bold>Table&#xa0;2</bold></xref>). As anticipated, the analysis of <italic>M. anisopliae</italic> genome did not identify any GH19 chitinases.</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Chitinases and &#x3b2;-N-acetylglucosaminidases identified in <italic>M. anisopliae</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">GH family</th>
<th valign="middle" align="center">GH18 subgroup</th>
<th valign="middle" align="center">Protein</th>
<th valign="middle" align="center">Protein accession number</th>
<th valign="middle" align="center">Published locus tag</th>
<th valign="middle" align="center">Notes</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" rowspan="21" align="left">GH18</td>
<td valign="middle" rowspan="9" align="left">A</td>
<td valign="middle" align="left">ChiMaA1</td>
<td valign="middle" align="left">KFG78916</td>
<td valign="middle" align="left">MANI_007345</td>
<td valign="middle" align="left">Also designated CHIT42 (gene: <italic>chit1</italic>).</td>
</tr>
<tr>
<td valign="middle" align="left">ChiMaA2</td>
<td valign="middle" align="left">KFG82581</td>
<td valign="middle" align="left">MANI_003521</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaA3</td>
<td valign="middle" align="left">KFG85343</td>
<td valign="middle" align="left">MANI_022967</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaA4</td>
<td valign="middle" align="left">KFG87333</td>
<td valign="middle" align="left">MANI_012760</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaA5</td>
<td valign="middle" align="left">KFG82099</td>
<td valign="middle" align="left">MANI_005739</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaA6</td>
<td valign="middle" align="left">KFG82955</td>
<td valign="middle" align="left">MANI_029841</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaA7</td>
<td valign="middle" align="left">KFG84119</td>
<td valign="middle" align="left">MANI_000730</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaA8</td>
<td valign="middle" align="left">KFG79492</td>
<td valign="middle" align="left">MANI_021851</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaA9</td>
<td valign="middle" align="left">KFG81193</td>
<td valign="middle" align="left">MANI_006991</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" rowspan="7" align="left">B</td>
<td valign="middle" align="left">ChiMaB1</td>
<td valign="middle" align="left">KFG78638</td>
<td valign="middle" align="left">MANI_002801</td>
<td valign="middle" align="left">Also designated CHI2 (gene: <italic>chi2</italic>).</td>
</tr>
<tr>
<td valign="middle" align="left">ChiMaB2</td>
<td valign="middle" align="left">KFG84275</td>
<td valign="middle" align="left">MANI_115994 <sup>A</sup></td>
<td valign="middle" align="left">Also designated CHI30 (gene: <italic>chi3</italic>).</td>
</tr>
<tr>
<td valign="middle" align="left">ChiMaB3</td>
<td valign="middle" align="left">KFG78862</td>
<td valign="middle" align="left">MANI_026679</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaB4</td>
<td valign="middle" align="left">KFG77924</td>
<td valign="middle" align="left">MANI_004417</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaB5</td>
<td valign="middle" align="left">KFG77460</td>
<td valign="middle" align="left">MANI_021602</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaB6</td>
<td valign="middle" align="left">KFG77554</td>
<td valign="middle" align="left">MANI_018482</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaB7</td>
<td valign="middle" align="left">KFG80416</td>
<td valign="middle" align="left">MANI_012994</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" rowspan="4" align="left">C</td>
<td valign="middle" align="left">ChiMaC1</td>
<td valign="middle" align="left">KFG83700</td>
<td valign="middle" align="left">MANI_023684</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaC2</td>
<td valign="middle" align="left">KFG80074</td>
<td valign="middle" align="left">MANI_120160 <sup>A</sup></td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaC3</td>
<td valign="middle" align="left">KFG84782</td>
<td valign="middle" align="left">MANI_115484 <sup>A</sup></td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">ChiMaC4</td>
<td valign="middle" align="left">KFG84211</td>
<td valign="middle" align="left">MANI_116045 <sup>A</sup></td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">D</td>
<td valign="middle" align="left">ChiMaD1</td>
<td valign="middle" align="left">KFG86059</td>
<td valign="middle" align="left">MANI_018860</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" rowspan="2" align="left">GH20</td>
<td valign="middle" align="left">N/A <sup>B</sup></td>
<td valign="middle" align="left">MaNAG1</td>
<td valign="middle" align="left">KFG80340</td>
<td valign="middle" align="left">MANI_010908</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">N/A <sup>B</sup></td>
<td valign="middle" align="left">MaNAG2</td>
<td valign="middle" align="left">KFG85702</td>
<td valign="middle" align="left">MANI_029504</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" rowspan="2" align="left">GH3</td>
<td valign="middle" align="left">N/A <sup>B</sup></td>
<td valign="middle" align="left">MaNAG3</td>
<td valign="middle" align="left">KFG78085</td>
<td valign="middle" align="left">MANI_122030</td>
<td valign="middle" align="left"/>
</tr>
<tr>
<td valign="middle" align="left">N/A <sup>B</sup></td>
<td valign="middle" align="left">MaNAG4</td>
<td valign="middle" align="left">Not found</td>
<td valign="middle" align="left">MANI_128875</td>
<td valign="middle" align="left"/>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p><sup>A</sup> Published locus tag was corrected and updated in this table.</p></fn>
<fn>
<p><sup>B</sup> NA, not applicable.</p></fn>
</table-wrap-foot>
</table-wrap>
<sec id="s3_1_1">
<label>3.1.1</label>
<title>Fungal subgroup A chitinases</title>
<p>Fungal subgroup A chitinases constitute the predominant subgroup of fungal GH18 chitinases and are conserved across all fungal genomes. These enzymes typically exhibit a low molecular weight ranging from 40&#x2013;50 kDa. The substrate-binding cleft of subgroup A enzymes is deep and narrow. The majority of subgroup A chitinases are composed of an N-terminal signal peptide followed by a GH18 catalytic domain. Despite this conserved domain architecture, some subgroup A chitinases lack the signal peptide and are therefore predicted to remain intracellularly or to be secreted via unconventional protein secretion pathways (<xref ref-type="bibr" rid="B104">Seidl, 2008</xref>; <xref ref-type="bibr" rid="B28">Ding et&#xa0;al., 2012</xref>). In <italic>M. anisopliae</italic>, seven subgroup A chitinases exhibit an N-terminal signal peptide for secretion outside the cell, whereas the remaining two enzymes (ChiMaA2 and ChiMaA4) lack a signal peptide (<xref ref-type="bibr" rid="B55">Junges et&#xa0;al., 2014</xref>). The well-characterized CHIT42 (ChiMaA1) of <italic>M. anisopliae</italic> belongs to subgroup A and contains both an N-terminal signal peptide and a GH18 catalytic domain consistent with the subgroup A architecture (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>).</p>
</sec>
<sec id="s3_1_2">
<label>3.1.2</label>
<title>Fungal subgroup B chitinases</title>
<p>The majority of subgroup B chitinases are low molecular weight enzymes, typically ranging from 30&#x2013;50 kDa. In contrast to subgroup A, the substrate-binding cleft is shallow and open. The domain architecture of subgroup B chitinases consists of an N-terminal signal peptide, followed by a GH18 catalytic domain. In addition, subgroup B chitinases frequently contain a C-terminal CBM module (<xref ref-type="bibr" rid="B45">Hartl et&#xa0;al., 2012</xref>). Some subgroup B chitinases harbor additional domains such as a Ser/Thr-rich domain and a C-terminal glycosylphosphatidylinositol (GPI)-anchoring motif for attaching the protein to the plasma membrane (<xref ref-type="bibr" rid="B117">Takaya et&#xa0;al., 1998</xref>; <xref ref-type="bibr" rid="B131">Yamazaki et&#xa0;al., 2008</xref>).</p>
<p>In <italic>M. anisopliae</italic>, six subgroup B chitinases exhibit a GH18 catalytic domain and an N-terminal signal peptide. In contrast, ChiMaB5 is the only subgroup B chitinase that lacks the signal peptide. Both ChiMaB1 and ChiMaB4 have an additional C-terminal CBM1 for strong attachment to insoluble chitin. Interestingly, ChiMaB7 displays a domain-rich architecture comprising the signal peptide, GH18 catalytic domain, and a C-terminus Ser/Thr-rich region coupled with a GPI anchoring motif (<xref ref-type="bibr" rid="B55">Junges et&#xa0;al., 2014</xref>). Both CHI2 and CHI30 of <italic>M. anisopliae</italic> belong to subgroup B of GH18 protein. CHI2 comprises an N-terminal signal peptide, a GH18 catalytic domain, and a C-terminal CBM (<xref ref-type="bibr" rid="B16">Boldo et&#xa0;al., 2009</xref>). CHIT30 exhibits a similar domain architecture but lacks the C-terminal CBM module (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>) (<xref ref-type="bibr" rid="B55">Junges et&#xa0;al., 2014</xref>).</p>
