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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Ecol. Evol.</journal-id>
<journal-title>Frontiers in Ecology and Evolution</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Ecol. Evol.</abbrev-journal-title>
<issn pub-type="epub">2296-701X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fevo.2023.1232639</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Ecology and Evolution</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Chemical and population genetic analysis show no evidence of ecotype formation in a European population of the parasitoid wasp <italic>Nasonia vitripennis</italic>
</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Buellesbach</surname>
<given-names>Jan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1692904"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Lammers</surname>
<given-names>Mark</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2415214"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>van de Belt</surname>
<given-names>Jos&#xe9;</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2503836/"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Pannebakker</surname>
<given-names>Bart A.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/165421"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Institute for Evolution &amp; Biodiversity, University of M&#xfc;nster</institution>, <addr-line>M&#xfc;nster</addr-line>, <country>Germany</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Laboratory of Genetics, Wageningen University &amp; Research</institution>, <addr-line>Wageningen</addr-line>, <country>Netherlands</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Johannes St&#xf6;kl, University of Bayreuth, Germany</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Susan Gershman, The Ohio State University, United States; Audrey Bras, University of Helsinki, Finland</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Jan Buellesbach, <email xlink:href="mailto:buellesb@uni-muenster.de">buellesb@uni-muenster.de</email>; Bart A. Pannebakker, <email xlink:href="mailto:bart.pannebakker@wur.nl">bart.pannebakker@wur.nl</email>
</p>
</fn>
<fn fn-type="equal" id="fn003">
<p>&#x2020;These authors have contributed equally to this work</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>26</day>
<month>09</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>11</volume>
<elocation-id>1232639</elocation-id>
<history>
<date date-type="received">
<day>31</day>
<month>05</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>04</day>
<month>09</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Buellesbach, Lammers, van de Belt and Pannebakker</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Buellesbach, Lammers, van de Belt and Pannebakker</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Ecotypes, subpopulations or strains of a single species locally adapted to divergent ecological conditions within the same habitat are often considered to be the first steps in sympatric speciation. It has been suggested that two ecotypes are distinguishable in <italic>Nasonia vitripennis</italic>, a prominent model organism for parasitic Hymenoptera, with one ecotype parasitizing fly pupae in bird nests, and the other one parasitizing fly pupae on carrion. This differentiation into two ecotypes has been hypothesized to indicate incipient sympatric speciation in populations of this globally distributed species. In the present study, we investigated the differentiation into these two distinct ecotypes focusing on chemical profiles and the population genetic divergence in a wild <italic>N. vitripennis</italic> population from the Netherlands. Isofemale lines were obtained from bird nest boxes and from deer carrion, respectively, representing both microhabitats. To test for phenotypic differentiation, we determined the surface cuticular hydrocarbon (CHC) profiles from wasps of both host patches. Using a panel of 14 microsatellites, we concordantly determined the population genetic structure and tested for genetic differentiation between foundresses obtained from both microhabitats. Both the phenotypic as well as the genetic datasets show no evidence for any kind of separation based on the postulated two ecotypes, but rather suggest free interbreeding with no gene flow interruption between the two distinct host patches. Our findings challenge previous assumptions on clearly distinguishable ecotypes in <italic>N. vitripennis</italic>, and demonstrate how a chemical ecological assessment coupled with population genetics can be instrumental in re-evaluating the potential of ecological differentiation and incipient speciation mechanisms in parasitoid wasps.</p>
</abstract>
<kwd-group>
<kwd>cuticular hydrocarbons</kwd>
<kwd>chemical ecology</kwd>
<kwd>microsatellites</kwd>
<kwd>population structure</kwd>
<kwd>speciation</kwd>
<kwd>niche differentiation</kwd>
<kwd>parasitic Hymenoptera</kwd>
</kwd-group>
<contract-num rid="cn001">BU3439/1-1</contract-num>
<contract-sponsor id="cn001">Deutsche Forschungsgemeinschaft<named-content content-type="fundref-id">10.13039/501100001659</named-content>
</contract-sponsor>
<counts>
<fig-count count="4"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="76"/>
<page-count count="9"/>
