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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Ecol. Evol.</journal-id>
<journal-title>Frontiers in Ecology and Evolution</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Ecol. Evol.</abbrev-journal-title>
<issn pub-type="epub">2296-701X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fevo.2023.1123292</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Ecology and Evolution</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Spatially prioritizing mitigation for amphibian roadkills based on fatality estimation and landscape conversion</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes"><name>
<surname>Gon&#x00E7;alves</surname>
<given-names>Larissa Oliveira</given-names>
</name><xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="aff3" ref-type="aff"><sup>3</sup></xref>
<xref rid="c001" ref-type="corresp"><sup>&#x002A;</sup></xref>
<xref rid="fn0001" ref-type="author-notes"><sup>&#x2020;</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2138540/overview"/>
</contrib>
<contrib contrib-type="author"><name>
<surname>Brack</surname>
<given-names>Ismael Verrastro</given-names>
</name><xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="aff4" ref-type="aff"><sup>4</sup></xref>
<xref rid="fn0001" ref-type="author-notes"><sup>&#x2020;</sup></xref>
</contrib>
<contrib contrib-type="author"><name>
<surname>Zank</surname>
<given-names>Caroline</given-names>
</name><xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="aff4" ref-type="aff"><sup>4</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2218747/overview"/>
</contrib>
<contrib contrib-type="author"><name>
<surname>Beduschi</surname>
<given-names>J&#x00FA;lia</given-names>
</name><xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="aff5" ref-type="aff"><sup>5</sup></xref>
</contrib>
<contrib contrib-type="author"><name>
<surname>Kindel</surname>
<given-names>Andreas</given-names>
</name><xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
<xref rid="aff4" ref-type="aff"><sup>4</sup></xref>
<uri xlink:href="https://loop.frontiersin.org/people/2218739/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Laborat&#x00F3;rio de Ecologia, Manejo e Conserva&#x00E7;&#x00E3;o de Fauna Silvestre, Departamento de Ci&#x00EA;ncias Florestais, Escola Superior de Agricultura &#x201C;Luiz de Queiroz&#x201D;, Universidade de S&#x00E3;o Paulo</institution>, <addr-line>Piracicaba</addr-line>, <country>Brazil</country></aff>
<aff id="aff2"><sup>2</sup><institution>N&#x00FA;cleo de Ecologia de Rodovias e Ferrovias, Departamento de Ecologia, Universidade Federal do Rio Grande do Sul</institution>, <addr-line>Porto Alegre</addr-line>, <country>Brazil</country></aff>
<aff id="aff3"><sup>3</sup><institution>Programa USPSusten &#x2013; Superintend&#x00EA;ncia de Gest&#x00E3;o Ambiental, Universidade de S&#x00E3;o Paulo</institution>, <addr-line>S&#x00E3;o Paulo</addr-line>, <country>Brazil</country></aff>
<aff id="aff4"><sup>4</sup><institution>Programa de P&#x00F3;s-Gradua&#x00E7;&#x00E3;o em Ecologia, Universidade Federal do Rio Grande do Sul</institution>, <addr-line>Porto Alegre</addr-line>, <country>Brazil</country></aff>
<aff id="aff5"><sup>5</sup><institution>PRECISA Consultoria Ambiental LTDA</institution>, <addr-line>Porto Alegre</addr-line>, <country>Brazil</country></aff>
<author-notes>
<fn id="fn0002" fn-type="edited-by">
<p>Edited by: Silviu O. Petrovan, University of Cambridge, United Kingdom</p>
</fn>
<fn id="fn0003" fn-type="edited-by">
<p>Reviewed by: Fernando Ascens&#x00E3;o, University of Lisbon, Portugal; Clara Grilo, University of Lisbon, Portugal</p>
</fn>
<corresp id="c001">&#x002A;Correspondence: Larissa Oliveira Gon&#x00E7;alves, <email>larissa.oligon@gmail.com</email></corresp>
<fn id="fn0001" fn-type="equal">
<p><sup>&#x2020;</sup>These authors have contributed equally to this work and share first authorship</p>
</fn>
<fn id="fn0004" fn-type="other">
<p>This article was submitted to Conservation and Restoration Ecology, a section of the journal Frontiers in Ecology and Evolution</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>07</day>
<month>03</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>11</volume>
<elocation-id>1123292</elocation-id>
<history>
<date date-type="received">
<day>13</day>
<month>12</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>14</day>
<month>02</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2023 Gon&#x00E7;alves, Brack, Zank, Beduschi and Kindel.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Gon&#x00E7;alves, Brack, Zank, Beduschi and Kindel</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Roads cause biodiversity loss and the effects of wildlife-vehicle collisions may ripple from individuals and populations to ecosystem functioning. Amphibians are threatened worldwide and, despite being particularly prone to roadkill impacts, they are often neglected in assessments. Here, we develop a sampling and analytical framework for spatially prioritizing mitigation actions for anuran amphibian roadkills based on fatality estimation and landscape conversion. The framework is composed of the six following steps: (1) pre-selection of segments to survey using the wetland coverage in the surroundings and the presence of roadkills of aquatic reptiles as a proxy for wet areas; (2) spatiotemporally replicated counts with a dependent double-observer protocol, that is, each segment is sampled multiple times by two pairs of people on foot; (3) extraction of covariates hypothesized to affect spatial and temporal variation in roadkill rates and persistence; (4) hierarchical open-population N-mixture modelling to estimate population dynamics parameters, which accounts for imperfect detection and spatiotemporal heterogeneity in removal, detection, and roadkill rates, and explicitly estimates carcass entries per time interval. (5) Assessment of land cover transition to infer landscape stability; and (6) prioritization of segments based on higher fatality rates and lower landscape conversion rates. We estimated a mean of 136 (95%CrI&#x2009;=&#x2009;130&#x2013;142) anurans roadkill per km per day in the 50 sample sites selected. The initial number of carcasses had a positive relationship with the percentage occupied by wetlands and a negative association with the percentage occupied by urban areas. The number of entrant carcass per interval was higher in the presence of rainfall and had a positive association with the wetlands cover. Carcass persistence probability was higher at night and lower in sites with high traffic volume. Ten segments (~1% of road extension) were prioritized using the median as threshold for fatality estimates and landscape conversion. It is urgent to appropriately evaluate the number of amphibians roadkilled aiming to plan and implement mitigation measures specifically designed for these small animals. Our approach accounts for feasibility (focused on sites with greater relevance), robustness (considering imperfect detection), and steadiness (less prone to loss of effectiveness due to landscape dynamics).</p>
