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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Earth Sci.</journal-id>
<journal-title>Frontiers in Earth Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Earth Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-6463</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">748401</article-id>
<article-id pub-id-type="doi">10.3389/feart.2021.748401</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Earth Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Waveform Decontamination for Improving Satellite Radar Altimeter Data Over Nearshore Area: Upgraded Algorithm and Validation</article-title>
<alt-title alt-title-type="left-running-head">Wang and Huang</alt-title>
<alt-title alt-title-type="right-running-head">Improve Coastal Sea Surface Heights</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Wang</surname>
<given-names>Haihong</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1256248/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Huang</surname>
<given-names>Zhengkai</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1386623/overview"/>
</contrib>
</contrib-group>
<aff id="aff1">
<label>
<sup>1</sup>
</label>School of Geodesy and Geomatics, Wuhan University, <addr-line>Wuhan</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<label>
<sup>2</sup>
</label>Key Laboratory of Marine Environmental Survey Technology and Application, Ministry of Natural Resources, <addr-line>Guangzhou</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<label>
<sup>3</sup>
</label>School of Civil Engineering and Architecture, East China Jiaotong University, <addr-line>Nanchang</addr-line>, <country>China</country>
</aff>
<aff id="aff4">
<label>
<sup>4</sup>
</label>Key Laboratory of Basin Water Resources and Eco-environmental Science in Hubei Province, Yangtze River Scientific Research Institute, <addr-line>Wuhan</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/762226/overview">Jinyun Guo</ext-link>, Shandong University of Science and Technology, China</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1374342/overview">Yihao Wu</ext-link>, Hohai University, China</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1253493/overview">Shengjun Zhang</ext-link>, Northeastern University, China</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1426356/overview">Nurul Hazrina Idris</ext-link>, University of Technology Malaysia, Malaysia</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Haihong Wang, <email>hhwang@sgg.whu.edu.cn</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Environmental Informatics and Remote Sensing, a section of the journal Frontiers in Earth Science</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>21</day>
<month>09</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>9</volume>
<elocation-id>748401</elocation-id>
<history>
<date date-type="received">
<day>27</day>
<month>07</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>23</day>
<month>08</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2021 Wang and Huang.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Wang and Huang</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these&#x20;terms.</p>
</license>
</permissions>
<abstract>
<p>One of the thorniest problems in altimetry community is retrieving accurate coastal sea surface height, especially in the last several kilometers offshore. It is confirmed in previous studies that decontaminating waveforms is beneficial to improve the quality of coastal SSHs. In this article, we proposed an upgraded strategy for waveform decontamination, including a novel realignment algorithm and gate-wise outlier detector. We validated the new strategy in four test regions using Jason-2 altimeter data. In the validation process, we compared retracked SSHs by 16 retrackers, which include retrackers provided in SGDR (Sensor Geophysical Data Record), ALES (Adaptive Leading Edge Subwaveform), and PISTACH (Prototype Innovant de Syst&#xe8;me de Traitement pour les Applications C&#xf4;ti&#xe8;res et l&#x2019;Hydrologie) products. Comparison results verified that retracking the waveforms