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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Ecol. Evol.</journal-id>
<journal-title>Frontiers in Ecology and Evolution</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Ecol. Evol.</abbrev-journal-title>
<issn pub-type="epub">2296-701X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fevo.2023.1214117</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Ecology and Evolution</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Riverbank lupine&#x2019;s (<italic>Lupinus rivularis</italic>) influence on conifer growth, ectomycorrhizal colonization, and neighboring vegetation in coarse sediments left behind after dam removal</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Kardouni</surname>
<given-names>James</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Danilchik Lindsay</surname>
<given-names>Maile</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Labay</surname>
<given-names>Andrew</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Bauman</surname>
<given-names>Jenise M.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2184031"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Washington State Department of Ecology, Water Quality Program</institution>, <addr-line>Bellingham, WA</addr-line>, <country>United States</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Western Washington University, College of the Environment</institution>, <addr-line>Bellingham, WA</addr-line>, <country>United States</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Olympic College, Department of Biology</institution>, <addr-line>Bremerton, WA</addr-line>, <country>United States</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Rebecca McCaffery, United States Department of the Interior, United States</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Charles Halpern, University of Washington, United States; Laura Perry, Colorado State University, United States</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Jenise M. Bauman, <email xlink:href="mailto:Jenise.Bauman@wwu.edu">Jenise.Bauman@wwu.edu</email>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>13</day>
<month>10</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>11</volume>
<elocation-id>1214117</elocation-id>
<history>
<date date-type="received">
<day>28</day>
<month>04</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>18</day>
<month>09</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Kardouni, Danilchik Lindsay, Labay and Bauman</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Kardouni, Danilchik Lindsay, Labay and Bauman</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Introduction</title>
<p>Until recently, much of the Elwha River was inaccessible to anadromous fish species due to the Elwha and Glines Canyon dams. Dam deconstruction resulted in approximately 325 ha of formerly inundated lake beds devoid of natural riparian corridors or adjacent forests. Efforts to restore the vegetation have had varying success. Areas where fine sediments settled along the valley walls quickly regenerated, while coarse terraces were slower to revegetate from plantings and directed seeding. One seeded species, riverbank lupine (<italic>Lupinus rivularis</italic>), quickly established on the coarse-textured terraces. Riverbank lupine is a pioneering species that assimilates nitrogen (N) through N-fixing bacteria; thus, it enriches the soil with bioavailable N and organic matter upon decomposition.</p>
</sec>
<sec>
<title>Methods</title>
<p>The goal of this study was to investigate lupine&#x2019;s influence on conifer establishment in the coarse sediments of the former Lake Mills basin along the Elwha River. Conifers planted 3 years prior to the study in plots with different levels of lupine cover (sparse, medium, or dense) were measured for growth, foliar total nitrogen, and ectomycorrhizal (ECM) root colonization. Soil N, organic matter (OM), and surrounding plant community composition were also evaluated at this time.</p>
</sec>
<sec>
<title>Results</title>
<p>After 3 years, conifers did not statistically differ in height or basal diameter among differing levels of lupine cover. However, conifers in the medium- and dense-cover plots had significantly greater foliar N concentrations (<italic>&#x3b2;</italic> = 0.25, <italic>SE</italic> = 0.08, <italic>p</italic> &lt; 0.001). The roots of conifers in the dense- and medium-cover plots had significantly less ECM colonization than those in the sparse-cover plots (<italic>&#x3b2;</italic> = 0.14, <italic>SE</italic> = 0.03, <italic>p</italic> = 0.03). No differences existed regarding soil total N or OM. Plant community composition differed among lupine cover classes (permutational multivariate analysis of variance (PERMANOVA), (<italic>F</italic>
<sub>(2,21)</sub> = 2.02, <italic>p</italic> = 0.01). Higher lupine cover resulted in lower species richness (<italic>&#x3b2;</italic> = 25.9, <italic>SE</italic> = 0.61, <italic>p</italic> = 0.04).</p>
</sec>
<sec>
<title>Discussion</title>
<p>Based on our findings, the inclusion of native lupine in coarse, N-limiting soils contributes to the N pools without reducing the growth of planted conifers, which may accelerate forest succession leading to closed canopies much faster than passive recovery.</p>
</sec>
</abstract>
<kwd-group>
<kwd>companion planting</kwd>
<kwd>restoration</kwd>
<kwd>soil development</kwd>
<kwd>vegetation</kwd>
<kwd>cover crop</kwd>
</kwd-group>
<counts>
<fig-count count="3"/>
<table-count count="1"/>
<equation-count count="1"/>
<ref-count count="98"/>
<page-count count="11"/>
<word-count count="6183"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Conservation and Restoration Ecology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>The environmental impacts of dams on forest-river processes have been well documented (<xref ref-type="bibr" rid="B35">Hall et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B73">Reidy Liermann et&#xa0;al., 2012</xref>) and include alterations to aquatic animal populations, riparian vegetation, hydrology, and river deltas (<xref ref-type="bibr" rid="B48">Li et&#xa0;al., 1987</xref>; <xref ref-type="bibr" rid="B43">Jansson et&#xa0;al., 2000</xref>; <xref ref-type="bibr" rid="B81">Sharma, 2001</xref>; <xref ref-type="bibr" rid="B64">Perry et&#xa0;al., 2016</xref>). Damming rivers in the Pacific Northwest (PNW) obstructs many historic anadromous fish migration routes, leading to major species declines (<xref ref-type="bibr" rid="B24">Duda et&#xa0;al., 2008</xref>). Riparian and upland forests are inundated through the creation of reservoirs that impede downstream flow and sediment exchange and cause deeply channelized riverbeds that become disconnected from floodplains (<xref ref-type="bibr" rid="B79">Shafroth, 1999</xref>; <xref ref-type="bibr" rid="B75">Rood and Mahoney, 2000</xref>). Further, dams decrease the delivery of large woody debris from forests to riverine systems, which negatively affects floodplain, delta, and instream habitat complexity, and the nearshore environment (<xref ref-type="bibr" rid="B2">Andersson et&#xa0;al., 2000</xref>; <xref ref-type="bibr" rid="B34">Gregory et&#xa0;al., 2002</xref>). Inhibiting the passage of anadromous fish affects the overall health of riparian ecosystems by limiting the transfer of marine-derived nutrients to adjacent forests (<xref ref-type="bibr" rid="B40">Helfield and Naiman, 2001</xref>; <xref ref-type="bibr" rid="B23">Drake et&#xa0;al., 2002</xref>).</p>
