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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Environ. Sci.</journal-id>
<journal-title>Frontiers in Environmental Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Environ. Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-665X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">784751</article-id>
<article-id pub-id-type="doi">10.3389/fenvs.2021.784751</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Environmental Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The Interannual Variability of the Fall Size of Young-of-The-Year Chub (Squalius cephalus): Influence of Phenology, Growth Patterns and Abiotic Factors</article-title>
<alt-title alt-title-type="left-running-head">Logez et&#x20;al.</alt-title>
<alt-title alt-title-type="right-running-head">Yoy Chub Growth</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Logez</surname>
<given-names>Maxime</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1337029/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Bounket</surname>
<given-names>Bernadette</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Gibert</surname>
<given-names>Pierre</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Carrel</surname>
<given-names>Georges</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Diouloufet</surname>
<given-names>Virginie</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Colombet</surname>
<given-names>Xavier</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1504770/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Morat</surname>
<given-names>Fabien</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<label>
<sup>1</sup>
</label>INRAE, RECOVER, Aix Marseille Univ, <addr-line>Aix-en-Provence</addr-line>, <country>France</country>
</aff>
<aff id="aff2">
<label>
<sup>2</sup>
</label>INRAE, UR RiverLy, <addr-line>Villeurbanne Cedex</addr-line>, <country>France</country>
</aff>
<aff id="aff3">
<label>
<sup>3</sup>
</label>PSL&#x20;Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Universit&#xe9; de Perpignan, <addr-line>Perpignan</addr-line>, <country>France</country>
</aff>
<aff id="aff4">
<label>
<sup>4</sup>
</label>Laboratoire&#x20;d&#x2019;Excellence Corail, <addr-line>Perpignan</addr-line>, <country>France</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1109035/overview">Maria Ilh&#xe9;u</ext-link>, University of Evora, Portugal</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/741900/overview">Jos&#xe9; Maria Santos</ext-link>, University of Lisbon, Portugal</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1085150/overview">Jeyaraj Antony Johnson</ext-link>, Wildlife Institute of India, India</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Maxime Logez, <email>maxime.logez@inrae.fr</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Freshwater Science, a section of the journal Frontiers in Environmental Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>09</day>
<month>12</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>9</volume>
<elocation-id>784751</elocation-id>
<history>
<date date-type="received">
<day>28</day>
<month>09</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>22</day>
<month>10</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2021 Logez, Bounket, Gibert, Carrel, Diouloufet, Colombet and Morat.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Logez, Bounket, Gibert, Carrel, Diouloufet, Colombet and Morat</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these&#x20;terms.</p>
</license>
</permissions>
<abstract>
<p>Long-term surveys confirm the rapidity of environmental and biological changes undergone by endangered species but that also concerned relatively &#x201c;tolerant&#x201d; species, especially common rheophilic species such as European chub (<italic>Squalius cephalus</italic>, Linnaeus 1758). As many organisms, fish are highly vulnerable during their first life stages. Body size is a determinant factor for ecosystem functioning and for fish to survive to predators or to winter conditions. While numerous studies has already demonstrated the large variability of autumnal size of fish hatched during the year, few have focused on the factors explaining these interannual variations and on the growth patterns underlying these distributions. Using otoliths of young-of-the-year (YOY), we studied how the interannual variability in fall sizes of chub might be related to varying phenology, temperature, hydrology and growth patterns. YOY were sampled in three sections of the same reach of the Rh&#xf4;ne River with contrasted hydrological regime: an artificial deep lotic channel (the tailrace of Boll&#xe8;ne), a bypassed section with both lotic and lentic areas (former river channel before dam construction) and a reservoir with lentic deep waters. Sampling was performed on each sector during two thermally distinct years. Temperature had an important effect on both phenology and growth rate but it was not expressed similarly among river sections. Fish hatched earlier in the warmer year. Fish sizes were positively correlated with growing degree-days, but with distinct relationships between years and sections. The growth was faster in the warmer year, and in the warmer section, but differences in growth patterns varied between sections. In the bypassed section, the difference was slight, almost not significant, even if temperatures were very different between the 2&#xa0;years considered. Autumnal variations in size could be explained either by an earlier phenology or by a faster growth due to higher temperatures occurring during the final part of the growing period. Our results were in accordance with general theory&#x2019;s predictions relating individual growth to temperature, but they also showed that other factors might mitigate the influence of temperature on fish early life stages.</p>
</abstract>
<kwd-group>
<kwd>Leuciscidae</kwd>
<kwd>logistic model</kwd>
<kwd>temperature</kwd>
<kwd>hatching</kwd>
<kwd>otoliths</kwd>
<kwd>large regulated river</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Organism size has been widely studied, because of its impact on organism internal functioning (metabolism, thermoregulation of ectotherms) (<xref ref-type="bibr" rid="B78">West and Brown, 2005</xref>), on the life-history traits (survival, longevity, fecundity) (<xref ref-type="bibr" rid="B66">Roff, 1992</xref>; <xref ref-type="bibr" rid="B79">Winemiller and Rose, 1992</xref>), on ecology (ontogenetic shift in habitat use) (<xref ref-type="bibr" rid="B77">Werner and Gilliam, 1984</xref>), and more broadly because of the consequences of organism size on ecosystem functioning (food web) (<xref ref-type="bibr" rid="B2">Barnes et&#x20;al., 2010</xref>).</p>
<p>The &#x201c;bigger is better hypothesis&#x201d; suggest the body size is determinant for young fish survival (<xref ref-type="bibr" rid="B43">Miller et&#x20;al., 1988</xref>) and particularly for the winter survival of fish larvae and juveniles (<xref ref-type="bibr" rid="B69">Sogard, 1997</xref>). Indeed, the acquisition of a &#x201c;refuge size&#x201d; allows to escape to predation and to be less sensible at environmental stressors (e.g. temperature, starvation) (<xref ref-type="bibr" rid="B69">Sogard, 1997</xref>; <xref ref-type="bibr" rid="B26">Hurst, 2007</xref>). For young-of-the-year (YOY) fish, the recruitment depends to first winter survival (<xref ref-type="bibr" rid="B26">Hurst, 2007</xref>). However, YOY generally show a large variability in size at the end of the growing period (e.g. <xref ref-type="bibr" rid="B51">Nunn et&#x20;al., 2003</xref>). The knowledge of causes of this size variability (differences in spawning date or in the growth capacity, for example) is crucial as the survival of YOY at the first winter influence the population dynamics.</p>
<p>Long-term surveys have revealed high variation of freshwater fish body size at the same location, but between years (<xref ref-type="bibr" rid="B51">Nunn et&#x20;al., 2003</xref>; <xref ref-type="bibr" rid="B53">2010</xref>). Between 1984 and 1998, <xref ref-type="bibr" rid="B51">Nunn et&#x20;al. (2003)</xref> have observed important variation in roach (<italic>Rutilus rutilus</italic> (Linnaeus, 1758)), dace (<italic>Leuciscus leuciscus</italic> (Linnaeus, 1758) and chub (<italic>Squalius cephalus</italic> (Linnaeus, 1758)) sizes, especially for young of the year. Abiotic factors such as discharge, water temperature and climate regime (<xref ref-type="bibr" rid="B30">Kone&#x10d;n&#xe1; et&#x20;al., 2009</xref>; <xref ref-type="bibr" rid="B53">Nunn et&#x20;al., 2010</xref>) and biotic factors such as species phenology have been suggested to influence YOY size (<xref ref-type="bibr" rid="B53">Nunn et&#x20;al., 2010</xref>). Indeed, temperature can influence the growth of YOY (through the metabolism) but also fish species phenology. In warmer conditions, fish would spawn earlier (e.g. <xref ref-type="bibr" rid="B53">Nunn et&#x20;al., 2010</xref>) which could potentially lead to a longer growing period than during cooler years, leading to larger YOY in early winter.</p>
