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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Environ. Sci.</journal-id>
<journal-title-group>
<journal-title>Frontiers in Environmental Science</journal-title>
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<issn pub-type="epub">2296-665X</issn>
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<article-id pub-id-type="publisher-id">1736698</article-id>
<article-id pub-id-type="doi">10.3389/fenvs.2026.1736698</article-id>
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<subj-group subj-group-type="heading">
<subject>Review</subject>
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</article-categories>
<title-group>
<article-title>The state of cropland nitrous oxide emission research in Sub-Saharan Africa</article-title>
<alt-title alt-title-type="left-running-head">Ouma et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fenvs.2026.1736698">10.3389/fenvs.2026.1736698</ext-link>
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<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Ouma</surname>
<given-names>Turry</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
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<name>
<surname>Barthel</surname>
<given-names>Matti</given-names>
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<sup>2</sup>
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<name>
<surname>Agredazywczuk</surname>
<given-names>Phillip</given-names>
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<sup>3</sup>
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<surname>Tufail</surname>
<given-names>Muhammad A.</given-names>
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<sup>3</sup>
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<surname>Zerssa</surname>
<given-names>Gebeyanesh W.</given-names>
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<sup>4</sup>
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<surname>Gebremichael</surname>
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<sup>5</sup>
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<surname>Leitner</surname>
<given-names>Sonja M.</given-names>
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<sup>6</sup>
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<surname>Oduor</surname>
<given-names>Collins</given-names>
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<sup>6</sup>
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<surname>Ntinyari</surname>
<given-names>Winnie</given-names>
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<sup>6</sup>
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<name>
<surname>Oluoch</surname>
<given-names>Kevin C.</given-names>
</name>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
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<name>
<surname>Otinga</surname>
<given-names>Abigael</given-names>
</name>
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<sup>7</sup>
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<surname>Njoroge</surname>
<given-names>Ruth</given-names>
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<sup>7</sup>
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<surname>Obozinski</surname>
<given-names>Guillaume</given-names>
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<sup>1</sup>
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<surname>Six</surname>
<given-names>Johan</given-names>
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<sup>2</sup>
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<surname>Harris</surname>
<given-names>Eliza J.</given-names>
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<xref ref-type="aff" rid="aff3">
<sup>3</sup>
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<aff id="aff1">
<label>1</label>
<institution>Swiss Data Science Center (EPFL and ETH Zurich)</institution>, <city>Zurich</city>, <country country="CH">Switzerland</country>
</aff>
<aff id="aff2">
<label>2</label>
<institution>Department of Environmental Systems Science, Sustainable Agroecosystems Group, ETH Zurich</institution>, <city>Zurich</city>, <country country="CH">Switzerland</country>
</aff>
<aff id="aff3">
<label>3</label>
<institution>Climate and Environmental Physics and Oeschger Centre for Climate Change Research, University of Bern</institution>, <city>Bern</city>, <country country="CH">Switzerland</country>
</aff>
<aff id="aff4">
<label>4</label>
<institution>Department of Natural Resources Management, College of Agriculture and Veterinary Medicine, Jimma University</institution>, <city>Jimma</city>, <country country="ET">Ethiopia</country>
</aff>
<aff id="aff5">
<label>5</label>
<institution>Department of Physics, College of Natural and Computational Sciences, Haramaya University</institution>, <city>Dire Dawa</city>, <country country="ET">Ethiopia</country>
</aff>
<aff id="aff6">
<label>6</label>
<institution>Mazingira Centre for Environmental Research and Education, International Livestock Research Institute (ILRI)</institution>, <city>Nairobi</city>, <country country="KE">Kenya</country>
</aff>
<aff id="aff7">
<label>7</label>
<institution>Department of Soil Science, University of Eldoret</institution>, <city>Eldoret</city>, <country country="KE">Kenya</country>
</aff>
<author-notes>
<corresp id="c001">
<label>&#x2a;</label>Correspondence: Turry Ouma, <email xlink:href="mailto:tuouma@ethz.ch">tuouma@ethz.ch</email>; Eliza J. Harris, <email xlink:href="mailto:eliza.harris@unibe.ch">eliza.harris@unibe.ch</email>
</corresp>
</author-notes>
<pub-date publication-format="electronic" date-type="pub" iso-8601-date="2026-01-23">
<day>23</day>
<month>01</month>
<year>2026</year>
</pub-date>
<pub-date publication-format="electronic" date-type="collection">
<year>2026</year>
</pub-date>
<volume>14</volume>
<elocation-id>1736698</elocation-id>
<history>
<date date-type="received">
<day>31</day>
<month>10</month>
<year>2025</year>
</date>
<date date-type="rev-recd">
<day>30</day>
<month>12</month>
<year>2025</year>
</date>
<date date-type="accepted">
<day>05</day>
<month>01</month>
<year>2026</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2026 Ouma, Barthel, Agredazywczuk, Tufail, Zerssa, Gebremichael, Leitner, Oduor, Ntinyari, Oluoch, Otinga, Njoroge, Obozinski, Six and Harris.</copyright-statement>
<copyright-year>2026</copyright-year>
<copyright-holder>Ouma, Barthel, Agredazywczuk, Tufail, Zerssa, Gebremichael, Leitner, Oduor, Ntinyari, Oluoch, Otinga, Njoroge, Obozinski, Six and Harris</copyright-holder>
<license>
<ali:license_ref start_date="2026-01-23">https://creativecommons.org/licenses/by/4.0/</ali:license_ref>
<license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License (CC BY)</ext-link>. The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p>
</license>
</permissions>
<abstract>
<p>Nitrous oxide (N<sub>2</sub>O) emissions from cropland soils are a significant source of greenhouse gases in Sub-Saharan Africa (SSA), yet fluxes and drivers remain poorly quantified. This review synthesizes findings from 39 field-based studies across Sub-Saharan Africa to assess current knowledge, key drivers, and research gaps. Additionally, this review offers a focused analysis on the effect of nitrogen fertilizer application on N<sub>2</sub>O emissions. The main finding is that emissions were strongly influenced by nitrogen input rates, precipitation, cropping systems, soil types, and measurement durations. Emission factors often diverge from IPCC Tier 1 defaults, suggesting the need for context-specific values. However, research is unevenly distributed: Studies from Kenya dominate the literature, while large areas, especially in Central Africa, lack data. Methodological inconsistencies further limit comparability across studies. We identify priorities for future research, including geographic expansion, standardized protocols, and improved integration of climate and agronomic variables. Strengthening the regional evidence base is essential for accurate inventories and for developing climate-smart agricultural policies tailored to SSA&#x2019;s diverse agroecosystems.</p>
</abstract>
<kwd-group>
<kwd>cropland soils</kwd>
<kwd>emission factors</kwd>
<kwd>fertilizer induced emissions</kwd>
<kwd>mitigation</kwd>
<kwd>nitrous oxide</kwd>
</kwd-group>
<funding-group>
<award-group id="gs1">
<funding-source id="sp1">
<institution-wrap>
<institution>Schweizerischer Nationalfonds Zur F&#xf6;rderung der Wissenschaftlichen Forschung</institution>
<institution-id institution-id-type="doi" vocab="open-funder-registry" vocab-identifier="10.13039/open_funder_registry">10.13039/501100001711</institution-id>
</institution-wrap>
</funding-source>
<award-id rid="sp1">200021_207348</award-id>
</award-group>
<funding-statement>The author(s) declared that financial support was received for this work and/or its publication. This research was generously supported by the Swiss National Science Foundation (SNSF) under grant number 200021_207348.</funding-statement>
</funding-group>
<counts>
<fig-count count="7"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="110"/>
<page-count count="17"/>
</counts>
<custom-meta-group>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Soil Processes</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<label>1</label>
<title>Introduction</title>
<p>Nitrous oxide (N<sub>2</sub>O) is a potent greenhouse gas (GHG), with a global warming potential (GWP) approximately 273 times greater than carbon dioxide (CO<sub>2</sub>) over a 100-year period (<xref ref-type="bibr" rid="B36">Intergovernmental Panel On Climate Change, 2023</xref>) and it is currently the most important ozone-depleting gas (<xref ref-type="bibr" rid="B77">Ravishankara et al., 2009</xref>). In soils, N<sub>2</sub>O is primarily produced through two biological processes, nitrification and denitrification, with nitrification depending on ammonium NH<sub>4</sub>
<sup>&#x2b;</sup> and oxygen (O<sub>2</sub>) availability, while denitrification depends on nitrate (NO<sub>3</sub>
<sup>&#x2212;</sup>), degradable organic matter, and O<sub>2</sub> limitation. These processes are mainly controlled by soil properties, agricultural management practices, microbial communities and environmental conditions such as soil moisture and temperature and the availability of organic carbon and nitrogen (N) in the soil (<xref ref-type="bibr" rid="B11">Butterbach-Bahl et al., 2013</xref>; <xref ref-type="bibr" rid="B20">Della Chiesa et al., 2019</xref>; <xref ref-type="bibr" rid="B16">Cui et al., 2024</xref>; <xref ref-type="bibr" rid="B72">Pi&#xf1;eiro-Guerra et al., 2025</xref>). Agriculture is the largest source of anthropogenic N<sub>2</sub>O emissions, accounting for approximately 60% of the global total&#x2014;rising from 2.2 (1.6&#x2013;2.8) Tg&#xa0;N&#xa0;yr<sup>&#x2212;1</sup> in 1980 to 3.9 (2.9&#x2013;5.1) Tg&#xa0;N&#xa0;yr<sup>&#x2212;1</sup> in 2020 (<xref ref-type="bibr" rid="B86">Syakila and Kroeze, 2011</xref>; <xref ref-type="bibr" rid="B90">Tian et al., 2024</xref>). Within this agricultural share, croplands, largely driven by synthetic and organic N additions, contribute around one-third of total anthropogenic N<sub>2</sub>O emissions (<xref ref-type="bibr" rid="B89">Tian et al., 2023</xref>). The remaining agricultural emissions primarily originate from livestock systems, including manure management and grazing-related emissions.</p>