<p>Until recently, much of the Elwha River Basin was inaccessible to sea-run fish due to the Elwha and Glines Canyon dams. These dams blocked access to 90% of the spawning habitat, impeded sediment transfer to the nearshore, and degraded stream and riparian habitat (<xref ref-type="bibr" rid="B65">Pess et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B78">Shaffer et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B25">Duda et&#xa0;al., 2011</xref>). Despite the environmental impact, the two dams operated with little regulation for over 50 years until the Federal Power Act (late 1960s&#x2013;1970s) required the owner to license the dams with the Federal Energy Regulatory Commission (<xref ref-type="bibr" rid="B76">Sadin and Vogel, 2011</xref>). This required maintenance for structural integrity and construction of fish passageways (<xref ref-type="bibr" rid="B77">Service, 2011</xref>). The Elwha River Ecosystem and Fisheries Restoration Act was enacted in 1992, requiring dam removal to restore riverine habitats, native salmon runs, and other ecosystem processes (<xref ref-type="bibr" rid="B21">DOI (U.S. Department of Interior) et al., 1996</xref>; <xref ref-type="bibr" rid="B97">Winter and Crain, 2008</xref>). The costs/benefit analysis, combined with the potential to restore the Lower Elwha Klallam Tribe&#x2019;s salmon runs, began to sway public and political opinion in favor of dam removal (<xref ref-type="bibr" rid="B34">Gregory et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B24">Duda et&#xa0;al., 2008</xref>).</p>
<p>The deconstruction of both dams and lake drawdown was completed by 2014, restoring access to the upper river and marking the largest dam removal project to date in the United States. Given the unprecedented nature of the large-scale dam removal, there was considerable uncertainty about how the biota would respond to the dewatering of the two reservoirs, which were estimated to store ~21,000,000 m<sup>3</sup> of sediment prior to removal (<xref ref-type="bibr" rid="B94">Warrick et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B50">Major et&#xa0;al., 2017</xref>). A major concern was the impact on terrestrial and aquatic habitats of this increased sediment load (<xref ref-type="bibr" rid="B66">Pizzuto, 2002</xref>; <xref ref-type="bibr" rid="B86">Stanley and Doyle, 2003</xref>). During drawdown, coarse-grained terraces approximately 3.3 to 7 m thick formed along the Lake Mills bed above the Glines Canyon dam (<xref ref-type="bibr" rid="B26">East et&#xa0;al., 2015</xref>). These terraces, composed of unconsolidated sand, gravel, and cobble, resulted in novel landforms perched above the hyporheic zone and situated between the riparian and forest corridors along the Elwha River (<xref ref-type="bibr" rid="B7">Bauman and Kardouni, 2018</xref>).</p>
<p>Revegetating these landforms, a fundamental goal of the Elwha River and Ecosystem Restoration Project, required the restoration of river-forest processes and native communities while limiting the establishment of non-native species (<xref ref-type="bibr" rid="B22">DOI National Park Service, 2015</xref>). Revegetation plans were designed to promote rapid succession to native forests, thus limiting erosion, regulating water temperature, and providing critical habitats (<xref ref-type="bibr" rid="B11">Chenoweth et&#xa0;al., 2011</xref>). In the Lake Mills Basin of the Elwha River, 44.0 ha of newly exposed sediments were actively revegetated from 2013 to 2015. This included broadcasting 2,800 kg of native seed and planting 205,000 herbaceous and woody plants representing 64 species (<xref ref-type="bibr" rid="B12">Chenoweth et&#xa0;al., 2022</xref>). Conifers such as Douglas fir (<italic>Pseudotsuga menziesii</italic> Mirb Franco), grand fir (<italic>Abies grandis</italic> [Douglas ex D. Don] Lindl.), and western white pine (<italic>Pinus monticola</italic> Douglas ex D. Don) were incorporated into the planting plan and are considered important indicators of forest recovery, as well as iconic species to the PNW forests (<xref ref-type="bibr" rid="B29">Franklin, 1988</xref>; <xref ref-type="bibr" rid="B80">Shafroth et&#xa0;al., 2002</xref>).</p>
<p>One seeded forb species, native riverbank lupine (<italic>Lupinus rivularis</italic> Douglas ex Lindl.), was included in the seed mix and thrived in the coarse sediments along the Lake Mills terraces (<xref ref-type="bibr" rid="B12">Chenoweth et&#xa0;al., 2022</xref>). As a legume, it assimilates nitrogen (N) through the endosymbiotic association with <italic>Rhizobium</italic>, a N-fixing bacterium (<xref ref-type="bibr" rid="B85">Staniewski, 1970</xref>). <xref ref-type="bibr" rid="B57">Myrold and Huss-Danell (2003)</xref> demonstrated that N-fixing species such as lupine can enhance N availability and organic matter in nutrient-limited soils (<xref ref-type="bibr" rid="B38">Halvorson et&#xa0;al., 1991</xref>). Riverbank lupine is an annual, biennial, or short-lived perennial that can grow up to 150 cm in height and acts as a pioneer species adapted to sandy or gravelly soils (<xref ref-type="bibr" rid="B16">Darris and Young-Mathews, 2012</xref>). The 2-to-3-year life cycle of riverbank lupine starts with a vegetative phase followed by seeding and senescence with subsequent grow-back periods by seeded progeny.</p>
<p>One of the most well-studied examples of lupine colonization was in plant successional studies conducted after the eruption of Mount Saint Helens in the Pacific Northwest region of the United States. <italic>Lupinus lepidus</italic> Douglas ex Lindl. was the first colonizing herbaceous plant and formed dense to patchy colonies within a decade after the eruption (<xref ref-type="bibr" rid="B18">del Moral et&#xa0;al., 1995</xref>). Its presence was shown to have both facilitative and inhibitory effects on invading plant species, where living colonies inhibited ruderal species, while dead lupine patches facilitated recruitment (<xref ref-type="bibr" rid="B56">Morris and Wood, 1989</xref>). Elsewhere at Mount Saint Helens, <xref ref-type="bibr" rid="B20">del Moral and Rozzell (2005)</xref> demonstrated that <italic>L. lepidus</italic> inhibited colonization of forbs in mature lupine colonies. However, older colonies demonstrated a subsequent increase in plant richness and diversity. Further, varying levels of lupine allowed different sets of species to be established, suggesting that variation in lupine abundance may lead to different successional trajectories (<xref ref-type="bibr" rid="B20">del Moral and Rozzell, 2005</xref>; <xref ref-type="bibr" rid="B19">del Moral, 2007</xref>). As lupine densities gradually decrease, it is hypothesized that their legacy will contribute to soil development and ultimately accelerate plant succession (<xref ref-type="bibr" rid="B91">Vitousek et&#xa0;al., 1987</xref>; <xref ref-type="bibr" rid="B19">del Moral, 2007</xref>). Therefore, developing our understanding of lupine during primary succession may be an important component of forest restoration projects given its adaptability, ability to facilitate the establishment of neighboring plants, and N-fixing capability (<xref ref-type="bibr" rid="B9">Bishop, 2002</xref>).</p>