</abstract>
<kwd-group>
<kwd>mitigation prioritization</kwd>
<kwd>anurans</kwd>
<kwd>imperfect detection</kwd>
<kwd>persistence probability</kwd>
<kwd>landscape transition</kwd>
<kwd>hierarchical models</kwd>
</kwd-group>
<contract-num rid="cn1">FEENG/307</contract-num>
<contract-num rid="cn1">FEENG/437</contract-num>
<contract-sponsor id="cn1">Funda&#x00E7;&#x00E3;o Empresa Escola de Engenharia da Universidade Federal do Rio Grande do Sul</contract-sponsor>
<counts>
<fig-count count="4"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="62"/>
<page-count count="10"/>
<word-count count="7926"/>
</counts>
</article-meta>
</front>
<body>
<sec id="sec1" sec-type="intro">
<title>Introduction</title>
<p>Road infrastructures are an important source of biodiversity loss and are spreading across the globe (<xref ref-type="bibr" rid="ref32">Meijer et al., 2018</xref>; <xref ref-type="bibr" rid="ref58">Wenz et al., 2020</xref>). Besides the increase in environmental degradation and the decrease in ecological connectivity, direct removal of individuals by roadkill can be a major cause of local population decline (<xref ref-type="bibr" rid="ref14">Fahrig and Rytwinski, 2009</xref>).Road effects on wild populations can ripple to other levels of ecological organization, affecting ecosystem functioning (<xref ref-type="bibr" rid="ref55">van der Ree et al., 2015</xref>). To mitigate efficiently the negative impacts of roads on wildlife, sound knowledge on where deaths are concentrated is fundamental (<xref ref-type="bibr" rid="ref20">Gunson and Teixeira, 2015</xref> but see <xref ref-type="bibr" rid="ref54">Teixeira et al., 2017</xref>), as well as accounting for landscape stability to ensure that proposed measures are long-term lasting (<xref ref-type="bibr" rid="ref61">Zeller et al., 2020</xref>). Generating such high-quality information can be challenging given the usually large extent of road networks, scarce time and financial resources available for field work.</p>
<p>It is possible to assess roadkill patterns based on road features, landscape characteristics, and species occurrence (<xref ref-type="bibr" rid="ref34">Patrick et al., 2012</xref>; <xref ref-type="bibr" rid="ref15">Girardet et al., 2015</xref>; <xref ref-type="bibr" rid="ref57">Visintin et al., 2016</xref>). Nevertheless, probably the best information to assess where roadkills concentrate along a road is still by estimating fatalities based on observation/counts of carcasses. However, fatality estimations using raw counts can be biased, as observers might not detect all available carcasses. Moreover, removal of carcass from the road by scavengers or traffic may also be an important factor affecting estimates, especially when smaller animals are the study target (<xref ref-type="bibr" rid="ref45">Santos et al., 2011</xref>; <xref ref-type="bibr" rid="ref56">Villegas-Patraca et al., 2012</xref>; <xref ref-type="bibr" rid="ref1">Barrientos et al., 2018</xref>; <xref ref-type="bibr" rid="ref48">Schwartz et al., 2018</xref>). Not properly addressing these sources of error (detection and removals) in fatality assessments might produce biased roadkill estimations. As both errors may vary in space and time, their spatiotemporal heterogeneity should also be accounted for. If such aspects are not assessed, mitigation actions may be proposed at less effective sites.</p>
<p>Usual approaches to estimate wildlife fatalities at man-made infrastructures, when considering the sources of error, commonly use <italic>ad-hoc</italic> formulas based on detection rates and carcass removal trials from experiments or from comparisons with an assumed perfect-detection method (e.g., surveys on foot; <xref ref-type="bibr" rid="ref1001">Simonis et al., 2018</xref>; <xref ref-type="bibr" rid="ref53">Teixeira et al., 2013</xref>). However, there have been claims for the application of process-based approaches while accounting for imperfect detection in carcass observations (e.g., wind farms, <xref ref-type="bibr" rid="ref37">P&#x00E9;ron et al., 2013</xref>; roads, <xref ref-type="bibr" rid="ref18">Guinard et al., 2012</xref>). Such process-based approaches, typically based on open population capture-recapture models, tend to represent more accurately the dynamics of carcasses entering and leaving the sampled road segment (<xref ref-type="bibr" rid="ref19">Guinard et al., 2015</xref>; <xref ref-type="bibr" rid="ref36">P&#x00E9;ron, 2018</xref>).</p>
<p>Even when roadkill hotspots are robustly estimated, mitigation measures can result in resource wasting if populations are locally affected due to other anthropic pressures. The effectiveness of an installed mitigation structure could rapidly decline in regions where anthropogenic landscape changes are more pronounced, causing shifts in the distribution and movement patterns of a species along a road. Hence, habitat stability is an important aspect to be included in the spatial prioritization of mitigation structures, especially when planning long-term measures (<xref ref-type="bibr" rid="ref5">Clevenger and Ford, 2010</xref>; <xref ref-type="bibr" rid="ref61">Zeller et al., 2020</xref>).</p>
<p>While often neglected in road fatality assessments, amphibians are one of the most affected taxa by roadkills, representing more than 90% of the fatalities in some cases (<xref ref-type="bibr" rid="ref13">Fahrig et al., 1995</xref>; <xref ref-type="bibr" rid="ref16">Glista et al., 2008</xref>; <xref ref-type="bibr" rid="ref6">Coelho et al., 2012</xref>; <xref ref-type="bibr" rid="ref49">Silva et al., 2021</xref>). Amphibians are the most threatened vertebrate group with 41% of the species at risk of extinction (<xref ref-type="bibr" rid="ref25">IUCN, 2021</xref>). Their life cycle, with most species presenting an aquatic larval phase, imposes to adults and juveniles challenges in arriving and leaving water bodies every reproductive season. This can increase road encounter probability by amphibians and the potential negative population-level effects, especially for anurans species with lower reproductive rates, smaller body sizes, and younger ages at sexual maturity (<xref ref-type="bibr" rid="ref43">Rytwinski and Fahrig, 2012</xref>). Moreover, their small size results in low detection and fast removal (<xref ref-type="bibr" rid="ref53">Teixeira et al., 2013</xref>; <xref ref-type="bibr" rid="ref35">Pereira et al., 2018</xref>) demanding sampling on foot and with short time intervals between occasions, which would represent a challenge for the survey of extensive road networks.</p>
<p>Here, we develop a framework for prioritizing road segments for amphibian roadkill mitigation based on fatality estimation and landscape transition (<xref rid="fig1" ref-type="fig">Figure 1</xref>). Our framework is composed of the six following steps:<list list-type="order">
<list-item>
