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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Fungal Biol.</journal-id>
<journal-title>Frontiers in Fungal Biology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Fungal Biol.</abbrev-journal-title>
<issn pub-type="epub">2673-6128</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/ffunb.2023.1213997</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Fungal Biology</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Fungi as mutualistic partners in ant-plant interactions</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Mayer</surname>
<given-names>Veronika E.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1171089"/>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Voglmayr</surname>
<given-names>Hermann</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Blatrix</surname>
<given-names>Rumsais</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2341950"/>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Orivel</surname>
<given-names>J&#xe9;r&#xf4;me</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1843403"/>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Leroy</surname>
<given-names>C&#xe9;line</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2332688"/>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Botany and Biodiversity Research &#x2013; Division of Structural and Functional Botany, University of Vienna</institution>, <addr-line>Wien</addr-line>, <country>Austria</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Department of Botany and Biodiversity Research &#x2013; Mycology Research Group, University of Vienna</institution>, <addr-line>Wien</addr-line>, <country>Austria</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>CEFE, University of Montpellier, CNRS, EPHE, IRD</institution>, <addr-line>Montpellier</addr-line>, <country>France</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>EcoFoG, AgroParisTech, CIRAD, CNRS, INRAE, Universit&#xe9; des Antilles, Universit&#xe9; de Guyane</institution>, <addr-line>Kourou</addr-line>, <country>France</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>AMAP, Universit&#xe9; de Montpellier, CIRAD, CNRS, INRAE, IRD</institution>, <addr-line>Montpellier</addr-line>, <country>France</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Patricia Julia Folgarait, National University of Quilmes, Argentina</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: John Longino, The University of Utah, United States; Gloria Angelica Gonzalez Gonzalez Hernandez, University of Guanajuato, Mexico</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Veronika E. Mayer, <email xlink:href="mailto:veronika.mayer@univie.ac.at">veronika.mayer@univie.ac.at</email>
</p>
</fn>
<fn fn-type="other" id="fn003">
<p>&#x2020;ORCID: Veronika E. Mayer, <uri xlink:href="https://orcid.org/0000-0001-6662-8237">orcid.org/0000-0001-6662-8237</uri>; Hermann Voglmayr, <uri xlink:href="https://orcid.org/0000-0001-7666-993X">orcid.org/0000-0001-7666-993X</uri>; Rumsais Blatrix, <uri xlink:href="https://orcid.org/0000-0003-1662-7791">orcid.org/0000-0003-1662-7791</uri>; J&#xe9;r&#xf4;me Orivel, <uri xlink:href="https://orcid.org/0000-0002-5636-3228">orcid.org/0000-0002-5636-3228</uri>; C&#xe9;line Leroy, <uri xlink:href="https://orcid.org/0000-0003-4859-8040">orcid.org/0000-0003-4859-8040</uri>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>02</day>
<month>10</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>4</volume>
<elocation-id>1213997</elocation-id>
<history>
<date date-type="received">
<day>28</day>
<month>04</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>11</day>
<month>09</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Mayer, Voglmayr, Blatrix, Orivel and Leroy</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Mayer, Voglmayr, Blatrix, Orivel and Leroy</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Associations between fungi and ants living in mutualistic relationship with plants (&#x201c;plant-ants&#x201d;) have been known for a long time. However, only in recent years has the mutualistic nature, frequency, and geographical extent of associations between tropical arboreal ants with fungi of the ascomycete order Chaetothyriales and Capnodiales (belonging to the so-called &#x201c;Black Fungi&#x201d;) become clear. Two groups of arboreal ants displaying different nesting strategies are associated with ascomycete fungi: carton-building ants that construct nest walls and galleries on stems, branches or below leaves which are overgrown by fungal hyphae, and plant-ants that make their nests inside living plants (myrmecophytes) in plant provided cavities (domatia) where ants cultivate fungi in small delimited &#x201c;patches&#x201d;. In this review we summarize the current knowledge about these unsuspected plant-ant-fungus interactions. The data suggest, that at least some of these ant-associated fungi seem to have coevolved with ants over a long period of time and have developed specific adaptations to this lifestyle.</p>
</abstract>
<kwd-group>
<kwd>ants</kwd>
<kwd>Chaetothyriales</kwd>
<kwd>Capnodiales</kwd>
<kwd>specificity</kwd>
<kwd>transmission</kwd>
<kwd>evolutionary history</kwd>
<kwd>function</kwd>
</kwd-group>
<counts>
<fig-count count="4"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="119"/>
<page-count count="14"/>
<word-count count="7966"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Fungi-Animal Interactions</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Associations between fungi and insects are manifold, ranging from pathogenic (<xref ref-type="bibr" rid="B48">Hajek and Leger, 1994</xref>) to mutualistic (<xref ref-type="bibr" rid="B7">Biedermann and Vega, 2020</xref>). The most well-known mutualistic association in ants is the nutritional relationship between fungus growing ants (tribe Attini, subtribe Attina) and basidiomycete fungi (Agaricales: Agaricaceae and Pterulaceae) which are usually cultivated as mycelia and used as the primary food source for the ant colony (<xref ref-type="bibr" rid="B115">Weber, 1972</xref>; <xref ref-type="bibr" rid="B100">Schultz and Brady, 2008</xref>). However, there are other less well-known mutualistic interactions between ants and ascomycete fungi identified as Chaetothyriales, with Capnodiales also occurring frequently (<xref ref-type="bibr" rid="B27">Defossez et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B77">Mayer and Voglmayr, 2009</xref>; <xref ref-type="bibr" rid="B95">Ruiz-Gonzalez et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B85">Nepel et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B62">Kokolo et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B108">Vasse et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B42">Gegenbauer et&#xa0;al., 2023</xref>). Both Chaetothyriales and Capnodiales belong to the so-called &#x201c;Black Fungi&#x201d;, a diverse group of slow-growing ascomycetes with melanized hyphae. Black Fungi have been found in mutualistic association with Old World <italic>Lasius</italic> ants on the walls of nests inside dead trees (<xref ref-type="bibr" rid="B64">Lagerheim, 1900</xref>; <xref ref-type="bibr" rid="B72">Maschwitz and H&#xf6;lldobler, 1970</xref>; <xref ref-type="bibr" rid="B98">Schlick-Steiner et&#xa0;al., 2008</xref>), with mound-building <italic>Formica</italic> ants (<xref ref-type="bibr" rid="B67">Lindstr&#xf6;m et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B68">Lindstr&#xf6;m et&#xa0;al., 2021</xref>), and with various arboreal ants in the tropics. The latter association between arboreal ants and fungi is the focus of the present review because this type of association has received much attention within the past 15 years.</p>
<p>Arboreal ants (= species that forage and nest mostly or entirely on plants) make up about a third of the total ant fauna in tropical rainforests (<xref ref-type="bibr" rid="B69">Longino and Colwell, 2020</xref>). A time-scaled ant phylogeny suggests that arboreal foraging evolved in the early Cretaceous followed by arboreal nesting in the late Cretaceous (<xref ref-type="bibr" rid="B82">Nelsen et&#xa0;al., 2018</xref>). Under conditions of limited nesting space availability in arboreal ant communities in tropical forests (<xref ref-type="bibr" rid="B118">Wilson, 1987</xref>; <xref ref-type="bibr" rid="B34">Fiala and Maschwitz, 1992</xref>; <xref ref-type="bibr" rid="B39">Fonseca, 1993</xref>; <xref ref-type="bibr" rid="B16">Camarota et&#xa0;al., 2020</xref>) that accompanies the high diversity of ants (<xref ref-type="bibr" rid="B61">Kass et&#xa0;al., 2022</xref>; <xref ref-type="bibr" rid="B99">Schultheiss et&#xa0;al., 2022</xref>) niche differentiation by development of different nesting strategies may be a crucial factor for arboreal ant communities to allow a broader use of limited resources.</p>