<p>N<sub>2</sub>O emissions from croplands in Sub-Saharan Africa (SSA), alongside other GHGs are projected to rise in the coming decades, driven by increasing use of resource inputs, particularly N fertilizers and organic amendments (<xref ref-type="bibr" rid="B33">Hickman et al., 2014</xref>; <xref ref-type="bibr" rid="B91">Tongwane and Moeletsi, 2018</xref>; <xref ref-type="bibr" rid="B106">Zheng et al., 2019</xref>). SSA is home to over 1.26 billion people (<xref ref-type="bibr" rid="B101">World Bank, 2024</xref>), approximately 13% of the global population and faces significant challenges in achieving food security (<xref ref-type="bibr" rid="B56">McGuire, 2015</xref>). This rapidly growing population is expected to drive up greater use of synthetic N fertilizers and manure to meet rising food demand, which is expected to lead increase N<sub>2</sub>O emissions in the region (<xref ref-type="bibr" rid="B46">Leitner et al., 2020</xref>). Given the limited availability of land and ongoing soil degradation, efforts in SSA are increasingly focused on intensifying production and improving yields through strategies such as increasing fertilizer use and enhancing crop nutrient use efficiency (<xref ref-type="bibr" rid="B94">Vanlauwe and Dobermann, 2020</xref>; <xref ref-type="bibr" rid="B39">Jayne and Sanchez, 2021</xref>).</p>
<p>Currently, N fertilizer use in SSA countries are considered the lowest globally, with an average application rate stagnating between 13 and 20&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup> (<xref ref-type="bibr" rid="B21">Dimkpa et al., 2023</xref>) resulting in negative soil nutrient balances and large yield gaps (<xref ref-type="bibr" rid="B60">Mueller et al., 2012</xref>). To address this challenge, regional agricultural policies recommend doubling the use of mineral fertilizers, with some studies within the region recommending raising fertilizer application rates to levels of 50&#xa0;Kg-N&#xa0;ha<sup>-1</sup> particularly in areas with inherently poor soils as part of a broader effort to boost crop productivity and ensure food security (<xref ref-type="bibr" rid="B43">Koussoub&#xe9; and Nauges, 2016</xref>; <xref ref-type="bibr" rid="B91">Tongwane and Moeletsi, 2018</xref>). Although such measures aim to close the yield gap and improve soil fertility, there is a risk of increased GHG emissions, particularly N<sub>2</sub>O emissions. Calls to increase fertilizer use like those of the &#x201c;2006 Abuja Declaration on Fertilizer for the African Green Revolution&#x201d; (<xref ref-type="bibr" rid="B6">African Union, 2006</xref>), led by the African Union member states as well as the &#x201c;2024 Nairobi Declaration on Africa Fertilizer and Soil Health Summit&#x201d; which aim to set up regional policies for improved agricultural production, have raised concerns about potentially reduced nitrogen use efficiency (NUE) and the possibility for greater environmental harm through processes such as leaching (<xref ref-type="bibr" rid="B95">Vanlauwe et al., 2023</xref>). However, it is important to consider these concerns in light of yield-scaled emissions. Evidence suggests that when fertilizer rates are increased within a reasonable agronomic threshold (approximately 120-150&#xa0;Kg-N&#xa0;ha<sup>-1</sup>), yield scaled N<sub>2</sub>O emissions often decrease, since higher yields compensate for the rise in absolute emissions (<xref ref-type="bibr" rid="B46">Leitner et al., 2020</xref>). From a land use perspective, intensifying fertilizer use on existing cropland can be preferable to expanding cultivation into new areas, which will typically result in lower crop producing croplands with high yield scaled emissions. Moreover, insufficient fertilization can lead to soil nutrient mining and the depletion of soil organic carbon (SOC) stocks, further contributing to greenhouse gas emissions (<xref ref-type="bibr" rid="B93">Van Loon et al., 2019</xref>).</p>
<p>Research has shown that intensification efforts, particularly for staple crops like maize (Zea mays L), could potentially lead to major increases in N<sub>2</sub>O emissions from soils (while reducing yield-scaled emissions), highlighting the need for yield improvement strategies that also consider environmental sustainability (<xref ref-type="bibr" rid="B46">Leitner et al., 2020</xref>). For SSA, the socioeconomic and environmental situation necessitates a delicate balance between food security and mitigation of N pollution, particularly N<sub>2</sub>O production. This requires a clear understanding of N cycling and N<sub>2</sub>O emission mechanisms, to allow accurate assessment of emission levels and development of strategies to ensure a sustained food supply (<xref ref-type="bibr" rid="B78">Rosenstock et al., 2013</xref>; <xref ref-type="bibr" rid="B9">Bodirsky et al., 2014</xref>; <xref ref-type="bibr" rid="B40">Kim et al., 2021</xref>; <xref ref-type="bibr" rid="B105">Zhang et al., 2024</xref>).</p>
<p>Cropland N<sub>2</sub>O emissions from SSA are currently underrepresented in global GHG datasets. This is primarily due to the limited number of field studies conducted in the region, hence limiting the activity data for national inventories (<xref ref-type="bibr" rid="B71">Perez-Quezada et al., 2023</xref>). In addition, limited access to proper infrastructure hinders study replications and extensive analysis on the effects of different farming practices. As a result, most countries in the region continue to rely on Tier 1 emission factors provided by the Intergovernmental Panel on Climate Change (IPCC) for their national GHG inventories, which are largely based on data from temperate ecosystems and may not accurately reflect conditions in SSA (<xref ref-type="bibr" rid="B34">Hickman et al., 2015</xref>; <xref ref-type="bibr" rid="B12">Butterbach-Bahl et al., 2016</xref>; <xref ref-type="bibr" rid="B89">Tian et al., 2023</xref>; <xref ref-type="bibr" rid="B92">Tully et al., 2023</xref>). Previous research suggests that default approaches may overestimate emissions (<xref ref-type="bibr" rid="B106">Zheng et al., 2019</xref>). Additionally, a methodological challenge persists in the way different studies quantify soil N<sub>2</sub>O emissions, with variations in measurement approaches and data analysis leading to potential biases in data. Furthermore, knowledge gaps also arise from variations in fertilizer use, rainfall patterns, temperature, and soil types across the region, highlighting the need for localized data to better understand the drivers of emissions (<xref ref-type="bibr" rid="B11">Butterbach-Bahl et al., 2013</xref>).</p>
<p>Considering the knowledge gaps regarding N<sub>2</sub>O emissions and processes in SSA, and the uncertainty in current methods to quantify emissions, this review seeks to:<list list-type="order">
<list-item>
<p>Analyze the current state of knowledge and key drivers of cropland N<sub>2</sub>O emissions in SSA</p>
</list-item>
<list-item>
<p>Assess N<sub>2</sub>O accounting and data comparability across studies and countries in SSA, supporting more accurate emissions inventories.</p>
</list-item>
<list-item>
<p>Support the development of predictive models and identify scalable mitigation strategies, ultimately informing climate-smart agricultural policies.</p>
</list-item>
</list>
</p>
</sec>
<sec sec-type="methods" id="s2">
<label>2</label>
<title>Methodology</title>
<sec id="s2-1">
<label>2.1</label>
<title>Literature search and study selection</title>
<p>A systematic search was conducted across major academic databases, including Google Scholar, Web of Science, and Scopus, using the keywords &#x201c;nitrous oxide emissions&#x201d;, &#x201c;cropping systems&#x201d;, &#x201c;emission factors&#x201d;, and &#x201c;Sub-Saharan Africa&#x201d;. These platforms were chosen for their extensive collections of peer-reviewed articles, ensuring access to high-quality research. Unlike previous meta-analyses, our approach explicitly included cropping systems, fertilizer use, and soil properties, broadening the scope of the search. We adopted the Intergovernmental Panel of Climate Change (<xref ref-type="bibr" rid="B37">IPCC, 2006a</xref>) definition of cropland, which includes arable and tillable land, rice fields, and agroforestry systems not classified as forest. From the initial screening, 1,410 studies were selected (<xref ref-type="fig" rid="F1">Figure 1</xref>), of which 39 met the criteria for inclusion in the final analysis. A further subset of 20 studies was retained for fertilizer-specific comparisons, as these provided explicit fertilizer treatment data. Articles were systematically excluded due to the following reasons: i) Lack of focus on N<sub>2</sub>O emissions&#x2013;many papers mentioned nitrogen cycling, soil health, or greenhouse gases broadly but did not report specific N<sub>2</sub>O flux measurements; ii) Absence of <italic>in situ</italic> measurements&#x2013;some studies modeled emissions or relied on literature reviews rather than direct field measurements; iii) Study type exclusions&#x2013;laboratory incubation studies, management-focused studies whose primary aim was to test or evaluate specific management interventions designed to reduce N<sub>2</sub>O emissions, rather than to measure baseline or typical emissions under standard agricultural practices, meta-analyses, non-peer-reviewed HTML documents and geographic mismatch.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Preferred reporting items for systematic reviews and meta-analyses (PRISMA) flow diagram for this review of cropland N<sub>2</sub>O emissions from sub-Saharan Africa.</p>
</caption>
<graphic xlink:href="fenvs-14-1736698-g001.tif">
<alt-text content-type="machine-generated">Flowchart illustrating the selection process for a review, divided into four stages: Identification, Screening, Eligibility, and Included. Initially, 2,992 records from Web of Science, 3,640 from Google Scholar, and 639 from Scopus were identified. After removing duplicates, 1,410 records were screened. Of these, 985 were excluded due to lack of N&#x2082;O flux measurements or geographic mismatch. Then, 425 full-text articles were assessed, with 345 excluded for reasons like incubation studies and non-peer-reviewed documents. Finally, 80 studies were assessed, 41 excluded for lacking in situ measurements, resulting in 39 studies included, with 20 analyzed for fertilizer-induced emissions.</alt-text>