<p>While numerous studies have focused on endangered species and their potential loss regarding global changes (<xref ref-type="bibr" rid="B9">Ceballos et&#x20;al., 2020</xref>) and/or the multiple anthropogenic pressures impacting temperate rivers (<xref ref-type="bibr" rid="B17">Dudgeon, 2010</xref>; <xref ref-type="bibr" rid="B22">Harrison et&#x20;al., 2018</xref>), it is also important to focus on &#x201c;common species.&#x201d; Indeed, the analysis of long-term surveys confirms the rapidity of environmental and biological changes, that also concernced relatively &#x201c;tolerant&#x201d; species, especially rheophilic species (<xref ref-type="bibr" rid="B46">Mueller et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B67">Santos et&#x20;al., 2021</xref>). This is the case of the European chub, a widespread species in Europe and a dominant leuciscid in French rivers. Chub is a potamodromous, lithophilic species that can live in a wide variety of habitats (lentic or lotic), even altered (<xref ref-type="bibr" rid="B61">Philippart and Vranken, 1983</xref>; <xref ref-type="bibr" rid="B12">Cowx et&#x20;al., 2004</xref>), and that can move on great distances during the spawning period to find gravel-bed spawning grounds in lotic areas (<xref ref-type="bibr" rid="B18">Fredrich et&#x20;al., 2003</xref>; <xref ref-type="bibr" rid="B4">Benitez and Ovidio, 2018</xref>). Chub larvae and YOY are mostly observed in groups in shallow shoreline habitats of lotic channels (<xref ref-type="bibr" rid="B41">Mann, 1976</xref>; <xref ref-type="bibr" rid="B11">Copp and Pe&#x148;&#xe1;z, 1988</xref>).</p>
<p>Our current knowledge on the spawning periodicity, growth patterns and size of YOY is mostly inferred from surveys of 0&#x2b; year size distributions (e.g. <xref ref-type="bibr" rid="B44">Mills and Mann, 1985</xref>; <xref ref-type="bibr" rid="B54">Nunn et&#x20;al., 2007</xref>), but only rare studies have compared the growth pattern of YOY under different hydrological regimes and thermal contexts. Using otoliths collected on YOY chub, we aimed to assess the phenology and the growth pattern of YOY in three nearby sections of the same reach that are typical of the run-of-river hydropower development along the Rh&#xf4;ne River: bypassed section, tailrace and reservoir. Fish were studied during two thermally contrasted years (2013: cool and 2015: warm). Our objectives were to estimate the hatching date of eggs and to model the fish daily growth curves (with a Bayesian hierarchical non-linear model), in order to assess how YOY growth could be related to phenological shifts and/or to environmental conditions (temperature).</p>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>Materials and Methods</title>
<sec id="s2-1">
<title>Study Area</title>
<p>The reach of Caderousse is located in the middle of the lower Rh&#xf4;ne and combines the hydraulic components of two hydropower schemes: Donz&#xe8;re-Mondragon and Caderousse. The headrace of the Donz&#xe8;re-Mondragon hydroelectric power plant has been receiving cooling water from the Tricastin nuclear power plant since 1980. After complete mixing of the heated effluent downstream of the hydroelectric plant, the mean daily temperature increment of the tailwater was &#x2b;1.6&#xb0;C for the period 2002&#x2013;2006 (<xref ref-type="bibr" rid="B23">Hartmann et&#x20;al., 2014</xref>).</p>
<p>The reach of Caderousse includes three main contrasting sections (<xref ref-type="fig" rid="F1">Figure&#x20;1</xref>). First, the tailrace of Boll&#xe8;ne (TAIL), an artificialized deep lotic channel with a trapezoidal cross-section with alternating concrete and riprap riverbanks. Its flow is controlled by the Boll&#xe8;ne hydroelectric power plant. The bypassed section (BPS) corresponds to the old river channelized during the 19th century with low submersible dikes. It has both lentic and lotic areas and is characterised by the presence of a riparian forest, residual backwaters. The third section is the reservoir (RES) created by the Caderousse dam. This is a large area of lentic, deep waters and the shoreline habitats mainly consist of ripraps and large macrophyte&#x20;beds.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Map of the Caderousse reach on the lower Rh&#xf4;ne River. Chub were sampled in the bypassed section (<italic>BPS</italic>), in the reservoir (<italic>RES</italic>) of the Caderousse dam and power plant, and in the tailrace (<italic>TAIL</italic>) of the Boll&#xe8;ne power plant. The <italic>gray areas</italic> represent the sampling sites. The <italic>arrows</italic> locate the four gauging stations and the stars locate the hobo thermometers.</p>
</caption>
<graphic xlink:href="fenvs-09-784751-g001.tif"/>
</fig>
<p>The <italic>Compagnie Nationale du Rh&#xf4;ne</italic> provided us with the daily flow data of the Rh&#xf4;ne River recorded near Pont-Saint-Esprit for the BPS and near Chusclan for the RES. The daily discharge in the tailrace was obtained by subtracting from the total river flow measured in the upstream gauging station near Viviers, the instream flow of the bypassed section near Saint-Montan (<xref ref-type="fig" rid="F1">Figure&#x20;1</xref>). The daily average temperature of the Rh&#xf4;ne waters was obtained from data recorded every 15&#xa0;min by HOBO<sup>&#xae;</sup> thermometers set up in the three sections.</p>
</sec>
<sec id="s2-2">
<title>Fish Sampling</title>
<p>YOY chub were collected from Sept. 24 to 26, 2013 and from Sept. 14 to 17, 2015. Fish were sampled by electrofishing using the point abundance sampling method (<xref ref-type="bibr" rid="B48">Nelva et&#x20;al., 1979</xref>), a strategy suitable to take into account the habitat diversity on both sides of each section. Following eugenol anaesthesia, they were put on ice, and kept frozen until dissection. Prior to dissection, size (total length - TL) was measured to the nearest millimetre. In 2013 and 2015, 139 YOY (81 in the BPS, 41 in the RES, and 17 in the TAIL) and 124 YOY (44 for BPS, 45 in the RES, and 35 in the TAIL) were recorded respectively. The size classes (TL) of the collected individuals were ranged between 20 and 80&#xa0;mm. The lapilli, the most appropriate otoliths in cyprinid species to assess fish growth (<xref ref-type="bibr" rid="B7">Bounket et&#x20;al., 2019</xref>), were extracted, immediately cleaned in distilled water and placed to dry in plastic&#x20;tubes.</p>
</sec>
<sec id="s2-3">
<title>Research Involving Animals</title>
<p>All relevant international, national, and/or institutional guidelines for the care and use of animals were followed. Fish were sacrificed using anaesthetic overdose (eugenol) in accordance with the European Directive 2010/63/EU. Fish were collected in accordance with the authorisation numbers: 2013-203-0005 and 2015-229-DDTSE01 delivered by the prefecture.</p>
</sec>
<sec id="s2-4">
<title>Hatching Date and Daily Otolith Growth</title>
<p>Otoliths were embedded in CrystalbondTM resin and polished on the frontal plane with abrasive paper and diamond solutions (&#xd8; 10, 3, 0.25&#xa0;&#x3bc;m, Escil, Chassieu, France). Each otolith was observed and digitized at &#xd7;1,000 magnification using a light microscope (Leica DM 2500, Solms, Germany) combined with a camera (Leica MC 170HD). Age was estimated by counting the daily increments (<xref ref-type="bibr" rid="B7">Bounket et&#x20;al., 2019</xref>) between the hatching check and the edge of the otolith along the maximum growth axis from the core to the anterior face. The hatching check was similar to those previously observed in other cyprinids (<xref ref-type="bibr" rid="B68">Smith and Walker, 2003</xref>; <xref ref-type="bibr" rid="B33">Li et&#x20;al., 2009</xref>). Three independent readers performed the age estimations three times. The degree of agreement between readings was assessed by determining the coefficient of variation (3.3&#x20;&#xb1; 1.0% and 3.1&#x20;&#xb1; 0.9% in mean for 2013 and 2015, respectively) (<xref ref-type="bibr" rid="B57">Panfili et&#x20;al., 2002</xref>). The distance between the nucleus and each daily growth increment was measured using the software ImageJ.&#x20;Hatching dates were estimated by subtracting the age of YOY from the date of capture.</p>
</sec>
<sec id="s2-5">
<title>Streamflow and Growing Degree-Day (GDD)</title>
<p>To characterise the hydrological conditions faced by YOY during their growth period, we computed the median of the daily discharge (<inline-formula id="inf1">
<mml:math id="m1">
<mml:mrow>