<word-count count="4371"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Chemical Ecology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Niche differentiation can occur when co-existing populations split through local adaptation to divergent conditions based on biotic or abiotic factors (<xref ref-type="bibr" rid="B29">Hutchinson, 1957</xref>; <xref ref-type="bibr" rid="B28">Holt, 2009</xref>). Consequently, a population can become separated through adaptation to different microhabitats, e.g., by divergent dietary specializations (e.g. <xref ref-type="bibr" rid="B1">Bakovic et&#xa0;al., 2019</xref>), or through phenological separation (e.g. <xref ref-type="bibr" rid="B34">Lin and Hyypp&#xe4;, 2019</xref>). The formation of such barriers to gene flow has the potential to gradually increase reproductive isolation of emerging subpopulations or ecotypes (<xref ref-type="bibr" rid="B12">Coyne and Orr, 2004</xref>). Ecotypes are defined as subpopulations for which the main barriers to gene flow are ecological (<xref ref-type="bibr" rid="B71">Turesson, 1922</xref>; <xref ref-type="bibr" rid="B65">Stronen et&#xa0;al., 2022</xref>). Correlated divergences in host or mate preferences can further increase pre-existing niche differentiation (<xref ref-type="bibr" rid="B28">Holt, 2009</xref>), which then can be reinforced by genetic incompatibilities (<xref ref-type="bibr" rid="B10">Butlin, 1987</xref>; <xref ref-type="bibr" rid="B26">Higgie et&#xa0;al., 2000</xref>). Persistent reproductive isolation is required for the maintenance of ecotypes (<xref ref-type="bibr" rid="B75">Yannic et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B65">Stronen et&#xa0;al., 2022</xref>). Eventually, the long-term coexistence of increasingly diverging ecotypes may lead to sympatric speciation (<xref ref-type="bibr" rid="B12">Coyne and Orr, 2004</xref>; <xref ref-type="bibr" rid="B46">Ortiz-Barrientos et&#xa0;al., 2009</xref>).</p>
<p>While differentiation between populations or strains from different microhabitats may be due to phenotypic plasticity (<xref ref-type="bibr" rid="B76">Yeh and Price, 2004</xref>; <xref ref-type="bibr" rid="B51">Pigliucci, 2005</xref>), genetic divergence between such strains constitutes potential evidence of reduced gene flow (<xref ref-type="bibr" rid="B12">Coyne and Orr, 2004</xref>; <xref ref-type="bibr" rid="B67">Sunamura et&#xa0;al., 2011</xref>). Ecotypes can coexist without clearly separated phenotypes (<xref ref-type="bibr" rid="B41">Menz et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B69">Taylor et&#xa0;al., 2020</xref>), but they cannot be maintained without some degree of reproductive isolation (<xref ref-type="bibr" rid="B28">Holt, 2009</xref>; <xref ref-type="bibr" rid="B65">Stronen et&#xa0;al., 2022</xref>). Unambiguous cases of ecotypes show evidence of phenotypic differentiation that correlates with genetic differentiation (e.g. <xref ref-type="bibr" rid="B41">Menz et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B33">Le Moan et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B75">Yannic et&#xa0;al., 2018</xref>).</p>
<p>However, empirical evidence for ecotypes is generally biased towards plants, fish and mammals, while other taxa, particularly invertebrates, remain largely understudied in this respect (<xref ref-type="bibr" rid="B65">Stronen et&#xa0;al., 2022</xref>). In light of the continuous and prominent decline in insect biodiversity, undermining their tremendous contributions to virtually all ecosystems on earth, this massive oversight appears particularly puzzling (<xref ref-type="bibr" rid="B61">Scudder, 2017</xref>; <xref ref-type="bibr" rid="B13">Crespo-P&#xe9;rez et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B54">Raven and Wagner, 2021</xref>). Therefore, eligible insect model organisms where the discrimination between populations, ecotypes, subspecies and &#x201c;true species&#x201d; can be readily assessed are necessary to properly direct countermeasures against insect biodiversity decline (<xref ref-type="bibr" rid="B1">Bakovic et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B65">Stronen et&#xa0;al., 2022</xref>).</p>
<p>The parasitoid jewel wasp genus <italic>Nasonia</italic> (Hymenoptera: Pteromalidae) has been well-established as an insect model system to study ecological and evolutionary aspects of adaptation (e.g. <xref ref-type="bibr" rid="B32">Koppik et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B62">Shuker, 2023</xref>), reproductive isolation (e.g. <xref ref-type="bibr" rid="B21">Giesbers et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B2">Bell and Bordenstein, 2022</xref>) and evolutionary genetics (e.g. <xref ref-type="bibr" rid="B72">van de Zande et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B47">Pannebakker et&#xa0;al., 2020</xref>). Its most well-known and cosmopolitan species<italic>, Nasonia vitripennis</italic>, has been proposed to be differentiated into two ecotypes distinguishable by their respective microhabitats (<xref ref-type="bibr" rid="B59">Schr&#xf6;der, 2000</xref>; <xref ref-type="bibr" rid="B37">Malec et&#xa0;al., 2021</xref>; <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). Females of this species parasitize a wide array of different fly pupae, most commonly from the genera <italic>Sarcophaga</italic> (flesh flies), <italic>Calliphora</italic> (blowflies) and <italic>Protocalliphora</italic> (bird blowflies). Depending on the microhabitat where these host genera mainly occur, the suggested <italic>N. vitripennis</italic> ecotypes are the &#x201c;nest ecotype&#x201d;, where the wasps primarily parasitize <italic>Protocalliphora</italic> fly pupae on nestlings in bird nest boxes (<xref ref-type="bibr" rid="B14">Darling and Werren, 1990</xref>; <xref ref-type="bibr" rid="B50">Peters