</graphic>
</fig>
<p>After applying these filters, 39 studies spanning 13 countries remained (covering the years 2004&#x2013;2025), all of which either reported <italic>in situ</italic> annual N<sub>2</sub>O emissions or provided sufficient data for unit conversion-based estimation (see Annex 2). These studies covered diverse cropping systems and soil types, with data spanning from 1999 to 2025 (no date restrictions were applied to maximize inclusion). As climate data was not explicitly reported in many studies, mean annual temperature (MAT) was sourced from WorldClim 2.1 (<xref ref-type="bibr" rid="B25">Fick and Hijmans, 2017</xref>) and mean annual precipitation (MAP) from CHIRPS (<xref ref-type="bibr" rid="B28">Funk et al., 2015</xref>) with an average for the year range of 2000&#x2013;2020.</p>
<p>The extracted and compiled dataset included:<list list-type="bullet">
<list-item>
<p>N<sub>2</sub>O fluxes and associated emission values.</p>
</list-item>
<list-item>
<p>Experimental and environmental properties&#x2013;soil type, cropping system, rainfall, soil temperature, fertilizer treatment levels, fertilizer type, soil texture (clay/silt/sand composition), measurement duration, and geographic coordinates.</p>
</list-item>
<list-item>
<p>Climate data&#x2013;MAT and MAP.</p>
</list-item>
</list>
</p>
</sec>
<sec id="s2-2">
<label>2.2</label>
<title>Subset of N-fertilizer-induced N<sub>2</sub>O emissions</title>
<p>For a focused analysis on the effect of N fertilizer application on N<sub>2</sub>O emissions, a subset of studies was extracted from the full review database. Studies were included in this subset if they explicitly reported fertilizer-induced N<sub>2</sub>O fluxes or emission factors, or if they presented treatment comparisons between fertilized and unfertilized plots. This subset was used to evaluate emission responses to different nitrogen input levels. This selection resulted in 20 studies with comprehensive data (see Annex 3).</p>
</sec>
<sec id="s2-3">
<label>2.3</label>
<title>Data analysis</title>
<p>Data on annual N<sub>2</sub>O emissions were standardized to kg N<sub>2</sub>O-N ha<sup>-1</sup>&#xa0;yr<sup>-1</sup> to facilitate cross-study comparisons. Extreme high values were inspected and retained unless they were clearly attributable to measurement or reporting errors. To address skewness, variance-robust statistical approaches were applied. In most cases, means were reported because they capture the full contribution of episodic pulses that often dominate annual N<sub>2</sub>O totals in SSA and are consistent with inventory-oriented reporting (<xref ref-type="bibr" rid="B38">IPCC, 2006b</xref>), In some cases, medians were used, for example, when sample sizes were very small or when distributions were highly skewed to provide a robust summary less influenced by outliers. Where studies reported annual totals, we used those values directly. For studies in multi-cropping systems that provided season level measurements for all seasons, seasonal fluxes were summed to obtain an annual total. For studies that reported only a single season in regions known to have multiple cropping seasons, we treated those observations as seasonal. Where possible, data were aggregated by region, crop type, or fertilizer treatment to identify broad trends. Averages, medians, and ranges of emission estimates were calculated to highlight variability across studies. Statistical analyses were conducted to explore relationships between N<sub>2</sub>O emissions and key drivers such as fertilizer application rates, soil properties, and climatic conditions. To determine the most suitable data-fitting models, we evaluated a range of approaches, including linear, nonlinear, natural log, and logarithmic models. Model selection was based primarily on the Akaike Information Criterion (AIC), which provides a robust framework for comparing models by balancing goodness of fit with model complexity and penalizing additional parameters. Statistical significance was set at a 5% critical level. For the regression analyses of N<sub>2</sub>O fluxes across treatments, model assumptions of homoscedasticity and normality were evaluated using residual diagnostics. Where the raw data exhibited skewness or non-constant variance, log or natural log transformations were applied to stabilize the variance and improve normality. The best-fitting model for the dataset was selected based on statistical robustness and interpretability in the context of the research question. All statistical analyses were performed using the R software to ensure the robustness of the results (<xref ref-type="bibr" rid="B76">R Core Team, 2024</xref>).</p>
</sec>
</sec>
<sec sec-type="results|discussion" id="s3">
<label>3</label>
<title>Results and discussion</title>
<sec id="s3-1">
<label>3.1</label>
<title>Current understanding of N<sub>2</sub>O emissions in SSA</title>
<p>Our estimate of SSA&#x2019;s average total cropland N<sub>2</sub>O emission is considerable, estimated at 0.24 &#xb1; 0.028&#xa0;Tg N<sub>2</sub>O-N yr<sup>-1</sup> based on a total cropland area of 322.63 million ha across nine countries that reported emission factors (Annex 4). This constitutes up to 20% of cropland global emissions, estimates which have increased roughly 1-3 times in the last decades, ranging from 0.4&#x2013;1.4&#xa0;Tg N<sub>2</sub>O-N yr<sup>-1</sup> in the 1960s to 1.3&#x2013;3.3&#xa0;Tg N<sub>2</sub>O-N yr<sup>-1</sup> in the 2010s (<xref ref-type="bibr" rid="B88">Tian et al., 2019</xref>; <xref ref-type="bibr" rid="B99">Wang et al., 2020</xref>; <xref ref-type="bibr" rid="B102">Xu et al., 2020</xref>). In our analysis, the average area-weighted cropland N<sub>2</sub>O emission was estimated at 0.73 &#xb1; 0.09&#xa0;kg N<sub>2</sub>O-N ha<sup>-1</sup>&#xa0;yr<sup>-1</sup> with values ranging from 0 to 2.76&#xa0;kg N<sub>2</sub>O-N ha<sup>-1</sup>&#xa0;yr<sup>-1</sup> across all site-year combinations. This estimate excludes vegetable systems, which often exhibit disproportionately high emissions due to intensive fertilization and greenhouse cultivation, despite covering relatively small land areas. This compared to 1.24&#xa0;kg N<sub>2</sub>O-N ha<sup>&#x2212;1</sup>&#xa0;yr<sup>&#x2212;1</sup> the average total N<sub>2</sub>O emissions reported for SSA (<xref ref-type="bibr" rid="B89">Tian et al., 2023</xref>). While high-emitting regions globally, such as the North China Plain, Ganges Basin, Saudi Arabia, and parts of Western Europe report emissions exceeding 4&#xa0;kg N<sub>2</sub>O-N ha<sup>-1</sup>&#xa0;yr<sup>-1</sup> due to fertilizer inputs that go above 350&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup>&#xa0;yr<sup>-1</sup> in some regions, SSA&#x2019;s agricultural systems are characterized by much lower N inputs, typically under 50&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup>&#xa0;yr<sup>-1</sup> (<xref ref-type="bibr" rid="B55">Masso et al., 2017</xref>; <xref ref-type="bibr" rid="B23">Elrys et al., 2020</xref>). Despite the relatively low synthetic N inputs and direct emissions, SSA&#x2019;s total N<sub>2</sub>O emissions remain notable due to the region&#x2019;s vast cropland area. Emission Factors (EFs) across SSA are highly variable, ranging from 0.01% to 4.1% and observed emissions (including vegetables) span from as low as 0.01 up to 113.4&#xa0;kg N<sub>2</sub>O-N ha<sup>&#x2212;1</sup>&#xa0;yr<sup>&#x2212;1</sup> reflecting the diversity of agro-ecological conditions and management practices.</p>
<p>The 39 studies compiled in this review span several countries in SSA (<xref ref-type="fig" rid="F2">Figure 2</xref>), with Kenya having the highest representation, contributing 18 studies in 16 locations (<xref ref-type="table" rid="T1">Table 1</xref>). Measurement durations ranged from as short as 21 days to as long as 3 years. A significant portion (63%) of studies measured annual N<sub>2</sub>O fluxes, typically spanning 12 months or more, with an average duration of 16.4 months. Seasonal flux studies (32.6%) focused on growing seasons, ranging from 2 to 9 months, with an average duration of 5.5 months. Short-duration studies (4.3%) were relatively uncommon, lasting only a few weeks to under 2 months (Annex 2). Between 1999 and 2008, studies tended to be short-term in nature. From 2009 onwards, there was a clear shift toward multi-year studies. After 2020, studies increasingly cover 12 months and more, likely due to advancements in research methodologies and automation, as well as greater funding availability.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Study distribution of cropland nitrous oxide emission measurements and reported mean annual emission estimates across Sub-Saharan Africa. Vegetable studies were excluded because their exceptionally high N<sub>2</sub>O emissions distorted the scale and obscured patterns among other crops. Layered visualizations: light grey: All SSA countries, medium grey: countries with N<sub>2</sub>O field studies but no reported fertilizer induced emissions, dark grey: countries reporting fertilizer induced emissions. Circles represent the study locations and the size and color of the circle represents the magnitude of mean annual emissions (kg N<sub>2</sub>O-N ha-1&#xa0;yr-1).</p>
</caption>
<graphic xlink:href="fenvs-14-1736698-g002.tif">
<alt-text content-type="machine-generated">Map of Africa displaying mean nitrous oxide emissions (kg N&#x2082;O-N/ha/year) by country. Colored dots represent emission levels: blue for 3, purple for 2, red for 1, and yellow for 0. Notable countries include Kenya and Ghana with high emissions. A legend on the right explains the color coding.</alt-text>
</graphic>
</fig>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Distribution of cropland N<sub>2</sub>O emissions studies from SSA by country, location and year of measurements. Distribution of cropland N<sub>2</sub>O emissions studies from SSA by country, location and year of measurements. Countries missing data: Angola, Benin, Burundi, Central African Republic, Chad, Congo, Dem. Rep., Congo, Rep., Cote d&#x27;Ivoire, Djibouti, Equatorial Guinea, Eritrea, Gabon, Gambia, The, Guinea, Guinea-Bissau, Lesotho, Liberia, Libya, Malawi, Mauritius, Mozambique, Namibia, Rwanda, Senegal, Sierra Leone, Somalia, South Sudan, Sudan, Togo, Zambia.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="center">Region</th>
<th align="center">Country</th>
<th align="center">No. of studies</th>
<th align="center">No. of locations</th>
<th align="center">1st year of measurements</th>
<th align="center">Last year of measurements</th>
<th align="center">Fertilizer effect studies with treatment level data provision</th>