<p>Three categories of arboreal ants differing in their nesting strategy can be defined: (1) a group of opportunists that use a range of cavities and crevices in plants as incidental nest sites to shelter the colonies (<xref ref-type="bibr" rid="B55">H&#xf6;lldobler and Wilson, 1990</xref>; <xref ref-type="bibr" rid="B86">Novais et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B89">Philpott et&#xa0;al., 2018</xref>), many of them making constructions with fibers, resin, soil, sand, and organic matter to reduce entrance sizes and improve the cavity defense (<xref ref-type="bibr" rid="B91">Priest et&#xa0;al., 2021</xref>). (2) a group of carton-builders that make <italic>de novo</italic> constructions of carton nests and/or galleries independent from existing cavities; construction materials are plant derived bark and wood fragments, trichomes, mosses and epiphylls, and hyphae of ascomycete so-called &#x201c;Black Fungi&#x201d; (<xref ref-type="bibr" rid="B116">Wei&#xdf;flog, 2001</xref>; <xref ref-type="bibr" rid="B77">Mayer and Voglmayr, 2009</xref>; <xref ref-type="bibr" rid="B95">Ruiz-Gonzalez et&#xa0;al., 2011</xref>). Ant-constructed carton with fungi can constitute walls of free-hanging nests on the lower surface of leaves as in <italic>Crematogaster</italic> and <italic>Technomyrmex</italic> (<xref ref-type="bibr" rid="B116">Wei&#xdf;flog, 2001</xref>; <xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al., 2011</xref>) (see Figure&#xa0;19 in <xref ref-type="bibr" rid="B116">Wei&#xdf;flog, 2001</xref>) (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1H</bold>
</xref>), runway galleries along stems, branches and leaf surfaces as found on <italic>Tetrathylacium macrophyllum</italic> built by <italic>Azteca brevis</italic> ants (<xref ref-type="bibr" rid="B77">Mayer and Voglmayr, 2009</xref>; <xref ref-type="bibr" rid="B75">Mayer et&#xa0;al., 2017</xref>) (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1I, O</bold>
</xref>), or cardboard-like &#x201c;carton&#x201d; structures sheathing entrances to their nest side, protecting flocks of scale insects, or partitioning the nest interior (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1A</bold>
</xref>). Interwoven plant hairs manured with the excrements of the ants like in <italic>Monomorium</italic> sp. (<xref ref-type="bibr" rid="B116">Wei&#xdf;flog, 2001</xref>) (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1F</bold>
</xref>), or in the <italic>Hirtella physophora</italic> - <italic>Allomerus decemarticulatus</italic> association (<xref ref-type="bibr" rid="B31">Dejean et&#xa0;al., 2005</xref>) (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1M</bold>
</xref>) are also used. (3) a category of plant-ants that live inside &#x201c;myrmecophytes&#x201d;, plants with organs that have been transformed into hollow cavities called &#x201c;domatia&#x201d; which can be derived from stems (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2A, C-E, K, L, N</bold>
</xref>), leaf pouches, leaf petioles, stipules, root tubers, rhizomes, or hypocotyls (<xref ref-type="bibr" rid="B20">Chomicki and Renner, 2015</xref>), being induced by the plants themselves without any induction from plant-ants (but see <xref ref-type="bibr" rid="B14">Bl&#xfc;thgen and Wesenberg, 2001</xref>; <xref ref-type="bibr" rid="B41">Gaume et&#xa0;al., 2005</xref>). In addition to shelter, some myrmecophytes offer an immediate source of nutrients for the inhabiting ant colony through carbohydrate-rich extrafloral nectaries (<xref ref-type="bibr" rid="B52">Heil et&#xa0;al., 2000</xref>; <xref ref-type="bibr" rid="B13">Bl&#xfc;thgen et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B44">Gonzalez-Teuber and Heil, 2009</xref>) and, in some cases, protein- and lipid-rich food bodies (<xref ref-type="bibr" rid="B37">Folgarait and Davidson, 1994</xref>, <xref ref-type="bibr" rid="B38">Folgarait and Davidson, 1995</xref>; <xref ref-type="bibr" rid="B53">Heil et&#xa0;al., 1998</xref>; <xref ref-type="bibr" rid="B36">Fischer et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B50">Hatada et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B51">Heil et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B114">Webber et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B8">Bischof et&#xa0;al., 2013</xref>). Myrmecophytes are found almost exclusively in the tropical regions of Australasia, Africa and the New World (<xref ref-type="bibr" rid="B20">Chomicki and Renner, 2015</xref>), where the pressure of pathogens and herbivores is high, and nutrients are limited (<xref ref-type="bibr" rid="B24">Davidson, 1997</xref>; <xref ref-type="bibr" rid="B60">Kaspari and Yanoviak, 2001</xref>). Like in free nest structures, Black Fungi are also present in domatia (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). This has been documented for a long time (<xref ref-type="bibr" rid="B79">Miehe, 1911</xref>; <xref ref-type="bibr" rid="B4">Bailey, 1920</xref>), but due to the unspectacular appearance, difficulties in cultivation and taxonomic assignment, and lack of conclusive evidence of mutualism between fungi and the myrmecophytic partners, fungi in ant-plant associations did not receive much attention. Only recently, the development of molecular techniques has allowed the taxonomic assignment of fungi found in many unrelated ant-plant associations in the tropics worldwide (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Nest walls, galleries and carton in arboreal ant nests with fungi from &#x201c;Functional group 1&#x201d;. <bold>(A&#x2013;C)</bold> Fungi from Capnodiales, <bold>(D&#x2013;O)</bold> fungi from Chaetothyriales. <bold>(A, B)</bold> <italic>Crematogaster</italic> ant carton nest from Cameroon (sample BN-Lon33), <bold>(B)</bold> Capnodiales hyphae from this carton sample germinating on 2% MEA. <bold>(C)</bold> Capnodiales hyphae with dark brown globose monilioid cells from a nest in Malaysia inhabited parabiotically by <italic>Crematogaster</italic> sp. and <italic>Camponotus</italic> sp. (sample M-Camp2). <bold>(D)</bold> Chaetothyriales hyphae germinating on 2% MEA from a <italic>Crematogaster</italic> sp. ant carton (sample CN-Cre-BO3) and <bold>(E)</bold> elongated monilioid cells with coarsely verrucose walls of a <italic>Pheidole</italic> carton nest (sample CN-Phe1), both from Cameroon. <bold>(F)</bold> <italic>Monomorium</italic> ant nest from Malaysia (sample M-Mo) built of loosely interwoven plant trichomes stabilized with Chaetothyriales hyphae. <bold>(G)</bold> Hyphae of two Chaetothyriales strains from the <italic>Monomorium</italic> ant nest shown in <bold>(F)</bold>. <bold>(H)</bold> Nest of <italic>Technomyrmex</italic> sp. found in Borneo on a lower leaf surface and stabilized with hyphae. <bold>(I)</bold> Dark-brown runway gallery of <italic>Azteca brevis</italic> on a branch of <italic>Tetrathylacium macrophyllum</italic> in Costa Rica. <bold>(J)</bold> The scanning electron microscope picture shows that the carton of the galleries consists of plant material with densely intertwined chaetothyrialean hyphae. <bold>(K, L)</bold> Strains with different morphology were found. <bold>(M)</bold> Carton gallery of <italic>Allomerus decemarticulatus</italic> on <italic>Hirtella physophora</italic> from French Guiana built from plant trichomes which the ants obtained by clearing a path and stabilized with chaetothyrialean hyphae. During the construction process, holes are left which are guarded by <italic>Allomerus</italic> workers throughout the day. <bold>(N, O)</bold> The construction and stability of the galleries built by <italic>Allomerus</italic> ants allow a peculiar ambush tactic to capture prey. <bold>(N)</bold> <italic>Allomerus</italic> workers had taken up positions beneath the holes with their mandibles wide open grasping the legs or antennae of other arthropods. <bold>(O)</bold> The prey is immobilised by stretching its legs, antennae or wings against the gallery so that the workers can kill it. Bars, <bold>(E, G, K, L)</bold> 10 &#xb5;m, <bold>(B&#x2013;D)</bold> 20 &#xb5;m, <bold>(J)</bold> 100&#xb5;m, <bold>(A)</bold> 3mm, <bold>(I, F)</bold> 5mm, <bold>(M)</bold> 1mm. <bold>(H)</bold> with courtesy of F. Etl. MEA, malt extract agar.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="ffunb-04-1213997-g001.tif"/>
</fig>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Domatia of ant-plants (myrmecophytes) with patches that contain chaetothyrialean fungi. <bold>(A)</bold> Opened branch of <italic>Barteria fistulosa</italic> (Passifloraceae) from Cameroon with <italic>Tetraponera aethiops</italic> and a black patch with Chaetothyrialeas. <bold>(B)</bold> The fungal symbiont (CBS 134920) of <italic>T. aethiops</italic> growing on 2% MEA showing conidiophores with conidia. <bold>(C, D)</bold> <italic>Cordia alliodora</italic> (Boraginaceae) from Costa Rica with swollen hollow nodes which are inhabited by <italic>Azteca</italic> sp. <bold>(D)</bold> The domatium cavity is structured into compartments with a carton (arrow). <bold>(E)</bold> Opened <italic>Cecropia obtusifolia</italic> stem inhabited with <italic>Azteca constructor</italic>. The black round patches are containing Chaetothyriales. <bold>(F)</bold> A squash mount of fresh patches from <italic>C obtusifolia</italic> inhabited by <italic>A. constructor</italic> made in the field. Numerous hyphae (stained with calcofluor white) pervade the organic matter (blurry parts) of the patches. <bold>(G)</bold> Hyphae of a pure culture (CBS 132003) of the <italic>Azteca/Cecropia</italic> association growing on 2% MEA with spores and conidiophorous cells (arrow). <bold>(H-J)</bold> Carton made of scratched parenchyma tissue from the inner domatium wall <bold>(H)</bold> of the same <italic>Cecropia</italic> individual as in <bold>(E)</bold> with eggs and larvae (white dots) on the carton surface. <bold>(I)</bold> Numerous needle-like black conidiophores (arrows) were found on this carton. <bold>(J)</bold> Close-up of a needle like conidiophore from <bold>(I)</bold>. <bold>(K)</bold> <italic>Triplaris americana</italic> (Polygonaceae) branch with an entrance hole from outside, <bold>(L)</bold> opened showing a domatium inhabited with <italic>Pseudomyrmex</italic> sp. and a black fungal patch. <bold>(M)</bold> Conidiophores (arrow) with conidia (asterisk) from a patch in a <italic>Triplaris americana</italic> domatium. <bold>(N)</bold> Opened leaf petiole of <italic>Tachigali paniculata</italic> inhabited by <italic>Pseudomyrmex penetrator</italic> ants, showing blackish fungal patches in some places covered with masses of nematodes (white parts). <bold>(O)</bold> Conidiophores from the patch shown in <bold>(N)</bold>. Bars, <bold>(A, E, K&#x2013;M)</bold> 2cm, <bold>(C, D, H)</bold> 1cm, <bold>(B, G, I, M)</bold> 10&#xb5;m, <bold>(F, O)</bold> 20&#xb5;m. MEA, maltose extract agar.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="ffunb-04-1213997-g002.tif"/>