<p>Pre-selection of road segments with higher potential occurrence of amphibians;</p>
</list-item>
<list-item>
<p>Spatiotemporally replicated carcass count surveys by dependent double observers on foot;</p>
</list-item>
<list-item>
<p>Extraction of covariates that may influence the spatial and temporal variation in roadkill rates and persistence;</p>
</list-item>
<list-item>
<p>Fatality estimation with hierarchical modelling, taking into account imperfect detection and spatiotemporal heterogeneity in persistence and roadkill rates;</p>
</list-item>
<list-item>
<p>Landscape conversion using a transition rate from native to non-native land covers;</p>
</list-item>
<list-item>
<p>Road segment prioritization using higher roadkill rates and lower landscape transition rates as criteria.</p>
</list-item>
</list></p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption>
<p>Framework to spatially prioritize road segments for amphibian roadkill mitigation based on fatality estimation and landscape stability. <bold>(1)</bold> R road sites of 100&#x2009;m length, where amphibian occurrence is expected to be higher, are pre-selected for sampling; <bold>(2)</bold> Each site i is surveyed T times searching for carcasses using a dependent double-observer protocol; <bold>(3)</bold> Covariates hypothesized to influence spatial and temporal variation in roadkill rates and persistence are compiled (black and gray letters indicate spatial and temporal covariates respectively); <bold>(4)</bold> Carcass counts C and covariates are fitted under a hierarchical open N-mixture model to explicitly estimate roadkill rates. Dynamics in the population of carcasses N is modelled as a result of two processes, entries and persistence. A roadkill rate is derived from the entry parameter &#x03B3;; <bold>(5)</bold> Landscape stability is assessed by measuring the transition rates from native to non-native covers; and <bold>(6)</bold> Priority segments for mitigation are defined based on high fatality rates and low landscape transition rates.</p>
</caption>
<graphic xlink:href="fevo-11-1123292-g001.tif"/>
</fig>
<p>We applied this framework to define priority segments for mitigation of amphibian fatalities on two roads surrounded by a mosaic of grasslands, pastures, wetlands, rice fields, and urban areas in southernmost Brazil. In the fatality estimation step, we used dynamic N-mixture models to evaluate the influence of land use and cover on the distribution of carcasses, the impact of raining on roadkill, traffic volume and day/night time on carcass persistence. We expected that wetlands and urban areas in the surroundings of a segment would have a positive and negative influence, respectively, on the spatial distribution of carcasses; that fatality rates would be higher in rainy occasions; that at segments with higher traffic volume, carcass would persist less; and that carcass persistence would be higher at night.</p>
</sec>
<sec id="sec2" sec-type="materials|methods">
<title>Materials and methods</title>
<sec id="sec3">
<title>Study area</title>
<p>Located in southernmost Brazil, the roads ERS-040 and ERS-784 have 84 and 15&#x2009;km of length, respectively (<xref rid="fig2" ref-type="fig">Figure 2</xref>). The ERS-040 is surrounded by a heterogeneous landscape, with a mosaic of wetlands, urban areas, rice field and cattle ranching, while the ERS-784 is bordered by extensive exotic <italic>Pinus</italic> sp. plantations, scattered human occupation and wetlands. As the roads are designed to access the coast, there is a strong increase in the daily traffic volume during the spring and more markedly in the summer months, that coincide with high amphibian activity.</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption>
<p>Road segments (100&#x2009;m length) sampled for amphibian fatality estimation in southernmost Brazil (ERS-040 and ERS-784 roads) aiming at identifying priority locals for mitigation. In the upper image, colored circles represent estimated fatalities for the sampled segments, from which some of them (framed by squares) are shown in detail from <bold>(A&#x2013;D)</bold>. Map data &#x00A9; OpenStreetMap contributors, 2022.</p>
</caption>
<graphic xlink:href="fevo-11-1123292-g002.tif"/>
</fig>
</sec>
<sec id="sec4">
<title>Segments pre-selection for sampling</title>
<p>We identified road segments where we expected a higher concentration of amphibians (<xref rid="fig1" ref-type="fig">Figure 1.1</xref>). In the context of this study, the vast majority of amphibian species in the region are dependent on lentic environments (such as temporary and permanent pools, swamps, the edge of lagoons) and/or need these areas to complete their reproductive cycle. Hereafter, we will refer to these areas as wetlands. We selected 50 road segments with 100&#x2009;m length using two sources of information: (i) percentage occupied by wetlands coverage in the surroundings obtained from remote sensing and field checking; and (ii) number of observed fatalities of aquatic reptiles (unpublished data obtained from a systematic survey of reptiles by car from the road concessionaire). Each segment was adopted as our sampling unit (site) and their extent was selected considering displacement capacities/willingness of amphibians along a fence (<xref ref-type="bibr" rid="ref11">Duellman and Trueb, 1994</xref>; <xref ref-type="bibr" rid="ref3">Brehme et al., 2021</xref>).</p>
<p>We calculated the percentage occupied by wetlands in a 1&#x2009;km buffer centered on each segment, using two different classification sources followed by the inspection of high-resolution images using Google Earth Pro: the index of flooded surface in wetlands (Water In Wetlands-WIW- <xref ref-type="bibr" rid="ref29">Lefebvre et al., 2019</xref>) and the Vegetation Coverage Map of Rio Grande do Sul - base year 2015, with 1:250,000 scale (<xref ref-type="bibr" rid="ref23">Hoffmann et al., 2015</xref>). The WIW index was obtained through Google Earth Engine platform using Sentinel-2 satellite images available for spring and summer period (from September 2019 to January 2020), and the median of the pixel values between the dates obtained for the near-infrared (B8A) and short-wave infrared (B12) bands. To facilitate the identification of the wetlands, we modified the cut-off threshold of the B8A band to the value of 2000&#x2009;nm and excluded the areas of rivers and deep lagoons. The WIW result is a raster in which each pixel with water on the surface received value 1 and the others value zero. We overlapped the WIW map with the classes water bodies, wetland, and wet grasslands from the Vegetation Coverage Map of Rio Grande do Sul. With this final map, we selected road segments with more than 30% of wetland within the 1&#x2009;km buffer centered on each segment. We also selected segments based on the presence of at least two fatalities of aquatic reptiles (<xref ref-type="bibr" rid="ref12">EGR, 2020</xref>). We use the occurrence of aquatic reptiles as an indicator for wet areas that could not be detected by remote sensing. We specifically considered aquatic snakes that feed on amphibians (water snake, <italic>Helicops infrataeniatus</italic>; and green snake, <italic>Erythrolamprus poecilogyrus</italic>) and turtles.</p>