<th colspan="2" align="center">Average emissions by country and unit (averages are only reported for countries with sufficient replicates; other countries show individual study values</th>
<th align="center">Frequency of measurements</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="right">Central Africa</td>
<td align="right">Cameroon</td>
<td align="right">1</td>
<td align="right">1</td>
<td align="right">2020</td>
<td align="right">2020</td>
<td align="left">&#x200b;</td>
<td align="right">0.97</td>
<td align="right">kg ha<sup>&#x2212;1</sup> yr<sup>&#x2212;1</sup>
</td>
<td align="left">2 times per month (1)</td>
</tr>
<tr>
<td rowspan="4" align="right">East Africa</td>
<td align="right">Ethiopia</td>
<td align="right">1</td>
<td align="right">1</td>
<td align="right">2015</td>
<td align="right">2016</td>
<td align="left">&#x200b;</td>
<td align="right">0.03</td>
<td align="right">kg ha<sup>&#x2212;1</sup> yr<sup>&#x2212;1</sup>
</td>
<td align="left">Weekly (1)</td>
</tr>
<tr>
<td align="right">Kenya</td>
<td align="right">18</td>
<td align="right">16</td>
<td align="right">1999</td>
<td align="right">2020</td>
<td align="right">11</td>
<td align="right">0.81</td>
<td align="right">kg ha<sup>&#x2212;1</sup> yr<sup>&#x2212;1</sup>
</td>
<td align="left">Daily (3), weekly (4), 1&#x2013;3 days per week (1), weekly then biweekly (1), daily, weekly then biweekly (1), daily to weekly or monthly (1), 3 times per month (1), following key events and biweekly (1), 1-2 times per week (1), 2 times a week during rainy season, 2 weeks after fertilization then weekly (1), weekly after key events and biweekly during the off season (1), 1-2 times per week (1),2 days following each fertilization event (1)</td>
</tr>
<tr>
<td align="right">Tanzania</td>
<td align="right">4</td>
<td align="right">4</td>
<td align="right">2012</td>
<td align="right">2017</td>
<td align="right">1</td>
<td align="right">1.183</td>
<td align="right">kg ha<sup>&#x2212;1</sup> yr<sup>&#x2212;1</sup>
</td>
<td align="left">Daily (2), not disclosed (1), weekly (1), weekly to monthly (1)</td>
</tr>
<tr>
<td align="right">Uganda</td>
<td align="right">1</td>
<td align="right">1</td>
<td align="right">2018</td>
<td align="right">2018</td>
<td align="left">&#x200b;</td>
<td align="right">5.2</td>
<td align="right">&#x3bc;g m<sup>-2</sup> h<sup>-1</sup>
</td>
<td align="left">4-5 times per month (1)</td>
</tr>
<tr>
<td rowspan="3" align="right">Southern Africa</td>
<td align="right">South Africa</td>
<td align="right">1</td>
<td align="right">1</td>
<td align="right">2018</td>
<td align="right">2019</td>
<td align="left">&#x200b;</td>
<td align="right">0.2</td>
<td align="right">&#x3bc;g ha<sup>&#x2212;1</sup> day<sup>&#x2212;1</sup>
</td>
<td align="left">Daily (1)</td>
</tr>
<tr>
<td align="right">Madagascar</td>
<td align="right">1</td>
<td align="right">1</td>
<td align="right">2006</td>
<td align="right">2007</td>
<td align="right">0</td>
<td align="right">0.3</td>
<td align="right">kg ha<sup>&#x2212;1</sup> yr<sup>&#x2212;1</sup>
</td>
<td align="left">Weekly (1)</td>
</tr>
<tr>
<td align="right">Zimbabwe</td>
<td align="right">6</td>
<td align="right">5</td>
<td align="right">2000</td>
<td align="right">2023</td>
<td align="right">4</td>
<td align="right">3.22</td>
<td align="right">kg ha<sup>&#x2212;1</sup> yr<sup>&#x2212;1</sup>
</td>
<td align="left">Weekly (1), during rainy season (1), biweekly (2), not disclosed (1)</td>
</tr>
<tr>
<td rowspan="5" align="right">West Africa</td>
<td align="right">Burkina Faso</td>
<td align="right">2</td>
<td align="right">3</td>
<td align="right">2006</td>
<td align="right">2009</td>
<td align="right">1</td>
<td align="right">96.95&#x2a;</td>
<td align="right">kg ha<sup>&#x2212;1</sup> yr<sup>&#x2212;1</sup>
</td>
<td align="left">1&#x2013;3 per week (1), twice a day (1)</td>
</tr>
<tr>
<td align="right">Ghana</td>
<td align="right">1</td>
<td align="right">1</td>
<td align="right">2013</td>
<td align="right">2014</td>
<td align="right">1</td>
<td align="right">2.76</td>
<td align="right">kg ha<sup>&#x2212;1</sup> yr<sup>&#x2212;1</sup>
</td>
<td align="left">Daily during fertilization, then weekly (1)</td>
</tr>
<tr>
<td align="right">Nigeria</td>
<td align="right">2</td>
<td align="right">2</td>
<td align="right">2000</td>
<td align="right">2019</td>
<td align="right">2</td>
<td align="right">0.2</td>
<td align="right">kg ha<sup>&#x2212;1</sup> yr<sup>&#x2212;1</sup>
</td>
<td align="left">Weekly (1), 1&#x2013;3 days to 2 weeks (1)</td>
</tr>
<tr>
<td align="right">Mali</td>
<td align="right">1</td>
<td align="right">1</td>
<td align="right">2004</td>
<td align="right">2005</td>
<td align="left">&#x200b;</td>
<td align="right">1.2</td>
<td align="right">kg ha<sup>&#x2212;1</sup> yr<sup>&#x2212;1</sup>
</td>
<td align="left">Monthly (1)</td>
</tr>
<tr>
<td align="right">Niger</td>
<td align="right">1</td>
<td align="right">1</td>
<td align="right">2006</td>
<td align="right">2007</td>
<td align="left">&#x200b;</td>
<td align="right">70&#x2a;</td>
<td align="right">kg ha<sup>&#x2212;1</sup> yr<sup>&#x2212;1</sup>
</td>
<td align="left">Twice a day for 6 days (1)</td>
</tr>
<tr>
<td align="right">Total</td>
<td align="right">13</td>
<td align="right">39</td>
<td align="left">&#x200b;</td>
<td align="left">&#x200b;</td>
<td align="left">&#x200b;</td>
<td align="right">20</td>
<td align="left">&#x200b;</td>
<td align="left">&#x200b;</td>
<td align="left">&#x200b;</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>&#x2a;Emissions from vegetables.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>Sampling frequency varied extensively across studies. The most common frequency was weekly, reported in 6 studies, followed by daily measurements in another 6 studies. A few studies report measurements twice per week (2 studies), and some are event-based, with measurements taken following specific agricultural events such as fertilization (4 studies). Monthly measurements are less common, with 3 studies using this frequency. From a sub-sample of N<sub>2</sub>O emissions from maize we sought to assess if there was any effect of length of measurements. <xref ref-type="fig" rid="F3">Figure 3</xref> illustrates how the duration of N<sub>2</sub>O emission measurements influence the reported emission estimates. Studies categorized by study duration reveal clear differences in mean emissions (kg N<sub>2</sub>O-N ha<sup>&#x2212;1</sup>&#xa0;yr<sup>&#x2212;1</sup>).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>The box and whiskers represent the effect of study duration on reported mean N<sub>2</sub>O emissions (kg N<sub>2</sub>O-N ha-1&#xa0;yr-1) from maize crop. Emission data are grouped by study duration: Long term (equal to or more than 1&#xa0;year) and seasonal fluxes (a combination of short duration studies and seasonal studies-covering main cropping season. The number of observations (n) is annotated each boxplot. Long term studies tend to report higher and more variable emissions, likely capturing additional off-season pulses and episodic events missed by shorter studies.</p>
</caption>
<graphic xlink:href="fenvs-14-1736698-g003.tif">
<alt-text content-type="machine-generated">Box plot showing mean N&#x2082;O emissions in kilograms per hectare per year for two study duration categories: Long-term (greater than or equal to one year) with higher variability, and Seasonal fluxes with lower emissions. Long-term category has 15 data points and Seasonal fluxes has 13 data points.</alt-text>
</graphic>
</fig>
<p>Studies that measured annual fluxes tend to report higher and more variable emissions than seasonal or short-term studies, likely because they capture key off-season pulses or episodic rainfall-triggered events that shorter studies miss. In contrast, seasonal and short-duration studies, which often cover only the cropping period or a few months, show lower median emissions and reduced variability. A Kruskal&#x2013;Wallis test comparing emissions between short-term/seasonal studies (&#x2264;1 season) and long-term studies (&#x2265;1&#xa0;year) indicated a trend toward higher emissions in long-term studies (&#x3c7;<sup>2</sup> &#x3d; 3.24, df &#x3d; 1, p &#x3d; 0.072), though the difference was not statistically significant. While our dataset does not allow us to quantify the extent of potential underestimation due to the limited number of replicates, the contrast between growing-season and annual emissions observed in other studies (<xref ref-type="bibr" rid="B66">Ortiz-Gonzalo et al., 2018</xref>; <xref ref-type="bibr" rid="B83">Shumba et al., 2023</xref>; <xref ref-type="bibr" rid="B107">Zheng et al., 2023</xref>) suggests that restricting measurements to short timeframes may risk missing emissions occurring outside peak periods. Therefore, longer-term monitoring could help improve understanding of the full emission dynamics, especially in rainfed systems with high temporal variability. A limitation of our analysis is that annualization did not account for differences between single and double cropping systems. As a result, comparisons of annualized emissions across countries may be biased, with multi-season systems appearing to emit more simply due to the additional fertilization events. Future work should separate seasonal emissions or use yield-scaled metrics to allow for more balanced comparisons across contrasting cropping systems.</p>
</sec>
<sec id="s3-2">
<label>3.2</label>
<title>Influence of nitrogen fertilizer application rates on N<sub>2</sub>O emissions</title>