and Abraham, 2010</xref>), and the &#x201c;carrion ecotype&#x201d;, where <italic>Calliphora</italic> and <italic>Sarcophaga</italic> fly pupae on vertebrate cadavers are mainly parasitized (<xref ref-type="bibr" rid="B22">Grassberger and Frank, 2004</xref>; <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Schematic overview of the life cycle of <italic>Nasonia vitripennis</italic>. Female wasps locate fly pupae, which can occur in two microhabitats: bird nests or carrion. After localization of the hosts, female wasps inject venom into the host pupa and will oviposit typically 20&#x2013;50 eggs. Larvae hatch from the eggs, and will normally pupate after 3 larval instars (unless an alternative diapause stage is entered under adverse conditions). Adults eclose from pupation within the host pupae. Males chew an exit hole into the host puparium wall and emerge first and will mate with females upon emergence from the host. Figure drawn by Marc Maas.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fevo-11-1232639-g001.tif"/>
</fig>
<p>Ecotype formation in <italic>N. vitripennis</italic> may be reinforced by reduced gene flow due to high levels of natural inbreeding: males are flightless and thus mostly confined to their place of emergence from the host, where they compete for access to mate with the later emerging females (<xref ref-type="bibr" rid="B73">van den Assem et&#xa0;al., 1980</xref>). Due to their gregarious lifestyle, matings then generally occur between siblings of the same patch and are thus characterized by frequent local inbreeding (<xref ref-type="bibr" rid="B24">Grillenberger et&#xa0;al., 2008</xref>). However, females can disperse after being mated for distances of up to 2 km and locate new host patches (<xref ref-type="bibr" rid="B23">Grillenberger et&#xa0;al., 2009</xref>).</p>
<p>A recent study demonstrated very early reproductive barriers between the nest and carrion ecotypes in a sympatric <italic>N. vitripennis</italic> population from Southern Germany, hinting at premating and sexual isolation preceding ecological separation (<xref ref-type="bibr" rid="B37">Malec et&#xa0;al., 2021</xref>). Here, we focus on a sympatric <italic>N. vitripennis</italic> population from the Netherlands and test for potential degrees of separation between the different ecotypes on a phenotypic and population genetic level. We therefore assess the divergence of cuticular hydrocarbon (CHC) surface profiles as a phenotypic indicator for an incipient differentiation concordant with the studied microhabitats. CHC profiles have repeatedly been demonstrated to diverge rapidly in populations according to different ecological conditions (<xref ref-type="bibr" rid="B42">Menzel et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B43">Menzel et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B25">Hartke et&#xa0;al., 2019</xref>). Furthermore, CHC profiles have the potential to be utilized as chemotaxonomic traits to successfully discriminate otherwise indistinguishable sympatric populations of a single species (<xref ref-type="bibr" rid="B68">Takahashi et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B16">Everaerts et&#xa0;al., 2008</xref>) or recently diverged sister species (<xref ref-type="bibr" rid="B18">Finck et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B63">Sprenger et&#xa0;al., 2021</xref>). Notably, CHC profiles were the most apparent phenotypic traits clearly distinguishing the two most recently diverged species of the <italic>Nasonia</italic> genus, <italic>N. giraulti</italic> and <italic>N. oneida</italic> (<xref ref-type="bibr" rid="B55">Raychoudhury et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B74">Werren et&#xa0;al., 2010</xref>). In addition, female CHC profiles contain sexual cues for the males in most <italic>Nasonia</italic> species, triggering courtship and copulation behavior (<xref ref-type="bibr" rid="B64">Steiner et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B8">Buellesbach et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B36">Mair et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B66">Sun et&#xa0;al., 2023</xref>).</p>
<p>Furthermore, we screened the population genetic structure of representative foundresses from the two distinct host microhabitats with established <italic>Nasonia</italic> microsatellite markers for any degree of genetic differentiation. Interestingly, we could not confirm any separation between the ecotypes, neither on the phenotypic nor on the genetic level, hinting at unhindered gene flow between wasps from the carrion and nest microhabitats and strongly suggesting a re-evaluation of the potential of <italic>N. vitripennis</italic> to form truly separated ecotypes.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<label>2</label>
<title>Materials and methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Wasp collection and establishment of experimental strains</title>
<p>Wasps were collected from nest boxes and carrion in a 1.4 &#xd7; 2.5 km field site in the Hoge Veluwe National Park, the Netherlands, in June 2018. Wasps originating from nest boxes were sampled by collecting the fly host pupae from 45 nest boxes after fledging of the birds (<italic>Parus major</italic> L.). The collected host pupae were incubated individually at room temperature, and the emerging wasps were identified as <italic>N. vitripennis</italic> based on morphology.</p>