</sec>
<sec id="s3_1_3">
<label>3.1.3</label>
<title>Fungal subgroup C chitinases</title>
<p>Fungal subgroup C chitinases share several structural and functional features with subgroup A enzymes. For example, subgroup A and C enzymes are both exo-acting enzymes that belong to class V chitinases and have a deep and narrow substrate-binding groove. Nevertheless, subgroup C chitinases have several features that distinguish them from subgroups A and B. First, subgroup C enzymes are high molecular weight proteins (140&#x2013;170 kDa). In addition, the domain organization of subgroup C chitinases contains a CBM 18 domain and a CBM 50 domain (also known as LysMs) for binding insoluble chitin. Both CBM 18 and CBM 50 are located at the N-terminal region of subgroup C (<xref ref-type="bibr" rid="B104">Seidl, 2008</xref>; <xref ref-type="bibr" rid="B95">Rajput et&#xa0;al., 2022</xref>).</p>
<p><italic>M. anisopliae</italic> chitinases from the subgroup C exhibit multiple CBM modules in addition to a GH18 catalytic domain and an N-terminal signal peptide. For example, the amino acid sequence of ChiMaC1 and ChiMaC2 harbor two CBMs, i.e. CBM18 and CBM50, whereas ChiMaC3 has three CBMs, i.e. CBM18, CBM24, and CBM50. The only exception to this is ChiMaC4, which displays only one CBM, i.e. CBM18 (<xref ref-type="bibr" rid="B55">Junges et&#xa0;al., 2014</xref>). Interestingly, ChiMaC2 lacks the signal peptide region (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>), suggesting that this enzyme is a cytoplasmic enzyme, which functions in fungal cell wall remodeling. It is also possible that ChiMaC2 is secreted via unconventional protein secretion pathways (<xref ref-type="bibr" rid="B28">Ding et&#xa0;al., 2012</xref>).</p>
</sec>
<sec id="s3_1_4">
<label>3.1.4</label>
<title>Fungal subgroup D chitinases</title>
<p>ChiMaD1 chitinase is a homolog of <italic>T. reesei</italic> chi18-15. ChiMaD1 orthologs exhibit endochitinase activity and contain a GH18 catalytic domain that is similar to the chitinase J (ChiJ) from <italic>Streptomyces</italic> species (<xref ref-type="bibr" rid="B125">Viterbo et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B105">Seidl et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B121">Ubhayasekera and Karlsson, 2012</xref>). The protein domain architecture is composed of an N-terminal signal peptide and a GH18 catalytic domain of bacterial origin (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>) (<xref ref-type="bibr" rid="B55">Junges et&#xa0;al., 2014</xref>).</p>
<p>Deletion of ChMaD1-encoding gene in <italic>M. anisopliae</italic> did not affect the susceptibility of the cell wall to stresses or reduce secreted chitinases. The chMaD1-deletion mutant exhibits higher virulence rates against the cattle tick (<italic>Rhipicephalus microplus</italic>), but, surprisingly, displayed virulence rates similar to the wild type strain in the mealworm larvae (<italic>Tenebrio molitor</italic>) (<xref ref-type="bibr" rid="B100">Sbaraini et&#xa0;al., 2021</xref>). This suggests that cuticle variability across different species can induce the expression of different sets of chitinase genes.</p>
</sec>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>GH20 and GH3 &#x3b2;-N-acetylglucosaminidases</title>
<p>&#x3b2;-N-acetylglucosaminidases (&#x3b2;-N-acetylhexosaminidases, NAGases, EC 3.2.1.52) are enzymes that catalyze the breakdown of chitobioses to GlcNAc monomers (<xref ref-type="bibr" rid="B50">Intra et&#xa0;al., 2008</xref>). NAGases are grouped into three GH families: GH3, GH20, and GH84. Fungal NAGases are commonly found in the GH20 family (<xref ref-type="bibr" rid="B83">Oliveira et&#xa0;al., 2018</xref>). Although the majority of GH3 NAGases are found in prokaryotes, a fungal GH3 NAGase was isolated and characterized from <italic>Rhizomucor miehei</italic> (<xref ref-type="bibr" rid="B132">Yang et&#xa0;al., 2014</xref>). Additionally, the genome of <italic>M. anisopliae</italic> harbors two NAGases from GH3 family. Therefore, only GH3 and GH20 NAGases will be covered in this section.</p>
<p>The characteristic domain architecture for GH20 proteins comprises a catalytic GH20 domain with an &#x3b1;/&#x3b2; TIM-barrel preceded by an N-terminal non-catalytic GH20b domain, which is required for protein expression and stabilization (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>) (<xref ref-type="bibr" rid="B70">Liu et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B123">Val-Cid et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B68">Li et&#xa0;al., 2022b</xref>).</p>
<p>GH3 family enzymes exhibit a broad range of enzyme activities, such as &#x3b2;-D-glucosidases, &#x3b1;-L-arabinofuranosidases, &#x3b2;-D-xylopyranosidases, and N-acetyl-&#x3b2;-D-glucosaminidases (NAGases) (<xref ref-type="bibr" rid="B74">Macdonald et&#xa0;al., 2015</xref>). GH3 NAGases are considered single-domain enzymes because chitobiose hydrolysis is carried out exclusively by the N-terminal domain, which harbors the general acid/base catalytic residue and the catalytic nucleophile residue (<xref ref-type="bibr" rid="B5">Bacik et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B74">Macdonald et&#xa0;al., 2015</xref>). The presence of the general acid/base catalytic residue and the catalytic nucleophile residue in the GH3 catalytic domain is a distinctive feature for the identification of GH3 NAGases. In <italic>T. reesei</italic>, a protein, designated NAG3, with a GH3 NAGase domain was identified and thought to be the first <italic>T. reesei</italic> GH3 NAGase (<xref ref-type="bibr" rid="B56">Kappel et&#xa0;al., 2016</xref>). However, this protein lacks the catalytic residues responsible for the cleavage of amino sugar substrates, suggesting that it might function as a GlcNAc signal sensor/transducer. The protein was re-designated NGS1 (<xref ref-type="bibr" rid="B122">Ullah et&#xa0;al., 2025</xref>).</p>
<p>In an early study, a 110 kDa enzyme with NAGase activity was purified from <italic>M. anisopliae</italic>. The enzyme hydrolyzes GlcNAc dimers, trimers, and tetramers to GlcNAc monomers. The enzyme was feedback inhibited by the accumulation of GlcNAc (<xref ref-type="bibr" rid="B114">St. Leger et&#xa0;al., 1991</xref>). Nevertheless, the gene encoding for this enzyme was not identified.</p>
<p>Genome-wide screening revealed the presence of four NAGase enzymes in the genome of <italic>M. anisopliae</italic>. Two enzymes, MaNAG1 and MaNAG2, belong to GH20 NAGases and the other two, MaNAG3 and MaNAG4, belong to GH3 NAGases (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>) (<xref ref-type="bibr" rid="B83">Oliveira et&#xa0;al., 2018</xref>). The molecular masses of MaNAG1 and MaNAG2 are ~67 kDa and ~61.5 kDa, respectively. The putative GH20 NAGases exhibit the characteristic GH20 domain architecture and an N-terminal signal peptide for secretion. MaNAG3 and MaNAG4 have a predicted molecular mass of ~99 and ~60.5 kDa, respectively. Bioinformatic analysis of MaNAG3 and MaNAG4 reveals the presence of the typical GH3 catalytic domain that contains the catalytic residues (<xref ref-type="bibr" rid="B83">Oliveira et&#xa0;al., 2018</xref>). The domain composition of MaNAG1&#x2013;4 is summarized in <xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref> of this review. The expression profiles were described by others (<xref ref-type="bibr" rid="B83">Oliveira et&#xa0;al., 2018</xref>).</p>
<p>In contrast to chitinases, which are present in high redundancy within fungal genomes, NAGases are encoded by one or a few genes. Nevertheless, NAGases play important roles during <italic>M. anisopliae</italic> cell wall extension, branching, and degradation (<xref ref-type="bibr" rid="B83">Oliveira et&#xa0;al., 2018</xref>). In addition, NAGases play an important role in metabolizing chitin as the sole carbon source. The deletion of NAGase-encoding genes, <italic>nag1</italic> and <italic>nag2</italic>, in the mycoparasitic fungus <italic>Trichoderma atroviride</italic> abolished its ability to grow on chitin as the sole carbon source, highlighting the significance of NAGases in metabolizing chitin. Nevertheless, the deletion of NAGase-encoding genes did not impact fungal virulence, suggesting a minor role for chitin as a carbon source during parasitism (<xref ref-type="bibr" rid="B71">L&#xf3;pez-Mond&#xe9;jar et&#xa0;al., 2009</xref>).</p>