<p>The planting of native tree seedlings with and into herbaceous cover is common in restoration; however, not all N-fixing herbaceous species facilitate the establishment of neighboring trees (<xref ref-type="bibr" rid="B95">Weidlich et&#xa0;al., 2020</xref>). Previous studies utilizing various <italic>Lupinus</italic> species have illustrated positive tree growth response and increased N acquisition (<xref ref-type="bibr" rid="B68">Prietzel et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B53">Mauer et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B61">Old&#x159;ich et&#xa0;al., 2013</xref>). Other projects have also shown that neighboring vegetation acts as &#x201c;nurse plants&#x201d; that moderate soil temperatures, increase water and nutrient availability, and promote microbial interactions (<xref ref-type="bibr" rid="B8">Bertness and Callaway, 1994</xref>; <xref ref-type="bibr" rid="B71">Raffaele and Veblen, 1998</xref>; <xref ref-type="bibr" rid="B28">Flores and Jurado, 2003</xref>). <italic>L. lepidus</italic> has also been reported to stimulate microbial activity in primary successional soils at Mount Saint Helens (<xref ref-type="bibr" rid="B38">Halvorson et&#xa0;al., 1991</xref>). Ectomycorrhizal fungi are key components of PNW forest soils, forming symbioses with conifers (<xref ref-type="bibr" rid="B47">Kranabetter et&#xa0;al., 2015</xref>). ECM fungi perform a variety of functions that contribute to the establishment, survivability, and resilience of planted seedlings (<xref ref-type="bibr" rid="B52">Massicotte et&#xa0;al., 1999</xref>; <xref ref-type="bibr" rid="B84">Smith and Read, 2008</xref>). Mature soils typically support diverse and abundant fungal communities essential to forest health (<xref ref-type="bibr" rid="B4">Balestrini et&#xa0;al., 2016</xref>). However, dam removal and deposition of coarser sediments may not be conducive to the formation of these symbioses, thus limiting tree establishment after dam removal (<xref ref-type="bibr" rid="B14">Cortese and Bunn, 2017</xref>). Therefore, lupine&#x2019;s presence may facilitate soil development to promote ECM colonization of conifer roots, thereby supporting plant establishment and native plant community recovery.</p>
<p>In this study, we explored how varying densities of riverbank lupine affected the performance of planted conifers (Douglas fir, grand fir, and western white pine), ECM root colonization, soil N and organic matter (OM), and neighboring plant communities in coarse substrates on the exposed terraces of Lake Mills along the Elwha River. We hypothesized that greater lupine densities would result in greater conifer growth, foliar N concentrations, and greater ECM taxonomic richness and colonization. We also hypothesized that greater lupine densities would yield greater C:N, OM, and N content in coarse sediment. Finally, we hypothesized that plant species richness would be lower and community composition would differ in areas of greater vs. lesser lupine density. Documenting species interactions that accelerate succession by aiding the growth of conifers and the development of native plant communities and soils may help future projects that will have to manage the revegetation of coarse sediments left behind after dam removal.</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and methods</title>
<sec id="s2_1">
<title>Study area</title>
<p>The field study was located in Olympic National Park (ONP) along the Elwha River at the location of the former Lake Mills reservoir behind the Glines Canyon dam (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). The dam was removed over the course of 3 years, and work was completed in 2014. Biologists at ONP and Lower Elwha Klallam Tribe implemented the Elwha River and Ecosystem Restoration Project, which had multiple restoration goals: establishing native vegetation to accelerate forest succession, controlling erosion, regulating water temperature, creating habitat, and limiting exotic plant invasion (<xref ref-type="bibr" rid="B11">Chenoweth et&#xa0;al., 2011</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Western terraces formed after the drawdown of Lake Mills along the Elwha River located 22 river km from the mouth. This area was dewatered between 2012 and 2014 via the removal of the Glines Canyon dam. The multiple southwestern terraces were comprised of coarse sediment, sand, and cobble and were actively planted and seeded between 2013 and 2014 with study plots established in 2017. Twenty-four study plots represent three distinct densities of lupine: green = dense (76% lupine cover), orange = medium (58% lupine cover), and red = sparse (15% lupine cover). Map provided by Alex Harnick.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fevo-11-1214117-g001.tif"/>
</fig>
<p>The study area occupied multiple southwestern terraces approximately 1.6 km from the former dam (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). Conifers were grown in the greenhouse for 3 to 4 years, planted on the restoration site, and grew for approximately 3 years prior to our study in 2017. Areas where trees and shrubs were planted received 430 seeds per square meter from the ONP revegetation crew between 2013 and 2014. Seed mixtures contained a combination of 10 locally harvested and produced grass and forb species at the following quantities: common yarrow (<italic>Achillea millifolium</italic>; 44.2 kg), spiked bentgrass (<italic>Agrostis exarata</italic>; 4.0 kg), Suksdorf&#x2019;s sagewort (<italic>Artemisia suksdorfii</italic>; 69.2 kg), Pacific brome (<italic>Bromus pacificus</italic>; 933.5 kg), sedges (<italic>Carex pachystachya</italic> and <italic>Carex deweyana</italic>; 202.4 kg combined), slender hairgrass (<italic>Deschampsia elongata</italic>; 75.1 kg), blue wild-rye (<italic>Elymus glaucus</italic>; 1,367.0 kg), Oregon sunshine (<italic>Eriophyllum lanatum</italic>; 70.1 kg), and riverbank lupine (<italic>L. rivularis</italic>; 59.5 kg; <xref ref-type="bibr" rid="B12">Chenoweth et&#xa0;al., 2022</xref>). Lupine was one of the few species that grew vigorously and spread to dominate many restoration areas. However, species were not seeded uniformly, and lupine was established at varying densities along the terraces (J. Chenoweth, per. comm).</p>