<p>Wasps originating from carrion were sampled by laying out four deer legs (<italic>Cervus elaphus</italic> L.), baited with mesh bags containing fly pupae (<italic>Calliphora</italic> spp.) in individual containers on a layer of vermiculite. To prevent interference with non-insect carrion feeders, the containers were placed in a 1 m<sup>3</sup> wire cage with a wide mesh, suspended at 1 m above the ground (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure S1</bold>
</xref>). Two cages, each with two deer legs, were placed at two locations in the field site. In those, mesh bags with fly pupae were replaced every 6 days upon which the carrion was visually inspected for the presence of adult wasps. When adult wasps were present on the carrion (we did not observe alive adults in the nest boxes), individual females were isolated directly and were allowed to parasitize <italic>Calliphora</italic> spp. host pupae as foundresses of separate isofemale lines. From the bird nest boxes, fly host pupae were collected and isolated individually in glass vials (11 &#xd7; 63 mm). Upon emergence, a single female from each host was isolated and allowed to parasitize <italic>Calliphora</italic> spp. host pupae for establishing an isofemale line similar to the carrion-derived females. To keep relatedness among isofemale lines low, only one single isofemale line was set up per nest box. After parasitization, individual foundresses of the isofemale lines from both carrions and the nest boxes were stored at &#x2212;80&#xb0;C for molecular analysis.</p>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Chemical analysis and CHC profiling</title>
<p>After approximately 31 laboratory generations, we randomly selected males from five and females from four isofemales lines derived from carrion, as well as males from three and females from four isofemale lines derived from nest boxes, respectively. For each sex from each isofemale line, five respective individual wasps were each extracted in 30 &#xb5;l of MS pure hexane (UniSolv, Darmstadt, Germany) in a GC-vial (Agilent, Santa Clara, California, USA) while being swirled on an orbital shaker (IKA KS 130 Basic, Staufen, Germany) for 10 minutes. Extracts were then transferred to a 250 &#xb5;l conical insert (Agilent, Santa Clara, California, USA) and evaporated under a constant flow of CO<sub>2</sub>. The dried extracts were resuspended with 5 &#xb5;l of an MS pure hexane solution containing 7.5 ng/&#x3bc;l of n-dodecane (EMD Millipore Corp., Billerica, Massachusetts, USA) as an internal standard. Three &#x3bc;l of the extract were injected into a GC-QQQ Triple Quad (GC: 7890B, Triple Quad: 7010B, Agilent, Waldbronn, Germany) with a PAL Autosampler system operating in electron impact ionization mode with 70 eV. The split/splitless injector was operated at 300&#xb0;C in Pulsed splitless mode at 10.42 psi until 2 min with the Purge Flow to Split Vent set at 50 ml/min at 2 min. Separation of compounds was performed on a 30 m &#xd7; 0.25 mm ID &#xd7; 0.25 &#x3bc;m HP-1 Dimethylpolysiloxane column (Agilent J&amp;W GC columns, Santa Clara, California, USA). The temperature program started from 60&#xb0;C, held for 1 min, and increasing by 40&#xb0;C per min to 200&#xb0;C, followed by an increase of 5&#xb0;C per min to 320&#xb0;C, where it was held for 5 min. Helium served as carrier gas with a constant flow of 1.2 ml per min and a pressure of 10.42 psi. CHC peak detection, identification and quantification were performed using Quantitative Analysis MassHunter Workstation Software (Version B.09.00/Build 9.0.647.0, Agilent Technologies, Santa Clara, California, USA). Peaks were identified according to their diagnostic ions and retention indices calculated with a C21&#x2013;C40 alkane standard solution (Merck, Darmstadt, Germany). The pre-defined integrator Agile 2 was used for the peak integration algorithm to allow for maximum flexibility. All peaks were then additionally checked for correct integration and quantification, and, where necessary, re-integrated manually. To standardize the peak areas, they were divided by total peak area sum per chromatogram, resulting in relative ratios. A Principal component analysis was performed based on the relative overall CHC divergence between the putative ecotypes and sexes with the program R, version 4.1.0 (<xref ref-type="bibr" rid="B53">R Core Team, 2020</xref>).</p>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Microsatellite and population genetic analysis</title>
<p>DNA was isolated from ten adult isofemale line foundresses collected from carrion, and from 18 foundresses emerging from the fly hosts collected from the nest boxes (one per nest box) using a standard high-salt chloroform protocol (<xref ref-type="bibr" rid="B38">Maniatis et&#xa0;al., 1982</xref>). A set of 14 established microsatellite loci was used to determine genetic differentiation between all tested individuals from the Hoge Veluwe population (<xref ref-type="bibr" rid="B3">Beukeboom et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B48">Pannebakker et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B31">Koevoets et&#xa0;al., 2012</xref>). Microsatellite details are provided in <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S1</bold>
</xref>. Microsatellite markers were amplified using the Qiagen multiplex PCR kit (Qiagen, Hilden, Germany) according to the manufacturer&#x2019;s recommendations. Amplification was done in 5 &#x3bc;l volumes, PCR conditions were as follows: Denaturation at 95&#xb0;C for 15 min, followed by 30 cycles of 94&#xb0;C for 30 s, 57&#xb0;C for 1.5 min, and 72&#xb0;C for 1 min, followed by a final extension at 72&#xb0;C for 45 min. Fragments were diluted 250:1, separated on an Applied Biosystems 3730 DNA Analyzer (Applied Biosystems, Foster City, CA, USA) and analyzed using Geneious R11 (Biomatters Ltd., Auckland, New Zealand). Hardy-Weinberg equilibrium was calculated for all microsatellite markers using a heterozygosity-based estimator (<italic>G<sub>IS</sub>