<p>We analyzed emissions across five fertilizer application rate categories (Unfertilized control or (0&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup>), &#x3c;50 (less than 50 but more than 0), 51&#x2013;100, 101&#x2013;150, &#x3e;150&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup>), and observed a clear trend of increasing median annual N<sub>2</sub>O emissions (median &#x223c;0.1&#xa0;kg N<sub>2</sub>O&#x2013;N ha<sup>-1</sup>&#xa0;yr<sup>-1</sup>) to &#x2264;50&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup> (&#x223c;0.2), 51&#x2013;100&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup> (&#x223c;0.4), and 101&#x2013;150&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup> (&#x223c;0.5) and mean with higher N input levels, peaking in the 101&#x2013;150&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup> range (&#x223c;1.11&#xa0;kg N<sub>2</sub>O-N ha<sup>&#x2212;1</sup>&#xa0;yr<sup>&#x2212;1</sup>; EF &#x2248; 0.9%) (<xref ref-type="fig" rid="F4">Figure 4</xref>; <xref ref-type="sec" rid="s11">Supplementary Figure S1</xref>). Higher application rates (&#x3e;150&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup>) are sparsely represented. Interestingly, mean emissions in the &#x3e;150&#xa0;kg&#xa0;ha<sup>-1</sup> group appear low (&#x223c;0.59&#xa0;kg N<sub>2</sub>O-N ha<sup>&#x2212;1</sup>&#xa0;yr<sup>&#x2212;1</sup>) but are however based on only six data points (<xref ref-type="sec" rid="s11">Supplementary Figure S1</xref>), and may reflect limited representation, site-specific dynamics, or possibly as shown in one study, the shorter length of the study (3-month period). Emissions under control conditions (no added N) averaged 0.19&#xa0;kg N<sub>2</sub>O-N ha<sup>&#x2212;1</sup>&#xa0;yr<sup>&#x2212;1</sup>. This baseline still shows appreciable fluxes, possibly due to N deposition, soil mineralization, or rewetting events. These trends suggest that fertilizer-induced emissions are generally proportional to application rates, and that NUEs may decline beyond 100&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup>, aligning with recent discussions around optimal fertilization thresholds in SSA (<xref ref-type="bibr" rid="B21">Dimkpa et al., 2023</xref>; <xref ref-type="bibr" rid="B24">Falconnier et al., 2023</xref>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Distribution of annual N<sub>2</sub>O emissions across nitrogen input categories. Boxplots show the median (horizontal line), interquartile range (box), and variability (whiskers), with points representing individual study observations. Sample sizes (n) for each fertilizer rate category are shown above boxplots. Grey points indicate vegetables and tea. Included studies: <xref ref-type="bibr" rid="B10">Brummer et al. (2008)</xref>, <xref ref-type="bibr" rid="B4">Atakora et al. (2019)</xref>, <xref ref-type="bibr" rid="B33">Hickman et al. (2014)</xref>, <xref ref-type="bibr" rid="B34">Hickman et al. (2015)</xref>, <xref ref-type="bibr" rid="B41">Kimetu et al. (2007)</xref>, <xref ref-type="bibr" rid="B50">Macharia et al. (2021)</xref>, <xref ref-type="bibr" rid="B49">Musafiri et al. (2020)</xref>, <xref ref-type="bibr" rid="B50">Musafiri et al. (2021)</xref>, <xref ref-type="bibr" rid="B62">Musuya et al. (2019)</xref>, <xref ref-type="bibr" rid="B100">Wanyama et al. (2018)</xref>, <xref ref-type="bibr" rid="B44">Kurgat et al. (2018)</xref>, <xref ref-type="bibr" rid="B14">Chapuis-Lardy et al. (2009)</xref>, <xref ref-type="bibr" rid="B3">Alasinrin et al. (2025)</xref>, <xref ref-type="bibr" rid="B109">Roing (2004)</xref>, <xref ref-type="bibr" rid="B110">Kimaro (2015)</xref>, <xref ref-type="bibr" rid="B106">Zheng et al. (2019)</xref>, <xref ref-type="bibr" rid="B15">Chikowo et al. (2007)</xref>, <xref ref-type="bibr" rid="B53">Mapanda et al. (2011)</xref>, <xref ref-type="bibr" rid="B64">Nyamadzawo et al. (2014)</xref>.</p>
</caption>
<graphic xlink:href="fenvs-14-1736698-g004.tif">
<alt-text content-type="machine-generated">Box plot showing N&#x2082;O-N emissions in kilograms per hectare per year across different nitrogen fertilizer rates. Categories include control, less than 50, 51-100, 101-150, and greater than 150 kilograms per hectare. Emissions increase with higher rates, particularly above 150. Significance is indicated by stars and &#x22;ns&#x22; above each comparison. Sample sizes are noted under each category.</alt-text>
</graphic>
</fig>
<p>Our findings support the notion that moderate N application (&#x2264;100&#xa0;kg/ha) may strike a balance between minimizing emissions and maintaining yield gains. <xref ref-type="bibr" rid="B4">Atakora et al. (2019)</xref> further found diminishing agronomic efficiency beyond 100&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup>, suggesting a plateau in yield response despite increased emissions. Meanwhile, our finding that emissions do not increase exponentially at high rates differs slightly from global meta-analyses which suggest nonlinear responses at very high N levels (e.g., exponential increases above crop demand thresholds). This difference may reflect the limited number of high-N (&#x3e;150&#xa0;N&#xa0;ha<sup>-1</sup>) field studies available for SSA, or it may reflect different microbial processes and physicochemical properties in tropical soils. Although some SSA assessments (<xref ref-type="bibr" rid="B83">Shumba et al., 2023</xref>; <xref ref-type="bibr" rid="B92">Tully et al., 2023</xref>) report exponential increases in N<sub>2</sub>O emissions at higher nitrogen application rates, our synthesis reveals a predominantly linear response across the observed dataset (<xref ref-type="fig" rid="F4">Figure 4</xref>; <xref ref-type="sec" rid="s11">Supplementary Figure S2</xref>). Both <xref ref-type="bibr" rid="B92">Tully et al. (2023)</xref> and <xref ref-type="bibr" rid="B83">Shumba et al. (2023)</xref> found that application rates around 50&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup> resulted in relatively low emissions while maintaining maize productivity. Similarly, <xref ref-type="bibr" rid="B34">Hickman et al. (2015)</xref> demonstrated substantial yield gains under fertilizer rates &#x2264;100&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup> in Western Kenya without proportionate increases in N<sub>2</sub>O emissions. These findings are consistent with earlier studies showing that synchronizing N inputs with crop N demand can minimize emissions while sustaining yields (<xref ref-type="bibr" rid="B56">McSwiney, 2005</xref>). It is important to note, however, that these relationships can vary depending on crop growth stage, nitrogen uptake dynamics, and environmental conditions (<xref ref-type="bibr" rid="B34">Hickman et al., 2015</xref>; <xref ref-type="bibr" rid="B52">Maier et al., 2022</xref>).</p>
<p>Our second key result is the observation of high variability in emissions within each fertilizer rate category, particularly between 101 and 150&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup>, emphasizing that fertilizer alone cannot fully explain N<sub>2</sub>O fluxes. Site-level variability, likely driven by interactions among soil type, moisture, climate, and management practices modulates the emissions response. For instance, pulses of N<sub>2</sub>O in control treatments (<xref ref-type="bibr" rid="B7">Barton et al., 2008</xref>; <xref ref-type="bibr" rid="B33">Hickman et al., 2014</xref>; <xref ref-type="bibr" rid="B106">Zheng et al., 2019</xref>) highlight the influence of soil organic matter turnover and rainfall dynamics, particularly during rewetting events (<xref ref-type="bibr" rid="B17">Davidson, 2009</xref>). <xref ref-type="sec" rid="s11">Supplementary Figure S2</xref> illustrates how the relationship between fertilizer rate and emissions varies by country, with Ghana and Nigeria showing the strongest treatment-emission signals. This supports the need for country-specific emissions factors or models, especially where climate and soil types differ. In some countries, limited or highly clustered data may obscure trends altogether, reinforcing the importance of regionalized data collection.</p>
<p>Due to limited availability of unfertilized control measurements in many studies, we estimate emission factors (EFs) as the ratio of total N<sub>2</sub>O emissions to applied N fertilizer, assuming minimal contribution from soil N mining or other background sources. This approach is consistent with findings by <xref ref-type="bibr" rid="B20">Della Chiesa et al. (2019)</xref>, who showed that although background emissions can represent a substantial proportion of cropland N<sub>2</sub>O fluxes, fertilized treatments still emit more than background levels. The resulting EFs vary broadly, from as low as 0.05% in low-input systems up to over 4% in intensively fertilized fields, with a median around 0.4%&#x2013;0.7%. Although the number of replicates is limited in several countries, most of the available studies-particularly from Kenya, Tanzania and Zimbabwe report Efs below the IPCC default of 1% (<xref ref-type="bibr" rid="B58">Millar et al., 2004</xref>; <xref ref-type="bibr" rid="B15">Chikowo et al., 2007</xref>; <xref ref-type="bibr" rid="B14">Chapuis-Lardy et al., 2009</xref>; <xref ref-type="bibr" rid="B33">Hickman et al., 2014</xref>; <xref ref-type="bibr" rid="B79">Rosenstock et al., 2016</xref>; <xref ref-type="bibr" rid="B4">Atakora et al., 2019</xref>; <xref ref-type="bibr" rid="B62">Musuya et al., 2019</xref>; <xref ref-type="bibr" rid="B106">Zheng et al., 2019</xref>; <xref ref-type="bibr" rid="B8">Bigaignon et al., 2020</xref>; <xref ref-type="bibr" rid="B49">Macharia et al., 2020</xref>; <xref ref-type="bibr" rid="B97">Wachiye et al., 2020</xref>; <xref ref-type="bibr" rid="B59">Mosongo et al., 2022</xref>; <xref ref-type="bibr" rid="B47">Lemarpe et al., 2023</xref>; <xref ref-type="bibr" rid="B3">Alasinrin et al., 2025</xref>)), suggesting that this default may overestimate typical emissions in these systems.</p>
<p>Our synthesis indicates that N<sub>2</sub>O emissions generally increase with fertilizer application rate across the observed range (50&#x2013;100&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup>) and varies considerably by country (<xref ref-type="sec" rid="s11">Supplementary Figure S2</xref>). Overall, emission factors appear lower than global default estimates, suggesting that modest fertilizer additions in SSA (50&#x2013;100&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup>) generally produce relatively small N<sub>2</sub>O increases compared to similar rates elsewhere. In fact, at rates above 150&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup>, some studies reported emissions equal to or even lower than those in the 101&#x2013;150&#xa0;kg range (<xref ref-type="fig" rid="F4">Figure 4</xref>), suggesting that yield-scaled emissions may improve with higher fertilization as crop uptake offsets absolute fluxes. While data beyond 150&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup> are limited in our dataset, the available evidence within the 50&#x2013;150&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup> range suggests reasonably predictable linear responses in most contexts, though the risk of disproportionate emission increases remains under certain soil and climatic conditions that favor nitrification and denitrification. Taken together, our findings suggest that agricultural intensification in SSA could proceed with moderate N application rates (&#x223c;50&#x2013;100&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup>) as a potential baseline, avoiding excessive inputs beyond crop requirements. This recommendation is based on observed trends in the reviewed studies and should be considered as guidance rather than a definitive prescription.</p>
</sec>
<sec id="s3-3">
<label>3.3</label>
<title>Crop type and soil characteristics</title>