</fig>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Geographical distribution of Chaetothyriales growing in ant nests in hollow plant structures (domatia). The bars indicate the number of plant (green) and ant (brown) genera that are known to house ant-associated fungi. The numbers are based on Table&#xa0;1 in <xref ref-type="bibr" rid="B74">Mayer et&#xa0;al., 2014</xref>. While fungi growing in domatia are restricted to the tropics, carton fungi can also be found in temperate regions.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="ffunb-04-1213997-g003.tif"/>
</fig>
</sec>
<sec id="s2">
<label>2</label>
<title>Two functional groups of Black Fungi</title>
<p>Black Fungi associated with ants can be subdivided into two main functional groups that differ substantially: group 1 are those that occur on ant-constructed free-hanging walls of nests and galleries built by the ants, whilst group 2 are those that occur inside the domatia of myrmecophytes (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Overview on the two major groups of tropical ant-associated melanized fungi, the substrate and environmental conditions they are exposed to.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="ffunb-04-1213997-g004.tif"/>
</fig>
<sec id="s2_1">
<label>2.1</label>
<title>Functional Group 1: exposed to the environment on nest walls and galleries (&#x201c;carton-fungi&#x201d;)</title>
<p>Ant-associated fungi of Functional Group I are exposed to the environment and must be able to withstand extreme conditions like heavy rain, high temperatures, desiccation, intense solar radiation, nutrient scarcity, and a constant exposure to fungal competitors. Chaetothyriales (Ascomycota, Eurotiomycetes) and Capnodiales (including Mycosphaerellales) (Ascomycota, Dothideomycetes) were frequently isolated from hyphal fragments of nest walls, galleries, and carton structures, as were Venturiaceae (Ascomycota, Dothideomycetes, Pleosporales) in rare cases (<xref ref-type="bibr" rid="B77">Mayer and Voglmayr, 2009</xref>; <xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B102">Seipke et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B85">Nepel et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B30">Dejean et&#xa0;al., 2023</xref>). Strains that occur in this environment have highly melanized cell walls (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1B-E, G, K, L</bold>
</xref>) as melanization is enabling fungi to tolerate physical stress (<xref ref-type="bibr" rid="B22">Cordero and Casadevall, 2017</xref>). Fungi of this group rarely sporulate (<xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al., 2011</xref>), which is common for Trichomeriaceae (Ascomycota, Eurotiomycetes, Chaetothyriales) in the natural habitat (<xref ref-type="bibr" rid="B21">Chomnunti et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B92">Quan et&#xa0;al., 2022</xref>); instead they may be dispersed primarily as hyphal fragments by the ants or by air and water movement.</p>
<p>Genomes of two nest-wall species from Chaetothyriales did not show particular differences compared to species not associated with ants (<xref ref-type="bibr" rid="B105">Teixeira et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B92">Quan et&#xa0;al., 2022</xref>) and do not seem to have evolved specific adaptations.</p>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Functional Group 2: hidden inside myrmecophytes (&#x201c;domatia fungi&#x201d;)</title>
<p>Black Fungi of the second functional group live within the domatia of myrmecophytes and, therefore, in a completely distinct micro-habitat to the first group. Hot-spots for fungal growth are round, blackish &#x201c;patches&#x201d; of a very regular shape and thickness (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2A, E, L, N</bold>
</xref>) which are actively constructed by the ants by piling up parenchyma scratched from the respective domatia walls, or, in older domatia, by depositing exoskeletons of dead nest members (<xref ref-type="bibr" rid="B9">Blatrix et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B27">Defossez et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B84">Nepel et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B76">Mayer et&#xa0;al., 2018</xref>). Thus, the activities of ants probably have a strong impact on fungal morphogenesis. Apart from patches, fungi may grow on structures built by some ant species from chewed plant material to divide the domatium space into compartments (e.g. in the <italic>Cordia alliodora &#x2013; Azteca</italic> sp. association, <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2D</bold>
</xref>) and to store eggs, larvae, and pupae (e.g. in the <italic>Cecropia obtusifolia</italic> &#x2013; <italic>Azteca constructor</italic> association, <xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2H, J</bold>
</xref>).</p>
<p>The vast majority of ant-associated fungi in domatia belong to Chaetothyriales (<xref ref-type="bibr" rid="B27">Defossez et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B62">Kokolo et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B84">Nepel et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B108">Vasse et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B70">Lucas et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B12">Blatrix et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B45">Greenfield et&#xa0;al., 2021</xref>). They are characterized by a reduction in cell wall thickness (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2B, G, M, O</bold>
</xref>) compared to carton-associated fungi and other Chaetothyriales (<xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al., 2011</xref>). There may be little selective pressure on cell wall thickness and melanization within domatia because of reduced exposure to physical stress, particularly drought, heavy rain and high radiation. This is supported by genome analyses of four domatia-associated chaetothyrialean fungi showing that genes coding for enzymes of the cytochrome P450 family (CYPs), membrane transporters, and alcohol dehydrogenases &#x2014; thought to be crucial for survival in extreme and hostile climate conditions &#x2014; revealed contractions in domatia fungi (<xref ref-type="bibr" rid="B80">Moreno et&#xa0;al., 2019</xref>) where the sunlight, temperature and drought are less extreme, but not in the fungi growing on the walls of ant nests (<xref ref-type="bibr" rid="B92">Quan et&#xa0;al., 2022</xref>) where the fungi are exposed to the extreme environmental conditions. In addition, the role of domatia-associated species in the interaction with ants appears to be partly nutritional (<xref ref-type="bibr" rid="B11">Blatrix et&#xa0;al., 2012a</xref>), rather than structural (<xref ref-type="bibr" rid="B31">Dejean et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B95">Ruiz-Gonzalez et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B75">Mayer et&#xa0;al., 2017</xref>) as with carton-associated species (see section 2.1 above). This suggests that ants may have exerted selective pressure for softer hyphae. Another difference to carton-associated strains are the numerous spike-like dark conidiophores (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2G, I, J, M, O</bold>
</xref>) and frequent sporulation (<xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al., 2011</xref>).</p>
<p>The genomes of the domatia-associated fungi are remarkably small compared to those of the nest-wall strains (<xref ref-type="bibr" rid="B92">Quan et&#xa0;al., 2022</xref>) and other Chaetothyriales (<xref ref-type="bibr" rid="B105">Teixeira et&#xa0;al., 2017</xref>), suggesting that at least some domatia-associated species are specialized for this lifestyle.</p>
</sec>
</sec>
<sec id="s3">
<label>3</label>
<title>What traits predispose Chaetothyriales and Capnodiales to form such frequent associations with ants?</title>