</italic>) (<xref ref-type="bibr" rid="B44">Nei, 1987</xref>) and <italic>P</italic>-values based on 9999 permutations. All marker pairs were tested for linkage disequilibrium (<italic>LD</italic>), using a Markov chain method (10,000 dememorization steps, 100 batches, 5,000 iterations) and Fisher&#x2019;s exact test, followed by Bonferroni correction for multiple testing. Genetic diversity parameters, number of alleles (<italic>N<sub>a</sub>
</italic>), effective number of alleles (<italic>N<sub>e</sub>
</italic>), observed heterozygosity (<italic>H<sub>o</sub>
</italic>), expected heterozygosity (<italic>H<sub>e</sub>
</italic>) and the fixation index (<italic>G<sub>IS</sub>
</italic>) were calculated. To quantify the degree of differentiation between wasps collected from carrion and the nest box habitats, we calculated the fixation index <italic>G&#x2019;<sub>ST</sub>
</italic>, which is an <italic>F<sub>ST</sub>
</italic> equivalent that corrects for bias from sampling only a limited number of populations (<xref ref-type="bibr" rid="B44">Nei, 1987</xref>), and <italic>P</italic>-values based on 9999 permutations. Next, we tested for the existence of genetic clusters within the Hoge Veluwe population, using a Principal component analysis (PCA) based on the allele frequencies, and a Bayesian assignment as implemented in the program InStruct 1.0 (<xref ref-type="bibr" rid="B20">Gao et&#xa0;al., 2007</xref>), which is an extension of the STRUCTURE algorithm (<xref ref-type="bibr" rid="B52">Pritchard et&#xa0;al., 2000</xref>) that allows for deviations from the Hardy-Weinberg equilibrium through correction for inbreeding. Because <italic>N. vitripennis</italic> shows high levels of inbreeding (<xref ref-type="bibr" rid="B35">Luna and Hawkins, 2004</xref>; <xref ref-type="bibr" rid="B24">Grillenberger et&#xa0;al., 2008</xref>), it is relevant to account for this in our analysis. Using InStruct, we tested a range of 1&#x2013;12 clusters (<italic>K</italic>), with a burn-in of 100,000 and 1,000,000 MCMC iterations and 20 iterations for each <italic>K</italic>, using the inference of population structure and the selfing rates for subpopulations mode (mode 2). The optimal <italic>K</italic> was inferred from the deviance information criterion (DIC: <xref ref-type="bibr" rid="B19">Gao et&#xa0;al., 2011</xref>). As an alternative method, we estimated the number of clusters using a <italic>K</italic>-means clustering method based on the analysis of molecular variance (AMOVA, <xref ref-type="bibr" rid="B17">Excoffier et&#xa0;al., 1992</xref>; <xref ref-type="bibr" rid="B39">Meirmans, 2012</xref>), for <italic>K</italic>=1&#x2013;12 clusters, with the simulated annealing approach for 1,000,000 steps with 20 random starts. The optimal <italic>K</italic> was inferred from the Bayesian information criterion (BIC). All analyses were performed using GenoDive 3.06 (<xref ref-type="bibr" rid="B40">Meirmans, 2020</xref>), except for the pair-wise linkage analysis between the markers that was done using Genepop 4.7.5 (<xref ref-type="bibr" rid="B56">Raymond and Rousset, 1995</xref>; <xref ref-type="bibr" rid="B57">Rousset, 2008</xref>).</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results</title>
<sec id="s3_1">
<label>3.1</label>
<title>Trapping success on carrion and in nest boxes</title>
<p>In June 2018, a total of 45 nest boxes in the Hoge Veluwe National Park were inspected for the presence or absence of fly pupae. Twenty-six nest boxes (57.7%) contained fly pupae, and of those fly-infested nest boxes, 19 (73%) contained <italic>N. vitripennis</italic> wasps. Sampling on the carrion yielded a total of ten adult <italic>N. vitripennis</italic> females (N=7 and N=3 on each deer leg, respectively).</p>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Chemical analysis</title>
<p>We were able to detect 49 distinct CHC compounds in our sampled <italic>N. vitripennis</italic> isofemale lines representative of both postulated ecotypes. Their identifications or, in ambiguous cases, all potential configurations according to their diagnostic ions, as well as their mean relative quantities per postulated ecotype and each respective sex are given in <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S2</bold>
</xref>. A Principal component analysis only clearly discriminated the two sexes into two distinct clusters, with no recognizable divergence based on postulated ecotype. The first two principal components contributed to 42.6% and 19.2% to the total separation of the chemical profiles, respectively (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>). A graphical overview of relative quantities for each individual CHC compound identified in our analysis separated by sex and postulated ecotype is given in <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Figure S2</bold>
</xref>.</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Principal component analysis (PCA) based on cuticular hydrocarbon extracts from 77 individual <italic>Nasonia vitripennis</italic> wasps of both sexes, representative of the carrion and bird nest box ecotypes. Carrion ecotype: 19 females from 4 isofemale lines, 24 males from five isofemale lines. Bird nest box ecotype: 20 females from four isofemale lines, 14 males from three isofemale lines. The first two principal components contributed 42.6% and 19.2% to the total separation of the samples, respectively.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fevo-11-1232639-g002.tif"/>