</sec>
<sec id="sec5">
<title>Carcass surveys</title>
<p>We conducted spatiotemporally replicated counts with a dependent double-observer protocol, that is, each of the 50 selected 100&#x2009;m segments was sampled multiple times by two pairs of people on foot (i.e., front-pair is the first observer and the back-pair is the second; <xref rid="fig1" ref-type="fig">Figure 1.2</xref>). Each member of the front pair and back pair sampled one road lane and its respective shoulder. Surveys occurred twice a day &#x2013; one survey at dawn and one at dusk &#x2013; during three consecutive days in January of 2021, resulting in six sampling occasions (i.e., visits) per site. The first observer of each lane walked ahead and recorded all possible carcasses and the second walked behind and only recorded the carcasses not detected by the first (i.e., dependent double observers; <xref rid="fig1" ref-type="fig">Figure 1.2</xref>). Detected carcasses were not removed until the last sampling occasion was finished. For each detected carcass, we took a picture, recorded date, occasion, observer (1<sup>st</sup> or 2<sup>nd</sup>) and segment ID. Each anuran carcass record was identified, whenever possible, on the field, or based on pictures or carcasses collected after the last sampling occasion. We did not estimate fatality numbers per species since our aim was to exemplify a general application of the framework for amphibian roadkill estimation.</p>
</sec>
<sec id="sec6">
<title>Covariates extraction</title>
<p>We included five covariates to estimate fatalities accounting for imperfection detection and its spatiotemporal heterogeneity (<xref rid="fig1" ref-type="fig">Figure 1.3</xref>): (i) wetland coverage, (ii) urban areas coverage, (iii) traffic volume, (iv) the presence/absence of rainfall, and (v) day/night time. We obtained the percentage occupied by wetland coverage and urban areas in 200&#x2009;m buffers centered on each road segment. Wetland coverage was obtained from the same classification used for the site pre-selection. Urban areas were manually classified based on a 2019 high resolution image using Google Earth Pro, considering polygons encompassing each edification and human settlement within the 200&#x2009;m buffer. We categorized the traffic volume into three levels (low, medium, and high) based on the proximity to the populous human settlements and the traffic distribution along a road corridor from populous cities to the coast. Higher traffic was considered for all segments located in the most populous city (Viam&#x00E3;o) which is the connection to the main city in the region (Porto Alegre); medium traffic segments were in an agricultural area that connects the studied road to a federal road; and lower traffic segments were in the end of the road that have access to two coastal cities (Cidreira and Balne&#x00E1;rio Pinhal). The presence/absence of rain in the previous interval for each occasion was based on recordings of rainfall between 6&#x2009;am and 5&#x2009;pm for dusk sampling occasions and between 6&#x2009;pm and 5&#x2009;am for dawn occasions. Rainfall data were obtained from the closest weather station for each site: Tramanda&#x00ED; (code A834 from the Brazilian National Institute of Meteorology) and Viam&#x00E3;o (code 432300202A from the National Center for Monitoring and Natural Disaster Alerts; <xref ref-type="bibr" rid="ref4">CEMADEN, 2022</xref>; <xref ref-type="bibr" rid="ref24">INMET, 2022</xref>). Each interval between occasions was defined as nighttime if sampling visit occurred during dawn and as daytime if occurred at dusk.</p>
</sec>
<sec id="sec7">
<title>Dynamic N-mixture model for fatality estimation</title>
<p>We applied a dynamic N-mixture model to the double-observer carcass counts in each visit <inline-formula>
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<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mo>&#x2208;</mml:mo>
<mml:mrow>
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<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mi mathvariant="normal">,</mml:mi>
<mml:mo>&#x2026;</mml:mo>
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</mml:mrow>
<mml:mo>}</mml:mo>
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</mml:mrow>
</mml:math>
</inline-formula> for each site <inline-formula>
<mml:math id="M2">
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>&#x2208;</mml:mo>
<mml:mrow>
<mml:mo>{</mml:mo>
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<mml:mn>1</mml:mn>
<mml:mi mathvariant="normal">,</mml:mi>
<mml:mo>&#x2026;</mml:mo>
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<mml:mo>}</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula> (<xref rid="fig1" ref-type="fig">Figure 1.4</xref>), derived from the Dail-Madsen formulation with a robust design used for living populations (<xref ref-type="bibr" rid="ref8">Dail and Madsen, 2011</xref>; <xref ref-type="bibr" rid="ref62">Zhao and Royle, 2019</xref>). This model assumes that the local carcass population size varies throughout the visits as a result of two dynamic parameters: (i) carcass entries per interval; and (ii) carcass persistence probability between two visits so that <inline-formula>
<mml:math id="M3">
<mml:mrow>
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<mml:mi>t</mml:mi>
<mml:mo>+</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo>=</mml:mo>
<mml:msub>
<mml:mi>S</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>E</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula>, in which <inline-formula>
<mml:math id="M4">
<mml:mrow>
<mml:msub>
<mml:mi>S</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the number of remaining carcasses from the previous visit and <inline-formula>
<mml:math id="M5">
<mml:mrow>
<mml:msub>
<mml:mi>E</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the number of entering carcasses in the previous interval. The population size of the first visit <inline-formula>
<mml:math id="M6">
<mml:mrow>
<mml:msub>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is estimated using a Poisson distribution with mean (and variance) &#x03BB;. The number of remaining carcasses <inline-formula>
<mml:math id="M7">
<mml:mrow>
<mml:msub>
<mml:mi>S</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is assumed to be a result of a binomial distribution in which each carcass from the population <inline-formula>
<mml:math id="M8">
<mml:mrow>
<mml:msub>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> has a probability &#x03C6; to persist until the next visit. The number of entering carcasses <inline-formula>
<mml:math id="M9">
<mml:mrow>
<mml:msub>