<p>Character state analyses based on phylogenies indicate that the ancestral Chaetothyriales were slow-growing colonizers of rock surfaces characterized by extreme oligotrophic conditions, and in these ancestral ecological niches, they had to cope with co-occurring toxin-producing lichens and cyanobacteria (<xref ref-type="bibr" rid="B46">Gueidan et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B94">Quan et&#xa0;al., 2020</xref>). Therefore, extremotolerance (temperature, drought, poor nutrient availability) and toxin resistance are crucial ancestral evolutionary adaptations that subsequently opened a window of opportunity to colonize a surprisingly diverse range of extreme habitats that are unable to support the growth of most other potential competitors (<xref ref-type="bibr" rid="B94">Quan et&#xa0;al., 2020</xref>). As a result, Chaetothyriales may be predisposed to interact with ants because of their tolerance for various toxic chemical compounds (<xref ref-type="bibr" rid="B105">Teixeira et&#xa0;al., 2017</xref>) that are produced by ants for communication (<xref ref-type="bibr" rid="B58">Jackson and Morgan, 1993</xref>) and to control diseases (<xref ref-type="bibr" rid="B119">Yek and Mueller, 2011</xref>). The production of antibiotic and antimycotic substances (e.g. formic and acetic acid, <xref ref-type="bibr" rid="B107">Tragust et&#xa0;al., 2013</xref>) are vital for social insects to ensure health and survival of the colony (<xref ref-type="bibr" rid="B87">Penick et&#xa0;al., 2018</xref>), which in turn requires that associated fungi are resistant to these substances as a pre-requisite to inhabit this niche and to establish mutualisms. It therefore makes sense that Chaetothyriales might produce bioactive substances against competing fungi (<xref ref-type="bibr" rid="B33">El-Elimat et&#xa0;al., 2013</xref>). In addition, Chaetothyriales appear to be pre-adapted to manipulation by specialized ants, as they thrive under constant and frequent mechanical disturbance due to their pronounced ability of regeneration. The combination of these factors may account for the close relationship between ants and those fungi.</p>
<p>Much less is known about the evolutionary and genomic background of ant-associated Capnodiales. However, they seem to occupy somewhat different niches than the Chaetothyriales, as in different ant-plant fungal systems either the Chaetothyriales or the Capnodiales are dominant. The Capnodiales <italic>sensu lato</italic> represent a morphologically and ecologically highly diverse and speciose lineage with different lifestyles and modes of nutrition, viz. saprobes, plant and human pathogens, mycoparasites, rock-inhabiting fungi, lichenized, epi-, ecto- and endophytes (<xref ref-type="bibr" rid="B2">Abdollahzadeh et&#xa0;al., 2020</xref>). Several families of the former Capnodiales <italic>sensu lato</italic> were recently elevated to distinct orders (<xref ref-type="bibr" rid="B2">Abdollahzadeh et&#xa0;al., 2020</xref>). As a result, Capnodiales <italic>sensu stricto</italic> were restricted to the sooty molds which colonize plant surfaces covered by sugar-rich honeydew excreted by sap-sucking hemiptera (<xref ref-type="bibr" rid="B2">Abdollahzadeh et&#xa0;al., 2020</xref>). <xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al. (2011)</xref> observed that Capnodiales were prominent particularly in &#x201c;carton&#x201d; of <italic>Crematogaster</italic> ants, which differed markedly from other ant nests by extremely hard, dense and tough texture, with the fungi only growing on the carton surface. Considering the close association of ants with hemiptera which are tended by the ants in return for carbohydrates, honeydew-inhabiting Capnodiales may be predestined to colonize suitable surfaces within ant nests, if carbohydrates are accidentally or intentionally deposited on them. However, additional investigations are needed to ascertain the nutritional requirements of these Capnodiales isolates.</p>
</sec>
<sec id="s4">
<label>4</label>
<title>From plant surface to ant nests? Evolution of ant-associated Chaetothyriales</title>
<p>As phylogenetic analyses of ant-associated Capnodiales are not available to date, only Chaetothyriales are considered here. Interestingly, the phylogenetic analyses suggest that the strains of the two functional groups exhibit distinct evolutionary patterns. Within Chaetothyriales, species associated with nest-walls and galleries (functional group 1) appear more scattered in the phylogeny compared to species associated with ants living in domatia (functional group 2) (<xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B85">Nepel et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B108">Vasse et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B94">Quan et&#xa0;al., 2020</xref>). Chaetothyriales of the first group belong to Trichomeriaceae, Herpotrichiellaceae and Cyphellophoraceae and are particularly well represented in the families Trichomeriaceae and Herpotrichiellaceae. This pattern suggests that life as mutualists of ant-made carton evolved multiple times independently, even across different orders. It is not clear whether these species are ant specialists, or if they are opportunistic fungi that primarily live in other environments but are specifically recruited by the ants, or if at least some of them are commensals that arrived without any relation to ants.</p>
<p>In contrast, most domatia-associated Chaetothyriales cluster close to Cyphellophoraceae and Paracladophialophoraceae (<xref ref-type="bibr" rid="B93">Quan et&#xa0;al., 2023</xref>) in a monophyletic clade that is composed of domatia-associated species only (&#x201c;domatia symbiont clade&#x201d;) and that could potentially constitute a distinct family (<xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B108">Vasse et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B94">Quan et&#xa0;al., 2020</xref>). The substantial genome (and gene) reduction reported for species in the domatia symbiont clade (<xref ref-type="bibr" rid="B80">Moreno et&#xa0;al., 2019</xref>) suggests a long evolutionary specialization. However, there are also several species of domatia-associated Chaetothyriales that do not belong to the monophyletic main clade but are scattered throughout the phylogeny (<xref ref-type="bibr" rid="B108">Vasse et&#xa0;al., 2017</xref>). This may indicate that the ant-associated lifestyle evolved several times. Alternatively, the association with mutualistic ant-plant interactions may be an optional, opportunistic strategy. One example of the latter is <italic>Exophiala oligosperma</italic>, which is known to be a human pathogen found in low-nutrient substrates (<xref ref-type="bibr" rid="B29">De Hoog et&#xa0;al., 2003</xref>), and has recently been discovered in ant-occupied domatia of various ant-plants in South-East Asia, and Central and South America (<xref ref-type="bibr" rid="B108">Vasse et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B12">Blatrix et&#xa0;al., 2021</xref>). In addition, several ant-plant mutualisms on different continents have been found to share a single species of Chaetothyriales, showing the ability of such species to change hosts and continents (<xref ref-type="bibr" rid="B84">Nepel et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B108">Vasse et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B12">Blatrix et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B45">Greenfield et&#xa0;al., 2021</xref>). In summary, the evolutionary pattern of domatia-associated Chaetothyriales seems to involve one main radiation possibly linked to specialization on the one hand, and opportunistic nonspecific associations on the other hand. The opportunistic strains isolated from the ant nest environment may not all be involved in interaction with ants.</p>
<p>The phylogenetic patterns of ant-plants and plant-ants are markedly different, as myrmecophytism (i.e. bearing domatia) in plants is distributed throughout the plant phylogeny, with at least 158 independent evolutionary origins, each occurring less than 20 Mya ago (<xref ref-type="bibr" rid="B20">Chomicki and Renner, 2015</xref>). In ants the obligate association with myrmecophytes has evolved many times independently, but with three times fewer origins than in the ant-plants (<xref ref-type="bibr" rid="B20">Chomicki and Renner, 2015</xref>). Co-diversification between plants and ants seems not to be a driver in the evolution of ant-plant mutualisms. According to the latest phylogenetic reconstruction, the monophyletic clade containing most of the domatia-inhabiting Chaetothyriales evolved at least 27 Mya ago (<xref ref-type="bibr" rid="B94">Quan et&#xa0;al., 2020</xref>), that is, earlier than any of the extant lineages of myrmecophytes (<xref ref-type="bibr" rid="B20">Chomicki and Renner, 2015</xref>). Two non-exclusive hypotheses, outlined in the following two paragraphs, are proposed to explain how the contemporary associations might have developed despite the distinct evolutionary history of domatia fungi and myrmecophytic plant lineages.</p>
<p>The first hypothesis suggests, that myrmecophytism may have existed much earlier than the recent plant lineages. The development of a domatium is most likely an evolutionarily labile trait that is easily acquired and lost for the following reasons: (i) it has been independently acquired at least 158 times and lost at least 43 times (<xref ref-type="bibr" rid="B20">Chomicki and Renner, 2015</xref>), (ii) there are no known plant fossils with domatia, and (iii) in some species, this trait is highly variable (<xref ref-type="bibr" rid="B78">Michelangeli, 2005</xref>; <xref ref-type="bibr" rid="B103">Shenoy and Borges, 2010</xref>;, <xref ref-type="bibr" rid="B63">Kokolo et&#xa0;al., 2020</xref>). Consequently, although the extant lineages of myrmecophytes are less than 20 Mya old, myrmecophytism may have existed much earlier but without leaving any detectable evidence. If a more than 27 Mya old specialized clade of domatia-associated Chaetothyriales exists, as suggested by the most recent dated phylogeny (<xref ref-type="bibr" rid="B94">Quan et&#xa0;al., 2020</xref>), it could have originated from myrmecophytic plant lineages that are now extinct. The adaptation to ant-inhabited domatia as habitat could have been maintained through host-switching or opportunistic life style outside domatia, both of which are strategies that do not seem to be rare in extant species (see previous paragraphs).</p>