</fig>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>No genetic differentiation between <italic>N. vitripennis</italic> wasps from distinct habitats</title>
<p>Microsatellite profiles were generated for 27 foundresses of the isofemale lines derived from carrion (n=9) and nest boxes (n=18). Two females from nest boxes were excluded from further analysis, because seven and four of the microsatellite loci failed to amplify in these individuals, respectively, resulting in a robust dataset of 25 females in total that were genotyped for all 14 established microsatellite loci. Of the 14 microsatellite loci, only two were in Hardy-Weinberg equilibrium (HWE), Nv114 and Nv303 (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S1</bold>
</xref>). The other 12 loci showed significant deviation from HWE, consistent with the generally high inbreeding rates observed in this species (<xref ref-type="bibr" rid="B24">Grillenberger et&#xa0;al., 2008</xref>). No significant linkage disequilibrium was detected between the microsatellite loci. Based on these analyses, we decided to include all 14 loci in our subsequent dataset. Wasps from both microhabitats showed a mean heterozygosity <italic>H<sub>o</sub>
</italic>=0.537 (SD=0.014), and a mean <italic>G<sub>IS</sub>
</italic>=0.309 (SD=0.038) (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>), the latter indicating a heterozygote deficiency, which is likely due to inbreeding. A <italic>G&#x2019;<sub>st</sub>
</italic> analysis showed no genetic differentiation between <italic>N. vitripennis</italic> females collected from nest boxes versus females collected from carrion (<italic>G&#x2019;<sub>st</sub>
</italic>=0.003 (SD=0.007), <italic>P</italic>=0.347). The Bayesian assignment using InStruct found support for <italic>K</italic>=9 genetic clusters (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S3</bold>
</xref>), but these did not diverge according to microhabitat (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). However, the proportions of ancestry estimated by Instruct (q-values) are very similar among the individual wasps, consistent with absence of genetic structure within the Hoge Veluwe population. This is confirmed by the results of the <italic>K</italic>-means clustering, which indicate <italic>K</italic>=1, or a single genetic group for the <italic>N. vitripennis</italic> population at the Hoge Veluwe without separate substructures (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table S4</bold>
</xref>). This is further reflected in a Principal component analysis that showed no distinct genetic clusters according to host habitat <italic>i.e.</italic>, postulated ecotype (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4</bold>
</xref>).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Number of alleles, fixation index and heterozygosity of the analyzed <italic>Nasonia vitripennis</italic> population from the Hoge Veluwe National Park, Netherlands.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="center"/>
<th valign="top" align="left">
<italic>N<sub>a</sub>
</italic>(SD)</th>
<th valign="top" align="left">
<italic>N<sub>e</sub>
</italic>(SD)</th>
<th valign="top" align="left">
<italic>G<sub>IS</sub>
</italic> (SD)</th>
<th valign="top" align="left">
<italic>H<sub>o</sub>
</italic>(SD)</th>
<th valign="top" align="left">
<italic>H<sub>e</sub>
</italic>(SD)</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Nest box</td>
<td valign="top" align="left">9.643 (1.151)</td>
<td valign="top" align="left">5.957 (0.910)</td>
<td valign="top" align="left">0.329 (0.045)</td>
<td valign="top" align="left">0.511 (0.059)</td>
<td valign="top" align="left">0.761 (0.064)</td>
</tr>
<tr>
<td valign="top" align="left">Carrion</td>
<td valign="top" align="left">7.429 (0.810)</td>
<td valign="top" align="left">5.722 (0.726)</td>
<td valign="top" align="left">0.290 (0.067)</td>
<td valign="top" align="left">0.563 (0.075)</td>
<td valign="top" align="left">0.793 (0.065)</td>
</tr>
<tr>
<td valign="top" align="left">Overall</td>
<td valign="top" align="left">11.643 (1.409)</td>
<td valign="top" align="left">5.660 (0.756)</td>
<td valign="top" align="left">0.309 (0.038)</td>
<td valign="top" align="left">0.537 (0.062)</td>
<td valign="top" align="left">0.777 (0.062)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Number of alleles (<italic>N<sub>a</sub>
</italic>), effective number of alleles (<italic>N<sub>e</sub>
</italic>), fixation index (<italic>G<sub>IS</sub>
</italic>), observed heterozygosity (<italic>H<sub>o</sub>
</italic>) and expected heterozygosity (<italic>H<sub>e</sub>
</italic>) as well as standard error are given for wasps collected from either nest boxes or carrion.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Population structure of <italic>Nasonia vitripennis</italic> in the Hoge Veluwe National Park in the Netherlands as calculated with InStruct for optimal number (<italic>K</italic>=9) of genetic clusters. Each individual wasp is represented by a vertical bar and colored according to assignment to one of nine ancestry clusters. Samples are ordered according to cluster assignment and microhabitat.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fevo-11-1232639-g003.tif"/>