decontaminated using our new method can greatly improve the SSHs in the coastal region. The 20% threshold retracker (DW-TR20) and the ICE1 retracker (DW-ICE1) based on the decontaminated waveforms outperform other retrackers, especially in 0&#x2013;4&#xa0;km zone offshore. DW-TR20 and DW-ICE1 can provide robust SSHs with a consistent accuracy in 0&#x2013;20&#xa0;km coastal band and a high correlation (&#x3e;0.9) with nearby gauge data. To conclude, the upgraded waveform decontamination strategy provides a promising solution for coastal altimetry, which makes it possible to extend reliable observations to the last several kilometers offshore.</p>
</abstract>
<kwd-group>
<kwd>coastal altimetry</kwd>
<kwd>sea surface height</kwd>
<kwd>waveform retracking</kwd>
<kwd>waveform decontamination</kwd>
<kwd>Jason-2</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Satellite altimetry is a mature technique for observing the global open ocean from space, providing a wealth of measurements for oceanographic, geodetic, and geophysical applications (<xref ref-type="bibr" rid="B30">Stammer and Cazenave, 2017</xref>; <xref ref-type="bibr" rid="B11">Fu and Cazenave, 2001</xref>). In the past decade, applications further extended to the coastal areas, which triggered a new discipline in the altimetry community, referred to as coastal altimetry (<xref ref-type="bibr" rid="B34">Vignudelli et&#x20;al., 2011</xref>). It dedicates to exploit satellite altimetry from the open ocean to the coasts.</p>
<p>The crucial difficulty for coastal altimetry is that the altimeter data in the coastal zones are seriously degraded. In standard products, data in the coastal zone (up to tens of kilometers from the coast) are usually flagged as bad (<xref ref-type="bibr" rid="B40">Cipollini et al., 2017</xref>; <xref ref-type="bibr" rid="B34">Vignudelli et&#x20;al., 2011</xref>). It will result in no usable data over the coastal strip. Hence, the paramount work of coastal altimetry is retrieving more and better data closer to the coast. In recent years, considerable concern has arisen over this challenging topic and a dramatic effort has been made by the altimetry community of researchers. A series of reprocessed products for coastal applications were developed by some agencies, such as X-TRACK by LEGOS (Laboratoire d&#x2019;Etudes en G&#xe9;ophysique et Oc&#xe9;anographie Spatiales, France) (<xref ref-type="bibr" rid="B2">Birol et&#x20;al., 2017</xref>), ALES (Adaptive Leading Edge Subwaveform) by NOC (National Oceanography Centre, United&#x20;Kingdom) (<xref ref-type="bibr" rid="B26">Passaro et&#x20;al., 2014</xref>), and PISTACH (Prototype Innovant de Syst&#xe8;me de Traitement pour l&#x2019;Altim&#xe9;trie C&#xf4;ti&#xe8;re et l&#x2019;Hydrologie) (<xref ref-type="bibr" rid="B25">Mercier et&#x20;al., 2010</xref>) and PEACHI (the Prototype for Expertise on Altimetry for Coastal, Hydrology and Ice) (<xref ref-type="bibr" rid="B32">Valladeau et&#x20;al., 2015</xref>) by CNES (Centre National d&#x2019;Etudes Spatiales).</p>
<p>The degradation of coastal altimeter data can be attributed to a couple of factors, such as contamination of the radar echoes and inadequate corrections. The most important one is the range error due to the distorted coastal waveforms. The coastal waveforms received by the altimeter will be contaminated by the reflections from land, calm water, or steep waves appearing in the radar footprint (<xref ref-type="bibr" rid="B8">Deng and Featherstone, 2006</xref>; <xref ref-type="bibr" rid="B13">Gomez-Enri et&#x20;al., 2010</xref>). The contaminated waveforms depart from the open-ocean Brown model (<xref ref-type="bibr" rid="B4">Brown, 1977</xref>), which is routinely used for the onboard tracking system. Therefore, erroneous measurements might be derived in coastal regions. During the last few decades, a postprocessing technique referred to as waveform retracking has been extensively applied to overcome this problem. Numerous waveform retracking algorithms were developed that can be categorized into model-based and empirical retrackers (<xref ref-type="bibr" rid="B14">Gommenginger et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B26">Passaro