<p>The second hypothesis suggests, that fungi associated with ants may have originated from epiphyllous species. In the current state of knowledge, most ant-associated melanized fungi in the tropics interact with arboreal ants. It is noteworthy that the clade of domatia-associated Chaetothyriales is sister to a pair of species known to be epiphyllous (i.e. living on the surface of tree leaves). In addition, the closest relatives of these clades are the families Cyphellophoraceae and Phaeosaccardinulaceae, mostly composed of plant-associated species (<xref ref-type="bibr" rid="B94">Quan et&#xa0;al., 2020</xref>). Domatia species also occur in Cyphellophoraceae, but also in Herpotrichiellaceae and Trichomeriaceae which have many epiphyllous ones (<xref ref-type="bibr" rid="B94">Quan et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B93">Quan et&#xa0;al., 2023</xref>). The scraping of leaf surfaces by arboreal ants &#x2014; most probably to collect epiphylls for larval feeding, as observed today (<xref ref-type="bibr" rid="B25">Davidson et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B26">Davidson et&#xa0;al., 2016</xref>) &#x2014; may have provided many opportunities over time for epiphyllous Chaetothyriales and Capnodiales to adapt and colonize in the environment of newly emerging domatia, where their tolerance to different chemical compounds would give them an advantage over competitors. However, <xref ref-type="bibr" rid="B5">Baker et&#xa0;al. (2017)</xref> found a marked difference between the fungal community in the domatia of African <italic>Vachellia drepanolobium</italic> and the one on the surface of leaves of the same plants. A comprehensive study of the epiphyllous melanized fungi would probably substantially improve our understanding of the evolution of the ant-plant associated species.</p>
<p>Similarly, most carton-associated Chaetothyriales from the family Trichomeriaceae are embedded in a clade of epiphyllous species, and Capnodiales are known to be epiphyllous and colonizers of honeydew on leaf surfaces (<xref ref-type="bibr" rid="B2">Abdollahzadeh et&#xa0;al., 2020</xref>).</p>
</sec>
<sec id="s5">
<label>5</label>
<title>Specificity and transmission</title>
<sec id="s5_1">
<label>5.1</label>
<title>Various degrees of specificity in ant-associated fungi</title>
<p>The degree of specificity between ants and fungi depends on the taxonomic level and differs between the fungi involved. At the species level, some fungal strains isolated from galleries made of carton walls or domatia are ubiquitous and not specific to either the ant or the plant species (e.g., <xref ref-type="bibr" rid="B84">Nepel et&#xa0;al., 2016</xref>), whereas other strains have been found to show a high degree of ant-host specificity (e.g., <xref ref-type="bibr" rid="B95">Ruiz-Gonzalez et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B10">Blatrix et&#xa0;al., 2013</xref>).</p>
</sec>
<sec id="s5_2">
<label>5.1.1</label>
<title>Examples for low specificity in ant-associated fungi</title>
<p>
<italic>Azteca brevis</italic> ants living on <italic>Tetrathylacium macrophyllum</italic> build galleries that form paths with carton sidewalls and a roof, allowing them to move quickly and safe along branches and stems (= runway-galleries) (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1I-L</bold>
</xref>). <xref ref-type="bibr" rid="B77">Mayer and Voglmayr (2009)</xref> found a complex association of fungal species belonging to the Chaetothyriales order. Specifically, <xref ref-type="bibr" rid="B85">Nepel et&#xa0;al. (2014)</xref> found 62 different &#x201c;Operative Taxonomic Units&#x201d; (OTUs), the most common OTU was represented in 63% of the investigated trees. <italic>Azteca brevis</italic> does not seem to strongly select for a particular morphological type; this ant species cultivates and uses many different kinds of Chaetothyriales, suggesting a low specificity that could result from an environmental acquisition of fungal strains able to grow on such carton galleries (<xref ref-type="bibr" rid="B77">Mayer and Voglmayr, 2009</xref>).</p>
<p>The African ant-plant <italic>Vachellia</italic> (<italic>Acacia</italic>) <italic>drepanolobium</italic> is associated with three main obligate plant-ants: <italic>Tetraponera penzigi</italic>, <italic>Crematogaster nigriceps</italic> and <italic>C. mimosae</italic>. <xref ref-type="bibr" rid="B5">Baker et&#xa0;al. (2017)</xref> found that each of these ants is associated with a distinctive fungal community inside the domatia. Most of the fungi were plant pathogens or saprotrophs whose presence in a natural plant environment is quite plausible, suggesting that these ant-fungal associations are opportunistic. Chaetothyriales fungi were also not prominent in this association.</p>
<p>In the interaction between <italic>Crematogaster borneensis</italic> and <italic>Macaranga bancana</italic>, <xref ref-type="bibr" rid="B54">Hirose et&#xa0;al. (2013)</xref> found 15 OTUs, none of which were from the order Chaetothyriales. In contrast, <xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al. (2011)</xref> previously isolated a single representative of this fungal order in the same system, which belonged to the monophyletic clade of domatia inhabiting Chaetothyriales. These contrasting observations are likely the result of the use of different isolation methods to get fungal cultures: while <xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al. (2011)</xref> isolated the fungi directly from fungal &#x201c;patches&#x201d; of freshly opened domatia still inhabited by ant colonies, the method of <xref ref-type="bibr" rid="B54">Hirose et&#xa0;al. (2013)</xref> was rather unspecific, including a three week incubation step of the cut domatia before isolation of pure cultures from hyphae. <xref ref-type="bibr" rid="B45">Greenfield et&#xa0;al. (2021)</xref> identified fungal OTUs from the orders Chaetothyriales and Capnodiales, but also from other fungal orders in the interaction between <italic>Philidris cordata</italic> and <italic>Myrmecodia beccarii</italic>. In terms of the overall proportion of OTUs, Chaetothyriales were the dominant domatia inhabiting fungi. Within the pitcher leaves of <italic>Dischidia major</italic> occupied by <italic>Philidris</italic> sp. ants <xref ref-type="bibr" rid="B12">Blatrix et&#xa0;al. (2021)</xref> found nine species of Black Fungi belonging to Chaetothyriales (5) and Capnodiales (4), among which two have already been isolated from ant-plant mutualisms in Africa and South America. Many fungal associates are likely pantropical ant-plant associated species.</p>
</sec>
<sec id="s5_3">
<label>5.1.2</label>
<title>Examples for high specificity</title>
<p>High specificity in ant-plant-fungi interactions occurs in a wide diversity of systems. In these interactions, typically only a few strains of Chaetothyriales comprise the fungal mutualists, either in galleries built by the ants or in fungal patches within domatia.</p>
<p>Ants from the genus <italic>Allomerus</italic> build galleries along their host plant stems that are structurally similar to the ones built by <italic>A. brevis</italic> (<xref ref-type="bibr" rid="B75">Mayer et&#xa0;al., 2017</xref>) and used to ambush for prey (<xref ref-type="bibr" rid="B31">Dejean et&#xa0;al., 2005</xref>) (<xref ref-type="fig" rid="f1">
<bold>Figures&#xa0;1M-O</bold>
</xref>). In contrast to <italic>A. brevis</italic> ants, which have a guild of different Chaetothyriales in their galleries (<xref ref-type="bibr" rid="B85">Nepel et&#xa0;al., 2014</xref>) (see also 5.1.1), the three <italic>Allomerus</italic> species studied so far appear to be mainly associated with a single fungal species of Chaetothyriales, <italic>Trimmatostroma cordae</italic> (<xref ref-type="bibr" rid="B95">Ruiz-Gonzalez et&#xa0;al., 2011</xref>).</p>
<p>Ant species-specific fungal strains in domatia are known from the African ant-plant interactions <italic>Petalomyrmex phylax</italic> &#x2013; <italic>Leonardoxa africana</italic> subsp. <italic>africana</italic>, <italic>Tetraponera aethiops</italic> &#x2013; <italic>Barteria fistulosa</italic> (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2A, B</bold>
</xref>), <italic>T. latifrons</italic> &#x2013; <italic>B. dewevrei</italic> and <italic>Crematogaster margaritae</italic> &#x2013; <italic>Keetia hispida</italic> (<xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B10">Blatrix et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B62">Kokolo et&#xa0;al., 2016</xref>). <xref ref-type="bibr" rid="B10">Blatrix et&#xa0;al. (2013)</xref> detected that 98% of the fungal taxa in these ant-plant interactions belong to the Chaetothyriales. Each ant-plant interaction was associated with a specific and dominant fungal taxon, indicating a high specificity and constancy in the composition of the fungal community. In one study site, the interactions involving <italic>T. aethiops</italic> &#x2013; <italic>B. fistulosa</italic> and <italic>T. latifrons</italic> &#x2013; <italic>B. dewevrei</italic> were preferentially associated with two sister OTUs of Chaetothyriales fungi, namely Y1 and Y9, respectively (<xref ref-type="bibr" rid="B62">Kokolo et&#xa0;al., 2016</xref>). In another site, these authors found that both fungal strains Y1 and Y9 were equally represented in the <italic>T. aethiops</italic> &#x2013; <italic>B. fistulosa</italic> interaction.</p>