<mml:mi>E</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is assumed to follow a Poisson distribution with mean and variance &#x03B3;. In the observation process, as surveys were conducted with a dependent double-observer protocol, the counts <inline-formula>
<mml:math id="M10">
<mml:mrow>
<mml:msub>
<mml:mi>C</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>j</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> of each pair of observers <inline-formula>
<mml:math id="M11">
<mml:mrow>
<mml:mi>j</mml:mi>
<mml:mo>&#x2208;</mml:mo>
<mml:mrow>
<mml:mo>{</mml:mo>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mi mathvariant="normal">,</mml:mi>
<mml:mn>2</mml:mn>
</mml:mrow>
<mml:mo>}</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula> are assumed to follow a multinomial distribution. Then, each carcass available on the population <inline-formula>
<mml:math id="M12">
<mml:mrow>
<mml:msub>
<mml:mi>N</mml:mi>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> has a probability <italic>p</italic> of being detected by the first pair of observers and a probability <inline-formula>
<mml:math id="M13">
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mn>1</mml:mn>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>p</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula> of being detected by the second pair. Spatial and temporal variation (i.e., heterogeneity) in the four basic parameters (&#x03BB;, &#x03C6;, &#x03B3;, and <italic>p</italic>) can be modelled as linear functions of covariates using the corresponding link functions (logit for probabilities and log for Poisson).</p>
<p>This approach permits to explicitly derive roadkill rate estimates (i.e., number of entering carcasses per interval), while taking into account imperfect detection and spatiotemporal heterogeneity in all parameters. Furthermore, it has the advantage of not requiring marking individual carcasses, neither trial experiments to separately estimate persistence and detection.</p>
<p>We considered effects of wetland coverage and urban areas on the initial carcass abundance (number of carcasses in the first occasion); wetland coverage and rain on entrant carcasses; and traffic volume and day/night time on carcass persistence. Carcass detection probability by each pair of observers was considered as constant. We estimated, as a derived parameter, an average roadkill rate per segment (<inline-formula>
<mml:math id="M14">
<mml:mrow>
<mml:mi>F</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>t</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>l</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>t</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>s</mml:mi>
<mml:mo>/</mml:mo>
<mml:mi>d</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>y</mml:mi>
</mml:mrow>
</mml:math>
</inline-formula>) by calculating the mean number of entrant carcasses between the first and the last occasion and an overall roadkill rate for all segments <inline-formula>
<mml:math id="M15">
<mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>F</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>t</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>l</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>t</mml:mi>
<mml:mi>i</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>s</mml:mi>
<mml:mo>/</mml:mo>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>m</mml:mi>
<mml:mo>.</mml:mo>
<mml:mi>d</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>y</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo>)</mml:mo>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula> We fitted the carcass count data to the dynamic N-mixture model under a Bayesian approach using software JAGS (<xref ref-type="bibr" rid="ref39">Plummer, 2003</xref>) accessed from the package <italic>jagsUI</italic> (<xref ref-type="bibr" rid="ref27">Kellner, 2015</xref>) in R (<xref ref-type="bibr" rid="ref41">R Core Team, 2022</xref>). We ran three parallel Monte Carlo Markov Chains with 10,000 steps in the adaptive phase, followed by 100,000 steps from which the first 20,000 were discarded. This resulted in 240,000 samples of the posterior distribution from which we calculated the mean and 95% credible intervals for each parameter. We assigned vague prior distributions for all estimated parameters. Model convergence was assessed by visually inspecting the chains&#x2019; traceplots and using the R-hat statistics (R-hat&#x2009;&#x2264;&#x2009;1.1). R and JAGS code are provided in <xref ref-type="supplementary-material" rid="SM1">Supplementary material 1</xref>.</p>
</sec>
<sec id="sec8">
<title>Landscape conversion</title>
<p>To determine landscape stability for each segment, we used a landscape transition metric based on land cover transitions from native to non-native (<xref rid="fig1" ref-type="fig">Figure 1.5</xref>). The segments with lower transition rates represent sites that had a lower conversion of their surrounding landscape, and we assumed they are more prone to be stable over the long term, and thus are more suitable to receive mitigation actions that are fixed in space, such as fences associated to underpasses. We defined a 200&#x2009;m buffer centered on each segment to extract the land-cover map to calculate the landscape transition rate. We extracted the maps for the years of 2009 and 2019 from the Mapbiomas V5.0 (<xref ref-type="bibr" rid="ref51">Souza et al., 2020</xref>) and reclassified, grouping them into two classes: native and non-native land covers, using the software QGIS V3.12 (<xref ref-type="bibr" rid="ref40">QGIS.org, 2022</xref>). With the <italic>Dinamica EGO</italic> software (<xref ref-type="bibr" rid="ref50">Soares-Filho et al., 2009</xref>), we obtained the transition rate for each segment buffer by calculating the proportion of native land cover in 2009 that became non-native in 2019. We have considered here that this stability in landscape conversion would indicate areas in which mitigation measures would last longer because the region where the roads are embedded has a consolidated historical land use. However, we note that in different contexts, other criteria may be used.</p>
</sec>
<sec id="sec9">
<title>Segment prioritization</title>
<p>We used a four-quadrant prioritization matrix to select segments for mitigation, considering: (i) the highest estimated fatality rates and (ii) the lowest transition rates from native to non-native land cover on the surrounding landscape (<xref rid="fig1" ref-type="fig">Figure 1.6</xref>). Quadrants were delimited by the median of the estimated fatality rates and the land-cover transition rate. Hence, road segments located in the quadrant formed by values above the median of estimated fatality rates and below the median of land-cover transition rate are the high-priority segments for mitigation.</p>
</sec>
</sec>
<sec id="sec10" sec-type="results">
<title>Results</title>