</sec>
</sec>
<sec id="s4">
<label>4</label>
<title>The biological functions of chitinases during pathogenesis and saprophytic growth</title>
<p>Entomopathogenic fungi have a complex life cycle that involves a parasitic stage on different arthropods, and a saprophytic stage in the soil or on infected cadavers (<xref ref-type="bibr" rid="B38">Gortari and Hours, 2008</xref>; <xref ref-type="bibr" rid="B21">Chen et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B116">St. Leger and Wang, 2020</xref>). Chitinases are produced during all stages of the fungal life cycle. Besides degrading exogenous chitin, chitinases are also key enzymes in fungal cell wall remodeling (<xref ref-type="bibr" rid="B39">Gruber et&#xa0;al., 2011</xref>). The number of these enzymes varies with the trophic relationship. For example, the genomes of the mycoparasitic fungi <italic>T. atroviride</italic> and <italic>T. virens</italic> harbor a greater number of chitinase-encoding genes than those of entomopathogenic and saprophytic fungi (<xref ref-type="table" rid="T3"><bold>Table&#xa0;3</bold></xref>). In contrast, the number of these genes in the entomopathogenic fungi is approximately equal to or lower than that in the saprophytic fungus <italic>T. reesei</italic>. Interestingly, the entomopathogenic fungus <italic>B. bassiana</italic> has more NAGase-encoding genes (5 genes) than other fungi (<xref ref-type="table" rid="T3"><bold>Table&#xa0;3</bold></xref>).</p>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>The distribution of chitin-hydrolyzing enzymes in entomopathogenic, mycoparasitic, and saprophytic fungi.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" rowspan="2" align="center">Enzyme</th>
<th valign="middle" colspan="5" align="center">Entomopathogenic</th>
<th valign="middle" colspan="2" align="center">Mycoparasitic</th>
<th valign="middle" align="center">Saprophytic</th>
</tr>
<tr>
<th valign="middle" align="center"><italic>M. anisopliae <sup>A</sup></italic></th>
<th valign="middle" align="center"><italic>M. robertsii <sup>B</sup></italic></th>
<th valign="middle" align="center"><italic>M. acridum <sup>B</sup></italic></th>
<th valign="middle" align="center"><italic>B. bassiana <sup>B</sup></italic></th>
<th valign="middle" align="center"><italic>I. cicadae <sup>C</sup></italic></th>
<th valign="middle" align="center"><italic>T. atroviride <sup>D</sup></italic></th>
<th valign="middle" align="center"><italic>T. virens <sup>D</sup></italic></th>
<th valign="middle" align="center"><italic>T. reesei <sup>D</sup></italic></th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="center">Chi-sg A</td>
<td valign="middle" align="center">9</td>
<td valign="middle" align="center">8</td>
<td valign="middle" align="center">7</td>
<td valign="middle" align="center">8</td>
<td valign="middle" align="center">7</td>
<td valign="middle" align="center">7</td>
<td valign="middle" align="center">8</td>
<td valign="middle" align="center">7</td>
</tr>
<tr>
<td valign="middle" align="center">Chi-sg B</td>
<td valign="middle" align="center">7</td>
<td valign="middle" align="center">7</td>
<td valign="middle" align="center">5</td>
<td valign="middle" align="center">4</td>
<td valign="middle" align="center">7</td>
<td valign="middle" align="center">11</td>
<td valign="middle" align="center">11</td>
<td valign="middle" align="center">7</td>
</tr>
<tr>
<td valign="middle" align="center">Chi-sg C</td>
<td valign="middle" align="center">4</td>
<td valign="middle" align="center">6</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">8</td>
<td valign="middle" align="center">3</td>
<td valign="middle" align="center">9</td>
<td valign="middle" align="center">15</td>
<td valign="middle" align="center">4</td>
</tr>
<tr>
<td valign="middle" align="center">Chi-sg D</td>
<td valign="middle" align="center">1</td>
<td valign="middle" align="center">ND<italic><sup>E</sup></italic></td>
<td valign="middle" align="center">ND<italic><sup>E</sup></italic></td>
<td valign="middle" align="center">ND<italic><sup>E</sup></italic></td>
<td valign="middle" align="center">ND<italic><sup>E</sup></italic></td>
<td valign="middle" align="center">1</td>
<td valign="middle" align="center">1</td>
<td valign="middle" align="center">1</td>
</tr>
<tr>
<td valign="middle" align="center">Total Chitinases</td>
<td valign="middle" align="center">21</td>
<td valign="middle" align="center">21</td>
<td valign="middle" align="center">14</td>
<td valign="middle" align="center">20</td>
<td valign="middle" align="center">17</td>
<td valign="middle" align="center">28</td>
<td valign="middle" align="center">35</td>
<td valign="middle" align="center">19</td>
</tr>
<tr>
<td valign="middle" align="center">GH20 NAGase</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">5</td>
<td valign="middle" align="center">1</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">2</td>
</tr>
<tr>
<td valign="middle" align="center">GH3 NAGase</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">ND<italic><sup>F</sup></italic></td>
<td valign="middle" align="center">ND<italic><sup>F</sup></italic></td>
<td valign="middle" align="center">ND<italic><sup>F</sup></italic></td>
<td valign="middle" align="center">ND<italic><sup>F</sup></italic></td>
<td valign="middle" align="center">ND<italic><sup>F</sup></italic></td>
<td valign="middle" align="center">ND<italic><sup>F</sup></italic></td>
<td valign="middle" align="center">ND<italic><sup>F</sup></italic></td>
</tr>
<tr>
<td valign="middle" align="center">Total</td>
<td valign="middle" align="center">25</td>
<td valign="middle" align="center">23</td>
<td valign="middle" align="center">16</td>
<td valign="middle" align="center">25</td>
<td valign="middle" align="center">18</td>
<td valign="middle" align="center">29</td>
<td valign="middle" align="center">36</td>
<td valign="middle" align="center">21</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Data were compiled from <sup>A</sup> (<xref ref-type="bibr" rid="B55">Junges et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B83">Oliveira et&#xa0;al., 2018</xref>); <sup>B</sup> (<xref ref-type="bibr" rid="B130">Xiao et&#xa0;al., 2012</xref>), <sup>C</sup> (<xref ref-type="bibr" rid="B89">Peng et&#xa0;al., 2020</xref>), and <sup>D</sup> (<xref ref-type="bibr" rid="B106">Seidl-Seiboth et&#xa0;al., 2014</xref>).</p></fn>
<fn>
<p>Chi-sg: Chitinase subgroup.</p></fn>
<fn>
<p>ND: Not Determined.</p></fn>
<fn>
<p><sup>E</sup> Chitinases that belong to the subgroup D were not identified in the original manuscripts. However, when we ran BLAST analysis using ChiMaD1 chitinase (Accession Number KFG86059) as query sequence, we identified orthologs in <italic>M. robertsii</italic> (Accession Number XP_007824504.1, similarity 96%), <italic>M. acridum</italic> (Accession Number XP_007808545.1, similarity 89.6%), <italic>B. bassiana</italic> (Accession Number XP_008599636.1, similarity 80%), and <italic>I. cicadae</italic> (Accession Number QDJ94322.1, similarity 78%).</p></fn>
<fn>
<p><sup>F</sup> NAGases that belong to the GH3 family were not identified in the original manuscripts. However, BLAST analysis using MaNAG3 (Accession Number KFG78085) as query sequence identified orthologs in <italic>M. robertsii</italic> (Accession Number XP_007818395.2, similarity 99.5%), <italic>M. acridum</italic> (Accession Number XP_065978122.1, similarity 95%), <italic>B. bassiana</italic> (Accession Number XP_008598947.1, similarity 77.5%), <italic>T. atroviride</italic> (Accession Number WOD46308.1, similarity 77.5%), <italic>T. virens</italic> (Accession Number XP_013958055.1, similarity 78%), and <italic>T. reesei</italic> (Accession Number XP_006966911.1, similarity 78%). Interestingly, MaNAG3 did not exhibit significant similarity to any protein encoded by the <italic>I. cicadae</italic> genome.</p></fn>
</table-wrap-foot>
</table-wrap>