<p>Twenty-four plots (8 m &#xd7; 8 m) were established to capture the range of lupine cover using the transitional zones where lupine is abundant in high to low densities along the western terraces of the Lake Mills reservoir bed (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). Plots were assigned by visual assessment based on relative cover and assigned one of three density classes: sparse, medium, or dense (eight plots each). Cover-class estimates of lupine abundance confirmed significant differences in the mean cover of lupine among density classes in 8-m<sup>2</sup> plots: dense = 76% ( &#xb1; 0.04%, medium = 58% ( &#xb1; 0.04%), and sparse (15% &#xb1; 0.02%) (<italic>F</italic>
<sub>(2,21)</sub> = 72.94, <italic>p</italic>&lt; 0.001).</p>
<p>Each plot contained approximately 8&#x2013;10 living conifers consisting of Douglas fir (<italic>P. menziesii</italic>), grand fir (<italic>A. grandis</italic>), and western white pine (<italic>P. monticola</italic>). After each plot was established, all living conifers were inventoried and numbered. From among the trees in each plot, three were randomly selected, yielding a total of 36 Douglas fir, 21 grand fir, and 15 western white pine. Each tree was assessed for its growth (height and basal diameter), foliar N, and ECM colonization. Soil N and OM and neighboring vegetation were also assessed (described below).</p>
</sec>
<sec id="s2_2">
<title>Conifer height, diameter, foliar N, and ECM colonization</title>
<p>Conifer height and basal diameter were measured in October 2018. Height (nearest cm) was measured from the ground surface to the top of the apical bud. Basal diameter (nearest mm) was measured approximately 2 cm above the soil surface using a mechanical caliper. At the beginning of the dormant season (October 2018) when foliar N concentrations had stabilized (<xref ref-type="bibr" rid="B39">Harrison et&#xa0;al., 2011</xref>), a small foliar sample (3&#x2013;5 cm length) of the current year&#x2019;s growth was taken from each tree by clipping a branch tip. Samples were oven-dried for 1 week at approximately 45&#xb0;C, ground to a fine powder using a mortar and pestle, and placed in a desiccant chamber for sample preservation. Foliar N concentrations were measured at the Western Washington University, Bellingham campus, using the Thermo Scientific Flash EA1112 Elemental Analyzer (Thermo Electron Corporation, Milan, Italy).</p>
<p>During growth and foliar tissue collection, root tips were excavated from each tree for ECM analysis. These sites were extremely rocky and difficult to sample with cores or probes. Therefore, sediments and rocks were removed with a spade to expose the conifer root system by carefully trenching approximately 50 cm from the base of each seedling to a depth of 25 cm and a width of 45 cm. Approximately three to five root segments that were 10&#x2013;12 cm long and 1&#x2013;3 mm in diameter were removed, placed in a plastic bag within a cooler, returned to the laboratory, and stored at 4&#xb0;C until further processing (described below). At the same time, soil samples for N analysis were extracted (approximately 0.50 L) using a spade to a depth of roughly 18 cm adjacent to the roots of each tree.</p>
</sec>
<sec id="s2_3">
<title>Vegetation richness and community composition assessment</title>
<p>Vegetation composition was recorded in a circular, 2-m<sup>2</sup> quadrat centered on selected trees. All plant taxa were identified to species, if possible, and plant abundance was visually estimated by cover class: 1 (&lt;1%), 2 (1% to 10%), 3 (11% to 25%), 4 (26% to 50%), 5 (51% to 75%), 6 (76% to 90%), and 7 (&gt;90%). Species richness was expressed as the number of species accumulated across the three quadrats. All plants were identified to species using <xref ref-type="bibr" rid="B42">Hitchcock and Cronquist (1973)</xref> and <xref ref-type="bibr" rid="B67">Pojar and MacKinnon (1994)</xref>. Species were classified as native or introduced (whether naturalized or not). Botanical nomenclature and nativity followed the plant profile descriptions outlined by the United States Department of Agriculture, PLANTS Database (<xref ref-type="bibr" rid="B89">USDA and NRCS, 2023</xref>). Species richness included all planted, seeded, or naturally recruited species within each quadrat. <italic>L. rivularis</italic> and any planted trees were excluded from the community-level analyses (described below).</p>
</sec>
<sec id="s2_4">
<title>Soil texture/particle size distribution</title>
<p>To account for the heterogeneity of the sediment, the soil-particle size distribution in each quadrat was assessed. Particle size-class data were collected at 10-cm intervals along two 1.6-m perpendicular transects per quadrat (36 counts per quadrat). The Wentworth scale was used to classify each randomly selected particle by length along the shorter axis (<xref ref-type="bibr" rid="B96">Wentworth, 1922</xref>; <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;1</bold>
</xref>). The median particle size in each quadrat was determined and assigned as a categorical variable from the Wentworth scale. The average length of each Wentworth size class was determined and assigned to the median of the particle count as a numeric value. Small particle sizes such as sands (0.13 to 1 mm) and silt (&lt;0.13 mm) were not measured directly but were determined by rubbing the selected particles between finger and thumb, with silts being smoother to the touch than sands.</p>
</sec>
<sec id="s2_5">
<title>Soil organic matter and nitrogen</title>
<p>Soil collection for OM content was performed by taking the first 3 cm of sediment in four locations per quadrat and compositing them (n = 24; 250 g per composite sample). At the time of sampling, soils were placed in sealed bags after collection, and mass was determined pre- and post-drying. Samples were placed in a drying oven at 45&#xb0;C for 1 week. Soil OM was measured using weight-loss-on ignition (<xref ref-type="bibr" rid="B93">Wang et&#xa0;al., 2001</xref>). Dried samples were weighed, then heated at 540&#xb0;C for 5 hours in a Nanbei muffle furnace, and then weighed again to calculate OM content (%). After ashing, each sample was weighed to calculate the difference between dry and burned composites, indicating the OM (g) content of the soil sample. A portion of each composite sample was used to determine total N (%). Subsamples were ground to a powder with a Spex Mill grinder, and N content was determined with a Thermo Scientific Flash EA1112 Elemental Analyzer (Thermo Electron Corporation, Milan, Italy).</p>
</sec>
<sec id="s2_6">
<title>Ectomycorrhizal colonization and identification</title>