<p>Although the number of available studies varies across crop types, our synthesis provides important descriptive insights into how N<sub>2</sub>O emissions differ among key agricultural systems in SSA. These patterns, while not intended as formal statistical comparisons, help contextualize the diversity of emission dynamics in the region and identify priority systems for future measurement efforts. Across the dataset, staple crops such as maize, sorghum, and other cereals generally exhibit moderate emissions, with maize-the most extensively studied crop-ranging between 0.1 and 4.29&#xa0;kg N<sub>2</sub>O -N ha<sup>-1</sup>&#xa0;yr<sup>-1</sup>. Despite their wide cultivation, emissions in these systems are highly skewed, with median values (&#x223c;0.5&#xa0;kg N<sub>2</sub>O -N ha<sup>-1</sup>&#xa0;yr<sup>-1</sup>) far below observed maxima, suggesting localized hotspots driven by site-specific management.</p>
<p>Sorghum and traditional cereals remain sparsely studied, though <xref ref-type="bibr" rid="B10">Brummer et al. (2008)</xref> reported emissions up to 1.42&#xa0;g N<sub>2</sub>O -N ha<sup>-1</sup>&#xa0;h<sup>-1</sup> for sorghum under fertilized conditions in Burkina Faso. In contrast, perennial crops such as coffee (1&#x2013;1.9&#xa0;kg N<sub>2</sub>O -N ha<sup>-1</sup>&#xa0;yr<sup>-1</sup>) and tea (0.4&#x2013;3.9&#xa0;kg N<sub>2</sub>O -N ha<sup>-1</sup>&#xa0;yr<sup>-1</sup>) show lower and less variable emissions. Vegetable systems, however, stand out as the most significant sources of cropland N<sub>2</sub>O emissions in SSA, far exceeding other crop types in both intensity and variability. Emissions from these systems ranged from 0.01 to 113.4&#xa0;kg N<sub>2</sub>O -N ha<sup>-1</sup>&#xa0;yr<sup>-1</sup>, often linked to high fertilizer inputs (25&#x2013;750&#xa0;kg&#xa0;N&#xa0;ha<sup>-1</sup>) and intensive irrigation, likely under commercial production. Similar findings have been reported across SSA (<xref ref-type="bibr" rid="B73">Predotova et al., 2010</xref>; <xref ref-type="bibr" rid="B48">Lompo et al., 2012</xref>; <xref ref-type="bibr" rid="B54">Masaka et al., 2014</xref>; <xref ref-type="bibr" rid="B79">Rosenstock et al., 2016</xref>; <xref ref-type="bibr" rid="B44">Kurgat et al., 2018</xref>). While vegetable production is essential for dietary diversity, frequent irrigation and heavy fertilization promote denitrification under oxygen-limited conditions, thereby amplifying N<sub>2</sub>O losses (<xref ref-type="bibr" rid="B74">Qasim et al., 2021</xref>).</p>
<p>Beyond crop type, N<sub>2</sub>O emissions exhibited clear but heterogeneous associations with soil texture (<xref ref-type="fig" rid="F5">Figure 5</xref>). In this first order synthesis, fine-textured soils showed both higher and more variable emissions relative to coarse and medium textures, with several observations exceeding 1&#xa0;kg N<sub>2</sub>O&#x2013;N ha<sup>-1</sup>&#xa0;yr<sup>-1</sup>, particularly under monocropping systems. This pattern is consistent with enhanced denitrification in clay-rich soils under conditions of elevated water-filled pore space (WFPS) and restricted oxygen diffusion (<xref ref-type="bibr" rid="B70">Pelster et al., 2012</xref>; <xref ref-type="bibr" rid="B108">Zhu et al., 2020</xref>; <xref ref-type="bibr" rid="B35">Hickman et al., 2021</xref>). Medium-textured soils, such as loams, exhibited consistently low emissions across cropping systems with minimal variability suggesting a potentially greater capacity to buffer moisture and nitrogen dynamics. Coarse-textured soils (e.g., Lixisols, Inceptisols) generally showed low to moderate emissions, although variability was evident, including relatively higher emissions under monocropping in some cases.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Distribution of mean nitrous oxide (N<sub>2</sub>O) emissions from maize-based cropping systems across USDA soil texture classes (Coarse, Medium and Fine), comparing intercropped and non-intercropped systems. Diamonds indicate median values calculated separately for monocropped and intercropped systems and are shown only for soil texture categories with at least three observations per system.</p>
</caption>
<graphic xlink:href="fenvs-14-1736698-g005.tif">
<alt-text content-type="machine-generated">Scatter plot showing mean nitrous oxide emissions in kilograms per hectare per year across soil texture categories: coarse, medium, and fine. Yellow marks indicate intercropped systems, and green marks indicate monocropped systems. Emissions vary across textures, with more scatter in fine-textured soils.</alt-text>
</graphic>
</fig>
<p>These patterns align with mechanistic understanding whereby coarse soils tend to be carbon-and water-limited, while fine textured soils may become nitrogen- and oxygen-limited under saturation (<xref ref-type="bibr" rid="B70">Pelster et al., 2012</xref>). Although data availability remains uneven across soil texture classes, these results highlight the importance of soil physical properties in shaping N<sub>2</sub>O emission patterns in SSA and provide a useful basis for future targeted measurements and model development in SSA.</p>
</sec>
<sec id="s3-4">
<label>3.4</label>
<title>Climatic representativeness of existing studies for the SSA region</title>
<p>To evaluate the representativeness of study sites to the SSA region, we analyzed the distribution of temperature (Mean Annual Temperature; MAT) and rainfall (Mean Annual Precipitation; MAP) from the reviewed studies against regional climatic averages. We compared the distribution of MAT across two datasets: one representing the entire SSA region (WorldClim gridded dataset) and another specific to the study locations (<xref ref-type="fig" rid="F6">Figure 6</xref>). This comparison helps contextualize the findings and assess their generalizability across the diverse environmental conditions in SSA. The pathways of N<sub>2</sub>O production vary significantly across different climatic zones due to differences in temperature and precipitation.</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>Distribution of mean annual temperature (MAT) from gridded datasets (WorldClim, upper panel) and observed field temperatures extracted directly from reviewed field studies from Sub-Saharan Africa (SSA, lower panel). Density curves reveal multimodal patterns in MAT. Vertical lines mark the mode (red dotted), mean (blue dashed), and median (continuous green), highlighting skew and asymmetry in temperature distributions relevant for nitrous oxide emission modeling. Mode represents peak of density curve (not histogram).</p>
</caption>
<graphic xlink:href="fenvs-14-1736698-g006.tif">
<alt-text content-type="machine-generated">Two histograms compare Gridded MAT and SSA study data temperature distributions. The top histogram in blue shows a median of 20.6&#xB0;C, mean of 21.9&#xB0;C, and mode of 27.7&#xB0;C. The bottom histogram in orange shows a median of 23.1&#xB0;C, mean of 23.6&#xB0;C, and mode of 29.5&#xB0;C. Density is on the y-axis, and temperature in degrees Celsius is on the x-axis.</alt-text>
</graphic>
</fig>
<p>MAT from gridded datasets exhibits a bimodal distribution, with a dominant mode at 19.4&#xa0;&#xb0;C and a secondary peak near 27&#xa0;&#xb0;C&#x2013;28&#xa0;&#xb0;C (<xref ref-type="fig" rid="F6">Figure 6</xref>, top panel), indicating a predominance of cooler highland or subtropical sites and fewer hotter lowland or semi-arid locations. Field reported MAT is also bimodal, but with notable differences (<xref ref-type="fig" rid="F6">Figure 6</xref>, bottom panel). The dominant mode is higher, at 22.1&#xa0;&#xb0;C, and the second peak (&#x223c;28&#xa0;&#xb0;C&#x2013;29&#xa0;&#xb0;C) is less prominent than in the MAT data. The observed distribution appears shifted toward warmer temperatures, and the mean and median values are slightly higher than those of the gridded data. Despite overall agreement in the primary temperature range (&#x2248;21&#xa0;&#xb0;C&#x2013;23&#xa0;&#xb0;C), both datasets underrepresent sites with MAT &#x3e;25&#xa0;&#xb0;C, highlighting a spatial bias toward moderate-temperature regions, where studies are concentrated despite evidence of higher N<sub>2</sub>O emissions in warmer environments (<xref ref-type="bibr" rid="B79">Rochette et al., 2016</xref>).</p>
<p>During the growing season, high-intensity rainfall often leads to increased emissions by creating anaerobic conditions that enhance denitrification. Conversely, extended dry periods suppress emissions by limiting microbial activity and reducing substrate availability but conversely increase emission pulses as the substrate becomes available to microbes in a rewetting flush (<xref ref-type="bibr" rid="B45">Leitner et al., 2017</xref>). To evaluate how well field studies represent actual growing season rainfall patterns across SSA, we compared mean rainfall values from 16 study locations (Annex 5) for which we could geolocate sites to the NAME_2 or NAME_3 administrative level, using CHIRPS gridded estimates (&#x223c;5&#xa0;km resolution). We extracted CHIRPS rainfall estimates specifically for the growing season months between 2000 and 2020, relevant to each study location. Our comparison revealed a consistent pattern: field-reported rainfall values were generally higher than corresponding gridded data for each location, with some sites showing differences of several hundred millimeters (<xref ref-type="fig" rid="F7">Figure 7</xref>). This is consistent with previous studies showing that point measurements capture localized, high-intensity convective events that gridded satellite products tend to smooth out (<xref ref-type="bibr" rid="B22">Dinku et al., 2010</xref>; <xref ref-type="bibr" rid="B51">Maidment et al., 2017</xref>; <xref ref-type="bibr" rid="B85">Sun et al., 2018</xref>). In addition, discrepancies may arise from reporting practices: field studies often report rainfall for the exact experimental period, whereas gridded datasets reflect standardized seasonal totals.</p>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption>
<p>Comparison of mean growing season rainfall (mm) between gridded data (top panel) and field studies (bottom panel) for Sub-Saharan Africa (SSA) study sites. Field values represent mean rainfall reported directly in the studies reviewed. Gridded estimates were extracted from CHIRPS-high-resolution (&#x223c;0.05&#xb0;). Gridded rainfall was spatially matched to the study site coordinates and filtered by the relevant growing season for each location to better reflect actual crop-relevant conditions. Vertical lines represent the mean (solid), median (dashed), and mode (dotted) values within each dataset.</p>
</caption>
<graphic xlink:href="fenvs-14-1736698-g007.tif">
<alt-text content-type="machine-generated">Density plots compare Gridded MAP and SSA study data on mean rainfall. The Gridded MAP shows a skewed distribution, mostly below 500 mm, in blue. The SSA study data, in orange, has peaks around 500 and 1,000 mm. Dashed and solid lines represent mean, median, and mode. The legend indicates colors and line styles.</alt-text>