et&#x20;al., 2014</xref>). A number of studies have demonstrated the improvements in both quantity and quality of the coastal measurements when they are reprocessed using waveform retracking methods. Valid measurements after retracking have been approaching to the band of 10&#xa0;km offshore from 50&#xa0;km offshore. However, retrieving valid data over the last few kilometers to the coastline is still a challenge (<xref ref-type="bibr" rid="B31">Tseng et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B17">Huang et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B33">Vignudelli et&#x20;al., 2019</xref>).</p>
<p>The closer to shore, the more complex the waveform is (<xref ref-type="bibr" rid="B6">Chaudhary et&#x20;al., 2015</xref>; <xref ref-type="bibr" rid="B19">Idris et&#x20;al., 2017</xref>, <xref ref-type="bibr" rid="B1">Bignalet-Cazalet et&#x20;al., 2020</xref>; <xref ref-type="bibr" rid="B40">Sinurata et&#x20;al., 2021</xref>). The traditional retrackers for processing the ocean waveform, neither model-based nor empirical, sometimes fail to retrack the waveform or misestimate parameters in coastal regions due to the severe noise in the coastal waveform. In order to depress the noise, approaches based on the subwaveform containing the leading edge are widely used (<xref ref-type="bibr" rid="B18">Hwang et&#x20;al., 2006</xref>; <xref ref-type="bibr" rid="B15">Guo et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B38">Yang L. et&#x20;al., 2012</xref>; <xref ref-type="bibr" rid="B20">Idris and Deng, 2012</xref>; <xref ref-type="bibr" rid="B27">Passaro et&#x20;al., 2018</xref>). However, it is not easy to accurately extract the subwaveform since the partitioning of the waveform is inevitably disturbed by the signal from non-ocean surfaces (<xref ref-type="bibr" rid="B39">Yang Y. et&#x20;al., 2012</xref>; <xref ref-type="bibr" rid="B17">Huang et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B36">Wang and Ichikawa, 2017</xref>). In the coastal zone, a large portion of altimetric waveforms are corrupted by peaks caused by bright targets inside the illustrated area. These peaks may lead to overestimation of the amplitude of the waveform. For these peaky waveforms, some hybrid models were introduced to refine parameter estimation, e.g., the Brown with Gaussian peak model (<xref ref-type="bibr" rid="B16">Halimi et&#x20;al., 2013</xref>). Another strategy is removing anomalous peaks before retracking (<xref ref-type="bibr" rid="B29">Peng and Deng, 2018</xref>). Based on the stack of successive along-track waveforms (referred to as echogram or radar-gram), parabola traces can be observed at the trailing edge area, which are corresponding to the signals of bright targets within the altimeter footprint (<xref ref-type="bibr" rid="B13">Gomez-Enri et&#x20;al., 2010</xref>). The parabolic feature can be applied to remove the peaky-type noise at the trailing edge caused by fixed-point bright targets (<xref ref-type="bibr" rid="B36">Wang and Ichikawa, 2017</xref>). In a more ordinary way, noise superimposed on the waveform can be suppressed using empirical methods. A waveform modifying procedure based on a preset criterion was proposed to mitigate anomalous peaks in coastal waveforms (0.5&#x2013;7&#xa0;km from coasts) (<xref ref-type="bibr" rid="B31">Tseng et&#x20;al., 2014</xref>). This procedure was further improved by <xref ref-type="bibr" rid="B17">Huang et&#x20;al. (2017)</xref>. Abovementioned studies have consolidated a concept that cleaning the waveform prior to retracking can contribute greatly to retrieving more accurate data closer to the&#x20;coast.</p>
<p>The purpose of this article is to upgrade the waveform decontamination technique and ascertain its effect on improving coastal altimetric data. It has been pointed out that the criteria for selecting reference waveforms and identifying outliers are still open research questions (<xref ref-type="bibr" rid="B17">Huang et&#x20;al., 2017</xref>). In this study, an optimized algorithm for waveform decontamination is presented based on realigned waveforms. More sophisticated criteria are adopted in the new algorithm. The upgraded decontaminating technique will be more stable and robust, especially for waveforms at the last few kilometers to coasts.</p>