<mml:mover accent="true">
<mml:mi>Q</mml:mi>
<mml:mo>&#x2dc;</mml:mo>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula>) between hatching and sampling dates for each fish as a proxy of the flows experienced by&#x20;fish.</p>
<p>The growing degree-day is a thermal integral used to calculate the heat accumulation above a minimum temperature threshold. It is a good predictor of fish growth (<xref ref-type="bibr" rid="B49">Neuheimer and Taggart, 2007</xref>) mainly used to characterize the thermal regime experienced by fish during their growing period. GDDs were computed for each fish as the sum of the degree-days above the threshold of 12&#xb0;C (<xref ref-type="bibr" rid="B44">Mills and Mann, 1985</xref>) from the estimated hatching date to the day of capture.</p>
<p>We assessed the link between <inline-formula id="inf2">
<mml:math id="m2">
<mml:mrow>
<mml:mover accent="true">
<mml:mi>Q</mml:mi>
<mml:mo>&#x2dc;</mml:mo>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula> and GDD in each section and each year by computing Spearman&#x2019;s rank correlation coefficients (<italic>&#x3c1;</italic>).</p>
</sec>
<sec id="s2-6">
<title>Back-Calculation of Fish Daily Growth</title>
<p>The daily otolith growth increments were back-transformed into daily sizes to reconstruct the growth pattern for individual fish. In line with <xref ref-type="bibr" rid="B75">Vigliola and Meekan (2009)</xref>, we used the Modified Fry model (MF) to infer fish size-at-age from otolith growth. We followed the MF procedure, which is composed of five steps. The first two steps consist in estimating the size of the fish at the first increment, <italic>L</italic>
<sub>
<italic>0p</italic>
</sub>, and the size of the radius at the first increment, <italic>R</italic>
<sub>
<italic>0p</italic>
</sub>. These two parameters are biological intercepts and were determined from a controlled experiment (<xref ref-type="bibr" rid="B7">Bounket et&#x20;al., 2019</xref>). The third and fourth steps consist in determining whether the relationship between otolith <italic>radii</italic> and fish sizes is allometric or isometric and were performed independently for each section/year. To do this, we fitted the nonlinear regression:<disp-formula id="equ1">
<mml:math id="m3">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mrow>
<mml:mi>c</mml:mi>
<mml:mi>p</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mrow>
<mml:mn>0</mml:mn>
<mml:mi>p</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>b</mml:mi>
<mml:mo>&#x22c5;</mml:mo>
<mml:msubsup>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mn>0</mml:mn>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mi>c</mml:mi>
</mml:msubsup>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>b</mml:mi>
<mml:mo>&#x22c5;</mml:mo>
<mml:msubsup>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mi>c</mml:mi>
<mml:mi>p</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
<mml:mi>c</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</disp-formula>With <italic>L</italic>
<sub>
<italic>cpt</italic>
</sub> the size at capture and <italic>R</italic>
<sub>
<italic>cpt</italic>
</sub> the otolith radius at capture. The six coefficient <italic>c</italic> were tested against 1 and we concluded that allometry was required, since all the tests were significant (<italic>&#x3b1;</italic> &#x3d; 5%) excepted for the TAIL. For each section/year the back-calculation was performed with the formula:<disp-formula id="equ2">
<mml:math id="m4">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mi>a</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:mtext>exp</mml:mtext>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mtext>ln</mml:mtext>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mrow>
<mml:mn>0</mml:mn>
<mml:mi>p</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>a</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x2b;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mrow>
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</mml:mrow>
</mml:mrow>
<mml:mo>]</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
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</mml:mrow>
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</mml:mrow>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</disp-formula>With <italic>L</italic>
<sub>
<italic>i</italic>
</sub> the size at age <italic>i</italic>, <italic>R</italic>
<sub>
<italic>i</italic>
</sub> the radius at age <italic>i</italic>, and <italic>a</italic> derived from the formula <inline-formula id="inf3">
<mml:math id="m5">
<mml:mrow>
<mml:mi>a</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mrow>
<mml:mn>0</mml:mn>
<mml:mi>p</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>b</mml:mi>
<mml:mo>&#x22c5;</mml:mo>
<mml:msubsup>
<mml:mi>R</mml:mi>
<mml:mrow>
<mml:mn>0</mml:mn>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mi>c</mml:mi>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> and computed for each section/year. For more details, <italic>see</italic> &#x201c;Box 1&#x201d; from <xref ref-type="bibr" rid="B75">Vigliola and Meekan (2009)</xref>.</p>
</sec>
<sec id="s2-7">
<title>Relationship Between GDD and Fish Size</title>
<p>We fitted exponential response curves between length at capture and GDD using multiple linear regression (MLR) on the log-scale. To assess the relative influence of GDD, year (taken as a qualitative variable) and section, we first considered in the &#x201c;complete model&#x201d; all variables, the two-way interactions and the three-way interaction. Then, we tested the significance of the three-way interaction by testing (<italic>F-</italic>test) the complete model against a model without this interaction. If it was not significant, the interaction was removed and we tested models with and without the two-way interactions. If the two-way interactions were not significant, they were removed from the MLR and the MLR integrated only of the additional effect of the three explanatory variables.</p>
<p>We checked for the homoscedasticity. If it was not verified, then Generalised Least Square models (GLS) were used to account for the heteroscedasticity. GLS extend the linear models by modelling the heterogeneity with covariates (<xref ref-type="bibr" rid="B81">Zuur et&#x20;al., 2009</xref>).</p>
</sec>
<sec id="s2-8">
<title>Fish Growth Curves</title>
<p>To model the growth of fish we used a logistic growth model (<xref ref-type="bibr" rid="B65">Ricker, 1979</xref>) with four parameters, of the form:<disp-formula id="equ3">
<mml:math id="m6">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mi>&#x3b1;</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>&#x221e;</mml:mi>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>&#x3b1;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>&#x2b;</mml:mo>
<mml:msup>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>T</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>i</mml:mi>
</mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
</mml:mfrac>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>With <italic>L</italic>
<sub>
<italic>i</italic>
</sub> the size at age <italic>i</italic>, <italic>&#x3b1;</italic> the minimal asymptotic size, <italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub> the asymptotic size, <italic>T</italic> the inflexion point (in days), and <italic>&#x3b4;</italic> a scale factor (<xref ref-type="fig" rid="F2">Figure&#x20;2</xref>) inversely related to the rate of maximum growth (the slope at the inflexion point is steepest for the lower value of <italic>&#x3b4;</italic>). Indeed, the first derivate of this function is:<disp-formula id="equ4">
<mml:math id="m7">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>d</mml:mi>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mi>d</mml:mi>
<mml:mi>i</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>&#x221e;</mml:mi>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>&#x3b1;</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x22c5;</mml:mo>
<mml:msup>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>T</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>i</mml:mi>
</mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
</mml:mfrac>
</mml:mrow>
</mml:msup>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
<mml:mo>&#x22c5;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>&#x2b;</mml:mo>
<mml:msup>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>T</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>i</mml:mi>
</mml:mrow>
<mml:mi>&#x3b4;</mml:mi>
</mml:mfrac>
</mml:mrow>