<p>We found amphibian carcasses in 49 of the 50 sampled segments in at least one of the six occasions. Maximum count per visit in these segments varied from one to 127 carcasses detected by the two pairs of observers, while the mean count for all segments was 12 carcasses. Hylidae and Leptodactylidae families represented 75% of carcasses identified, whereas <italic>Dendropsophus</italic> spp. and <italic>Leptodactylus luctator</italic>, <italic>Leptodactylus gracilis</italic>, and <italic>Pseudis minuta</italic> were the most recorded species (<xref ref-type="supplementary-material" rid="SM1">Supplementary material 2</xref>).</p>
<p>The estimated average roadkill rate at the 50 segments during the 3&#x2009;days was 136 (95%CrI&#x2009;=&#x2009;130&#x2013;142) amphibian fatalities per km per day. Mean roadkill rate for the 100&#x2009;m segments ranged from 1.3 (95%CrI&#x2009;=&#x2009;0.4&#x2013;3.2) to 52.7 (95%CrI&#x2009;=&#x2009;48.4&#x2013;57.6) fatalities/day (<xref rid="fig2" ref-type="fig">Figure 2</xref>). We found a positive relationship of the initial carcass abundance with wetlands coverage (<xref rid="fig3" ref-type="fig">Figure 3A</xref>) and a negative relationship with urban areas coverage (<xref rid="fig3" ref-type="fig">Figure 3B</xref>). The number of entrant carcasses per interval was positively influenced by the wetland coverage and was twice higher when rain occurred (<xref rid="fig3" ref-type="fig">Figure 3C</xref>). Carcass persistence was higher during the night and very low for segments with high traffic volume (<xref rid="fig3" ref-type="fig">Figure 3D</xref>). The probability of each pair of observers to detect an amphibian carcass was 0.69 (95%CrI&#x2009;=&#x2009;0.66&#x2013;0.72; <xref rid="tab1" ref-type="table">Table 1</xref>).</p>
<fig position="float" id="fig3">
<label>Figure 3</label>
<caption>
<p>Predicted relations from the dynamic N-mixture model applied for dependent double-observer counts of amphibian carcasses. Relationship of the initial number of carcasses with <bold>(A)</bold> wetlands coverage, and <bold>(B)</bold> coverage of urban areas; <bold>(C)</bold> the number of entrant carcasses with wetlands coverage for rainy and not-rainy intervals; and <bold>(D)</bold> the carcass persistence probability with traffic volume and time of the day. Shaded areas and error bars represent the 95% credibility intervals.</p>
</caption>
<graphic xlink:href="fevo-11-1123292-g003.tif"/>
</fig>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption>
<p>Coefficient estimates obtained from the dynamic N-mixture model applied for dependent double-observer counts of amphibian carcasses.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th/>
<th align="center" valign="top">Estimate</th>
<th align="center" valign="top">Std. error</th>
<th align="center" valign="top">&#x2212;95%CL</th>
<th align="center" valign="top">+95%CL</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top" colspan="5">Initial abundance (&#x03BB;)</td>
</tr>
<tr>
<td align="left" valign="top">&#x03BB; (Intercept)</td>
<td align="center" valign="top">1.48</td>
<td align="center" valign="top">0.19</td>
<td align="center" valign="top">1.09</td>
<td align="center" valign="top">1.83</td>
</tr>
<tr>
<td align="left" valign="top">Wetland</td>
<td align="center" valign="top">0.69</td>
<td align="center" valign="top">0.35</td>
<td align="center" valign="top">0.02</td>
<td align="center" valign="top">1.40</td>
</tr>
<tr>
<td align="left" valign="top">Urban</td>
<td align="center" valign="top">&#x2212;11.11</td>
<td align="center" valign="top">2.12</td>
<td align="center" valign="top">&#x2212;15.51</td>
<td align="center" valign="top">&#x2212;7.24</td>
</tr>
<tr>
<td align="left" valign="top" colspan="5">Carcass entries (&#x03B3;)</td>
</tr>
<tr>
<td align="left" valign="top">&#x03B3; (Intercept)</td>
<td align="center" valign="top">1.41</td>
<td align="center" valign="top">0.07</td>
<td align="center" valign="top">1.26</td>
<td align="center" valign="top">1.55</td>
</tr>
<tr>
<td align="left" valign="top">Wetland</td>
<td align="center" valign="top">0.48</td>
<td align="center" valign="top">0.11</td>
<td align="center" valign="top">0.25</td>
<td align="center" valign="top">0.70</td>
</tr>
<tr>
<td align="left" valign="top">Rain</td>
<td align="center" valign="top">0.73</td>
<td align="center" valign="top">0.06</td>
<td align="center" valign="top">0.60</td>
<td align="center" valign="top">0.86</td>
</tr>
<tr>
<td align="left" valign="top" colspan="5">Persistence (&#x03C6;)</td>
</tr>
<tr>
<td align="left" valign="top">Traffic low (Int)</td>
<td align="center" valign="top">1.19</td>
<td align="center" valign="top">0.15</td>
<td align="center" valign="top">0.92</td>
<td align="center" valign="top">1.50</td>
</tr>
<tr>
<td align="left" valign="top">Traffic medium (Int)</td>
<td align="center" valign="top">1.61</td>
<td align="center" valign="top">0.15</td>
<td align="center" valign="top">1.33</td>
<td align="center" valign="top">1.91</td>
</tr>
<tr>
<td align="left" valign="top">Traffic high (Int)</td>
<td align="center" valign="top">&#x2212;4.33</td>
<td align="center" valign="top">1.37</td>
<td align="center" valign="top">&#x2212;7.66</td>
<td align="center" valign="top">&#x2212;2.21</td>
</tr>
<tr>
<td align="left" valign="top">Day</td>
<td align="center" valign="top">&#x2212;1.22</td>
<td align="center" valign="top">0.15</td>
<td align="center" valign="top">&#x2212;1.52</td>
<td align="center" valign="top">&#x2212;0.93</td>
</tr>
<tr>
<td align="left" valign="top" colspan="5">Detection (<italic>p</italic>)</td>
</tr>
<tr>
<td align="left" valign="top"><italic>p</italic> (Constant)</td>
<td align="center" valign="top">0.69</td>
<td align="center" valign="top">0.1</td>
<td align="center" valign="top">0.66</td>
<td align="center" valign="top">0.72</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<p>Wetland&#x2009;=&#x2009;proportion of wetlands (200&#x2009;m buffer around segment); urban&#x2009;=&#x2009;proportion of urban areas (200&#x2009;m buffer around segment); rain&#x2009;=&#x2009;presence of rainfall in the interval; traffic&#x2009;=&#x2009;classification of traffic category for segments; day&#x2009;=&#x2009;daytime, nighttime is fixed at the intercept. The detection parameter p is in the probability scale.</p>
</table-wrap-foot>
</table-wrap>
<p>Landscape transition rate varied from 0 to 98% of conversion. The median of the estimated fatality rate was 9.99 individuals per day and the median of the landscape transition rate was 5% in a 10-year interval. Ten segments were prioritized to receive the mitigation actions with these thresholds for fatality estimates and landscape stability, meaning a 5-fold reduction of segment numbers (<xref rid="fig4" ref-type="fig">Figure 4</xref>).</p>
<fig position="float" id="fig4">
<label>Figure 4</label>
<caption>
<p>Segment prioritization to receive mitigation actions for amphibian roadkills, based on fatality estimation and landscape stability. The red lines are the threshold defined by the median values of the land-cover transition rate (5% of landscape transition) and the fatality estimate (9.99 individuals per day). Priority segments are within the shaded box. Numbers correspond to segment IDs and bars to the credibility intervals of fatality estimates (<xref ref-type="supplementary-material" rid="SM1">Supplementary material 3</xref>).</p>