<p>In the laboratory, root tips were washed and placed in a Petri dish in autoclaved, distilled water. Roots were cut into 3-cm segments, and 100 randomly selected root tips per tree were scored for presence/absence of ECM (i.e., presence/absence of a fungal sheath; <xref ref-type="bibr" rid="B82">Simard et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B52">Massicotte et&#xa0;al., 1999</xref>). ECM colonization was expressed as the percentage of root tips with a fungal sheath. A 3-mm segment of ECM root tip was homogenized using a mortar and pestle, and DNA was extracted using appropriate buffers and filter columns provided by QIAGEN<sup>&#xae;</sup> DNeasy Plant Pro Kit per manufacturer&#x2019;s protocol (QIAGEN, Germantown, MD, USA). Approximately 10 ng of this DNA was used for PCR amplification using primers ITS1-F (5&#x2032; cttggtcatttagaggaagtaa 3&#x2032;) and ITS4 (5&#x2032; tcctccgcttattgatatgc 3&#x2032;; <xref ref-type="bibr" rid="B32">Gardes and Bruns, 1993</xref>). PCRs were based on the following concentrations for a 25-&#x3bc;l reaction: 12.5 &#x3bc;l of GoTaq&#xae; Green Master Mix (Promega, Madison, WI, USA), 0.25 &#x3bc;l of 25 &#x3bc;M of each primer, 11 &#x3bc;l of molecular grade water, and 1 &#x3bc;l of DNA template. Temperature cycling was accomplished using GeneAmp PCR System 9700, which allowed for a programmable Thermal Cycler Heating regimen (described in <xref ref-type="bibr" rid="B6">Bauman et&#xa0;al., 2022</xref>).</p>
<p>Positive PCR products were confirmed using gel electrophoresis and purified using a Wizard&#xae; SV 96 Genomic DNA Purification System (Promega, Madison, WI, USA). DNA concentration was quantified using a Thermo Scientific 2000 1-position Spectrophotometer (Thermo Fisher Scientific, Pittsburg, PA, USA) prior to sequencing. Sanger sequencing was performed using the Applied Biosystems ABI Prism 3730 DNA Analyzer (Retrogen Inc., San Diego, CA, USA). The DNA sequences were analyzed and edited using Retrogen Inc. software. To identify the fungus found on roots, internal transcribed spacer (ITS) sequences from samples were compared with those in the GenBank using the BLAST search (<xref ref-type="bibr" rid="B1">Altschul et&#xa0;al., 1997</xref>). The genus of each fungus reported in this study was based on the best matches of those in the GenBank with a &gt;97% ITS sequence similarity as a threshold.</p>
</sec>
<sec id="s2_7">
<title>Statistical approach</title>
<p>Linear mixed-effects models (<xref ref-type="bibr" rid="B98">Zuur et&#xa0;al., 2007</xref>) were used to assess the relationships between relative abundance of lupine (cover class) and tree height (cm), tree basal diameter (mm), ECM root colonization (%), foliar and soil C:N, foliar and soil N (%), soil OM (%), species richness, and number of non-native species. Lupine cover class was the fixed factor in the model. Tree species and median soil particle size class comprised the random factors to account for varying genotypes and heterogeneity of substrate, respectively. In its simplest form, the linear mixed-effects model can be written as follows:</p>
<disp-formula>
<mml:math display="block" id="M1">
<mml:mrow>
<mml:msub>
<mml:mi>Y</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
<mml:mi>k</mml:mi>
<mml:mi>l</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:mi>&#x3bc;</mml:mi>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>S</mml:mi>
<mml:mi>j</mml:mi>
</mml:msub>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>i</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
<mml:mi>k</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>&#x3f5;</mml:mi>
<mml:mrow>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>i</mml:mi>
<mml:mi>j</mml:mi>
<mml:mi>k</mml:mi>
<mml:mo stretchy="false">)</mml:mo>
<mml:mi>l</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
</disp-formula>
<p>where <italic>Y</italic> is the response variable, <italic>L<sub>i</sub>
</italic> is the fixed effect of lupine cover class (dense, medium, or sparse), <italic>S</italic> is the random effect of median soil particle size class using the Wentworth scale, <italic>T</italic> is the random effect of tree species nested within the lupine cover class, &#x3bc; is the true mean response among all experimental units, and <italic>&#x3f5;</italic> is residual error.</p>
<p>Evaluation of mixed-effects model terms was performed using ANOVA tests and posterior predictive simulation to make an informed judgment on model fit using lme4: mixed-effects modeling with R (<xref ref-type="bibr" rid="B33">Gelman and Hill, 2006</xref>; <xref ref-type="bibr" rid="B5">Bates et&#xa0;al., 2015</xref>). The ANOVA tested for the significance of the fixed and random effects on each response variable (&#x3b1; = 0.05). The Welch&#x2013;Satterthwaite equation was used to calculate the approximate degrees of freedom. Significant ANOVA products were evaluated for differences among lupine cover classes using Fisher&#x2019;s least significant difference (LSD) pairwise comparisons. Fisher&#x2019;s LSD procedure reduces the risk of false-positive judgments when the number of planned comparisons is small, as in this study (<xref ref-type="bibr" rid="B51">Marcus et&#xa0;al., 1976</xref>; <xref ref-type="bibr" rid="B46">Keppel, 1991</xref>; <xref ref-type="bibr" rid="B54">Meier, 2006</xref>; <xref ref-type="bibr" rid="B31">Gamst et&#xa0;al., 2008</xref>). The posterior predictive simulation (predictive power %) of the model was examined by generating an ensemble of simulations (n = 1,000) and observing how often the model predictions fell within the inner quartile range of the observed data to examine model fitness (<xref ref-type="bibr" rid="B33">Gelman and Hill, 2006</xref>).</p>
<p>To assess parametric test assumptions, all data were examined for normality and homoscedasticity using the Shapiro&#x2013;Wilks and Levene&#x2019;s tests, respectively. To achieve equal variance, transformations were performed on soil particle size (<italic>&#x3c8;</italic>; numeric class value squared) and ECM abundance (square root). Particle size gradation has a logarithmic scale (log<sub>2</sub>) since it doubles between each size class when expressed metrically as a length. Therefore, log<sub>2</sub> was applied to the mean value for each particle bin level to produce <italic>&#x3c8;</italic> (<xref ref-type="bibr" rid="B10">Bunte and Abt, 2001</xref>). All statistical analyses were performed using the <xref ref-type="bibr" rid="B72">R Core Team (2013)</xref>.</p>
<p>Permutational multivariate analysis of variance (PERMANOVA) was used to compare community composition among lupine cover classes. Planted trees and rare species (those with&lt;1% cover) were excluded from the analysis. PERMANOVA was performed using the adonis function in the vegan package in R (<xref ref-type="bibr" rid="B60">Oksanen et&#xa0;al., 2010</xref>). The compositional variation among lupine cover classes was illustrated graphically with a non-metric multidimensional scaling (NMDS) ordination of a plot &#xd7; species-abundance matrix using cover-class midpoints. The analysis was run with the metaMDS function in R using Bray&#x2013;Curtis as the measure of dissimilarity (<xref ref-type="bibr" rid="B60">Oksanen et&#xa0;al., 2010</xref>). Plant species cover values were standardized via Wisconsin double standardization to improve results by equalizing emphasis among sample units and species. With the use of the indicspecies package, a multipattern analysis was used to identify the set of species with the highest association value with the perspective lupine cover classes using the multipatt function (<xref ref-type="bibr" rid="B17">De C&#xe1;ceres and Legendre, 2009</xref>). A multi-level pattern analysis allowed species to be indicators of the three lupine cover classes by calculating an indicator value based on the product of the species&#x2019; relative abundance and relative frequency within each plot. The significance was determined by &#x3b1; = 0.05 for all analyses performed for this study.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>Conifer growth, foliar N concentrations, soils, and ECM colonization</title>