</mml:msup>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msup>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>The logistic growth curve with the four parameters: asymptotic size (<italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub>), minimal asymptotic size (<italic>&#x3b1;</italic>), time at the inflexion point (<italic>T</italic>), and maximum growth rate (<italic>K</italic>), derived from the scale parameter &#x3b4; and computed as K &#x3d; (<italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub> - <italic>&#x3b1;</italic>)/(4&#x3b4;).</p>
</caption>
<graphic xlink:href="fenvs-09-784751-g002.tif"/>
</fig>
<p>At the inflexion point <italic>T</italic> (when <italic>i &#x3d; T</italic>), it simplifies to:<disp-formula id="equ5">
<mml:math id="m8">
<mml:mrow>
<mml:mi>K</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>&#x221e;</mml:mi>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>&#x3b1;</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:mn>4</mml:mn>
<mml:mi>&#x3b4;</mml:mi>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
</p>
<p>The minimal asymptomatic size, <italic>&#x3b1;</italic>, is not biologically meaningful (i.e.,&#x20;it is not an estimation of the size at hatching), but is important to fit constituent growth curves.</p>
<p>To model fish growth curves we used a Bayesian hierarchical framework, considering that each combination of section and year <italic>k</italic>, (i.e. BPS-2013, BPS-2015, TAIL-2013, TAIL-2015, RES-2013, RES-2015) had its own set of hyperparameters: <italic>&#x3b1;</italic>
<sub>
<italic>k</italic>
</sub>, <italic>L</italic>
<sub>
<italic>&#x221e;k</italic>
</sub>, <italic>T</italic>
<sub>
<italic>k</italic>
</sub> and <italic>&#x3b4;</italic>
<sub>
<italic>k</italic>
</sub>. Then each fish, <italic>j</italic>, was supposed to have its own set of parameters sampled from normal distributions with mean the hyperparemeters and with a given variance <inline-formula id="inf4">
<mml:math id="m9">
<mml:mrow>
<mml:msubsup>
<mml:mi>&#x3c3;</mml:mi>
<mml:mrow>
<mml:mi>x</mml:mi>
<mml:mi>k</mml:mi>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula> (<italic>x</italic> being a hyperparameter):<disp-formula id="equ6">
<mml:math id="m10">
<mml:mtable columnalign="left">
<mml:mtr>
<mml:mtd>
<mml:msub>
<mml:mi>&#x3b1;</mml:mi>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x223c;</mml:mo>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msub>
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<mml:mi>k</mml:mi>
</mml:msub>
<mml:mo>,</mml:mo>
<mml:msubsup>
<mml:mstyle displaystyle="true">
<mml:mi>&#x3c3;</mml:mi>
</mml:mstyle>
<mml:mrow>
<mml:msub>
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</mml:msub>
</mml:mrow>
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</mml:msubsup>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mtd>
</mml:mtr>
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<mml:mtd>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mrow>
<mml:mi>&#x221e;</mml:mi>
<mml:mi>k</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x223c;</mml:mo>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
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<mml:mi>k</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>,</mml:mo>
<mml:msubsup>
<mml:mstyle displaystyle="true">
<mml:mi>&#x3c3;</mml:mi>
</mml:mstyle>
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
<mml:mi>k</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mtd>
</mml:mtr>
<mml:mtr>
<mml:mtd>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x223c;</mml:mo>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
<mml:mo>,</mml:mo>
<mml:msubsup>
<mml:mstyle displaystyle="true">
<mml:mi>&#x3c3;</mml:mi>
</mml:mstyle>
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mtd>
</mml:mtr>
<mml:mtr>
<mml:mtd>
<mml:msub>
<mml:mi>&#x3b4;</mml:mi>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x223c;</mml:mo>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b4;</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
<mml:mo>,</mml:mo>
<mml:msubsup>
<mml:mstyle displaystyle="true">
<mml:mi>&#x3c3;</mml:mi>
</mml:mstyle>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b4;</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mtd>
</mml:mtr>
</mml:mtable>
</mml:math>
</disp-formula>
</p>
<p>Therefore &#x201c;hyperparameters&#x201d; represented the average coefficients of the growth model in each section/year, while &#x201c;parameters&#x201d; represented the coefficients of the individual growth curves. For each fish (<italic>j</italic>) of each section/year (<italic>k</italic>) we computed the average size at age <italic>i</italic> (<italic>&#xb5;</italic>
<sub>
<italic>kji</italic>
</sub>) such as:<disp-formula id="equ7">
<mml:math id="m11">
<mml:mrow>
<mml:msub>
<mml:mo>&#xb5;</mml:mo>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>j</mml:mi>
<mml:mi>i</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mi>&#x3b1;</mml:mi>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2b;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mrow>
<mml:msub>
<mml:mi>&#x221e;</mml:mi>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi>&#x3b1;</mml:mi>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>&#x2b;</mml:mo>
<mml:msup>
<mml:mi>e</mml:mi>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>i</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b4;</mml:mi>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>j</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
</p>
<p>Finally, the observed size at age <italic>i</italic>, <italic>L</italic>
<sub>
<italic>kji</italic>
</sub>, was supposed to be normally distributed:<disp-formula id="equ8">
<mml:math id="m12">
<mml:mrow>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>j</mml:mi>
<mml:mi>i</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x223c;</mml:mo>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3bc;</mml:mi>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>j</mml:mi>
<mml:mi>i</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>,</mml:mo>
<mml:msubsup>
<mml:mi>&#x3c3;</mml:mi>
<mml:mi>j</mml:mi>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</disp-formula>
</p>
<p>This hierarchical model is also heteroscedastic as each fish has its own dispersion parameters (<inline-formula id="inf5">
<mml:math id="m13">
<mml:mrow>
<mml:msubsup>
<mml:mi>&#x3c3;</mml:mi>
<mml:mi>j</mml:mi>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
</mml:math>
</inline-formula>).</p>
<p>For each hyperparameters we used a normal non-informative prior with mean 0 and for variance the inverse of the precision (&#x3c4;) for which we used a gamma non-informative prior:<disp-formula id="equ9">
<mml:math id="m14">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3b1;</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
<mml:mo>&#x223c;</mml:mo>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mn>0</mml:mn>
<mml:mo>,</mml:mo>
<mml:msubsup>
<mml:mi>&#x3c3;</mml:mi>
<mml:mi>k</mml:mi>
<mml:mn>2</mml:mn>
</mml:msubsup>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</disp-formula>
<disp-formula id="equ10">
<mml:math id="m15">
<mml:mrow>
<mml:msubsup>
<mml:mi>&#x3c3;</mml:mi>
<mml:mi>k</mml:mi>
<mml:mn>2</mml:mn>
</mml:msubsup>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mn>1</mml:mn>
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:math>
</disp-formula>
<disp-formula id="equ11">
<mml:math id="m16">
<mml:mrow>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
<mml:mo>&#x223c;</mml:mo>
<mml:mi>&#x393;</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mn>0.01</mml:mn>
<mml:mo>,</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mn>0.01</mml:mn>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</disp-formula>
</p>
<p>To compare the hyperparameters of each section/year, we computed the median and the associated credible interval (CI, 95%) of their posterior distributions that were obtained from 10&#x20;Monte-Carlo Markov Chains with 100,000 iterations. After an initial burning of 50,000 values, one value on 10 was conserved (to limit the autocorrelation between estimations). The convergence was checked through the Gelman and Rubin&#x2019;s convergence diagnostic that had to be close to one for all estimated parameters (<xref ref-type="bibr" rid="B10">Congdon, 2007</xref>).</p>
<p>The growth patterns were compared using the average growth curves of each section/year and their associated CI. To do so, the hyperparameters posterior distributions served to predict the average sizes at age for each section/year (50,000&#x20;<italic>&#xb5;</italic>
<sub>
<italic>ki</italic>
</sub> values), for which we computed the mean value (average pattern of growth) and the quantiles 2.5 and 97.5% (limits of the&#x20;CI).</p>
<p>All these computations were performed using the Bayesian software JAGS, the statistical software R (v. 4.1.0) and the libraries emmeans (1.6.1), R2jags (0.7.1), rjags (4.10), coda (0.19.4), car (3.0.10), dplyr (1.0.6), doParallel (1.0.16), gridExtra (2.3) ggplot2 (3.3.3), itertools (0.1.3), nlme (3.1.152), nls2 (0.2), and tidyr (1.1.3).</p>