</graphic>
</fig>
<p>It is also possible that gridded data may underestimate site-specific rainfall availability particularly during extreme climate years (e.g., drought in 2022-2023 or El Nino driven excess rainfall in 2024&#x2013;2025). These mismatches are critical for N<sub>2</sub>O emissions research, as rainfall governs soil moisture dynamics and associated nitrification and denitrification processes. Furthermore, studies suggest that increasing rainfall variability under climate change may further reduce the representativeness of gridded products (<xref ref-type="bibr" rid="B42">Kotir, 2011</xref>; <xref ref-type="bibr" rid="B98">Waha et al., 2013</xref>). These discrepancies reflect spatial averaging in satellite-derived data versus localized microclimatic conditions captured by field observations, underscoring the importance of integrating site-level measurements into N<sub>2</sub>O emission modeling frameworks.</p>
<p>Rainfall trends were assessed at 14 study sites with &#x2265;20 years of data (Annex 6) to evaluate climate-driven changes in precipitation. Most sites showed increasing growing season rainfall over the past 2&#xa0;decades, with more than half indicating rising trends at the 5% and 1% significance levels (p &#x3c; 0.05; <xref ref-type="sec" rid="s11">Supplementary Figure S3</xref>). This shift toward wetter conditions could boost agricultural productivity but also increases the possibility of higher N<sub>2</sub>O emissions due to elevated soil moisture, increasing denitrification potential and/or increasing leaching of N from soils followed by downstream environmental impacts (<xref ref-type="bibr" rid="B65">Omotoso and Omotayo, 2024</xref>). For example, the Dano station in Burkina Faso exhibited a significant positive slope of approximately &#x2b;1.5&#xa0;mm/year, translating to a 30&#xa0;mm increase in annual rainfall over two decades-sufficient to trigger N<sub>2</sub>O pulses under saturated soil conditions. Conversely, only two sites, South Africa&#x2019;s Ehlanzeni and Zimbabwe&#x2019;s Chitungwiza, reported decreasing rainfall trends, indicating specific climate concerns.</p>
</sec>
</sec>
<sec id="s4">
<label>4</label>
<title>Future research directions</title>
<sec id="s4-1">
<label>4.1</label>
<title>Guidelines for data collection and data and metadata reporting to enhance data usability</title>
<p>Despite limited studies in data-poor regions, many demonstrate strong documentation and methodological transparency, including chamber details, calibration procedures, and flux calculation equations, enhancing data usability. A key strength of these studies is their grounding in local contexts and collaboration with African research institutions such as IITA (International Institute of Tropical Agriculture), CIMMYT (International Maize and Wheat Improvement Center), ILRI (International Livestock Research Institute) and national systems, reflecting a commitment to capacity building and long-term research infrastructure in SSA (<xref ref-type="bibr" rid="B57">Merbold et al., 2021</xref>). Many studies report spatial coordinates and climate variables&#x2014;especially rainfall and temperature&#x2014;critical for interpreting N<sub>2</sub>O emissions given biases in gridded datasets, highlighting the value of initiatives like <xref ref-type="bibr" rid="B87">Tahmo (2025)</xref>.</p>
<p>Key gaps remain. Many studies omit important drivers such as soil moisture, micrometeorological data, soil texture, organic matter, and microbial activity (<xref ref-type="bibr" rid="B18">Davidson and Kanter, 2014</xref>). Soil moisture, in particular, is rarely directly measured and is often only inferred from seasonal rainfall patterns, through statistical correlations with N<sub>2</sub>O emissions or reported as water-filled pore space (WFPS) in a limited number of studies. For example, WFPS values reported ranged from 5% to 10% (<xref ref-type="bibr" rid="B92">Tully et al., 2023</xref>) to over 70% (<xref ref-type="bibr" rid="B5">Baggs et al., 2006</xref>), illustrating site-to-site variation and the limited availability of continuous measurements. Fertilizer management details-type, timing, and application-are often missing, limiting cross-study comparisons and assessment of fertilizer-induced emissions (<xref ref-type="bibr" rid="B82">Shcherbak et al., 2014</xref>).</p>
<p>Standardized protocols for chamber measurements, soil properties, and detailed fertilizer reporting (<xref ref-type="bibr" rid="B12">Butterbach-Bahl et al., 2016</xref>; <xref ref-type="bibr" rid="B19">de Klein et al., 2020</xref>), inclusion of zero-N plots, yield-and input-scaled metrics, and long-term data sharing through FAIR (Findable, Accessible, Interoperable, Reusable)-compliant repositories and proper metadata documentation (<xref ref-type="bibr" rid="B27">Fluxnet, 2025</xref>) would improve data quality and comparability.</p>
<p>Kenya has led N<sub>2</sub>O research in SSA, with studies in 16 of 19 years (2000&#x2013;2018) covering diverse maize systems and following rigorous protocols, providing a strong basis for model calibration. Hotter regions (MAT &#x3e;25&#xa0;&#xb0;C), such as the Sahel, northeastern Kenya, eastern Ethiopia, and Sudan, remain underrepresented, risking underestimation of emissions. Future work should target these zones to capture SSA&#x2019;s full climatic diversity.</p>
</sec>
<sec id="s4-2">
<label>4.2</label>
<title>Suggestions on strengthening research of mitigation practices: reporting strengths and gaps</title>
<p>Beyond quantifying N<sub>2</sub>O emissions, several studies tested mitigation practices relevant to local farming, including fertilizer rate variations, organic amendments, integrated soil fertility management, and residue and tillage management. Tillage consistently increased N<sub>2</sub>O emissions, with conventional and minimum tillage showing higher fluxes than no-tillage (<xref ref-type="bibr" rid="B5">Baggs et al., 2006</xref>; <xref ref-type="bibr" rid="B96">Vilakazi et al., 2021</xref>; <xref ref-type="bibr" rid="B3">Alasinrin et al., 2025</xref>). Maize stover addition, while not improving yields, also elevated emissions, illustrating trade-offs in organic residue management (<xref ref-type="bibr" rid="B106">Zheng et al., 2019</xref>).</p>
<p>Integrated soil fertility management combining organic and mineral inputs showed that rainfall timing and soil moisture strongly influence N<sub>2</sub>O emissions (<xref ref-type="bibr" rid="B41">Kimetu et al., 2007</xref>; <xref ref-type="bibr" rid="B31">Githongo et al., 2022</xref>). Despite these contributions, key gaps include: (1) reliance on seasonal totals or small-plot studies, (2) limited on-farm testing-only a few, like <xref ref-type="bibr" rid="B100">Wanyama et al. (2018)</xref>, incorporate on-farm or participatory testing, and (3) few measurements of underlying mechanisms such as mineral N pools, isotopic data or microbial activity.</p>
</sec>
<sec id="s4-3">
<label>4.3</label>
<title>Future research priorities</title>
<p>In this section, we bring together the findings of this study to outline future research priorities for the SSA region.</p>
<sec id="s4-3-1">
<label>4.3.1</label>
<title>Research priority 1: improving model representation through better input data quality for SSA</title>
<p>Global process-based models such as DeNitrification DeComposition (DNDC) are increasingly used to estimate N<sub>2</sub>O emissions (<xref ref-type="bibr" rid="B29">Gaillard et al., 2018</xref>) but accurate simulations are limited by sparse, site-specific calibration data and the complexity of smallholder farming systems in SSA. Studies in Kenya show that DNDC simulates annual emissions and yields well but underestimates daily fluxes and short-term emission events, with systematic biases in soil moisture, temperature, and crop growth (<xref ref-type="bibr" rid="B50">Macharia et al., 2021</xref>; <xref ref-type="bibr" rid="B61">Musafiri et al., 2021</xref>). Closer integration of field experiments and modeling is needed to improve local calibration and policy relevance. Future models should better represent SSA-specific drivers, including dry&#x2013;wet cycles, organic amendments, intercropping, shifting cultivation, and soil heterogeneity. Data-model integration platforms, open high-frequency time-series data, and standardized data-sharing protocols are critical for improving predictive capacity and informing sustainable fertilizer policies.</p>
</sec>
<sec id="s4-3-2">
<label>4.3.2</label>
<title>Research priority 2: expanding N<sub>2</sub>O observations and multifactorial experiments in SSA</title>
<p>Reducing bias in EF estimates requires expanding N<sub>2</sub>O measurements to encompass diverse cropping systems and management intensities across SSA, particularly in underrepresented systems where these are crucial for nutrition, and horticultural systems in humid and semi-humid regions. Most experiments in SSA have primarily examined the impact of single variables such as fertilizer rate or seasonal/application timing. However, future work must move toward multifactorial designs that test interactions between climate factors (e.g., warming, drought, extreme rainfall) and management practices (e.g., irrigation, organic amendments, tillage). While studies as <xref ref-type="bibr" rid="B15">Chikowo et al. (2007)</xref>, <xref ref-type="bibr" rid="B63">Ntinyari et al. (2023)</xref>, and <xref ref-type="bibr" rid="B92">Tully et al. (2023)</xref> offer valuable insights, integrated assesments of combined environmental and agronomic effects remain scarce.</p>
<p>Microbial processes are central to N<sub>2</sub>O production (<xref ref-type="bibr" rid="B80">Schreiber et al., 2012</xref>; <xref ref-type="bibr" rid="B11">Butterbach-Bahl et al., 2013</xref>), yet microbial data remain largely absent in SSA field research, limiting mechanistic understanding of emissions. Integrating isotopic, functional gene, and molecular approaches analysis (e.g., qPCR, metagenomics, and stable isotope probing) would greatly improve insight into N cycling pathways (<xref ref-type="bibr" rid="B30">Gallarotti et al., 2021</xref>). Scarce incubation and laboratory studies further limit the ability to validate field observations. Future research should adopt systems-level approaches linking emissions to nitrogen balances, NUE (nitrogen use efficiency), socio-economic tradeoffs, productivity, profitability, and resilience outcomes to enhance policy-relevance.</p>
</sec>
<sec id="s4-3-3">
<label>4.3.3</label>
<title>Research priority 3: observation of legacy effects, control plot emissions and fallow period measurements</title>