<p>Furthermore, in the Central American <italic>Azteca</italic> &#x2013; <italic>Cecropia</italic> ant-plant association, <xref ref-type="bibr" rid="B84">Nepel et&#xa0;al. (2016)</xref> found a total of six fungal OTUs belonging to chaetothyrialean fungi when investigating the dark ant-made patches in the hollow stems of all <italic>Cecropia</italic> plants inhabited by <italic>Azteca</italic> ants (<italic>A. alfari</italic>, <italic>A. coeruleipennis</italic>, <italic>A. constructor</italic>, <italic>A. xanthochroa</italic>) (<xref ref-type="fig" rid="f2">
<bold>Figures&#xa0;2E-J</bold>
</xref>). One fungal OTU, OTU2, was preferred by <italic>Azteca alfari</italic> and was consistently found with this ant species. In contrast, the other three <italic>Azteca</italic> species were more frequently found with multiple OTUs often even in the same colony, and often OTUs different from the OTU associated with <italic>A. alfari</italic>. In addition, the finding that <italic>A. alfari</italic> colonies from three different geographic regions cultivated fungi of OTU2 while <italic>A. constructor</italic> predominantly cultivated fungi of OTU3, indicates a certain level of specificity at least for these two species (<xref ref-type="bibr" rid="B84">Nepel et&#xa0;al., 2016</xref>).</p>
</sec>
<sec id="s5_4">
<label>5.2</label>
<title>Mode of transmission</title>
<sec id="s5_4_1">
<label>5.2.1</label>
<title>Vertical transmission</title>
<p>The acquisition and eventual transmission of fungal partners across generations has not been investigated in detail thus far. Nevertheless, insights can be drawn from existing information. Fungi are absent from myrmecophytic plants that have not been colonized by ants (<xref ref-type="bibr" rid="B27">Defossez et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B95">Ruiz-Gonzalez et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B76">Mayer et&#xa0;al., 2018</xref>). But soon after the colonization by founding queens they are present (<xref ref-type="bibr" rid="B76">Mayer et&#xa0;al., 2018</xref>) which indicates that the inoculation comes <italic>via</italic> the ants, and not from the plant tissue. Vertical transmission of associated fungi (i.e., direct transmission from mother to daughter colony) is common in insect-fungus mutualisms (<xref ref-type="bibr" rid="B7">Biedermann and Vega, 2020</xref>). This mode of transmission is known from attine ants (<xref ref-type="bibr" rid="B18">Chapela et&#xa0;al., 1994</xref>; <xref ref-type="bibr" rid="B81">Mueller et&#xa0;al., 1998</xref>) and has also been suggested for <italic>Lasius fuliginosus</italic> ants which cultivate fungi on their nest walls (<xref ref-type="bibr" rid="B98">Schlick-Steiner et&#xa0;al., 2008</xref>). Such a transmission mode ensures that the right partners get involved in the next generation of mutualism. In ant-plant mutualisms, vertical transmission of the associated fungi is strongly suspected for the following reasons:</p>
<list list-type="simple">
<list-item>
<p>- The occurrence of a single fungal species (<italic>Trimmatostroma cordae</italic>) on the galleries of all three <italic>Allomerus</italic> spp. argues for a specific association between the <italic>Allomerus</italic> ants and the fungus, and thus towards host specificity (<xref ref-type="bibr" rid="B95">Ruiz-Gonzalez et&#xa0;al., 2011</xref>).</p>
</list-item>
<list-item>
<p>- Fungi from the so-called &#x201c;domatia symbiont clade&#x201d; of the Chaetothyriales have only been found in domatia of myrmecophytes inhabited by mutualistic ants and are not yet known from any other substrate (<xref ref-type="bibr" rid="B76">Mayer et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B96">Ruiz-Gonz&#xe1;lez et&#xa0;al., 2019</xref>). Notably, there is no overlap with the fungi growing on the carton galleries of <italic>Azteca brevis</italic>, which contain a high species biodiversity of fungi from three different clades within the Chaetothyriales, but not from the so-called &#x201c;domatia symbiont clade&#x201d; (<xref ref-type="bibr" rid="B77">Mayer and Voglmayr, 2009</xref>; <xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B84">Nepel et&#xa0;al., 2016</xref>).</p>
</list-item>
<list-item>
<p>- The presence of a single Chaetothyriales OTU in <italic>Cecropia</italic> trees inhabited by <italic>Azteca alfari</italic> in different geographical regions suggests mother to daughter transmission rather than a random contamination of alate queens from the environment (<xref ref-type="bibr" rid="B84">Nepel et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B76">Mayer et&#xa0;al., 2018</xref>). If multiple &#x201c;domatia symbiont&#x201d; OTUs occur in a single colony, this may be related to the cooperative multi-queen colony founding (pleometrosis) which has been observed in some ant-plant mutualisms (e.g. in <italic>Triplaris</italic> &#x2013; <italic>Pseudomyrmex</italic> and <italic>Cecropia</italic> &#x2013; <italic>Azteca</italic>; <xref ref-type="bibr" rid="B88">Perlman, 1992</xref>; <xref ref-type="bibr" rid="B19">Choe and Perlman, 1997</xref>; <xref ref-type="bibr" rid="B97">Sanchez, 2016</xref>; <xref ref-type="bibr" rid="B76">Mayer et&#xa0;al., 2018</xref>). Queens of the same ant species or with mixed species, each with its own infrabuccal pocket content, are together in a single domatium taking care of the initial patch and the first eggs (<xref ref-type="bibr" rid="B76">Mayer et&#xa0;al., 2018</xref>). However, colonies with &gt;100 workers are usually single-queen colonies, and co-foundresses have been found cut into pieces within the patch material (<xref ref-type="bibr" rid="B88">Perlman, 1992</xref>; <xref ref-type="bibr" rid="B19">Choe and Perlman, 1997</xref>; <xref ref-type="bibr" rid="B97">Sanchez, 2016</xref>; <xref ref-type="bibr" rid="B76">Mayer et&#xa0;al., 2018</xref>). For <italic>Cecropia</italic>, it has also been observed that unless there is &gt;1 queen on an internode, young plants usually have several internodes occupied by individual queens founding their own colony (<xref ref-type="bibr" rid="B76">Mayer et&#xa0;al., 2018</xref>). Once the dominant colony has conquered the entire host plant, a higher OTU diversity also occurs.</p>
</list-item>
<list-item>
<p>- The presence of hyphae and fungal spores in the infrabuccal pockets of alate queens point toward fungal dispersion between host myrmecophytes and inoculation of the domatia with fungal pellet material brought from the fungiculture of their mother colonies (<xref ref-type="bibr" rid="B5">Baker et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B76">Mayer et&#xa0;al., 2018</xref>). <xref ref-type="bibr" rid="B76">Mayer et&#xa0;al. (2018)</xref> were unable to generate DNA sequences from the infrabuccal pockets, so it was uncertain whether the hyphae and spores found are truly those that occur in the domatia fungal community. However, eggs and larval stages of nematodes of the order Rhabditidae were also detected in the infrabuccal pockets. but are never observed on the surface of the area where the ants chew the entrance hole to the hollow stem of their host plant (=prostoma) (<xref ref-type="bibr" rid="B71">Maschwitz et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B76">Mayer et&#xa0;al., 2018</xref>). Therefore, it is highly probable that the foundress queens take a piece of the fungal culture before leaving the nest for swarming. <xref ref-type="bibr" rid="B5">Baker et&#xa0;al. (2017)</xref> found that a substantial fraction of the fungal sequences from <italic>V. drepanolobium</italic> domatia was recovered from <italic>T. penzigi</italic> and <italic>C. nigriceps</italic> alates but infrabuccal pockets samples also contained fungi that were not found from domatium samples. This may reflect either variation among host plants not captured by the sampling design, or that alates acquire fungi from sources other than the domatia of their mother colony (<xref ref-type="bibr" rid="B5">Baker et&#xa0;al., 2017</xref>).</p>
</list-item>
</list>
</sec>
<sec id="s5_4_2">
<label>5.2.2</label>
<title>Horizontal transmission</title>
<p>Some fungal strains isolated from galleries or domatia are ubiquitous and seem not to be specific to the ant species pointing towards an environmental acquisition (<xref ref-type="bibr" rid="B54">Hirose et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B85">Nepel et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B84">Nepel et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B108">Vasse et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B45">Greenfield et&#xa0;al., 2021</xref>). Ant workers can bring spores or hyphal fragments from the environment into the nest by collecting pieces of soil and various organic debris from the ground or the canopy as has been highlighted in other interactions (<xref ref-type="bibr" rid="B1">Abbott, 2002</xref>; <xref ref-type="bibr" rid="B66">Leroy et&#xa0;al., 2022</xref>). <italic>De novo</italic> acquisition of fungal species from the environment at each ant generation would explain the high number of genotypes and OTUs in domatia that do not cluster in the domatia symbiont clade (<xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B108">Vasse et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B45">Greenfield et&#xa0;al., 2021</xref>). Nest wall carton and galleries that are exposed to the environment can be colonized by spores from fungi that can use the substrate and cope with the ants&#x2019; chemistry (see 6.4). For example, the community of Chaetothyriales fungi on the carton galleries built by <italic>A. brevis</italic> may be a subset of the fungal community found on the surface of the host plant (<xref ref-type="bibr" rid="B85">Nepel et&#xa0;al., 2014</xref>). It is likely that many of these strains are opportunistic and not mutualists, or even parasitic.</p>