</caption>
<graphic xlink:href="fevo-11-1123292-g004.tif"/>
</fig>
</sec>
<sec id="sec11" sec-type="discussions">
<title>Discussion</title>
<p>Although amphibians are often a major group affected by roadkill (<xref ref-type="bibr" rid="ref13">Fahrig et al., 1995</xref>; <xref ref-type="bibr" rid="ref16">Glista et al., 2008</xref>; <xref ref-type="bibr" rid="ref6">Coelho et al., 2012</xref>), planning efficient mitigation actions for this group imposes challenges given the usual difficulty to survey their carcasses. In order to obtain reliable estimates of amphibian roadkill rates and propose enduring mitigation measures, we present a prioritization framework based on a pre-selection of segments to be surveyed, an explicit modeling of fatalities with imperfect detection, and an evaluation of landscape stability. With this approach, we were able to identify 10 high-priority 100&#x2009;m-segments to receive mitigation measures, i.e., 1&#x2009;km in a context of about 100&#x2009;km of road.</p>
<p>By choosing segments more likely to concentrate amphibian roadkills, we have reduced to 5% the length of road to be sampled. The usual small size of amphibians makes them hard to detect from traditional carcass survey methods (i.e., by car). By searching amphibian carcasses on foot, we obtained a carcass detection probability of ~70% by each pair of observers, which we considered quite good for this group. Moreover, the spatiotemporally replicated design proposed here requires carrying out counts in multiple visits at the segments, making more difficult to cover a large road extent. Therefore, given the logistic constraints to survey amphibian carcasses on foot at extensive roads, pre-selecting segments based on habitat features is a way to make sampling more feasible. Importantly, the pre-selection criteria must be chosen according to the habitat associations of each target group.</p>
<p>Spatiotemporally replicated counts of carcasses can be a cost-effective method to robustly estimate roadkill patterns. Fitting these counts with dynamic N-mixture models enables to explicitly derive roadkill rates for known time intervals (time between visits), while formally accommodating the potential sources of error (and their heterogeneity) in the same modelling structure. Previous studies have also used carcass counts or occurrences split into segments to model spatial variation on roadkills and identify hotspots based on a Poisson distribution (e.g., <xref ref-type="bibr" rid="ref44">Santos et al., 2017</xref>; <xref ref-type="bibr" rid="ref30">Lin et al., 2019</xref>). However, such approaches fail in accounting for imperfect detection (and even less the possibility of modeling the heterogeneity in persistence and detection) and do not provide reliable explicit rates of roadkills. Our directly derived roadkill rates also have the advantage of being comparable among studies, species or regions. Sources of errors (persistence and detection) in roadkill assessments are commonly addressed using trial experiments in which a known number of carcasses is disposed on the road (<xref ref-type="bibr" rid="ref1">Barrientos et al., 2018</xref>; <xref ref-type="bibr" rid="ref17">Gon&#x00E7;alves et al., 2018</xref>). However, there might be spatial and temporal variations in persistence and detection that are unfeasible to capture and represent with experiments. For example, as we found here, carcass persistence presented considerable variations according to the traffic volume at the segment and the period of the day. Not accounting in trial experiments for such heterogeneities may produce biased estimation of roadkill patterns. Some studies have made attempts to use hierarchical models in the context of roadkill data to identify priority segments while accounting for imperfect detection (e.g., <xref ref-type="bibr" rid="ref46">Santos et al., 2018</xref>; <xref ref-type="bibr" rid="ref21">Hallisey et al., 2022</xref>). Nevertheless, the approach adopted in these studies uses detection/non-detection data and makes inferences on &#x201C;carcass occupancy&#x201D; for a wide-time window, and not roadkill numbers.</p>
<p>Revealing effects of spatial and/or temporal covariates in the roadkill rates can be useful, for example, to predict fatalities hotspots in roads planned to be constructed or to plan carcass surveys in moments that patterns would be more highlighted in data. As expected, we found here that wetland coverage (high-quality habitat for most amphibian species in the studied region) in the road surroundings influenced the mean number of amphibians roadkilled. Segments with 90% of wetland coverage can present on average 47% more fatalities than segments with 10%. Such identified relationships could be applied to predict segments with potential higher roadkill rates in other roads with similar landscape characteristics. Moreover, the presence of rain during the interval between sampling visits resulted in about twice higher amphibian fatalities than intervals without rain. When planning carcass surveys, this kind of temporal variation should be taken into account to prioritize periods that might maximize the detection of spatial patterns in roadkill rates.</p>
<p>One advantage of the modeling approach we used is that it allows ecologists to estimate the dynamic parameters without marking individuals (<xref ref-type="bibr" rid="ref8">Dail and Madsen, 2011</xref>; <xref ref-type="bibr" rid="ref9">D&#x00E9;nes et al., 2015</xref>), as it was proposed by <xref ref-type="bibr" rid="ref37">P&#x00E9;ron et al. (2013)</xref>. An important assumption of capture-recapture models is that marked and unmarked individuals have the same persistence and detection probabilities. By fitting carcass count data with N-mixture models, we avoided the need of marking the small amphibian carcasses, procedure that is logistically difficult and could, for example, influence later detections or affect the persistence of carcasses that were adhered to the substrate. However, because of the lack of information on individual capture histories, dynamic N-mixture models could sometimes present problems in parsing out entry and persistence processes (<xref ref-type="bibr" rid="ref28">K&#x00E9;ry and Royle, 2021</xref>). Despite this issue may result in biased absolute roadkill estimation, this approach is still useful in relative terms (i.e., which sites present higher roadkill rates) to identify priority sites for mitigation. One alternative to ensure unbiased absolute roadkill estimations is to mark just a few individuals to directly inform entry and persistence processes.</p>