<p>The R script is available in <xref ref-type="sec" rid="s11">Supplementary Material</xref>.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec id="s3-1">
<title>Hatching and Growth Period</title>
<p>The hatching dates varied from the end of April to the end of July in 2013, and from the beginning of April to the end of July in 2015. Hatching dates differed significantly between years (<italic>F</italic>
<sub>1,259</sub> &#x3d; 289.40, <italic>p</italic>-value &#x3c; 0.001) and between sections (<italic>F</italic>
<sub>
<italic>2,259</italic>
</sub> &#x3d; 4.46, <italic>p</italic>&#x20;&#x3d; 0.012), but without interaction between years and sections (<italic>F</italic>
<sub>
<italic>2,257</italic>
</sub> &#x3d; 2.44, <italic>p</italic>&#x20;&#x3d; 0.090) (<xref ref-type="fig" rid="F3">Figure&#x20;3</xref>). On average in 2015, the YOY hatched 28.24&#x20;days earlier (average hatching day &#x3d; 137.67 Julian days) than in 2013 (average hatching day &#x3d; 165.91 Julian days). In mean, the hatching dates were not significantly different in the BPS and in the RES (<italic>t &#x3d;</italic> &#x2212;0.029, <italic>p</italic>&#x20;&#x3d; 0.999), whereas YOY hatched 6.12&#x20;days (<italic>t &#x3d;</italic> 2.765, <italic>p</italic>&#x20;&#x3d; 0.017) and 6.17&#x20;days (<italic>t &#x3d;</italic> 2.684, <italic>p</italic>&#x20;&#x3d; 0.021) earlier in the TAIL than in the BPS and the RES, respectively.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Hatching date distributions <bold>(A</bold>,<bold>B)</bold>, daily mean discharges (m<sup>3</sup> s<sup>&#x2212;1</sup>) <bold>(C</bold>,<bold>D)</bold>, and daily mean water temperature (&#xb0;C) patterns <bold>(E</bold>,<bold>F)</bold> during the two studied years (2013, <italic>left panels</italic> and 2015, <italic>right panels</italic>).</p>
</caption>
<graphic xlink:href="fenvs-09-784751-g003.tif"/>
</fig>
<p>The growth period was on average 16.55&#xa0;days longer in 2015 than in 2013 (<italic>F</italic>
<sub>
<italic>1,261</italic>
</sub> <italic>&#x3d;</italic> 104.81, <italic>p</italic>&#x20;&#x3c; 0.001).</p>
</sec>
<sec id="s3-2">
<title>Stream-Flow and GDD</title>
<p>All <italic>&#x3c1;</italic>-values were close to one (&#x2265;0.96) and highly significant (<italic>p</italic>-values &#x3c; 0.001). These correlations were explained by the highest discharge values in early spring (<xref ref-type="fig" rid="F3">Figure&#x20;3</xref>). Therefore, fish that hatched earlier experienced higher discharge, had a longer growth period and thus greater GDD values than fish that hatched later in the year. Owing to the correlations observed between discharge and temperatures, we only presented and discussed the effect of temperature on fish growth.</p>
</sec>
<sec id="s3-3">
<title>GDD and Size at Capture</title>
<p>The sum of degree day (GDD) varied between years and between sections (GLS, <italic>p</italic>-values &#x3c;0.001), without interaction (<italic>F</italic>
<sub>
<italic>2,257</italic>
</sub> <italic>&#x3d;</italic> 0.094, <italic>p</italic>&#x20;&#x3d; 0.910). On average in 2015, GDD exceeded by 379.4&#xb0;C those experienced by fish in 2013 (<italic>t</italic>
<sub>
<italic>259</italic>
</sub> &#x3d; 44.1, <italic>p</italic>&#x20;&#x3c; 0.001). As for the hatching dates, GDD in the BPS and RES were not significantly different (<italic>t</italic>&#x20;&#x3d; 0.172, <italic>p</italic>&#x20;&#x3d; 0.984), whereas the TAIL exhibited higher values of GDD than the BPS and the RES, with differences of 42.4 and 40.6&#xb0;C, respectively (<italic>t</italic>-tests, <italic>p</italic>-values &#x3c; 0.001).</p>
<p>The effect of GDD on size at capture (<italic>L</italic>
<sub>
<italic>cpt</italic>
</sub>) varied between sections and years, as revealed by the significant interaction between these three variables (<italic>F</italic>
<sub>
<italic>2,251</italic>
</sub> &#x3d; 3.616, <italic>p</italic>&#x20;&#x3d; 0.029). The slope of the relationship between GDD and the logarithm of <italic>L</italic>
<sub>
<italic>cpt</italic>
</sub> was different but always positive whatever the couple of section-year (<xref ref-type="fig" rid="F4">Figure&#x20;4</xref>). The goodness of fit of these relationships, measured by the root mean square errors (RMSE; <xref ref-type="table" rid="T1">Table&#x20;1</xref>), was variable and greater for the BPS or the TAIL (depending of the year), followed by the RES. RMSEs were higher in 2015 than in 2013 (<xref ref-type="table" rid="T1">Table&#x20;1</xref>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Relationship between growing degree-days (<italic>GDD</italic> &#x3e; 12&#xb0;C) and chub size at capture (<italic>L</italic>
<sub>
<italic>cpt</italic>
</sub>), between years and sections. <italic>Curves</italic> are the estimated exponential regressions.</p>
</caption>
<graphic xlink:href="fenvs-09-784751-g004.tif"/>
</fig>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Root mean square errors (mm) of the relationships between growing degree-days (GDD) and size at capture (<italic>L</italic>
<sub>
<italic>cpt</italic>
</sub>) for the different sections and years for chub collected in the reach of Caderousse (Rh&#xf4;ne River, France).</p>
</caption>
<table>
<thead valign="top">
<tr>
<th rowspan="2" align="left">Section</th>
<th colspan="2" align="center">RMSE (mm)</th>
</tr>
<tr>
<th align="center">2013</th>
<th align="center">2015</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">BPS</td>
<td align="char" char=".">6.02</td>
<td align="char" char=".">6.32</td>
</tr>
<tr>
<td align="left">RES</td>
<td align="char" char=".">8.18</td>
<td align="char" char=".">10.90</td>
</tr>
<tr>
<td align="left">TAIL</td>
<td align="char" char=".">5.10</td>
<td align="char" char=".">7.25</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>BPS, bypassed section; RES, reservoir of Caderousse; TAIL, tailrace of the Boll&#xe8;ne power&#x20;plant.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3-4">
<title>Fish Growth Curve</title>
<p>Gelman and Rubin&#x2019;s convergence diagnostics were all close to 1&#x20;revealing that convergence was achieved. The average RMSEs&#x20;were low whatever the sections or years, ranging between 0.298 and 0.556&#xa0;mm (<xref ref-type="table" rid="T2">Table&#x20;2</xref>). Therefore, the logistic growth model seemed well adapted to model the daily growth of YOY&#x20;chub.</p>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>Average root mean square errors (RMSE; mm) of individual growth curves and their associated credible interval CI (95%).</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Section</th>
<th align="center">Year</th>
<th align="center">RMSE (mm)</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td rowspan="2" align="left">BPS</td>
<td align="char" char=".">2013</td>
<td align="center">0.433 (0.128&#x2013;0.911)</td>
</tr>
<tr>
<td align="char" char=".">2015</td>
<td align="center">0.298 (0.147&#x2013;0.474)</td>
</tr>
<tr>
<td rowspan="2" align="left">TAIL</td>
<td align="char" char=".">2013</td>
<td align="center">0.556 (0.178&#x2013;0.856)</td>
</tr>
<tr>
<td align="char" char=".">2015</td>
<td align="center">0.428 (0.204&#x2013;0.946)</td>
</tr>
<tr>
<td rowspan="2" align="left">RES</td>
<td align="char" char=".">2013</td>
<td align="center">0.383 (0.136&#x2013;0.899)</td>
</tr>
<tr>
<td align="char" char=".">2015</td>
<td align="center">0.376 (0.154&#x2013;0.636)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>BPS, bypassed section; RES, reservoir of Caderousse; TAIL, tailrace of the Boll&#xe8;ne power&#x20;plant.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3-5">
<title>Minimal Asymptotic Size, &#x3b1;</title>
<p>The <italic>&#x3b1;</italic> varied between years and sections (<xref ref-type="fig" rid="F5">Figure&#x20;5</xref>). The lower median value was observed for the TAIL in 2013, while RES had always the highest values (even higher in 2015). There was no difference between the 2&#xa0;years for the BPS (<xref ref-type="fig" rid="F5">Figure&#x20;5</xref>).</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Average values (<italic>dots</italic>) and their associated credible intervals (95%; <italic>vertical lines</italic>) of the posterior distributions of the four parameters of the logistic growth curves, per sections and year, with the maximum asymptotic size (<italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub>), the minimal asymptotic size (<italic>&#x3b1;</italic>), the time at the inflexion point (<italic>T</italic>), and the maximum growth rate (<italic>K</italic>).</p>
</caption>
<graphic xlink:href="fenvs-09-784751-g005.tif"/>
</fig>
</sec>
<sec id="s3-6">
<title>Asymptotic Size, L<sub>&#x221e;</sub>
</title>