</sec>
<sec id="s2">
<title>Data and Study Area</title>
<sec id="s2-1">
<title>Jason-2 Sensor Geophysical Data Record (SGDR)</title>
<p>The altimetry satellite Jason-2 was launched on June 20, 2008. The main objective of Jason-2 is to measure ocean surface ensuring the continuity of the TOPEX/Poseidon and Jason-1 missions. Due to the improvements in the echo acquisition and tracking modes, the Poseidon-3 altimeter onboard Jason-2 maintained significantly higher data availability over land or mixed land-sea terrain in comparison with its predecessor Poseidon-2 onboard Jason-1 (<xref ref-type="bibr" rid="B9">Desjonqu&#xe8;res et&#x20;al., 2010</xref>). It guaranteed an additional goal of Jason-2, which is to provide measurements over coastal areas and inland waters.</p>
<p>For retracking, SGDR product should be used. The Jason-2 SGDR products (version d) are downloaded from Archiving, Validation, and Interpretation of Satellite Oceanography (AVISO, <ext-link ext-link-type="uri" xlink:href="https://www.aviso.altimetry.fr">https://www.aviso.altimetry.fr</ext-link>). The dataset provides 1 and 20Hz sampling values. Waveforms contained in the dataset&#x20;allow customized retracking for refining measurements. The dataset provides four kinds of ranges derived using different retracking strategies. One is the onboard operating tracker (hereafter referred to as &#x201c;Raw&#x201d;). The other three retrackers are MLE4 (4-parameter Maximum Likelihood Estimator), MLE3 (3-parameter), and ICE, respectively (<xref ref-type="bibr" rid="B10">Dumont et&#x20;al., 2017</xref>).</p>
</sec>
<sec id="s2-2">
<title>Coastal and Hydrology Altimetry (PISTACH) Products</title>
<p>The PISTACH products were developed by Collecte Localization Satellites (CLS) with support from CNES. PISTACH is dedicated to refining Jason-2 data over coastal regions and inland waters for coastal and hydrological applications. For this purpose, several new retracking algorithms were developed. A set of four alternative retracked ranges are provided in the PISTACH products. The four retrackers are ICE1, ICE3, RED3, and OCE3, respectively. Furthermore, the PISTACH products include several state-of-the-art geophysical corrections, e.g., wet tropospheric corrections and sea state bias corrections. More details about these retrackers are available in the PISTACH handbook (<xref ref-type="bibr" rid="B25">Mercier et&#x20;al., 2010</xref>). These products can be accessed via AVISO ftp (<ext-link ext-link-type="uri" xlink:href="ftp://ftp-access.aviso.altimetry.fr/pub/oceano/pistach">ftp://ftp-access.aviso.altimetry.fr/pub/oceano/pistach</ext-link>).</p>
</sec>
<sec id="s2-3">
<title>ALES Dataset</title>
<p>The ALES Jason-2 dataset was produced by DGFI-TUM (Deutsches Geod&#xe4;tisches Forschungsinstitut Technische Universit&#xe4;t M&#xfc;nchen) and distributed via Open Altimeter Database (OpenADB, <ext-link ext-link-type="uri" xlink:href="https://www.openadb.dgfi.tum.de/">https://www.openadb.dgfi.tum.de</ext-link>). This dataset was a reprocessed product using the ALES retracker. This retracker selects part of each waveform by adapting its width according to the significant wave height and models the subwaveform with the classic Brown model by means of least square estimation (<xref ref-type="bibr" rid="B26">Passaro et&#x20;al., 2014</xref>). A number of studied have validated that ALES has good performance over coastal areas (<xref ref-type="bibr" rid="B26">Passaro et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B37">Xu et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B12">G&#xf3;mez-Enri et&#x20;al., 2019</xref>; <xref ref-type="bibr" rid="B3">Birol et&#x20;al., 2021</xref>). As well as PISTACH, the ALES product is used as a reference to evaluate the performance of the new retracking scheme proposed in this&#x20;work.</p>
</sec>
<sec id="s2-4">
<title>Tide Gauge Data</title>