<p>Tree height was statistically similar among the three lupine cover classes: dense (35.7 &#xb1; 3.4 cm), medium (39.0 &#xb1; 2.4 cm), and sparse (33.0 &#xb1; 2.0 cm). Basal diameter followed the same non-significant trend when compared: dense cover (10.2 &#xb1; 0.6 mm), medium cover (9.7 &#xb1; 0.5 mm), and sparse cover (11.0 &#xb1; 0.6 mm). Foliar N concentrations did differ; conifers in dense- (1.8% &#xb1; 0.12%) and medium-cover (1.6% &#xb1; 0.09%) classes had higher concentrations of foliar N than those in sparse cover (1.3% &#xb1; 0.08%; <italic>&#x3b2;</italic> = 0.25, <italic>SE</italic> = 0.08, <italic>p</italic>&lt; 0.001; <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Response variables for which lupine cover class was a significant predictor in the mixed-effects models: <bold>(A)</bold> foliar N, <bold>(B)</bold> percent ectomycorrhizal (ECM) root colonization, and <bold>(C)</bold> species richness (mean number of species per 2-m<sup>2</sup> quadrat). The modeled intercept and standard error were included to offer a visual comparison of measured (actual) vs. predicted (model). At the top of each plot, the &#x201c;predict&#x201d; value (%) quantifies the predictive power of the model, and the <italic>p</italic>-value indicates model significance. Treatments that do not share the same letter are significantly different (&#x3b1; = 0.05).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fevo-11-1214117-g002.tif"/>
</fig>
<p>Soil OM did not differ among the cover classes and averaged 0.02% &#xb1; 0.001%, regardless of the density. Similarly, total soil N did not differ statistically: dense cover (1.8% &#xb1; 0.11%), medium cover (1.6% &#xb1; 0.09%), and sparse cover (1.3% &#xb1; 0.08%). None of the response variables showed significant variation related to median soil particle size or tree species (random effects in the mixed models).</p>
<p>ECM root colonization was greater in plots with sparse lupine cover (0.31% &#xb1; 0.08%) than in plots with dense-cover (0.12% &#xb1; 0.05%) and medium-cover plots (0.12% &#xb1; 0.04%; <italic>&#x3b2;</italic> = 0.14, <italic>SE</italic> = 0.03, <italic>p</italic> = 0.03; <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref>). Nine fungal taxa were detected on conifer roots (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). The most frequent were <italic>Thelephora terrestris</italic> and <italic>Wilcoxina mikolae</italic>. <italic>Suillus luteus</italic>, <italic>Tuber pacificum</italic>, <italic>Hebeloma velutipes</italic>, and <italic>Rhizopogon</italic> were also present, but less common. Non-ECM taxon included a pathogen (<italic>Phialocephala</italic> sp.) and two endophytes, one in the order Helotiales and the second a species of Leptosphaeria (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>List of ectomycorrhizal (ECM) fungi sampled from the roots of three conifer species planted on the dewatered terraces of Lake Mills in the Elwha River Valley.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">ECM taxa</th>
<th valign="middle" align="center">Proportion</th>
<th valign="middle" align="center">Function</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="middle" align="left">
<italic>Thelephora terrestris</italic>
</td>
<td valign="middle" align="center">0.56</td>
<td valign="middle" align="center">ECM</td>
</tr>
<tr>
<td valign="middle" align="left">
<italic>Wilcoxina mikolae</italic>
</td>
<td valign="middle" align="center">0.16</td>
<td valign="middle" align="center">ECM</td>
</tr>
<tr>
<td valign="middle" align="left">
<italic>Suillus luteus</italic>
</td>
<td valign="middle" align="center">0.05</td>
<td valign="middle" align="center">ECM</td>
</tr>
<tr>
<td valign="middle" align="left">
<italic>Tuber pacificum</italic>
</td>
<td valign="middle" align="center">0.04</td>
<td valign="middle" align="center">ECM</td>
</tr>
<tr>
<td valign="middle" align="left">
<italic>Hebeloma velutipes</italic>
</td>
<td valign="middle" align="center">0.03</td>
<td valign="middle" align="center">ECM</td>
</tr>
<tr>
<td valign="middle" align="left">
<italic>Rhizopogon</italic> sp.</td>
<td valign="middle" align="center">0.01</td>
<td valign="middle" align="center">ECM</td>
</tr>
<tr>
<td valign="middle" align="left">
<italic>Phialocephala</italic> sp.</td>
<td valign="middle" align="center">0.01</td>
<td valign="middle" align="center">Pathogen</td>
</tr>
<tr>
<td valign="middle" align="left">
<italic>Leptosphaeria</italic> sp.</td>
<td valign="middle" align="center">0.01</td>
<td valign="middle" align="center">Endophyte</td>
</tr>
<tr>
<td valign="middle" align="left">Helotiales</td>
<td valign="middle" align="center">0.01</td>
<td valign="middle" align="center">Endophyte</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Nine taxa were identified, listed in descending order of occurrence (mean proportion of 100 randomly selected root tips per tree). Taxa were verified using DNA sequencing of the internal transcribed spacer (ITS) region of the fungal genome and compared to known sequences in GenBank.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_2">
<title>Vegetation community composition</title>
<p>In total, we observed 49 plant taxa in plots, which included planted, seeded, and naturally recruiting species (<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;2</bold>
</xref>). Of these, 11 were grasses, 16 were forbs, and 22 were trees or shrubs. Plant species richness was greater in plots with sparse cover (28.5 &#xb1; 1.37) than in plots with medium cover (24.3 &#xb1; 0.89), while richness in plots with dense cover (25.2 &#xb1; 0.99) did not differ significantly from that of either sparse- or medium-cover plots (<italic>&#x3b2;</italic> = 25.9, <italic>SE</italic> = 0.61, <italic>p</italic> = 0.04; <xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2C</bold>
</xref>). The number of non-native plant species did not differ among the lupine cover classes.</p>
<p>An NMDS ordination illustrates a greater degree of compositional similarity between dense- and medium-cover plots than between medium- and sparse-cover plots (stress = 0.12, k = 2; <xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). The separation of dense- and sparse-cover plots along NMDS1 is consistent with their compositional difference, as determined by PERMANOVA (<italic>F</italic>