<p>The fitted <italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub> varied between sections and years, as revealed by the CI displayed on <xref ref-type="fig" rid="F5">Figure&#x20;5</xref>. TAIL displayed the highest <italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub>, but conversely to the BPS and RES, they were consistent between years (77.8&#xa0;mm). BPS had the lowest <italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub> values and RES intermediate values. BPS and RES displayed greater asymptotic size during 2015 than in 2013, but the difference was magnified in the reservoir (&#x25b3;<italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub> &#x3d; 13.32&#xa0;mm for RES and 9.93&#xa0;mm for BPS) (<xref ref-type="fig" rid="F5">Figure&#x20;5</xref>).</p>
</sec>
<sec id="s3-7">
<title>Inflexion Point, T</title>
<p>Similar patterns were observed for T and <italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub> values, except that TAIL displayed intermediate values and not the greatest ones. For BPS and RES, the inflexion points appeared later in the growing period during the warmest year, but no significant differences were observed for the TAIL (<xref ref-type="fig" rid="F5">Figure&#x20;5</xref>).</p>
</sec>
<sec id="s3-8">
<title>Maximum Growth Rate, K</title>
<p>The maximum growth rates (<italic>K</italic>, slope at the inflexion point) were stronger in 2015 than in 2013 in all sections, but the difference was only significant in RES. The greatest values were observed in RES in 2015. The lowest <italic>K</italic> were observed in the BPS. TAIL had a greater median value than RES in 2013 (but CIs overlapped) and shared with RES fairly similar values in 2015 (<xref ref-type="fig" rid="F5">Figure&#x20;5</xref>).</p>
</sec>
<sec id="s3-9">
<title>Fish Growth</title>
<p>Growth patterns were highly variable between sections and between years (<xref ref-type="fig" rid="F6">Figure&#x20;6</xref>) with all average daily growth curves different except for the BPS (<xref ref-type="fig" rid="F6">Figure&#x20;6</xref>). Up to the 75th day of growth, the curves of BPS were almost similar. Then in 2015 the YOY tended to have a slightly faster growth (but overlapping CIs) to reach a larger asymptotic size, also due to a longer growing period. For the TAIL, all along their growing period YOY were larger in 2015 than in 2013, the deviations increased with time (but overlapping CIs). For the RES, until the 70th day of growth, YOY of 2013 were slightly larger. Then a shift occurred with a steeper growth for YOY of 2015, which became increasingly larger than those of 2013, with magnitude of deviation not observed in the two other sections.</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>The average growth curves (<italic>lines</italic>) and their associated credible intervals (95%; <italic>bands</italic>) for each section and each year during the maximum growth periods observed.</p>
</caption>
<graphic xlink:href="fenvs-09-784751-g006.tif"/>
</fig>
<p>When comparing growth curves within each year, we observed that in the colder year (2013) YOY of TAIL had the fastest growth, and that YOY of BPS and RES had close growth patterns. In 2015, YOY of TAIL became larger sooner than all the others. After the 50th day of growth YOY of TAIL were significantly larger than YOY of the BPS. Up to the 85th day of growth, this was also true for RES, but due to the steeper growth in this section, the deviation between the sizes of TAIL and RES decreased and became not significant (CIs overlapping). The growth curve in the RES was partly similar to that of the BPS (during very early life) and that of the TAIL (after day&#x20;75).</p>
</sec>
<sec id="s3-10">
<title>Individual Variability</title>
<p>Even not observable in <xref ref-type="fig" rid="F5">Figure&#x20;5</xref> (but <italic>see</italic> <xref ref-type="sec" rid="s11">Supplementary Material S1</xref>), the variability between YOY collected at the same location, and during the same year, was also important as revealed by the posterior distributions of the dispersion parameters (<italic>&#x3c4;</italic>) expressed as standard deviations (<xref ref-type="table" rid="T3">Table&#x20;3</xref>). They were higher for the parameters with the greatest values (<italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub> and <italic>T</italic>), but standard deviations also varied between sections and years without clear patterns.</p>
<table-wrap id="T3" position="float">
<label>TABLE 3</label>
<caption>
<p>Summary of the posterior distribution of the dispersion parameters (<italic>&#x3c4;</italic>
<sub>
<italic>k</italic>
</sub>).</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Section</th>
<th align="center">Year</th>
<th align="center">
<italic>&#x3b1;</italic>
</th>
<th align="center">
<italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub>
</th>
<th align="center">
<italic>T</italic>
</th>
<th align="center">
<italic>&#x3b4;</italic>
</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td rowspan="2" align="left">BPS</td>
<td align="center">2013</td>
<td align="center">1.75 (1.49&#x2013;2.10)</td>
<td align="center">11.19 (9.63&#x2013;13.21)</td>
<td align="center">10.49 (9.04&#x2013;12.37)</td>
<td align="center">4.60 (3.95&#x2013;5.45)</td>
</tr>
<tr>
<td align="center">2015</td>
<td align="center">2.45 (1.98&#x2013;3.12)</td>
<td align="center">12.01 (9.83&#x2013;15.13)</td>
<td align="center">10.35 (8.49&#x2013;13.03)</td>
<td align="center">5.49 (4.46&#x2013;6.97)</td>
</tr>
<tr>
<td rowspan="2" align="left">TAIL</td>
<td align="center">2013</td>
<td align="center">3.38 (2.38&#x2013;5.15)</td>
<td align="center">12.93 (9.38&#x2013;19.29)</td>
<td align="center">8.65 (6.29&#x2013;12.90)</td>
<td align="center">5.14 (3.68&#x2013;7.75)</td>
</tr>
<tr>
<td align="center">2015</td>
<td align="center">2.86 (2.26&#x2013;3.75)</td>
<td align="center">12.32 (9.86&#x2013;15.99)</td>
<td align="center">7.93 (6.36&#x2013;10.30)</td>
<td align="center">5.02 (3.99&#x2013;6.57)</td>
</tr>
<tr>
<td rowspan="2" align="left">RES</td>
<td align="center">2013</td>
<td align="center">2.12 (1.71&#x2013;2.71)</td>
<td align="center">14.52 (11.79&#x2013;18.55)</td>
<td align="center">10.35 (8.40&#x2013;13.16)</td>
<td align="center">5.58 (4.51&#x2013;7.13)</td>
</tr>
<tr>
<td align="center">2015</td>
<td align="center">1.37 (1.12&#x2013;1.74)</td>
<td align="center">15.38 (12.63&#x2013;19.34)</td>
<td align="center">10.84 (8.91&#x2013;13.60)</td>
<td align="center">3.95 (3.23&#x2013;4.95)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Precision parameters were transformed into standard deviations <inline-formula id="inf6">
<mml:math id="m17">
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mi>s</mml:mi>
<mml:msub>
<mml:mi>d</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msqrt>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>/</mml:mo>
<mml:msub>
<mml:mi>&#x3c4;</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
</mml:mrow>
</mml:msqrt>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:math>
</inline-formula>, averaged and the credible intervals (95%) added in parenthesis. BPS, bypassed section; RES, reservoir of Caderousse; TAIL, tailrace of the Boll&#xe8;ne power plant; <italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub>, asymptotic size; <italic>&#x3b1;</italic>, the minimal asymptotic size; <italic>T</italic>, the time at the inflexion point; <italic>&#x3b4;</italic>, scale factor.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>First, our results showed that YOY chub hatched earlier and had a longer hatching period in 2015 than in 2013 resulting in a longer growing period during the warmer year. Second, the YOY sizes at capture were positively related to growing degree-days. Third, the growth patterns were highly variable between sections and years, with an increase in size-at-age in all sections when GDD increased.</p>
<sec id="s4-1">
<title>Hatching Date</title>
<p>In the Caderousse reach, the YOY chub hatched from mid-April to the end of July. Most of the estimated hatching dates were observed when the water temperature exceeded 12&#xb0;C and followed the last spring high. Our observations indicated an extended and longer hatching period compared to former results from European temperate rivers: the Ourthe River, Belgium (April), the Spree River, Germany (May), the rivers Jilhava and Rokytna, Czech Republic (mid-May to mid-June), rivers of Great Britain such as the Stour (May to June), the Lugg (May/June), the Trent (mid-June to mid-July), or in the Upper Rh&#xf4;ne (June) (<xref ref-type="bibr" rid="B24">Hellawell, 1971</xref>; <xref ref-type="bibr" rid="B41">Mann, 1976</xref>; <xref ref-type="bibr" rid="B60">Pe&#x148;&#xe1;z et&#x20;al., 1978</xref>; <xref ref-type="bibr" rid="B63">Proke&#x161; and Pe&#x148;&#xe1;z, 1980</xref>; <xref ref-type="bibr" rid="B61">Philippart and Vranken, 1983</xref>; <xref ref-type="bibr" rid="B8">Carrel, 1986</xref>; <xref ref-type="bibr" rid="B52">Nunn et&#x20;al., 2002</xref>; <xref ref-type="bibr" rid="B18">Fredrich et&#x20;al., 2003</xref>; <xref ref-type="bibr" rid="B54">Nunn et&#x20;al., 2007</xref>). These differences could be linked to the elapsed time between these studies and our observations, and the possible temperature shift along this period. The extension of the breeding period could result from multiple or protracted spawning events of chub in a new climate context (<xref ref-type="bibr" rid="B16">Dayon et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B56">Ouellet et&#x20;al., 2020</xref>).</p>