</fig>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Principal component analysis (PCA) of the divergence of 14 microsatellite loci analyzed from 25 foundresses collected from carrion (n=9) and bird nest boxes (n=16). Principal component 1 (PC 1) accounted for 9.4% of the total separation, PC 2 for 8%.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fevo-11-1232639-g004.tif"/>
</fig>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<p>Based on our chemical profile analysis as well as our population genetic assessment, we could not detect any degree of separation into ecotypes in the studied <italic>Nasonia vitripennis</italic> population from the Netherlands. Individual isofemale lines derived from host pupae either occurring on bird next boxes or carrion could not be unambiguously differentiated as either ecotype based on distinct chemical profiles or their genetic divergence.</p>
<p>Concerning cuticular hydrocarbon (CHC) divergence, it has been shown that CHC profiles have the potential to locally adapt to divergent ecological conditions within a few generations (<xref ref-type="bibr" rid="B42">Menzel et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B43">Menzel et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B25">Hartke et&#xa0;al., 2019</xref>). CHC differences might also occur due to assortative mating and have been found to be correlated with speciation events in other insects (<xref ref-type="bibr" rid="B60">Schwander et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B11">Chung and Carroll, 2015</xref>). Moreover, CHC profiles have frequently been found as the first and most characteristic phenotypic traits to diverge between populations and evolutionarily young species pairs (<xref ref-type="bibr" rid="B15">Espelie et&#xa0;al., 1990</xref>; <xref ref-type="bibr" rid="B55">Raychoudhury et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B63">Sprenger et&#xa0;al., 2021</xref>). Therefore, it is surprising that we could not detect any congruent CHC divergence separating the two postulated <italic>N. vitripennis</italic> ecotypes. Interestingly, a study focusing solely on bird nest boxes on a wide European latitudinal gradient ranging from Corsica to Finland also did not find any discernible CHC patterns correlating with local population clines (<xref ref-type="bibr" rid="B7">Buellesbach et&#xa0;al., 2022a</xref>). This strongly suggests that CHCs constitute genetically fixed traits with comparably little plasticity for local adaptation in this species (<xref ref-type="bibr" rid="B45">Niehuis et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B9">Buellesbach et&#xa0;al., 2022b</xref>).</p>
<p>Due to the long-standing postulation of the discernibility between the bird and carrion ecotypes of <italic>N. vitripennis</italic> (<xref ref-type="bibr" rid="B22">Grassberger and Frank, 2004</xref>; <xref ref-type="bibr" rid="B50">Peters and Abraham, 2010</xref>; <xref ref-type="bibr" rid="B37">Malec et&#xa0;al., 2021</xref>), our findings that clearly do not support their unambiguous differentiation on a phenotypic and genetic level were unexpected. An important aspect largely neglected in earlier studies conducted on populations of this species is the estimation of how frequent habitat switches can occur in nature. As inseminated female <italic>N. vitripennis</italic> wasps can disperse over distances as far as 2 km (<xref ref-type="bibr" rid="B23">Grillenberger et&#xa0;al., 2009</xref>), steady gene flow between bird nest and carrion populations within these distances, as would be the case in our studied ecosystem in the Netherlands, appears very likely. Another potentially important aspect is the difference in phenology between the two postulated ecotypes: As the occurrence of carrion can be expected to be year-round, the nest ecotype would presumably be restricted to the respective birds&#x2019; breeding season. When this season has passed by the end of spring for most birds, <italic>N. vitripennis</italic> wasps are unlikely to already enter diapause, which usually only occurs later in the year (<xref ref-type="bibr" rid="B58">Saunders, 1965</xref>; <xref ref-type="bibr" rid="B49">Paolucci et&#xa0;al., 2013</xref>). It is thus far unknown whether wasps parasitizing hosts in bird nests during early summer can simply switch to carrion hosts once bird breeding season ends. However, wasps collected from bird nest boxes do readily parasitize carrion-breeding <italic>Calliphora</italic> hosts (<xref ref-type="bibr" rid="B72">van de Zande et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B30">Kalyanaraman et&#xa0;al., 2021</xref>). It is thus unlikely that gene flow between microhabitats is interrupted over long enough periods of time to allow for the establishment of stable and distinct ecotypes in European <italic>N. vitripennis</italic> populations.</p>