<sub>(2,21)</sub> = 2.02, <italic>p</italic> = 0.01). <italic>Vulpia</italic> (VUPR) appeared associated with the sparse-cover plots, whereas <italic>Aira</italic> species (AICA and AIPR), hairy cat&#x2019;s ear (HYRA), Oregon sunshine (ERLA), and blue wild rye (ELGL) were associated with the dense-cover plots (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3</bold>
</xref>). Results of a multipattern analysis indicated that no species were indicators of the sparse lupine-cover plots, but wood groundsel (SESY) and black cottonwood (POBA) were indicators of the medium- and dense-cover plots (all <italic>p</italic> &lt; 0.05).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Non-metric multidimensional scaling (NMDS) ordination of plots representing the three lupine cover classes. Plant species centroids are represented by four-letter codes (see <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;2</bold>
</xref> for the full names of species), and plots are represented by circles with crosses. Ellipses represent the 95% confidence intervals of plots within each lupine cover class.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fevo-11-1214117-g003.tif"/>
</fig>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<p>We documented lupine&#x2019;s ability to thrive in highly disturbed landscapes without reducing the growth of planted conifers. A direct benefit included an increase in foliar N concentrations among seedlings growing in the medium and dense lupine cover classes. An unexpected finding was the reduction of ECM on conifer roots in medium and dense lupine plots. In addition, areas of dense lupine cover had fewer, and a different composition of, species than did areas of sparse lupine cover.</p>
<p>There was no difference in tree height or diameter among the three lupine cover classes. This differed from <xref ref-type="bibr" rid="B53">Mauer et&#xa0;al. (2013)</xref>, who demonstrated Norway spruce (<italic>Picea abies</italic>), European beech (<italic>Fagus sylvatica</italic>), and Scots pine (<italic>Pinus sylvestris</italic>) to have an increased height and collar diameter when sowed among three species of lupine (<italic>Lupinus angustifolius</italic>, <italic>Lupinus albus</italic>, and <italic>Lupinus polyphyllus</italic>) after a 5-year growing period. In our study, greater foliar N was correlated with greater cover of riverbank lupine&#x2014;at concentrations well above those deemed adequate for conifers in the PNW (N &gt; 1.25%; <xref ref-type="bibr" rid="B70">Radwan and Brix, 1986</xref>; <xref ref-type="bibr" rid="B92">Walker and Gessel, 1990</xref>). Scots pines also showed an increase in foliar N levels during the first decade of growth when lupine was present (<xref ref-type="bibr" rid="B68">Prietzel et&#xa0;al., 2008</xref>). N-fixation by both <italic>Alnus incana</italic> and <italic>Lupinus nootkatensis</italic> was incorporated into the foliage of birch trees after 20 years on degraded forest soils (<xref ref-type="bibr" rid="B57">Myrold and Huss-Danell, 2003</xref>).</p>
<p>We also demonstrated a significant reduction of ECM colonization on conifer roots in the medium- and dense-cover plots. One possible explanation for the decrease in ECM colonization is that conifers may reduce carbon allocation to their ECM symbiont when N is not limiting (<xref ref-type="bibr" rid="B13">Corr&#xea;a et&#xa0;al., 2008</xref>). Our results support other research illustrating that carbon transfer from the host plant to the fungal symbiont depends on the N status of the tree (<xref ref-type="bibr" rid="B58">Nilsson et&#xa0;al., 2005</xref>). Field studies have documented that nitrogen fertilization can directly reduce ECM growth and colonization rates on longleaf pine (<italic>Pinus palustris</italic>; <xref ref-type="bibr" rid="B83">Sims et&#xa0;al., 2007</xref>). <xref ref-type="bibr" rid="B62">Ostonen et&#xa0;al. (2011)</xref> demonstrated that as N deposition loads increased, ECM biomass decreased in stands of Norwegian spruce (<italic>P. abies</italic>). This phenomenon was also observed by <xref ref-type="bibr" rid="B59">Nilsson and Wallander (2003)</xref> where Norwegian spruce under N additions resulted in a 50% ECM reduction when compared to trees within non-fertilized plots. This finding supports hypotheses that speculate mycorrhizal relationships range from mutualistic to parasitic, depending on soil nutrient status (<xref ref-type="bibr" rid="B44">Johnson, 1993</xref>; <xref ref-type="bibr" rid="B45">Johnson et&#xa0;al., 1997</xref>). Therefore, we propose a new hypothesis that investing carbon in non-photosynthetic symbionts is more costly than acquiring N from neighboring N-fixers.</p>
<p>We found less ECM species richness on novel terraces. Of the taxa identified, <italic>T. terrestris</italic> and <italic>W. mikolae</italic> were the most abundant. Both of these species are noted as among the most ubiquitous greenhouse and field ectomycorrhizas symbiotic with grand fir, Douglas fir, and western white pine (<xref ref-type="bibr" rid="B52">Massicotte et&#xa0;al., 1999</xref>; <xref ref-type="bibr" rid="B41">Hilszcza&#x144;ska and Sierota, 2013</xref>). Rare species included <italic>S. luteus</italic>, <italic>T. pacificum</italic>, and a <italic>Rhizopogon</italic> sp., all considered prevalent in PNW forests (<xref ref-type="bibr" rid="B15">Dahlberg, 2001</xref>). In addition, the average root colonization was rather low (averaged 30% ECM root tips). Soil organic matter is important for mycorrhizal symbioses, and studies have shown that mycorrhizal infection increases with organic matter amendments (<xref ref-type="bibr" rid="B3">Baar and DeVries, 1995</xref>; <xref ref-type="bibr" rid="B49">Lunt and Hedger, 2003</xref>). This low rate of colonization and small species list likely reflect a soil environment insufficient to support functional mycorrhizas (<xref ref-type="bibr" rid="B14">Cortese and Bunn, 2017</xref>).</p>
<p>As nitrogen fixers, <italic>Lupinus</italic> species develop N pools via atmospheric N fixation, which become available to plants via the mineralization of organic N into ammonium (<xref ref-type="bibr" rid="B90">Vitousek et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B74">Robertson and Groffman, 2007</xref>). While this study illustrated lupine&#x2019;s ability to influence bioavailable N to neighboring conifers, we did not see differences in total soil N. In addition, we observed no differences when C:N and OM were compared among the lupine cover classes. The inability to detect differences in soil N may have been due to immediate bio-assimilation by conifers and neighboring vegetation coupled with N leaching in sediments with low water/nutrient holding capacity. We acknowledge that the measure of soil N was a single point-in-time measurement of total N, which could explain the lack of difference in soil N among lupine cover classes. Future work would benefit from the use of ion exchange resins, which integrate N availability over time (<xref ref-type="bibr" rid="B69">Qian and Schoenau, 2002</xref>). We noted that lupine litter-fall was abundant on the soil surface 4 years after seeding/planting; additional time may be needed to observe changes in the soil profile (<xref ref-type="bibr" rid="B90">Vitousek et&#xa0;al., 2002</xref>). In comparison, <xref ref-type="bibr" rid="B36">Halvorson et&#xa0;al. (1992)</xref> and <xref ref-type="bibr" rid="B37">Halvorson and Smith (1995)</xref> measured significant organic matter production and total increased N near the lupine&#x2019;s (<italic>L. lepidus</italic> and <italic>Lupinus latifolius</italic>) rhizosphere, 7 years after the Mount Saint Helens eruption.</p>