</sec>
</sec>
</sec>
<sec id="s6">
<label>6</label>
<title>Where are we in the understanding of the roles of the associated fungi?</title>
<sec id="s6_1">
<label>6.1</label>
<title>Reinforcement and stability of ant constructions</title>
<p>Fungi found on the nest walls of free-hanging nests, runway galleries or &#x201c;carton&#x201d; structures surrounding domatia entrances, or flocks of scale insects, increase the stability of nest walls and gallery structures through a dense network of interwoven and overlapping hyphae of thick-walled melanized Chaetothyriales and Capnodiales. While freshly built walls without fungi are unstable and easily disintegrate when touched, walls covered with the fungal network are very stable and particularly flexible when wet (<xref ref-type="bibr" rid="B116">Wei&#xdf;flog, 2001</xref>; <xref ref-type="bibr" rid="B77">Mayer and Voglmayr, 2009</xref>; <xref ref-type="bibr" rid="B110">Vogel, 2012</xref>). Rhizoids attach the hyphae to the host plant branches or stems, thus firmly connecting the ant nest walls to the substrate (<xref ref-type="bibr" rid="B116">Wei&#xdf;flog, 2001</xref>). This enhances the nest architecture and allows the development of unique defence and prey capture techniques, as documented in the associations between the two <italic>Allomerus</italic> species and <italic>Hirtella physophora</italic>, and <italic>Tetrathylacium macrophyllum &#x2013; Azteca brevis</italic> (<xref ref-type="bibr" rid="B31">Dejean et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B77">Mayer and Voglmayr, 2009</xref>; <xref ref-type="bibr" rid="B75">Mayer et&#xa0;al., 2017</xref>). Furthermore, the fungal network quickly absorbs water, protecting the nest interior from being flooded during heavy rains common in the tropics, while also appearing to be drought tolerant (poikilohydric) and can sustain periods of low water availability (<xref ref-type="bibr" rid="B116">Wei&#xdf;flog, 2001</xref>; <xref ref-type="bibr" rid="B77">Mayer and Voglmayr, 2009</xref>; <xref ref-type="bibr" rid="B110">Vogel, 2012</xref>).</p>
<p>While building their runway galleries, <italic>Allomerus</italic> workers were observed gluing pellets from scraped epidermis and mesophyll of the inner domatia walls onto the gallery frame built from trichomes of the host plant (<xref ref-type="bibr" rid="B95">Ruiz-Gonzalez et&#xa0;al., 2011</xref>). Video recordings by <xref ref-type="bibr" rid="B116">Wei&#xdf;flog (2001)</xref> of Southeast Asian <italic>Technomyrmex</italic> sp. and <italic>Monomorium</italic> sp. during construction showed that the workers were continuously applying droplets of rectal fluid to the building material and to newly constructed parts. This suggests a purposeful substrate preparation to enhance fungal growth and increase the construction stability.</p>
</sec>
<sec id="s6_2">
<label>6.2</label>
<title>Food for the offspring</title>
<p>It has been suggested for a long time that the fungi found on ant-built structures and in domatia are consumed by the ants (<xref ref-type="bibr" rid="B79">Miehe, 1911</xref>; <xref ref-type="bibr" rid="B4">Bailey, 1920</xref>). However, experiments involving <italic>Technomyrmex</italic> workers kept with nest wall fungi (<xref ref-type="bibr" rid="B116">Wei&#xdf;flog, 2001</xref>) did not provide evidence of feeding on hyphal fragments. This is not surprising for nest wall fungi, which have thick, melanized walls, making them an unlikely digestible food source. In contrast, since domatia fungi have thin, hyaline walls (<xref ref-type="bibr" rid="B111">Voglmayr et&#xa0;al., 2011</xref>), and as fungi are nutritious and consumed as a food source by many insects (<xref ref-type="bibr" rid="B7">Biedermann and Vega, 2020</xref>), it is obvious to assume that they could also be consumed by plant-ants. <xref ref-type="bibr" rid="B11">Blatrix et&#xa0;al. (2012a)</xref> showed for three other ant-plant associations (<italic>Petalomyrmex phylax</italic> - <italic>Leonardoxa africana</italic>, <italic>Tetraponera aethiops</italic> - <italic>Barteria fistulosa</italic>, <italic>Pseudomyrmex penetrator</italic> - <italic>Tachigali</italic> sp.) that chaetothyrialean fungi are used as a food source for larvae, although not consumed daily. The extent to which myrmecophytic ants depend on fungi for food is unknown, but the major food sources may be from the host plant. The ants can feed directly, and even exclusively, on plant-derived food in the form of extrafloral nectar rich in carbohydrates, or food bodies rich in proteins (<xref ref-type="bibr" rid="B53">Heil et&#xa0;al., 1998</xref>), lipids (<xref ref-type="bibr" rid="B36">Fischer et&#xa0;al., 2002</xref>) or both (<xref ref-type="bibr" rid="B38">Folgarait and Davidson, 1995</xref>), or phyto-glycogen (<xref ref-type="bibr" rid="B8">Bischof et&#xa0;al., 2013</xref>). Most plant-ants also tend Hemiptera inside domatia for the carbohydrate-rich honeydew and for &#x2018;meat&#x2019; as source of protein or lipids (<xref ref-type="bibr" rid="B117">Wheeler, 1942</xref>; <xref ref-type="bibr" rid="B17">Carroll and Janzen, 1973</xref>; <xref ref-type="bibr" rid="B47">Gullan, 1997</xref>; <xref ref-type="bibr" rid="B32">Dill et&#xa0;al., 2002</xref>). If the plant is not providing food sources, the diet is mainly based on prey. Fungi may be necessary as a food source, if they provide micronutrients unavailable from other sources, if the ant population grows faster than the food provided by the plant due to factors such as drought, lack of light or poor soil conditions, or if there are no coccids inside the domatia to supplement nitrogen-poor extrafloral nectar.</p>
</sec>
<sec id="s6_3">
<label>6.3</label>
<title>Recycling of macromolecules and indirect/direct transfer of N to the plant tissue</title>
<p>One potential function of the fungal patches appears to be the recycling and storage of nutrients. Ants feed the fungal mutualist with their faeces and provide hyphae to their larvae, suggesting a recycling role of the fungus (<xref ref-type="bibr" rid="B11">Blatrix et&#xa0;al., 2012a</xref>; <xref ref-type="bibr" rid="B28">Defossez et&#xa0;al., 2011</xref>). Additionally, the patch is enriched with nitrogen from its atmospheric nitrogen-fixing bacteria (<xref ref-type="bibr" rid="B83">Nepel et&#xa0;al., 2022</xref>), which further minimises the dependence on nitrogen from outside the ant-plant system. Nitrogen (N) &#x2013; one the major elements for animal growth &#x2013; is often in short supply for tropical arboreal ants (<xref ref-type="bibr" rid="B106">Tobin et&#xa0;al., 1995</xref>; <xref ref-type="bibr" rid="B25">Davidson et&#xa0;al., 2003</xref>). This also applies to phosphorous (P), which has been shown to play an important role in the ants&#x2019; ability to cope with thermal stress in the hot canopy (<xref ref-type="bibr" rid="B59">Kaspari et&#xa0;al., 2016</xref>). The recycling of macronutrients within the ant-plant system may be very important, especially for ants that feed on N-poor diets such as extrafloral nectar, plant secretions, or honeydew from scale insects.</p>
<p>Another function, only recently discovered, is the transfer of nutrients into the host plant tissue. <xref ref-type="bibr" rid="B43">Leroy et&#xa0;al. (2017)</xref> and <xref ref-type="bibr" rid="B42">Gegenbauer et&#xa0;al. (2023)</xref> identified hyphae inside stem tissues and revealed that the fungi actively transfer nitrogen into the plant tissues. In the orchid <italic>Caularthron bilamellatum</italic> it was demonstrated that hyphae assigned to Black Fungi (Chaetothyriales, Cladosporiales, Mycosphaerellales) rapidly transport nutrients from ant waste to a transition zone where it can be taken up and translocated to the vessels (<xref ref-type="bibr" rid="B43">Gegenbauer et&#xa0;al., 2012</xref>). <xref ref-type="bibr" rid="B28">Defossez et&#xa0;al. (2011)</xref> showed that part of the nitrogen introduced in <italic>Petalomyrmex</italic> - <italic>Leonardoxa</italic> was cycling in the system and there were reciprocal exchanges of nitrogen among the three partners. More detailed examination of the specialization in ant-plant interactions and nutritional fluxes among all partners might provide additional clues on the degree of specificity of fungal association.</p>
</sec>
<sec id="s6_4">
<label>6.4</label>
<title>Biofilter and nest hygiene</title>