<p>Temperature played a major role in hatching date variability, both between years and between sections. Indeed, the hatching occurred on average 1&#xa0;month earlier (&#x2248;28&#xa0;days) during the warmest year and about 1&#xa0;week earlier (&#x2248;6&#xa0;days) in the warmer section (within the same year). Such variability in hatching date is consistent with previous observations on the aforementioned chub and other species such as roach and common bream (<italic>Abramis brama</italic> (Linnaeus, 1758)) (<xref ref-type="bibr" rid="B50">N&#xf5;ges and J&#xe4;rvet, 2005</xref>), the roach (<xref ref-type="bibr" rid="B20">Gillet and Qu&#xe9;tin, 2006</xref>), the Selincuo naked carp (<italic>Gymnocypris selincuoensis</italic>), a cyprinid from the Tibetan Plateau (<xref ref-type="bibr" rid="B71">Tao et&#x20;al., 2018</xref>), or the threespined stickleback (<italic>Gasterosteus aculeatus</italic> (Linnaeus, 1758)) (<xref ref-type="bibr" rid="B25">Hovel et&#x20;al., 2017</xref>). <xref ref-type="bibr" rid="B20">Gillet and Qu&#xe9;tin (2006)</xref> showed that an increase of 1&#xb0;C in Lake Geneva led to earlier development of the ovaries and spawning date of roach, suggesting that spawning would be reached earlier with global warming. In a historical review, <xref ref-type="bibr" rid="B73">Thorpe (1977)</xref> showed a positive relationship between spawning date and latitude for the Eurasian perch (<italic>Perca fluviatilis</italic> (Linnaeus, 1758)), which generally spawn at a lower temperature and later date as latitude increases. However, current work using long-term surveys showed significant phenological trends associated with climate change. Spring spawning of Eurasian perch of the North Basin and the South Basin of Windermere (UK) advanced by 2.5&#x2013;5.0&#xa0;days&#xa0;decade<sup>&#x2212;1</sup> from 1968 to 2009 (<xref ref-type="bibr" rid="B72">Thackeray et&#x20;al., 2013</xref>). Furthermore, shifts in the annual thermal regime to an earlier spring warming and later autumn cooling now affect both spring and autumn spawners. In the Laurentian Great Lakes, <xref ref-type="bibr" rid="B38">Lyons et&#x20;al. (2015)</xref> suggested that the yellow perch (<italic>P. flavescens</italic> (Mitchill, 1814)) was spawning earlier to maintain a consistent spawning temperature. The phenological patterns observed for lake trout (<italic>Salvelinus namaycush</italic> (Walbaum, 1792)) indicated a possible tendency for later spawning in autumn, but the trend was less explicit for the period studied (1983&#x2013;2012). In the current context of global warming, multi-spawning species as chub and thermophilous fish species could benefit from an extended spawning period, a longer first year growing period and progressively dominate fish assemblages (<xref ref-type="bibr" rid="B46">Mueller et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B39">Maire et&#x20;al., 2019</xref>).</p>
<p>Temperature is already known to affect numerous aspects of fish reproduction and early life stages, such as gonad development, hatching date (<xref ref-type="bibr" rid="B58">Pankhurst and Munday, 2011</xref>), and the number of annual spawning events for multiple or protracted spawning species (<xref ref-type="bibr" rid="B54">Nunn et&#x20;al., 2007</xref>). Multiple spawners such as bleak and chub (<xref ref-type="bibr" rid="B60">Pe&#x148;&#xe1;z et&#x20;al., 1978</xref>; <xref ref-type="bibr" rid="B18">Fredrich et&#x20;al., 2003</xref>) experienced more spawning events in warm compared with cold environmental conditions (<xref ref-type="bibr" rid="B40">Mann et&#x20;al., 1984</xref>). While these breeding strategies were known to increase the number of yearly sub-cohorts and the extent of YOY size range during warmer and dryer years (<xref ref-type="bibr" rid="B6">Bolland et&#x20;al., 2007</xref>; <xref ref-type="bibr" rid="B54">Nunn et&#x20;al., 2007</xref>), current change in the thermal regime of large rivers such as the Rh&#xf4;ne River could explain the observed recent success of species with multiple spawning such as chub, bleak (<italic>Alburnus alburnus</italic> (Linnaeus, 1758)), gudgeon (<italic>Gobio gobio</italic> (Linnaeus, 1758)), barbel (<italic>Barbus barbus</italic> (Linnaeus, 1758)), schneider (<italic>Alburnoides bipunctatus</italic> (Bloch, 1782)), bitterling (<italic>Rhodeus amarus</italic> (Bloch, 1792)), and topmouth gudgeon (<italic>Pseudorasbora parva</italic> (Temminck and Schlegel, 1846)) (<xref ref-type="bibr" rid="B39">Maire et&#x20;al., 2019</xref>). In addition to these changes in fish assemblages, current monitoring surveys showed an increase in the variability and extent of YOY size range in autumn, with sampling of small surviving individuals in following year (G. Carrel, pers.&#x20;obs.).</p>
</sec>
<sec id="s4-2">
<title>Growth</title>
<p>Degree-days are known to be a reliable predictor of fish growth (<xref ref-type="bibr" rid="B49">Neuheimer and Taggart, 2007</xref>). In our study, the size at capture of YOY chub had a clear positive exponential relationship with GDD regardless of section or year. The thermal integral has already been used to explain the inter-annual variation of the mean size of dominant cyprinids such as roach, dace, and chub in British rivers (<xref ref-type="bibr" rid="B44">Mills and Mann, 1985</xref>; <xref ref-type="bibr" rid="B51">Nunn et&#x20;al., 2003</xref>) and of the most common species of fish assemblage in the lower Oder River (<xref ref-type="bibr" rid="B80">Wolter, 2007</xref>). Nonetheless, our results suggest that the variation in GDD experienced individually by YOY during their first growth period could also explain the variability in autumnal size between individuals. Therefore, GDD is a useful thermal parameter to explain both inter-annual and intra-annual variability of size. As proposed by <xref ref-type="bibr" rid="B70">Spurgeon et&#x20;al. (2020)</xref>, GDD could be more widely used as a predictor of fish growth.</p>
<p>Several models were developed to model individual growth and were successfully used with fish (<xref ref-type="bibr" rid="B19">Gamito, 1998</xref>; <xref ref-type="bibr" rid="B5">Blanck and Lamouroux, 2007</xref>). Even if the Von Bertalanffy model (one of the most used model) was successfully used by some authors to model daily growth (e.g., <xref ref-type="bibr" rid="B37">Loisel et&#x20;al., 2019</xref>), it performed poorly on our data (unpublished results) in accordance with other studies (e.g. <xref ref-type="bibr" rid="B32">Lester et&#x20;al., 2004</xref>). By contrast, the logistic growth model with four parameters (minimal asymptotic size, maximal asymptotic size time at the point of inflexion, and the rate of maximum growth) was well adapted to model YOY daily growth from size back-calculation, as demonstrated by the RMSE values.</p>
<p>Growth patterns showed an increase in fish growth with the increase in temperature for the three sections. Overall, when temperature increased, we observed an increase in the asymptotic size (<italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub>), the growth rate (<italic>K</italic>), and a delayed inflexion point (&#x2248;10&#xa0;days later than in 2013). Therefore, fish were larger due to the fact that they grew faster and for a longer period of time in warmer conditions. However, the magnitude of the difference between average growth curves varied among sections and was most marked for the reservoir. For the BPS, growth curves diverged lately but led to very different asymptotic size, mainly due to the delayed inflexion point. This reveals the importance of the early hatching and thus of the longer growing period on the autumn size of the YOY inhabiting the BPS. Fish in the tailrace also exhibited magnified growth in warmer conditions, with fast deviation of the average growth curves (but overlapping credible intervals). Surprisingly, the estimated <italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub> were relatively similar. Several hypotheses could explain the high <italic>L</italic>
<sub>