<p>With regard to the vegetation community, we found that species richness decreased in plots with abundant lupine. This was also documented following the Mount Saint Helens eruption; <xref ref-type="bibr" rid="B56">Morris and Wood (1989)</xref> demonstrated that Pacific lupine (<italic>L. lepidus</italic>) inhibited immediate colonization of forbs in the early years, while later studies demonstrated a subsequent increase in plant community species richness that was accelerated by the presence of lupine (<xref ref-type="bibr" rid="B19">del Moral, 2007</xref>). We also found compositional differences in plots with dense vs. sparse lupine cover, suggesting that lupine may influence the trajectory of community development during primary succession (<xref ref-type="bibr" rid="B20">del Moral and Rozzell, 2005</xref>). The increase observed in plant species in the sparse lupine plots included a few rare native and non-native plants; however, the non-native species count was not different among the cover classes, and neither species was in high abundance or a significant indicator of sparse cover class. <xref ref-type="bibr" rid="B12">Chenoweth et&#xa0;al. (2022)</xref> found that seeding herbaceous species (including lupine) on these coarse terraces deterred non-native species establishment. This is of particular importance in coarse, nutrient-poor substrates with the lack of canopy closure that creates an opportunity for the invasion of exotic ruderal (<xref ref-type="bibr" rid="B80">Shafroth et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B87">Tabacchi et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B30">Funk and Vitousek, 2007</xref>; <xref ref-type="bibr" rid="B55">Michel et&#xa0;al., 2011</xref>). Important to the overarching goal of accelerating forest succession, lupine&#x2019;s potential role as a beneficial cover crop may aid in the establishment of planted conifers while deterring non-native plant communities (<xref ref-type="bibr" rid="B27">Fierke and Kauffman, 2006</xref>; <xref ref-type="bibr" rid="B63">Peltzer et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B88">Urgenson et&#xa0;al., 2009</xref>).</p>
</sec>
<sec id="s5" sec-type="conclusions">
<title>Conclusion</title>
<p>The damming and the subsequent dewatering of Lake Mills created a phenomenal disturbance, leaving novel terraces void of ecological legacies. Similar to the post-eruption landforms colonized by lupine at Mount Saint Helens, seeded lupine in the Elwha River Valley was able to establish on the barren substrates. Important to restoration projects, lupine&#x2019;s cover did not impede conifer growth in the early years of planting. We acknowledge that we used natural variation in lupine density as a predictor of conifer performance and soil development; therefore, lupine density itself could be a response to variation in soils, vegetation, or other environmental features. Spatial variation in lupine abundance could be caused by or otherwise confounded with other environmental conditions that were not measured. Regardless, when comparing conifer growth within dense lupine cover, lupine canopies were not found to be detrimental.</p>
<p>Further, lupine&#x2019;s contribution to bio-available N promoted adequate foliar nitrogen concentrations that may contribute to greater growth in the subsequent years. It is not clear whether this increase in available N was the mechanism behind the inverse relationship with lupine and ECM root colonization; however, current research is further investigating this. This may be an explanation of tradeoffs: ECM fungi aid in nutrient uptake/growth in low lupine density cover, but N-fixation by lupine serves this function at higher densities.</p>
<p>This study also illustrates the challenges for revegetation in coarse sediments and the important function of a cover crop on sediment surfaces. Lupine OM contributions are an important attribute for the successional trajectory, given its biennial life cycle and ability to tolerate resource-limited soils. Although lupine did not contribute to an increase in soil carbon or OM, we hypothesize that lupine will contribute important carbon pools to the forest soil-building process after a decade of recovery, which may also lead to an increase in ECM fungal colonization and native plant recruitment. Importantly, this study also documented the benefits of including a locally native N-fixing species (riverbank lupine) in the Elwha River Restoration project, which can inform future practitioners when considering strategies of revegetation after dam removal. Based on our findings and corroborative literature, we recommend the inclusion of native lupine in highly disturbed, N-limiting soils to contribute to the N pools for native tree establishment. These attributes may accelerate forest succession leading to closed canopies much faster than passive recovery on coarse soils.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material</bold>
</xref>.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>JK: literature review, study design, data collection and analysis, and synthesis. MDL: DNA extraction and PCR. AL: DNA extraction and PCR, and literature review. JB: literature review, study design, data collection and analysis, synthesis, and project oversite. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>Research funding was provided by the Brooks Family Research Fund, Western Washington University&#x2019;s Research and Sponsored Programs, the Stuntz Mycology Fund, and the Ross Travel Grant.</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>Dr. Jim Helfield, Amy Lawrence, and Dr. Robin Matthews provided feedback on the study design, statistical analysis, and draft revisions. Joshua Chenoweth, who led the forest restoration project in the Elwha River basin, provided intimate knowledge of the system, restoration methods, and efficient field sampling methods.</p>
</ack>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fevo.2023.1214117/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fevo.2023.1214117/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet_1.pdf" id="SM1" mimetype="application/pdf"/>
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