<p>Chitinases exhibit distinct biological roles during the different stages of the fungal life cycle. Entomopathogenic fungi secrete an arsenal of chitinases that hydrolyzes the cuticle, facilitating host penetration and colonization. Inside the hemocoel, they metabolize host nutrients while exhibiting limited dependence on less&#x2212;preferred carbon sources, including chitin (<xref ref-type="bibr" rid="B39">Gruber et&#xa0;al., 2011</xref>). Once the host nutrients are depleted, the entomopathogenic fungi switch to the saprophytic stage, growing on the cadavers of insects. During this stage, they have a higher capacity to metabolize the less-preferred carbon sources. This suggests a distinction between chitinase-mediated virulence and chitin metabolism. This is supported by the fact that the large arsenal of chitin-degrading enzymes in mycoparasitic fungi (<xref ref-type="table" rid="T3"><bold>Table&#xa0;3</bold></xref>) did not account for a good metabolism of chitin or its partially acetylated form, chitosan. In contrast, the entomopathogenic fungus <italic>B. bassiana</italic> exhibited a better growth on chitin despite having a fewer chitinase genes (<xref ref-type="bibr" rid="B87">Palma-Guerrero et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B39">Gruber et&#xa0;al., 2011</xref>). Furthermore, the deletion of NAGase-encoding genes in <italic>T. atroviride</italic> results in strains with abolished growth on chitin as the sole carbon source; nevertheless, the mutants retained full virulence (<xref ref-type="bibr" rid="B71">L&#xf3;pez-Mond&#xe9;jar et&#xa0;al., 2009</xref>). Because of the overlapping functions of chitinases, it is challenging to precisely delineate their relative contributions to each lifestyle (<xref ref-type="bibr" rid="B85">Ortiz-Urquiza and Keyhani, 2016</xref>).</p>
<p>Differences have also been noted between parasitic and saprophytic fungi with respect to the GH domain architecture. The genomes of the mycoparasitic fungi harbor a larger set of CBMs than those of the saprophytic fungi. These modules facilitate stronger attachment of GH proteins to insoluble substrates (<xref ref-type="bibr" rid="B61">Kubicek et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B130">Xiao et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B116">St. Leger and Wang, 2020</xref>). In <italic>M. anisopliae</italic>, the GH18 subgroup C chitinases have CBM-rich domain architecture (<xref ref-type="fig" rid="f2"><bold>Figure&#xa0;2</bold></xref>), suggesting a major role for these proteins during pathogenicity.</p>
<p>The chitinolytic enzymes of the entomopathogenic fungi <italic>M. anisopliae</italic> and <italic>Isaria cicadae</italic>, and the mycoparasitic fungi belonging to <italic>Trichoderma</italic> spp. exhibit a conserved domain architecture in subgroups A and B of GH18 chitinases (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). Subgroup A enzymes contain a GH18 catalytic domain and frequently have a signal peptide at the N-terminus; however, these enzymes lack CBM modules. Subgroups B share a homologous domain organization that comprises a signal peptide followed by a GH18 module. Some subgroup B chitinases might also have a CBM1 module at the C-terminus (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). Interestingly, only a third of the subgroup B chitinases from <italic>I. cicadae</italic> have a signal peptide (<xref ref-type="bibr" rid="B89">Peng et&#xa0;al., 2020</xref>). In <italic>Trichoderma</italic> spp., subgroup D chitinase lacks signal peptide at the N-terminus. <xref ref-type="bibr" rid="B89">Peng et&#xa0;al. (2020)</xref> did not report a subgroup D chitinase in <italic>I. cicadae</italic>. However, we identified a homolog of subgroup D chitinase when we ran a BLAST analysis (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>). Subgroup C chitinases display a divergent domain organization across all three fungi (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). Although they play a key role in the degradation of the exogenous chitin, surprisingly, the subgroup C chitinases from <italic>I. cicadae</italic> lack the signal peptide. The domain architecture of GH20 NAGases is conserved except for the <italic>I. cicadae</italic> homolog, which lacks the signal peptide (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). The lack of the signal peptide in several chitinolytic enzymes from <italic>I. cicadae</italic> suggests different biological roles or that the proteins are secreted via unconventional pathways (<xref ref-type="bibr" rid="B28">Ding et&#xa0;al., 2012</xref>). Interestingly, homologs of GH3 NAGases from <italic>M. anisopliae</italic> have not been identified in <italic>Trichoderma</italic> spp. or <italic>I. cicadae</italic>. However, our BLAST analysis identified GH3 NAGase proteins in these fungi (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>). For reviews on the contributions of chitinase diversity to fungal virulence, we recommend the reader to refer to <xref ref-type="bibr" rid="B45">Hartl et&#xa0;al. (2012)</xref>, <xref ref-type="bibr" rid="B40">Gruber and Seidl-Seiboth (2012)</xref>, and <xref ref-type="bibr" rid="B32">Ferreira and Soares (2023)</xref>.</p>
</sec>
<sec id="s5">
<label>5</label>
<title>Regulation of gene expression of chitin-degrading enzymes in <italic>M. anisopliae</italic></title>
<p>Chitinase expression has been shown to correlate with virulence in entomopathogenic fungi. Highly virulent <italic>M. anisoplia</italic>e strains produced significant amounts of chitinases in comparison with low-virulence strains (<xref ref-type="bibr" rid="B10">Bhanu Prakash et&#xa0;al., 2012</xref>). The expression of <italic>M. anisoplia</italic>e chitinases is induced by different substrates such as insect cuticle, chitin, and GlcNAc (<xref ref-type="bibr" rid="B14">Bogo et&#xa0;al., 1998</xref>; <xref ref-type="bibr" rid="B60">Krieger de Moraes et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B8">Barreto et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B98">Santi et&#xa0;al., 2010b</xref>; <xref ref-type="bibr" rid="B9">Beys-da-Silva et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B96">Rustiguel et&#xa0;al., 2016</xref>). Unmasking chitin is a prerequisite for the induction of chitinase expression. Chitinase activities of entomopathogenic fungi, including <italic>M. anisopliae</italic>, are detected at low levels on the cuticle surface during the initial penetration step. However, chitinase levels increase once chitin becomes accessible following the removal of masking proteins through proteolytic hydrolysis (<xref ref-type="bibr" rid="B115">St. Leger et&#xa0;al., 1996</xref>). Because of the dual nature of <italic>M. anisoplia</italic>e as an insect pathogen and a soil saprophyte, chitinases are secreted in response to cuticles derived from living as well as dead insects. For example, the expression of chitinase genes was induced during cuticle penetration of the living <italic>Helicoverpa armigera</italic> insects, as well as during saprophytic growth on the cuticle of dead <italic>Spodoptera litura</italic> (<xref ref-type="bibr" rid="B10">Bhanu Prakash et&#xa0;al., 2012</xref>). In contrast, chitinase and NAGase activities are repressed in the presence of elevated concentrations of GlcNAc, suggesting a feedback inhibition mechanism regulating the expression of these genes (<xref ref-type="bibr" rid="B114">St. Leger et&#xa0;al., 1991</xref>; <xref ref-type="bibr" rid="B60">Krieger de Moraes et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B8">Barreto et&#xa0;al., 2004</xref>).</p>
<p>The spatiotemporal expression pattern of chitinases in <italic>M. anisoplia</italic>e varies with the substrate. Gene expression analyses deciphered the spatiotemporal expression pattern of putative GH18 chitinases, and GH3 and GH20 NAGases in <italic>M. anisopliae</italic>. Autolysis of mycelia induced the highest number of chitinases. Additionally, chitin and GlcNAc induced the highest expression levels of subgroups A and B chitinases in mycelia. In contrast, subgroup C chitinases displayed significantly lower expression levels than subgroups A and B under the same induction conditions. Fungal conidia, appressoria, and blastospores displayed lower expression levels than mycelia (<xref ref-type="bibr" rid="B55">Junges et&#xa0;al., 2014</xref>). Variability in gene expression levels was also noted in GH3 and GH20 NAGases. In mycelia, chitin induced various expression levels of NAGase-encoding genes. MaNAG1 and MaNAG4 showed the highest expression levels, reaching ~50-fold and ~13-fold, respectively. Interestingly, the expression of MaNAG2 and MaNAG4 genes was constantly detected in the appressoria in the absence of chitin or cuticle, and in mycelia after challenging with chitin, suggesting a major role in host cuticle penetration. MaNAG3 seems to have a dual role in fungal pathobiology and cell wall remodeling during hyphal growth. This can be attributed to the fact that the MaNAG3-encoding gene was constitutively expressed in conidia and appressoria; however, was induced in mycelia after challenging with chitin and GlcNAc (<xref ref-type="bibr" rid="B83">Oliveira et&#xa0;al., 2018</xref>). The spatiotemporal regulation of chitinases in other fungi has been reviewed by <xref ref-type="bibr" rid="B64">Langner and G&#xf6;hre (2016)</xref>.</p>