<p>Interestingly, Malec et&#xa0;al. recently reported a reduction in F1 offspring between different <italic>N. vitripennis</italic> strains collected in microhabitats corresponding to the postulated ecotypes within a German population, suggesting incipient reproductive barriers (<xref ref-type="bibr" rid="B37">Malec et&#xa0;al., 2021</xref>). However, they did not verify the infection status caused by the naturally occurring <italic>Wolbachia</italic> bacteria in their investigated <italic>N. vitripennis</italic> strains. The strains used in <xref ref-type="bibr" rid="B37">Malec et&#xa0;al. (2021)</xref> had been cultured in the laboratory for over 20 generations. However, maternal <italic>Wolbachia</italic> transmission is not 100% (<xref ref-type="bibr" rid="B27">Hoffmann et&#xa0;al., 1990</xref>; <xref ref-type="bibr" rid="B70">Turelli et&#xa0;al., 1992</xref>) and prolonged laboratory rearing has been reported to result in loss of the <italic>Wolbachia</italic> infection in <italic>N. vitripennis</italic> strains (<xref ref-type="bibr" rid="B47">Pannebakker et&#xa0;al., 2020</xref>). This is crucial, as <italic>Wolbachia</italic>-infected males are incompatible with <italic>Wolbachia</italic>-uninfected females, leading to different degrees of offspring reduction (<xref ref-type="bibr" rid="B6">Breeuwer and Werren, 1990</xref>; <xref ref-type="bibr" rid="B5">Bordenstein and Werren, 1998</xref>; <xref ref-type="bibr" rid="B4">Bordenstein et&#xa0;al., 2001</xref>). Therefore, without accounting for the persistence of <italic>Wolbachia</italic> infections, interpretations of the cause of offspring reduction between strains derived from different ecotypes have to remain very cautious. However, previous population genetic studies indicated gene flow can become limited over larger distances (300 km or further) in separated <italic>N. vitripennis</italic> populations (<xref ref-type="bibr" rid="B23">Grillenberger et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B49">Paolucci et&#xa0;al., 2013</xref>), which could theoretically allow for different degrees of local adaptation to occur. Nevertheless, in the aforementioned study on European <italic>N. vitripennis</italic> clines over a large latitudinal gradient (&gt; 3,500 km), no population-specific mate preference or assortative mating behavior that would have hinted at incipient prezygotic reproductive isolation could be detected (<xref ref-type="bibr" rid="B7">Buellesbach et&#xa0;al., 2022a</xref>). This also suggested that female sexual attractiveness as encoded in the CHC profiles remains constantly detectable, potentially constraining any larger profile divergences at least for the females in <italic>N. vitripennis</italic> (<xref ref-type="bibr" rid="B66">Sun et&#xa0;al., 2023</xref>).</p>
<p>Our results therefore challenge the long-standing assumption of clearly distinguishable ecotypes based on host microhabitats in <italic>N. vitripennis</italic> and invite further, more careful investigations of within-population variation in this cosmopolitan parasitoid species. Future studies could potentially investigate several different populations from more extreme environments, and also take into account the postulated ancestral state of host preference, likely constituting carrion since sampled bird nest boxes are almost always primarily human-made (e.g. <xref ref-type="bibr" rid="B14">Darling and Werren, 1990</xref>; <xref ref-type="bibr" rid="B50">Peters and Abraham, 2010</xref>; <xref ref-type="bibr" rid="B7">Buellesbach et&#xa0;al., 2022a</xref>). Furthermore, natural dispersal rates should be monitored and considered more cautiously to obtain a more robust estimate on the actual degree of gene flow occurring between different host patches.</p>
<p>In conclusion, we could not confirm the differentiation into the nest and carrion ecotype in our sampled <italic>N. vitripennis</italic> population from the Netherlands, neither on the population genetic nor on the phenotypic level assessed through the wasps&#x2019; chemical profiles. Our findings invite a more cautious approach to studying ecotype formation in this model organism for parasitoid wasps and strongly hint at persisting gene flow despite the ecological preference for different host microhabitat patches.</p>
</sec>
<sec id="s5" sec-type="data-availability">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material</bold>
</xref>.</p>
</sec>
<sec id="s6" sec-type="ethics-statement">
<title>Ethics statement</title>
<p>The manuscript presents research on animals that do not require ethical approval for their study.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>Conceptualization: BP, ML. Methodology: BP, JB, ML. Validation: BP, JV, JB. Formal analysis: BP, JV, JB. Investigation: BP, JV, ML, JB. Resources: BP, JB. Data curation: BP, JB. Writing &#x2013; original draft preparation: BP, JB, ML. Writing &#x2013; review and editing: BP, JB, ML. Visualization, BP, JB, ML. Supervision: BP, JB. Project administration: BP, JB. Funding acquisition: BP, JB. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>This research was partially supported by a research grant by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) &#x2013; 427879779 to JB (BU3439/1-1).</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>We thank Marcel Visser and Kees van Oers (KNAW-NIOO), Gerard Driessen, Annika Liefferink and Liset Eendebak for help with the collection of the wasps at Hoge Veluwe National Park, and the Hoge Veluwe management for providing access and permission to collect and deer carrion. We also thank Gabriella Bukovinszkine-Kiss for help with strain maintenance. Frederik Post and Kristina Emke provided invaluable help with chemical data acquisition and analysis. Marc Maas drew the life cycle of <italic>N. vitripennis</italic> in <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>.</p>
</ack>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher's note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fevo.2023.1232639/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fevo.2023.1232639/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet_1.zip" id="SM1" mimetype="application/zip"/>
</sec>
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