<italic>&#x221e;</italic>
</sub> values observed in the TAIL: a selection of the most robust individuals according to the hydraulic characteristics of this section; the achievement of maximal fish growth in relation to the artificial thermal context; a greatest food availability or a higher food quality (<xref ref-type="bibr" rid="B29">Jonsson et&#x20;al., 2013</xref>; <xref ref-type="bibr" rid="B74">Uphoff et&#x20;al., 2013</xref>); or a lower density of fish for example (<xref ref-type="bibr" rid="B21">Grant and Imre, 2005</xref>). In a previous study, <xref ref-type="bibr" rid="B45">Morat et&#x20;al. (2018)</xref> also showed that roach were more abundant in the BPS than in the TAIL. By reducing competition, this lower fish density could explain the higher fish size observed in the TAIL. The relative stability of TAIL abiotic conditions (oxygen saturation and temperature) compared with other sections could also explain this pattern as variations in oxygen saturation was shown to reduce fish growth (<xref ref-type="bibr" rid="B47">Mustafa et&#x20;al., 2011</xref>). Although these parameter values are estimated and not observed size at the end of the first growing season, they were consistent with YOY total size already recorded in this section during early winter (<xref ref-type="bibr" rid="B42">Meynard et&#x20;al., 2012</xref>); but other physicochemical characteristics could also have been of major importance. Therefore, the mechanisms explaining the different growth patterns observed between the two studied years were different for the three sections, as revealed by the distributions of the model&#x20;parameters.</p>
<p>Globally, our results are consistent with the general theory that attempts to explain the variation in individual size with temperature. Indeed, the &#x201c;Temperature-Size Rule&#x201d; (TSR) theory (<xref ref-type="bibr" rid="B1">Atkinson, 1994</xref>) states that, in warmer conditions, growth at young stages is magnified compared with the growth of individuals reared in cooler temperatures. While working with individuals sampled <italic>in situ</italic>, we obtained results consistent with those obtained in controlled conditions (<xref ref-type="bibr" rid="B37">Loisel et&#x20;al., 2019</xref>): larger fish and greater growth rates in warmer conditions. This was observed when comparing the growth pattern of chub YOY for each section: as GDD increased, size-at-age also increased. As other large river-floodplain hydrosystems in Europe, the composition of Rh&#xf4;ne fish assemblages had been historically modified following major engineering works during the 19th and 20th centuries (<xref ref-type="bibr" rid="B55">Olivier et&#x20;al., 2009</xref>). <xref ref-type="bibr" rid="B15">Daufresne et&#x20;al. (2015)</xref> showed that global warming increased the rapid turnover of the fish communities in the Rh&#xf4;ne River, with &#x201c;southern&#x201d; and smaller-size species increasingly represented. Along the Rh&#xf4;ne River, three open-cycle cooling nuclear power plants (Bugey, Saint-Alban, and Tricastin) contribute to an artificial increase in water temperature along the river (<xref ref-type="bibr" rid="B76">Wawrzyniak et&#x20;al., 2012</xref>). Current climate change exacerbates the ecological impacts of rising temperatures (<xref ref-type="bibr" rid="B14">Daufresne et&#x20;al., 2003</xref>). The TSR predicts that adults will be smaller and their size at first reproduction will likewise be smaller (<xref ref-type="bibr" rid="B31">Kuparinen et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B37">Loisel et&#x20;al., 2019</xref>), leading to the rejuvenation of fish populations (e.g. <xref ref-type="bibr" rid="B13">Daufresne and Boet, 2007</xref>; <xref ref-type="bibr" rid="B62">Piffady et&#x20;al., 2010</xref>). The success of small thermophile species such as the bitterling or the topmouth gudgeon in the lower Rh&#xf4;ne River, as in other large regulated European rivers, strengthens the general decrease in fish size within the overall fish assemblage. Nonetheless, even if these results were consistent with the TSR, the patterns observed in the different sections and their variations between years demonstrated that other factors such as the water velocity, phenology, or the oxygen availability are able to modulate the effect of temperature on the growth of chub&#x20;YOY.</p>
<p>In addition, even if significant differences in GDD were observed between years, only fish in the RES displayed large differences in their growth pattern, although growth was magnified for the three sections during the warmer year. This is consistent with the study of <xref ref-type="bibr" rid="B64">Richard and Rypel (2013)</xref>, which showed that temperature effect on growth rate is magnified in lentic systems. Temperature effect varies with fish size and/or life stages. Indeed, the effect of warming on fish growth was positive but stronger for small individuals than for larger fish; this was observed for flatfishes (<xref ref-type="bibr" rid="B28">Imsland et&#x20;al., 1996</xref>), Gadids (<xref ref-type="bibr" rid="B59">Pedersen and Jobling, 1989</xref>), Salmonids (<xref ref-type="bibr" rid="B3">Beauchamp, 2009</xref>), and Percids (<xref ref-type="bibr" rid="B27">Huss et&#x20;al., 2019</xref>). This difference seems linked to thermal optimum that decrease with fish size. On two long time series, <xref ref-type="bibr" rid="B27">Huss et&#x20;al. (2019)</xref> showed that the average size of fish was longer for all size-at-age with warming, but also that this is related to a gradual higher growth at early life stage. This size&#x2013;dependent warming effect on fish growth are known to change regulation and dynamic of populations and communities by affecting the species interactions (<xref ref-type="bibr" rid="B34">Lindmark et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B35">2019</xref>).</p>
<p>The inter-annual variations of YOY size at the end of the growing season observed in the Rh&#xf4;ne River, as well as other rivers (<xref ref-type="bibr" rid="B6">Bolland et&#x20;al., 2007</xref>), could be explained both by an important variability in hatching time (earlier in the warmest environment or years), in the length of their growing period and by differential growth rates among individuals and/or populations. Moreover, our study results evidenced the major effect of thermal conditions (expressed in GDD) experienced by YOY during their life and are in accordance with the TSR. However, our results also showed that other factors might mitigate the influence of temperature on the early life stage of&#x20;fish.</p>
</sec>
</sec>
</body>
<back>
<sec id="s5">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are publicly available. This data can be found here. <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.6084/m9.figshare.16691323">https://doi.org/10.6084/m9.figshare.16691323</ext-link> (<xref ref-type="bibr" rid="B36">Logez and Morat, 2021</xref>).</p>
</sec>
<sec id="s6">
<title>Ethics Statement</title>
<p>Ethical review and approval was not required for the animal study because All relevant international, national, and/or institutional guidelines for the care and use of animals were followed. Fish were sacrificed using anaesthetic overdose (eugenol) in accordance with the European Directive 2010/63/EU. Fish were collected in accordance with the authorisation numbers: 2013-203-0005 and 2015-229-DDTSE01 delivered by the prefecture.</p>
</sec>
<sec id="s7">
<title>Author Contributions</title>
<p>This study was designed by GC and FM. Field collections were made GC, FM, XC, PG, and VD. Otolith analyses were conducted by BB, PG, XC, and FM. Statistical analyses were conducted by ML. The manuscript was written by ML, FM, GC, and&#x20;BB.</p>
</sec>
<sec id="s8">
<title>Funding</title>
<p>This study was funded by the French Office for Biodiversity (OFB), by Electricity of France (EDF), and by the national research institute in science and technology for the environment and agriculture (INRAE).</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s10">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<ack>
<p>The authors would like to thank Baptiste Testi and Pierre Favriou for their help with fish collection, Jean-Jacques Boreux of the University of Li&#x00E9;ge for his precious help concerning Bayesian hierarchical models, Christine Argillier for her help in the preparation of this paper and Coralie Garron for her precious help with the English.</p>
</ack>
<sec id="s11">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fenvs.2021.784751/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fenvs.2021.784751/full&#x23;supplementary-material</ext-link>
</p>
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</sec>
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