<p>The expression of chitinases is also triggered by inducers other than GlcNAc-containing substrates. For example, the expression of <italic>M. anisoplia</italic>e <italic>chi3</italic> (ChiMaB2) gene is regulated in response to heat-shock stress conditions (at 42&#xb0;C for 1 h). It is therefore presumed that the <italic>chi3</italic> gene is a component of the fungal adaptation mechanism to heat-shock stress conditions (<xref ref-type="bibr" rid="B113">Staats et&#xa0;al., 2013</xref>).</p>
<p>Interestingly, infection with mycoviruses is another factor that affects chitinase activity. Mycoviruses are viruses that infect fungi, reducing their growth and virulence. Virus-infected <italic>Metarhizium majus</italic> and <italic>B. bassiana</italic> strains displayed an attenuated virulence and cuticular penetration (<xref ref-type="bibr" rid="B128">Wang et&#xa0;al., 2023</xref>; <xref ref-type="bibr" rid="B133">Zhang et&#xa0;al., 2023</xref>). Similarly, viral infection of <italic>M. anisopliae</italic> resulted in a significant reduction in endochitinase levels but not in N-acetylglucosaminidase levels (<xref ref-type="bibr" rid="B26">de la Paz Gim&#xe9;nez-Pecci et&#xa0;al., 2002</xref>). However, such infection outcomes were found to be inconsistent across different studies. For example, <xref ref-type="bibr" rid="B90">Perinotto et&#xa0;al. (2014)</xref> showed that the virus-infected <italic>M. anisopliae</italic> strains exhibited higher virulence levels against <italic>Rhipicephalus microplus</italic> ticks and produced a significant amount of chitinases and proteases. These findings were supported by another study, which found that <italic>M. anisopliae</italic> and <italic>M. pingshaense</italic> mycovirus-infected strains exhibited elevated levels of virulence against the lepidopteran larvae of diamondback moth (<italic>Plutella xylostella</italic>) and the fall armyworm (<italic>Spodoptera frugiperda</italic>) (<xref ref-type="bibr" rid="B41">Guo et&#xa0;al., 2024</xref>). For more information on mycoviruses in entomopathogenic fungi, we recommend the reader to refer to recent reviews (<xref ref-type="bibr" rid="B47">Hough et&#xa0;al., 2023</xref>; <xref ref-type="bibr" rid="B19">Camargo et&#xa0;al., 2025</xref>).</p>
<p><italic>M. anisopliae</italic> reacts to environmental changes via several sensory systems and a network of transcription factors. Screening of <italic>M. anisopliae</italic> genome identified 161 protein kinases and 510 putative transcription factors (<xref ref-type="bibr" rid="B33">Gao et&#xa0;al., 2011</xref>). However, the role of these proteins was not investigated in <italic>M. anisopliae</italic>. In this section, we will integrate key findings from other entomopathogenic fungi to identify conserved molecular mechanisms regulating gene expression of chitinases and NAGases in <italic>M. anisopliae</italic> (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4</bold></xref>).</p>
<p>The two-component system (TCS) is a key sensory system in fungi. The TCS system is a signal transduction pathway that consists of a membrane-bound sensor histidine kinase (Sln1) and two response regulator proteins, designated Ssk1 and Skn7 (<xref ref-type="bibr" rid="B101">Schaller et&#xa0;al., 2011</xref>). The histidine kinase (Sln1) is a hybrid protein that contains two domains: the kinase domain and the receiver domain. Sln1 senses environmental changes, and stimulates autophosphorylation of the kinase domain, which passes the phosphate group to the receiver domain of Sln1. Orthologs of Sln1 are involved in adaptation to different stress conditions (<xref ref-type="bibr" rid="B20">Catlett et&#xa0;al., 2003</xref>). In the entomopathogenic fungus <italic>Metarhizium rileyi</italic>, Sln1 is a key sensor of growth stress (<xref ref-type="bibr" rid="B111">Song et&#xa0;al., 2013</xref>, <xref ref-type="bibr" rid="B109">Song et&#xa0;al., 2015</xref>). Ypd1 is the next protein in the TCS. Ypd1 receives the phosphate group from Sln1 and transfers it to the downstream response regulators Ssk1 and Skn7. The later protein, Skn7, is a transcription factor that upregulates the expression of stress response genes and cell wall integrity in fungi (<xref ref-type="bibr" rid="B31">Fassler and West, 2011</xref>). The role of Skn7 in entomopathogenicity was analyzed in <italic>Metarhizium robertsii</italic>. Deletion of the <italic>skn7</italic> gene in <italic>M. robertsii</italic> induced cell autolysis and the activation of extracellular chitinases and proteases, which implies that Skn7 functions as a repressor of chitinase and protease gene expression. In addition, bioinformatic analysis revealed the presence of the Skn7 binding site 5&#x2032;-GGC(C/G)(A/G)-3&#x2032; in the promoter region of two chitinases (<xref ref-type="bibr" rid="B107">Shang et&#xa0;al., 2015</xref>). The homologs of TCS proteins and the two chitinases are conserved in the genome of <italic>M. anisopliae</italic> (<xref ref-type="table" rid="T4"><bold>Tables&#xa0;4</bold></xref> and <xref ref-type="table" rid="T5"><bold>5</bold></xref>). This suggests similar sensory and regulatory mechanisms in both fungi (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4</bold></xref>).</p>
<table-wrap id="T4" position="float">
<label>Table&#xa0;4</label>
<caption>
<p>The conservation of the regulatory mechanisms that control the expression of chitinases and NAGases in <italic>M. anisopliae</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">Regulator/Transporter</th>
<th valign="middle" align="center">Fungus</th>
<th valign="middle" align="center">Protein accession number</th>
<th valign="middle" align="center">Accession number of <italic>M. anisopliae</italic> homolog</th>
<th valign="middle" align="center">Similarity (%)</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="left">Sln1</td>
<td valign="middle" align="left"><italic>M. rileyi</italic></td>
<td valign="middle" align="center">AJF23735</td>
<td valign="middle" align="center">KFG80059</td>
<td valign="middle" align="center">71.1</td>
</tr>
<tr>
<td valign="middle" align="left">Ypd1</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007821550</td>
<td valign="middle" align="center">KFG78655</td>
<td valign="middle" align="center">98.7</td>
</tr>
<tr>
<td valign="middle" align="left">Skn7</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007820838</td>
<td valign="middle" align="center">KFG82322</td>
<td valign="middle" align="center">95.8</td>
</tr>
<tr>
<td valign="middle" align="left">PacC</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007822227</td>
<td valign="middle" align="center">KFG86225</td>
<td valign="middle" align="center">99.7</td>
</tr>
<tr>
<td valign="middle" align="left">Ron1 (syn. PhoG or Vib1)</td>
<td valign="middle" align="left"><italic>B. bassiana</italic></td>
<td valign="middle" align="center">XP_008598949</td>
<td valign="middle" align="center">KFG78087</td>
<td valign="middle" align="center">44.0</td>
</tr>
<tr>
<td valign="middle" align="left">Sre1</td>
<td valign="middle" align="left"><italic>C. rosea</italic></td>
<td valign="middle" align="center">CAG9943772</td>
<td valign="middle" align="center">*KFG78094 <sup>A</sup></td>
<td valign="middle" align="center">44.6</td>
</tr>
<tr>
<td valign="middle" align="left">NGT1</td>
<td valign="middle" align="left"><italic>T. reesei</italic></td>
<td valign="middle" align="center">XP_006968202</td>
<td valign="middle" align="center">KFG79873</td>
<td valign="middle" align="center">42.0</td>
</tr>
<tr>
<td valign="middle" align="left">CreA</td>
<td valign="middle" align="left"><italic>M. acridum</italic></td>
<td valign="middle" align="center">QCQ29101</td>
<td valign="middle" align="center">CAA71314 <sup>B</sup></td>
<td valign="middle" align="center">87.8</td>
</tr>
<tr>
<td valign="middle" align="left">Fus3 MAPK</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007820790</td>
<td valign="middle" align="center">KFG82374</td>
<td valign="middle" align="center">100</td>
</tr>
<tr>
<td valign="middle" align="left">Hog1 MAPK</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007821315</td>
<td valign="middle" align="center">KFG87113</td>
<td valign="middle" align="center">100</td>
</tr>
<tr>
<td valign="middle" align="left">Slt2 MAPK</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007819370</td>
<td valign="middle" align="center">KFG81381</td>
<td valign="middle" align="center">99.5</td>