<p>Improving EF accuracy in SSA requires accounting for legacy effects, control plot emissions, and fallow dynamics, as unfertilized plots can emit substantial N<sub>2</sub>O due to residual soil nitrogen and organic matter mineralization, sometimes exceeding fertilized treatments (<xref ref-type="bibr" rid="B53">Mapanda et al., 2011</xref>; <xref ref-type="bibr" rid="B33">Hickman et al., 2014</xref>; <xref ref-type="bibr" rid="B64">Nyamadzawo et al., 2014</xref>; <xref ref-type="bibr" rid="B4">Atakora et al., 2019</xref>). <xref ref-type="bibr" rid="B94">Vanlauwe et al. (2020)</xref>; highlight the importance of accounting for background fertility in smallholder N<sub>2</sub>O dynamics, while <xref ref-type="bibr" rid="B20">Della Chiesa et al. (2019)</xref> show that background emissions can comprise a significant portion of cropland fluxes. Global modeling indicates that past fertilization affects emissions beyond the active crop season (<xref ref-type="bibr" rid="B75">Qian et al., 2025</xref>), and fallow-period emissions, often unmonitored, can substantially contribute to cumulative N<sub>2</sub>O losses.</p>
<p>Fallow and off-season emissions, driven mainly by soil organic matter mineralization after rewetting, are critical for accurate annual N<sub>2</sub>O accounting (<xref ref-type="bibr" rid="B13">Cardinael et al., 2024</xref>; <xref ref-type="bibr" rid="B81">Shang et al., 2024</xref>). About 28% of the studies we reviewed indicate that non-cropping periods can contribute significantly, often between 10% and 20% to annual N<sub>2</sub>O emissions, primarily due to mineralization and rainfall-induced pulses. Post-harvest and off-season emissions in Mali, Ghana, and Zimbabwe demonstrate that rainfall-driven rewetting can trigger significant N<sub>2</sub>O pulses, even without fertilization, highlighting overlooked contributions (<xref ref-type="bibr" rid="B66">Ortiz-Gonzalo et al., 2018</xref>; <xref ref-type="bibr" rid="B83">Shumba et al., 2023</xref>; <xref ref-type="bibr" rid="B107">Zheng et al., 2023</xref>). Soil texture strongly shapes these dynamics: fine-textured soils retain moisture, sustaining denitrification and episodic N<sub>2</sub>O pulses, whereas coarse soils drain quickly but can produce short-lived peaks after rainfall. Limited year-round measurements suggest dry-season and post-drought rewetting emissions are non-negligible, yet remain poorly characterized across SSA soils, highlighting a critical knowledge gap for accurate emission factor estimates.</p>
</sec>
<sec id="s4-3-4">
<label>4.3.4</label>
<title>Research priority 4: assessing spatial suitability and effectiveness of mitigation practices in SSA</title>
<p>Evidence from global meta-analyses and field trials suggests that the effectiveness of N<sub>2</sub>O mitigation practices varies greatly across agroecological zones, soil types, and farming systems (<xref ref-type="bibr" rid="B32">Grados et al., 2022</xref>). Fertilizer management strategies such as optimized timing, reduced rates, and use of stabilized or slow-release fertilizers can lower emissions, but outcomes are highly context dependent. Advanced tools like N<sub>2</sub>O stable isotope site preference analysis can help identify emission pathways and evaluate mitigation effectiveness (<xref ref-type="bibr" rid="B103">Yu et al., 2020</xref>). Adoption of mitigation practices ultimately depends on socioeconomic feasibility, including labor availability, profitability, access to inputs, and policy support for smallholder farmers (<xref ref-type="bibr" rid="B84">Steenwerth et al., 2014</xref>).</p>
<p>Despite strong biophysical mitigation potential, adoption of N<sub>2</sub>O-reducing practices in SSA remains low due to socioeconomic bottlenecks such as inconsistent policies, financial constraints, lack of training and support and limited access to alternative fertilizers (<xref ref-type="bibr" rid="B2">Aghabeygi et al., 2024</xref>; <xref ref-type="bibr" rid="B26">Finizola e Silva et al., 2024</xref>; <xref ref-type="bibr" rid="B69">Pedersen et al., 2024</xref>). Agricultural extension and advisory services play a major role in enhancing farmer adaptation, resilience, implementation of drought tolerant or improved varieties, and agricultural management practices (<xref ref-type="bibr" rid="B67">Ou&#xe9;draogo et al., 2019</xref>; <xref ref-type="bibr" rid="B1">Abegunde et al., 2020</xref>; <xref ref-type="bibr" rid="B68">Oyawole et al., 2020</xref>; <xref ref-type="bibr" rid="B104">Zakaria et al., 2020</xref>; <xref ref-type="bibr" rid="B26">Finizola e Silva et al., 2024</xref>). A key research priority is to generate empirical evidence on N<sub>2</sub>O emissions under agroecological practices which are widely promoted for sustainability but remain poorly evaluated as climate mitigation strategies.</p>
</sec>
</sec>
</sec>
<sec sec-type="conclusion" id="s5">
<label>5</label>
<title>Conclusion</title>
<p>As Sub-Saharan Africa moves toward more climate-resilient and sustainable food systems, understanding the interactions between management practices, environmental conditions, and N<sub>2</sub>O emissions is crucial. While research on N<sub>2</sub>O emissions has increased in recent decades, it remains highly uneven across SSA. This spatial bias limits our ability to develop regionally nuanced emission factors and mitigation strategies. Across the reviewed studies, N<sub>2</sub>O emissions were found to vary widely, reflecting the complex interplay of multiple factors. Although some categories had limited replication, nitrogen input rates, crop types, climate conditions, and measurement duration contributed to this variability. Estimated emission factors (EFs) across croplands were generally lower than the IPCC&#x2019;s 1% default value. Even when calculated conservatively given the scarcity of unfertilized controls, most reported EFs fall below 1%, with median values around 0.4%&#x2013;0.7%. While some intensively fertilized systems exceed 2%&#x2013;4%, low-input smallholder systems consistently showed values near zero. Moreover, methodological inconsistencies including differences in sampling frequency, fertilizer rates, and reporting units combined with the limited availability of long-term, year-round N<sub>2</sub>O flux data, restrict cross-study comparability in SSA. Research efforts should prioritize high-frequency flux measurements, better integration of micrometeorological and soil biogeochemical data, and standardized reporting of agricultural practices. There is also an emerging need to investigate the role of agroecological approaches and climate-smart practices in reducing emissions. Future studies should explore these pathways while leveraging new tools like isotopic measurements, remote sensing, and process-based modeling to quantify and mitigate fertilizer-induced emissions. This synthesis provides a foundation for advancing both scientific understanding and practical efforts to manage N<sub>2</sub>O emissions in SSA agriculture, aligning productivity goals with climate commitments.</p>
</sec>
</body>
<back>
<sec sec-type="author-contributions" id="s6">
<title>Author contributions</title>
<p>TO: Methodology, Data curation, Conceptualization, Writing &#x2013; original draft, Writing &#x2013; review and editing. MB: Writing &#x2013; original draft, Conceptualization. PA: Writing &#x2013; review and editing, Data curation. MT: Writing &#x2013; review and editing. GZ: Writing &#x2013; original draft, Methodology, Writing &#x2013; review and editing. HG: Methodology, Writing &#x2013; review and editing, Writing &#x2013; original draft. SL: Writing &#x2013; review and editing, Supervision. CO: Writing &#x2013; review and editing. WN: Writing &#x2013; review and editing, Methodology. KO: Writing &#x2013; review and editing. AO: Writing &#x2013; review and editing, Supervision. RN: Supervision, Writing &#x2013; review and editing. GO: Writing &#x2013; review and editing. JS: Funding acquisition, Writing &#x2013; review and editing, Supervision. EH: Supervision, Conceptualization, Writing &#x2013; review and editing, Funding acquisition, Writing &#x2013; original draft.</p>
</sec>
<ack>
<title>Acknowledgements</title>
<p>The authors wish to thank the Swiss Data Science Center for the support for this study and acknowledge the contribution of Meklit Chernet for ideation in the initial stages of the review and assistance with gridded data acquisition for the analysis.</p>
</ack>
<sec sec-type="COI-statement" id="s8">
<title>Conflict of interest</title>
<p>The author(s) declared that this work was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="ai-statement" id="s9">
<title>Generative AI statement</title>
<p>The author(s) declared that generative AI was not used in the creation of this manuscript.</p>
<p>Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.</p>
</sec>
<sec sec-type="disclaimer" id="s10">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec sec-type="supplementary-material" id="s11">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fenvs.2026.1736698/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fenvs.2026.1736698/full&#x23;supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Image3.jpeg" id="SM1" mimetype="application/jpeg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Image1.jpeg" id="SM2" mimetype="application/jpeg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Image2.jpeg" id="SM3" mimetype="application/jpeg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<fn-group>
<fn fn-type="custom" custom-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/284983/overview">Wakene Negassa</ext-link>, The James Hutton Institute, United Kingdom</p>
</fn>
<fn fn-type="custom" custom-type="reviewed-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/128765/overview">Ingo Sch&#xf6;ning</ext-link>, Max Planck Institute for Biogeochemistry, Germany</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/291387/overview">Juan Manuel Pi&#xf1;eiro Guerra</ext-link>, University of Buenos Aires, Argentina</p>
</fn>
</fn-group>
<fn-group>
<fn fn-type="abbr" id="abbrev1">
<label>Abbreviations:</label>
<p>SSA, Sub-Saharan Africa; GHG, greenhouse gas; GWP, global warming potential; IPCC, Intergovernmental Panel for Climate Change; N, nitrogen; NUE, nitrogen use efficiency; PRISMA, Preferred Reporting Items for Systematic Reviews and Meta-Analyses; MAT, mean annual temperature; MAP, mean annual precipitation; SOC, soil organic carbon; HTML, Hypertext Markup Language; EF, Emission Factors; WFPS, water-filled pore space; USDA, U.S. Department of Agriculture; IITA, International Institute of Tropical Agriculture; CIMMYT, International Maize and Wheat Improvement Center; ILRI, International Livestock Research Institute; CT, conventional; MT, minimum tillage; NT, no-tillage; DNDC, DeNitrification DeComposition.</p>
</fn>
</fn-group>
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