<p>To protect their colony, ants regularly disinfect their nest and brood with a variety of antimicrobial substances (<xref ref-type="bibr" rid="B107">Tragust et&#xa0;al., 2013</xref>). Taken together, over 40 anatomically distinct exocrine glands are present on ants&#x2019; bodies and legs (<xref ref-type="bibr" rid="B55">H&#xf6;lldobler and Wilson, 1990</xref>), which produce a huge variety of chemical compounds that ants use to organize the colony and protect the brood and adult nest members against pathogens (<xref ref-type="bibr" rid="B3">Attygalle and Morgan, 1984</xref>; <xref ref-type="bibr" rid="B55">H&#xf6;lldobler and Wilson, 1990</xref>; <xref ref-type="bibr" rid="B112">Wang et&#xa0;al., 2015a</xref>). All organisms within ant nests are not only exposed to these chemicals, they are also exposed to plant-emitted substances. Plants themselves produce volatile organic compounds (VOCs) from various chemical classes, such as terpenoids, benzenoids and phenylpropanoids, as well as fatty acid-derived molecules or sulfides for communication with the organisms in their environment (<xref ref-type="bibr" rid="B15">Bouwmeester et&#xa0;al., 2019</xref>), in response to herbivory, and during normal plant growth, development and maintenance (<xref ref-type="bibr" rid="B23">Dani and Loreto, 2022</xref>). Some of the plant- and ant-emitted VOCs, such as benzothiazole, carbon disulphide, acetaldehyde, <italic>p</italic>-cymene, D-limonene (<xref ref-type="bibr" rid="B56">Hubert et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B109">Verza et&#xa0;al., 2011</xref>), are known to have insecticidal properties, and the accumulation of these chemicals could be deleterious to the vulnerable larval stage of the ants.</p>
<p>The concentration of VOCs was measured for the first time in the <italic>Azteca</italic>/<italic>Cecropia</italic> association. Surprisingly, the concentrations of most aldehydes, aromatic compounds, sulphur-containing compounds, and terpenes were, on average, higher in uninhabited domatia than inhabited ones. This was despite the fact that entrance holes of the inhabited domatia where the VOCs were measured were too small for efficient ventilation (<xref ref-type="bibr" rid="B73">Mayer et&#xa0;al., 2021</xref>). As several studies have demonstrated the ability of Chaetothyriales to degrade hydrocarbons (<xref ref-type="bibr" rid="B57">Isola et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B90">Prenafeta-Bold&#xfa; et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B6">Baron et&#xa0;al., 2021</xref>), the authors suggest that the melanized fungi growing in the domatia may be partly responsible for the reduced VOC concentrations (<xref ref-type="bibr" rid="B73">Mayer et&#xa0;al., 2021</xref>). However, confirmatory experiments are still needed to clarify whether the VOCs are harmful to the larvae and whether Chaetothyriales in the domatia bind and degrade some of the VOCs. Another yet unexplored function of Black Fungi may be a possible contribution to domatia hygiene. In contrast to carton and other Chaetothyriales, domatia-associated Chaetothyriales show a remarkable increase of gene clusters related to secondary metabolism, such as modular polyketide synthases (type-I PKS) and non-ribosomal peptide synthetases (NRPSs) (<xref ref-type="bibr" rid="B80">Moreno et&#xa0;al., 2019</xref>). These are known to be involved in the synthesis of some of the most important antibiotics and anti-parasitics (<xref ref-type="bibr" rid="B35">Fischbach and Walsh, 2006</xref>; <xref ref-type="bibr" rid="B104">S&#xfc;ssmuth and Mainz, 2017</xref>), and their increase points to a specific function. However, confirmatory experiments are still needed to clarify whether Black Fungi in the domatia bind and degrade detrimental VOCs, and whether they produce antibiotics that act in the suppression of pathogens in the domatia.</p>
</sec>
</sec>
<sec id="s7">
<label>7</label>
<title>Who are the fungi associated with?</title>
<p>Are the fungi more dependent on ants or plants species, or both? Globally, the presence of fungi in ant-plant interactions appears to depend more on the ants than on the plants. In <italic>Azteca</italic> &#x2013; <italic>Cecropia</italic> associations, the identity of the associated fungi was not dependent on the host plant species but on the associated ant species (<xref ref-type="bibr" rid="B84">Nepel et&#xa0;al., 2016</xref>). Similarly, when <italic>Cordia nodosa</italic> is inhabited by <italic>Azteca</italic> sp. cf. <italic>depilis</italic>, a mutualist that does not build galleries on the plant like <italic>A. octoarticulatus</italic> does, no Chaetothyriales have been found (<xref ref-type="bibr" rid="B96">Ruiz-Gonz&#xe1;lez et&#xa0;al., 2019</xref>). Instead, two fungal strains, from Pleosporales and from Trichosporales, have been identified in the associations involving <italic>Azteca</italic> sp. cf. <italic>depilis</italic> but not if inhabited by <italic>Allomerus</italic> spp. (<xref ref-type="bibr" rid="B96">Ruiz-Gonz&#xe1;lez et&#xa0;al., 2019</xref>). Also in <italic>Barteria dewevrei</italic> we find this phenomenon: Chaetothyriales could only be isolated when inhabited by the mutualists <italic>Tetraponera aethiops</italic> or <italic>T. latifrons</italic>, but not if colonized by <italic>Crematogaster</italic> sp., a parasite (<xref ref-type="bibr" rid="B62">Kokolo et&#xa0;al., 2016</xref>). The host plant provides the environment, but the presence of Chaetothyriales as mutualistic partners seems to depend on the ant species.</p>
</sec>
<sec id="s8">
<label>8</label>
<title>Concluding thoughts</title>
<p>The progress of sequencing technologies opened the door to a world of less visible associates of ants. It allowed us to realize how frequent and widespread ecological relationships between Black Fungi and many different ant species are. Ant nests are important, previously overlooked habitats for Chaetothyriales and Capnodiales, the vast majority of which are still undescribed or only known as sequence.</p>
<p>In Chaetothyriales, the phylogenetic pattern (one monophyletic and well separated clade) and functional considerations (possible morphological adaptation and reduced gene functions) suggest that the domatia-associated species have coevolved with ants over a long period of time and have developed specific adaptations to this lifestyle, possibly representing an adaptive radiation. Further research, including a formal quantification of this trait and its mapping onto the phylogeny, would be a valuable aid for understanding the evolution of the ant-fungus mutualism in relation to the lifestyle of both partners.</p>
<p>There are, however, many open questions. Not all Chaetothyriales and Capnodiales detected may be mutualists, but to determine this requires a better understanding of the functional role of the associated fungi. Understanding the functional role also helps in understanding the evolutionary drivers which lead to a beneficial mutualism between ants and Chaetothyriales. Further, we assume that ant-associated Chaetothyriales growing in domatia have a long common history, but the origin of this fungi - ant nest mutualism is unclear. It would not be surprising to find that the ants have recruited the fungi from epiphyllous communities in their foraging environment, or that the fungi migrated into ant nests as a suitable niche and recruited the ants as their dispersal vector. A comprehensive study of the epiphyllous Chaetothyriales and Capnodiales as well as a higher number of genome analyses in ant-associated fungal species, would substantially improve our understanding of the evolution and functional role of the fungal species associated with ant and plant interactions.</p>
<p>Another still unexplored aspect is the defensive benefit of domatia and carton fungi for ants. While the antimicrobial activities of substances from bacterial symbionts in ants have been investigated (<xref ref-type="bibr" rid="B102">Seipke et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B101">Seipke et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B49">Hanshew et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B40">Fukuda et&#xa0;al., 2021</xref>), the role of fungi for protection against pathogens or otherwise detrimental fungi is yet to be considered. There are remarkable examples in other insects where the occurrence of <italic>Penicillium</italic> protects the larvae (<xref ref-type="bibr" rid="B113">Wang et&#xa0;al., 2015b</xref>). Though gene clusters in domatia-associated fungi point to a protective role, it is unknown whether and which substances are released and what their effect might be.</p>
</sec>
<sec id="s9" sec-type="author-contributions">
<title>Author contributions</title>
<p>VM wrote chapters 1, 2, 6 and 8. HV chapter 3. RB chapter 4. CL &amp; JO chapters 5 and 7. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s10" sec-type="funding-information">
<title>Funding</title>
<p>This work received financial support from the Austrian Science Fund FWF (P-31990-Bio) to VM, and from an &#x201c;Investissement d&#x2019;Avenir&#x2019;&#x2019; grant managed by the Agence Nationale de la Recherche (CEBA, ref. ANR-10-LABX-25-01) to CL and JO. For his past research on ant&#x2013;plant symbioses, R.B. received financial support from the French National Research Agency (ANR) (projects CoSy, IFORA and C3A) and from a Franco-Thai Mobility Programme (PHC SIAM, France).</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>We cordially thank Ver&#xf3;nica Barraj&#xf3;n-Santos for help with <xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref> and William John Eden for language revision.</p>
</ack>
<sec id="s11" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as potential conflict of interest.</p>
<p>The reviewer JL declared a past co-authorship with the author RB to the handling editor.</p>
</sec>
<sec id="s12" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
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