</tr>
<tr>
<td valign="middle" align="left">Ime2 MAPK</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007821592</td>
<td valign="middle" align="center">KFG84966</td>
<td valign="middle" align="center">99.2</td>
</tr>
<tr>
<td valign="middle" align="left">Ste7 MAPK</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007820610</td>
<td valign="middle" align="center">KFG80275</td>
<td valign="middle" align="center">100</td>
</tr>
<tr>
<td valign="middle" align="left">Pbs2 MAPK</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007817045</td>
<td valign="middle" align="center">KFG86447</td>
<td valign="middle" align="center">97.5</td>
</tr>
<tr>
<td valign="middle" align="left">Mkk MAPK</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007822102</td>
<td valign="middle" align="center">KFG77613</td>
<td valign="middle" align="center">98.9</td>
</tr>
<tr>
<td valign="middle" align="left">Ste11 MAPK</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007819718</td>
<td valign="middle" align="center">KFG80809</td>
<td valign="middle" align="center">99.6</td>
</tr>
<tr>
<td valign="middle" align="left">Bck1 MAPK</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007820870</td>
<td valign="middle" align="center">KFG82289</td>
<td valign="middle" align="center">99.4</td>
</tr>
<tr>
<td valign="middle" align="left">Ssk2 MAPK</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007820479</td>
<td valign="middle" align="center">KFG87534</td>
<td valign="middle" align="center">98.9</td>
</tr>
<tr>
<td valign="middle" align="left">RNS1</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007823070</td>
<td valign="middle" align="center">KFG85359</td>
<td valign="middle" align="center">97.6</td>
</tr>
<tr>
<td valign="middle" align="left">Ste12</td>
<td valign="middle" align="left"><italic>M. rileyi</italic></td>
<td valign="middle" align="center">TWU73687</td>
<td valign="middle" align="center">KFG86114</td>
<td valign="middle" align="center">85.9</td>
</tr>
<tr>
<td valign="middle" align="left">COH1</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007825009</td>
<td valign="middle" align="center">KFG84043</td>
<td valign="middle" align="center">97.7</td>
</tr>
<tr>
<td valign="middle" align="left">COH2</td>
<td valign="middle" align="left"><italic>M. robertsii</italic></td>
<td valign="middle" align="center">XP_007824027</td>
<td valign="middle" align="center">KFG84480</td>
<td valign="middle" align="center">92.0</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p><sup>A</sup> This enzyme is annotated as dihydrodipicolinate synthase; however, it exhibits sequence similarity to HMS1 transcription factor in <italic>Saccharomyces cerevisiae</italic>. Both Sre1 and HMS1 have the same Conserved Domains Database (CDD) number: cd11399.</p></fn>
<fn>
<p><sup>B</sup> BLAST analysis did not reveal any CreA homologs in E6 strain. Nevertheless, CreA homologs were found in other <italic>M. anisopliae</italic> strains, which suggests that the genome of E6 strain still requires improvement in gene annotation.</p></fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T5" position="float">
<label>Table&#xa0;5</label>
<caption>
<p>Detected chitinases and NAGases and their cognate regulators in <italic>M. robertsii</italic>, and the homologs of these chitinases and NAGases in <italic>M. anisopliae</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">Enzyme locus in <italic>M. robertsii</italic> (accession number)</th>
<th valign="middle" align="center">Accession number of <italic>M. anisopliae</italic> homolog (protein name)</th>
<th valign="middle" align="center">Similarity %</th>
<th valign="middle" align="center">Regulators of this enzyme <sup>A</sup>
</th>
</tr>
</thead>
<tbody>
<tr>
<th valign="middle" colspan="4" align="left">Subgroup A chitinases</th>
</tr>
<tr>
<td valign="middle" align="center">MAA_02685 (XP_007818874)</td>
<td valign="middle" align="center">KFG78916 (ChiMaA1)</td>
<td valign="middle" align="center">99.0</td>
<td valign="middle" align="center">PacC &#x2191;</td>
</tr>
<tr>
<td valign="middle" align="center">MAA_04700 (XP_007820987)</td>
<td valign="middle" align="center">KFG87333 (ChiMaA4)</td>
<td valign="middle" align="center">99.0</td>
<td valign="middle" align="center">PacC &#x2191;</td>
</tr>
<tr>
<td valign="middle" align="center">MAA_03460 (XP_007819649)</td>
<td valign="middle" align="center">KFG82099 (ChiMaA5)</td>
<td valign="middle" align="center">95.8</td>
<td valign="middle" align="center">MAPK &#x2193;,<break/>Skn7 &#x2193;,<break/>PacC &#x2191;</td>
</tr>
<tr>
<td valign="middle" align="center">MAA_08154 (XP_007824343)</td>
<td valign="middle" align="center">KFG82955 (ChiMaA6)</td>
<td valign="middle" align="center">93.0</td>
<td valign="middle" align="center">Skn7 &#x2193;,<break/>PacC &#x2191;</td>
</tr>
<tr>
<td valign="middle" align="center">MAA_10256 (XP_007826445)</td>
<td valign="middle" align="center">KFG81193 (ChiMaA9)</td>
<td valign="middle" align="center">97.1</td>
<td valign="middle" align="center">PacC &#x2191;</td>
</tr>
<tr>
<th valign="middle" colspan="4" align="left">Subgroup B chitinases</th>
</tr>
<tr>
<td valign="middle" align="center">MAA_09018 (XP_007825207)</td>
<td valign="middle" align="center">KFG78638 (ChiMaB1)</td>
<td valign="middle" align="center">98.3</td>
<td valign="middle" align="center">PacC &#x2191;</td>
</tr>
<tr>
<td valign="middle" align="center">MAA_01212 (XP_007817401)</td>
<td valign="middle" align="center">KFG84275 (ChiMaB2)</td>
<td valign="middle" align="center">82.1</td>
<td valign="middle" align="center">RNS1 &#x2191;</td>
</tr>
<tr>
<td valign="middle" align="center">MAA_02744 (XP_007818933)</td>
<td valign="middle" align="center">KFG78862 (ChiMaB3)</td>
<td valign="middle" align="center">94.7</td>
<td valign="middle" align="center">MAPK &#x2193;</td>
</tr>
<tr>
<td valign="middle" align="center">MAA_00983 (XP_007817172)</td>
<td valign="middle" align="center">KFG77924 (ChiMaB4)</td>
<td valign="middle" align="center">85.6</td>
<td valign="middle" align="center">PacC &#x2191;</td>
</tr>
<tr>
<td valign="middle" align="center">MAA_00415 (XP_007816604)</td>
<td valign="middle" align="center">KFG77460 (ChiMaB5)</td>
<td valign="middle" align="center">74.0</td>
<td valign="middle" align="center">PacC &#x2191;</td>
</tr>
<tr>
<td valign="middle" align="center">MAA_09091 (XP_007825280)</td>
<td valign="middle" align="center">KFG80416 (ChiMaB7)</td>
<td valign="middle" align="center">87.7</td>
<td valign="middle" align="center">PacC &#x2191;</td>
</tr>
<tr>
<th valign="middle" colspan="4" align="left">Subgroup C chitinases</th>
</tr>
<tr>
<td valign="middle" align="center">MAA_00157 (XP_007816346) <sup>B</sup>
</td>
<td valign="middle" align="center">KFG83700 (ChiMaC1)</td>
<td valign="middle" align="center">48.5</td>
<td valign="middle" align="center">MAPK &#x2191;,<break/>COH2 &#x2191;</td>
</tr>
<tr>
<td valign="middle" align="center">MAA_10509 (XP_007826698)</td>
<td valign="middle" align="center">KFG84211 (ChiMaC4)</td>
<td valign="middle" align="center">69.3</td>
<td valign="middle" align="center">MAPK &#x2191;</td>
</tr>
<tr>
<th valign="middle" colspan="4" align="left">Subgroup D chitinases</th>
</tr>
<tr>
<td valign="middle" align="center">MAA_08315 (XP_007824504)</td>
<td valign="middle" align="center">KFG86059 (ChiMaD1)</td>
<td valign="middle" align="center">92.2</td>
<td valign="middle" align="center">MAPK &#x2193;</td>
</tr>
<tr>
<th valign="middle" colspan="4" align="left">GH20 NAGase</th>
</tr>
<tr>
<td valign="middle" align="center">MAA_10080 (XP_007826269)</td>
<td valign="middle" align="center">KFG85702 (MaNAG2)</td>
<td valign="middle" align="center">97.6</td>
<td valign="middle" align="center">PacC&#x2191;,<break/>RNS1&#x2191;</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<sup>A</sup> The effect of the regulator on the expression of target chitinase and GH20 NAGase genes is indicated by an arrow. An (&#x2191;) arrow indicates that the expression of the target gene is up-regulated by the regulator, while the (&#x2193;) arrow indicates that the expression of the target gene is down-regulated.<sup>B</sup> The enzyme exhibits sequence similarity to ChiMaC1, ChiMaC2, and ChiMaC3. ChiMaC1 displays the highest sequence similarity (48.5%).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Putative regulatory pathways and transcription factors mediating the expression of chitin-hydrolyzing enzymes in <italic>M. anisopliae</italic>. GlcNAc is imported to the cytoplasm via the N&#x2010;acetylglucosamine transporter NGT1, causing the activation of the Ron1 transcription factor. The accumulation of GlcNAc in the cell causes a feedback inhibition of chitinolytic enzyme activities. The accumulation of glucose in the cell activates the carbon catabolite repressor CreA, which represses the activity of chitinases and NAGases. Changes in environmental conditions activate the two-component system sensor histidine kinase (Sln1), which activates downstream proteins. The activation of the Skn7 transcription factor represses the chitinase genes. Fus3 MAPK activates the RNS1 and Ste12 transcription factors, which up-regulate the expression of chitinolytic enzymes. Alkaline pH activates the PacC protein, which up-regulates the expression of chitinases and NAGases. In addition, Sre1 and COH2 are transcription factors that regulate the expression of chitinases in <italic>M. anisopliae</italic>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="ffunb-07-1732437-g004.tif">