<p>Our framework recognized the priority road segments for amphibian mitigation not only identifying at which places animals tend to die more, but also including landscape conversion as a long-lasting criterion. We highlight the importance of considering the endurance of mitigation actions jointly with higher roadkill rates to ensure effective measures in long-term. Other criteria than lower landscape conversion rates could be used depending on the context of the surrounding landscape, such as where roads which are built in pristine areas (e.g., Amazonian Arc of Deforestation). Moreover, depending on the mitigation objectives, prioritization could consider other criteria, such as the number of threatened species per site, or <italic>per capita</italic> mortality, if cascading population effects are the main concern (<xref ref-type="bibr" rid="ref54">Teixeira et al., 2017</xref>). When data on the population in the surroundings are available and when the maintenance of a population is a conservation target, this kind of information can provide important assets to use in the prioritization step. There have been cost-effective manners of obtaining population data for one or more amphibian species in the surrounding of roads, in order to integrate information in mitigation planning, such as automatic acoustic recordings (<xref ref-type="bibr" rid="ref31">Marques et al., 2013</xref>) or citizen science programs that monitor amphibian migrations [e.g., Toads on Roads (<xref ref-type="bibr" rid="ref38">Petrovan et al., 2020</xref>); Big Night programs (<xref ref-type="bibr" rid="ref52">Sterrett et al., 2019</xref>)].</p>
<p>We proposed our sampling and analytical framework to estimate amphibian roadkill rates accounting for imperfect detection and its heterogeneity. The modeling approach can be expanded in order to accommodate other sources of variation, for example, differentiating species and including them as random effects in multi-species models (<xref ref-type="bibr" rid="ref60">Yamaura et al., 2012</xref>; <xref ref-type="bibr" rid="ref10">Dorazio et al., 2015</xref>). This might be particularly important when there is interest in threatened species. Also, although we have focused on amphibians, this framework could be useful to identify locals for mitigation measures for any roadkill target, especially when marking individuals is a difficult task.</p>
<p>Our study set out to better support mitigation prioritization decisions and such information can be used to inform where to implement road management actions. However, in terms of conservation, an imperative further step is to indicate and implement appropriate mitigation measures for road management to reduce roadkill of the target group studied here. Fencing is the most suitable spatial mitigation structure to maintain amphibians off the road and mitigate roadkills (<xref ref-type="bibr" rid="ref7">Cunnington et al., 2014</xref>). Also, it is essential to promote safe crossings for amphibians daily movements with the implementation of wildlife passages (<xref ref-type="bibr" rid="ref59">Woltz et al., 2008</xref>; <xref ref-type="bibr" rid="ref2">Beebee, 2013</xref>; <xref ref-type="bibr" rid="ref26">Jarvis et al., 2019</xref>). We highlight that the implementation of those mitigation measures is not the final step either since their effectiveness should be evaluated with robust designs aiming to collect the relevant evidence (<xref ref-type="bibr" rid="ref22">Helldin and Petrovan, 2019</xref>; <xref ref-type="bibr" rid="ref33">Ottburg and van der Grift Edgar, 2019</xref>; <xref ref-type="bibr" rid="ref47">Schmidt et al., 2020</xref>).</p>
<p>In conclusion, our study developed a sampling and analytical framework to improve road management toward spatial prioritization of mitigation measures for amphibian roadkill. We proposed six steps to better support amphibian conservation decision making and such information can be used to inform where to implement road management actions. Our findings are also useful to plan future carcass surveys in locations and moments that patterns would be more suitable.</p>
</sec>
<sec id="sec12" sec-type="data-availability">
<title>Data availability statement</title>
<p>The original contributions presented in the study are publicly available. This data can be found here: <ext-link xlink:href="https://figshare.com/s/0cebdfcedb591dea6fed" ext-link-type="uri">https://figshare.com/s/0cebdfcedb591dea6fed</ext-link>.</p>
</sec>
<sec id="sec13">
<title>Author contributions</title>
<p>All authors conceived the idea of the manuscript, designed the survey, interpreted the results, wrote sections in all drafts, contributed critically to the writing, and gave final approval for publication. IB developed the analytical approach. JB and CZ collected roadkill data. JB, CZ, and LG compiled and synthesized data. JB and IB performed data analyses. JB, CZ, and IB made figures and tables. LG and IB led the writing process, working on the final version of the manuscript. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec id="sec14" sec-type="funding-information">
<title>Funding</title>
<p>Financial support was provided by Funda&#x00E7;&#x00E3;o Empresa Escola de Engenharia da Universidade Federal do Rio Grande do Sul for LG, IB, CZ, JB, and AK (Projects FEENG/307 and FEENG/437). LG is funded by Programa USP Sustentabilidade da Superintend&#x00EA;ncia de Gest&#x00E3;o Ambiental da Universidade de S&#x00E3;o Paulo.</p>
</sec>
<sec id="conf1" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="sec100" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<ack>
<p>We thank STE &#x2013; Servi&#x00E7;os T&#x00E9;cnicos de Engenharia S.A., EGR &#x2013; Empresa Ga&#x00FA;cha de Rodovias, and Fepam &#x2013; Funda&#x00E7;&#x00E3;o Estadual de Prote&#x00E7;&#x00E3;o Ambiental Henrique Luis Roessler for the opportunity to apply our framework in the mitigation planning of roads in the renewing process of the operating environmental license. We thank Guilherme Iablonoviski and Igor Pfeifer Coelho for the support in the land cover maps; Dener Heiermann and Maria Eduarda Bernardino Cunha for amphibian identification; and all survey teams for their effort: Ingridi Camboim Franceschi, Samuel Ferreira Gohlke, Priscila Cort&#x00EA;z Barth, Maria Eduarda Bernardino Cunha, Nikolas Raphael Oliveira Giannakos, Giulia Dorneles Barbieri de Campos, Isabel Salgueiro Lermen, Igor Oliveira Gon&#x00E7;alves, Mait&#x00EA; Zanella Busanello, Dener Heiermann, &#x00C9;rico Moreira de Miranda, and Deivid Pereira.</p>
</ack>
<sec id="sec16" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary material for this article can be found online at: <ext-link xlink:href="https://www.frontiersin.org/articles/10.3389/fevo.2023.1123292/full#supplementary-material" ext-link-type="uri">https://www.frontiersin.org/articles/10.3389/fevo.2023.1123292/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Data_Sheet_1.docx" id="SM1" mimetype="application/vnd.openxmlformats-officedocument.wordprocessingml.document" xmlns:xlink="http://www.w3.org/1999/xlink"/>
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