<alt-text content-type="machine-generated">Diagram illustrating signaling pathways regulating chitinase- and NAGase-encoding gene expression in response to environmental changes, glucose, GlcNAc, and pH, including pathways via MAPK cascade, PacC, Ron1, Skn7, and multiple transcription factors.</alt-text>
</graphic></fig>
<p>PacC is another regulator of chitinase expression in entomopathogenic fungi. PacC is a pH-dependent transcription factor that governs fungal adaptation to ambient environment. Under acidic pH conditions, PacC exhibits a closed protein conformation that protects the C-terminal domain from protease hydrolysis, and thus PacC remains in the cytoplasm. When pH changes to alkaline, PacC is activated by two proteolysis steps of the C-terminal region, which causes the protein to localize to the nucleus. Inside the nucleus, PacC binds to the consensus sequence 5&#x2032;-GCCA(A/G)G-3&#x2032; (<xref ref-type="bibr" rid="B65">Li et&#xa0;al., 2022a</xref>). Deletion of <italic>pacC</italic> in <italic>M. robertsii</italic> resulted in a strain with impaired virulence and reduced adaptation to changes in pH. Additionally, the strain showed reduced chitinase activity; however, protease activity was not affected. <italic>In silico</italic> analysis of the promoter region of <italic>M. robertsii</italic> chitinases revealed the presence of the PacC consensus binding sequence in nine chitinase-encoding genes and one GH20 NAGase (<xref ref-type="bibr" rid="B48">Huang et&#xa0;al., 2015</xref>). Homologs of PacC transcription factor and PacC-regulated chitinases and NAGases have been identified in <italic>M. anisopliae</italic> (<xref ref-type="table" rid="T4"><bold>Tables&#xa0;4</bold></xref> and <xref ref-type="table" rid="T5"><bold>5</bold></xref>). This suggests similar roles for PacC in <italic>M. anisopliae</italic> (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4</bold></xref>).</p>
<p><xref ref-type="bibr" rid="B33">Gao et&#xa0;al. (2011)</xref> found that MAP kinase and cAMP dependent protein kinase A (PKA) pathways are up-regulated in <italic>M. anisopliae</italic> after challenging mycelia with cuticle from cockroach and locust, suggesting a role for both kinases in regulating the chitinase gene expression. Nevertheless, the relative contributions of both pathways in regulating chitinase expression were not investigated. Similarly, <xref ref-type="bibr" rid="B23">Chen et&#xa0;al. (2016)</xref> have shown that the MAPK cascade regulates the expression of chitinase genes in <italic>M. robertsii</italic> during infection, with two chitinases up-regulated (MAA_00157 and MAA_10509) and four chitinases down-regulated (MAA_08315, MAA_02744, MAA_03460, and MAA_00424). However, the downstream transcription factors that regulate chitinase gene expression were not identified in this study. In addition, the MAPK pathway has been reported to be conserved in several <italic>Metarhizium</italic> species other than <italic>M. anisopliae</italic> (<xref ref-type="bibr" rid="B119">Tang et&#xa0;al., 2022</xref>). We identified homologs of MAPK cascade proteins and the MAPK-regulated chitinases in <italic>M. anisopliae</italic> E6 strain (<xref ref-type="table" rid="T4"><bold>Tables&#xa0;4</bold></xref> and <xref ref-type="table" rid="T5"><bold>5</bold></xref>).</p>
<p>Several regulators control the expression of chitinase genes in other entomopathogenic fungi. Ron1 is a transcription factor and a key regulator of GlcNAc catabolism (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4</bold></xref>). In addition, Ron1 plays an important role in fungal virulence, extracellular chitinase activities, and cell wall biosynthesis of the entomopathogenic fungus <italic>B. bassiana</italic> (<xref ref-type="bibr" rid="B94">Qiu et&#xa0;al., 2022</xref>). Sre1 is another transcription factor that regulates chitinase gene expression in fungi (<xref ref-type="bibr" rid="B35">G&#xf3;mez et&#xa0;al., 2020</xref>). Deletion of <italic>sre1</italic> in the mycoparasitic fungus <italic>Clonostachys rosea</italic> down-regulated the expression of chitinase genes (<xref ref-type="bibr" rid="B92">Piombo et&#xa0;al., 2024</xref>). In addition, RNS1 is a Myb transcription factor that is activated by Fus3 MAPK. Activated RNS1 binds to the 5&#x2019;-ACCAGAC-3&#x2019; sequence in the promoter region and up-regulates the expression of cuticle-degrading genes, including one chitinase and one NAGase (<xref ref-type="bibr" rid="B76">Meng et&#xa0;al., 2021</xref>). Ste12 is a transcription factor that is also activated by Fus3 MAPK. Deletion of <italic>ste12</italic> in <italic>M. rileyi</italic> reduced chitin content in conidia; however, the target chitinases were not investigated (<xref ref-type="bibr" rid="B69">Lin et&#xa0;al., 2021</xref>). Homologs of Ron1, Sre1, RNS1, and Ste12, and the chitinolytic enzymes that are controlled by these regulators, are conserved in <italic>M. anisopliae</italic> (<xref ref-type="table" rid="T4"><bold>Tables&#xa0;4</bold></xref> and <xref ref-type="table" rid="T5"><bold>5</bold></xref>). This suggests a similar role for their homologs in <italic>M. anisopliae</italic> (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4</bold></xref>); however, the molecular characterization of these proteins is required. Furthermore, two novel transcription factors, designated COH1 and COH2, were shown to regulate chitinases in <italic>M. robertsii</italic>. Both transcription factors are required for fungal colonization of the hemocoel. In the &#x394;<italic>coh2</italic> mutant, gene expression of three chitinases (MAA_00157, MAA_10456, and MAA_11305) was reported to be down-regulated (<xref ref-type="bibr" rid="B134">Zhang et&#xa0;al., 2021</xref>). However, when we ran BLAST analysis of these three chitinases, only a homolog of MAA_00157 was identified in the <italic>M. anisopliae</italic> genome. In contrast, MAA_10456 showed no homology to any known proteins. Our BLAST analysis of MAA_11305 identified a hypothetical protein MANI_008911 (accession number: KFG79813) with no GH18 catalytic domain. Instead, the protein harbors an aminoglycoside 3&#x2019;-phosphotransferase and Choline kinase domain, which suggests that this protein is not a chitinase. For reviews on the role of transcription factors in entomopathogenic fungi, we recommend the reader to refer to a recent review (<xref ref-type="bibr" rid="B108">Song et&#xa0;al., 2025</xref>).</p>
<p>The mechanism that mediates GlcNAc transportation into the cell has been explored in <italic>T. reesei</italic>. Extracellular GlcNAc is imported to the cell via the N&#x2010;acetylglucosamine transporter (NGT1), which belongs to the major facilitator superfamily (MFS). Once GlcNAc is internalized in the cell, it activates catabolic gene expression of approximately 2100 genes. Ron1 serves as a major regulator for these genes, while the carbon-catabolite repressor CRE1 is a key repressor (<xref ref-type="fig" rid="f4"><bold>Figure&#xa0;4</bold></xref>) (<xref ref-type="bibr" rid="B110">Song et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B122">Ullah et&#xa0;al., 2025</xref>). The <italic>M. anisopliae</italic> genome harbors a putative homolog of NGT1 (<xref ref-type="table" rid="T4"><bold>Table&#xa0;4</bold></xref>). In addition, the carbon catabolite-repression mechanism has been proposed in <italic>M. anisopliae</italic> based on the fact that chitinase activity is abrogated with increasing concentrations of glucose alone or in combination with chitin (<xref ref-type="bibr" rid="B60">Krieger de Moraes et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B8">Barreto et&#xa0;al., 2004</xref>). However, these studies lack comprehensive molecular analyses.</p>
</sec>
<sec id="s6">
<label>6</label>
<title>Perspectives and applications of chitinases from <italic>M. anisopliae</italic></title>
<p>The potential of <italic>M. anisopliae</italic> as a biocontrol agent against agricultural pests have been reviewed by many reports (<xref ref-type="bibr" rid="B32">Ferreira and Soares, 2023</xref>; <xref ref-type="bibr" rid="B77">Mesquita et&#xa0;al., 2023</xref>). Chitinases from <italic>M. anisopliae</italic> have been extensively characterized at the molecular and biochemical levels; however, relatively few studies have explored their broader applications beyond insect pathogenicity, particularly in plant protection and strain improvement strategies. Emerging research demonstrates that <italic>M. anisopliae</italic> chitinases can be exploited both directly and indirectly to enhance resistance against plant pathogens and insect pests.</p>
<p>Several studies have evaluated the potential of <italic>M. anisopliae</italic> chitinases in engineering transgenic plants with improved resistance to fungal diseases and insect infestations. For example, transient expression of the <italic>chit1</italic> gene from <italic>M. anisopliae</italic> in cotton plants resulted in 9% mortality of adult whiteflies, <italic>Bemisia tabaci</italic>, feeding on the transformed plants (<xref ref-type="bibr" rid="B4">Anwar et&#xa0;al., 2019</xref>). Similarly, tobacco plants expressing <italic>chit1</italic> under the control of the CaMV 35S promoter exhibited enhanced resistance to infection by the plant pathogenic fungus <italic>Rhizoctonia solani</italic> (<xref ref-type="bibr" rid="B57">Kern et&#xa0;al., 2010</xref>). These findings indicate that <italic>Metarhizium</italic>-derived chitinases can function effectively in heterologous plant systems to confer protection against both fungal and insect threats.</p>
<p>In addition to plant-based approaches, chitinases from <italic>M. anisopliae</italic> have been used to enhance antagonistic activity in mycoparasitic fungi, thereby improving biological control potential. Overexpression of the <italic>chit1</italic> gene in <italic>T. harzianum</italic> significantly increased antagonism against the plant pathogen <italic>Botrytis cinerea</italic> (<xref ref-type="bibr" rid="B66">Li et&#xa0;al., 2012</xref>). Likewise, expression of <italic>M. anisopliae</italic> chitinases in <italic>T. koningi</italic> enhanced lethality against the Asian corn borer larvae (<xref ref-type="bibr" rid="B129">Xia et&#xa0;al., 2018</xref>). These studies highlight the versatility of <italic>M. anisopliae</italic> chitinases as functional tools for improving fungal biocontrol agents across different host systems.</p>
<p>Beyond these applied perspectives, chitinases play a central mechanistic role in fungal biocontrol efficacy. They are considered key virulence determinants that directly influence the performance of entomopathogenic fungi by mediating degradation of the insect cuticle during host penetration. In <italic>M. anisopliae</italic>, chitinases act synergistically with proteases and lipases to enable successful entry into the insect hemocoel, a prerequisite for infection and host colonization (<xref ref-type="bibr" rid="B84">Ortiz-Urquiza and Keyhani, 2013</xref>; <xref ref-type="bibr" rid="B127">Wang and Wang, 2017</xref>). The secretion, regulation, and enzymatic activity of chitinases are therefore critical factors governing biocontrol success.</p>
<p>Experimental evidence further demonstrates that enhancing chitinase expression can improve fungal virulence and infection efficiency. Overexpression of the chitinase gene <italic>Bbchit1</italic> in <italic>Beauveria bassiana</italic> resulted in accelerated host mortality and increased pathogenicity (<xref ref-type="bibr" rid="B30">Fang et&#xa0;al., 2005</xref>). These results provide proof-of-concept that strengthening cuticle-degrading capacity can enhance the effectiveness of fungal biocontrol agents, although such approaches must be carefully evaluated for ecological safety and regulatory compliance.</p>
<p>Finally, successful biocontrol applications depend not only on the genetic potential but also on the effective enzyme activity at the host surface. Sustained contact between fungal propagules and the insect cuticle is essential for sufficient enzymatic degradation to occur, emphasizing the importance of formulation and application strategies that support chitinase-mediated penetration (<xref ref-type="bibr" rid="B72">Lovett and St. Leger, 2017</xref>). Consequently, integrating molecular insights into chitinase function with practical deployment strategies provides a rational framework for improving the consistency, reliability, and performance of <italic>Metarhizium</italic>-based biological control systems (<xref ref-type="bibr" rid="B127">Wang and Wang, 2017</xref>).</p>
</sec>
<sec id="s7" sec-type="discussion">
<label>7</label>
<title>Discussion</title>
<p><italic>M. anisopliae</italic> is a promising entomopathogenic fungus that is commercially used in the biological control of insect pests. Overall, this review emphasizes the diversity of <italic>M. anisopliae</italic> chitinases, and highlights their fungal subgroup distribution, domain architecture, and the conserved mechanisms underlying gene expression. <italic>M. anisopliae</italic> possesses a complex arsenal of chitin-degrading enzymes. Nevertheless, only three chitinases were characterized. Therefore, a significant amount of work is still required to characterize the remaining chitinases. Similarly, the identification of signaling pathways that regulate the expression of chitinase genes remains elusive. Chitinase genes encode enzymes with overlapping activities, and therefore other chitinases can mask the phenotype of the deleted gene, a mechanism known as functional redundancy. Because of the redundancy of chitinases in the genome, it is challenging to identify the precise function of an individual chitinase gene using a single knockout mutant. Therefore, double- or triple-knockout mutants should be generated. However, the disruption of multiple chitinase genes in a single strain is limited by the number of selectable markers currently available. One way to overcome this challenge is by recycling the selectable marker genes using the Cre&#x2013;loxP recombination system. Another approach is to employ CRISPR&#x2013;Cas9 technology to simultaneously knock out multiple chitinase genes or to develop a marker-free gene-deletion strategy.</p>
<p>The identification of chitinases and their regulatory proteins can also be achieved via a combination of genomics, transcriptomics, and proteomics approaches, which allow for high-throughput analyses of chitinases and their upstream regulators. For example, investigating the expression profiling of chitinase genes under different insect cuticular components, host developmental stages, or environmental stresses provides insight into the conditions under which chitinase genes are turned on. Virulence assays across multiple insect hosts and environmental conditions reveal context-dependent redundancy. In addition, heterologous expression of <italic>M. anisopliae</italic> chitinases in bacteria, filamentous fungi, and yeast allows for deciphering the biochemical properties of chitinases and their biological function. Transgenic plants that are resistant to insect pests or fungal pathogens can be generated by expressing <italic>M. anisopliae</italic> chitinases in plants. Domain engineering is another approach to analyze the function of domains and engineer chimeric chitinases for industrial degradation of chitin.</p>
</sec>
</body>
<back>
<sec id="s8" sec-type="author-contributions">
<title>Author contributions</title>
<p>QA: Writing &#x2013; original draft, Visualization, Writing &#x2013; review &amp; editing. KA: Writing &#x2013; review &amp; editing, Writing &#x2013; original draft. NA-K: Writing &#x2013; original draft, Writing &#x2013; review &amp; editing. S-EA:&#xa0;Writing &#x2013; review &amp; editing, Writing &#x2013; original draft.</p></sec>
<sec id="s10" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The author(s) declared that this work was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p></sec>
<sec id="s11" sec-type="ai-statement">
<title>Generative AI statement</title>
<p>The author(s) declared that generative AI was not used in the creation of this manuscript.</p>
<p>Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.</p></sec>
<sec id="s12" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p></sec>
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