<p>Sea level measured by tide gauge is usually used to validate the altimeter-derived sea surface heights (SSHs). Tide gauge data used in this study are the Research Quality Data (RQD) at hourly resolution, achieved by UHSLC (University of Hawaii Sea Level Center) (<xref ref-type="bibr" rid="B5">Caldwell et&#x20;al., 2015</xref>). The RQD is a final science-ready dataset with quality control, which can be downloaded from the ftp sever of UHSLC (<ext-link ext-link-type="uri" xlink:href="ftp://ftp.soest.hawaii.edu/uhslc/rqds">ftp://ftp.soest.hawaii.edu/uhslc/rqds</ext-link>). Four stations equipped with float gauge were used for validation. The four stations are located at Los Angeles (United&#x20;States), Cape May (United&#x20;States), Funchal (Madeira Island), and Ko Lak (Thailand), respectively. The float gauge has an accuracy of several millimeters. Thus, the tide gauge data are preferred for validating altimeter-derived SSHs. However, each tide station has a unique local datum, and datum information of some stations are not given. Therefore, relative validation is frequently conducted by removing their mean values.</p>
</sec>
<sec id="s2-5">
<title>Study Areas</title>
<p>
<xref ref-type="fig" rid="F1">Figure&#x20;1</xref> shows four test areas chosen to validate the upgraded strategy, which are same as those in <xref ref-type="bibr" rid="B17">Huang et&#x20;al. (2017)</xref>. One Jason-2 pass (red line) accompanied by a tide gauge station (white pentacle) nearby is used for each case. Cycle 1-252 altimeter data were used in this study. In each area, the coastal topography and ocean floor are very different from each other, representing different sea state and surface reflectivity. General information of these regions are tabulated in <xref ref-type="table" rid="T1">Table&#x20;1</xref>. In Los Angeles, the coastal topography is a 500&#xa0;m high mountain. The along-track bathymetry within 10&#xa0;km offshore varies from 0 to 600&#xa0;m, which has a sharp slope within 4&#x2013;6&#xa0;km. The terrain in Cape May is very flat and low altitude and ocean water is very shallow. While the third case is near Madeira Island, where the coast is very steep and the bathymetry sharply drops by 2000&#xa0;m within 4&#xa0;km. In the last case, the coast terrain is smooth and water depth is shallow. However, the satellite track is very close to the coastline, which induces a great amount of noise in altimeter waveforms. According to the classification of waveforms in PISTACH, percentages of each waveform class within 20&#xa0;km offshore are listed in <xref ref-type="table" rid="T1">Table&#x20;1</xref>. It clearly shows that serious waveform contamination occurred in each case, especially in the Ko Lak region.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Four areas for validation near tide gauge stations: <bold>(A)</bold> Los Angeles, California, United&#x20;States; <bold>(B)</bold> Cape May, New Jersey, United&#x20;States; <bold>(C)</bold> Funchal, Maderia Island, Portugal; <bold>(D)</bold> Ko Lak, Thailand. The red line denotes ground track of Jason-2. The white pentacle shows the position of tide gauge. The rectangle with white dashed line sketches the test area.</p>
</caption>
<graphic xlink:href="feart-09-748401-g001.tif"/>
</fig>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>General information of study&#x20;areas.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th colspan="2" align="left">Study area</th>
<th align="center">Los Angeles</th>
<th align="center">Cape May</th>
<th align="center">Funchal</th>
<th align="center">Ko Lak</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td rowspan="3" align="left">Gauge information</td>
<td align="left">Station location</td>
<td align="center">118.27&#xb0;W, 33.72&#xb0;N</td>
<td align="center">74.96&#xb0;W, 38.97N</td>
<td align="center">16.91&#xb0;W, 32.64&#xb0;N</td>
<td align="center">99.82&#xb0;E, 11.80&#xb0;N</td>
</tr>
<tr>
<td align="left">Nearest distance to the track (km)</td>
<td align="center">7.0</td>
<td align="center">7.3</td>
<td align="center">6.8</td>
<td align="center">4.8</td>
</tr>
<tr>
<td align="left">Last date of gauge data</td>
<td align="center">Dec 31, 2014</td>
<td align="center">Dec 31, 2014</td>
<td align="center">Dec 31, 2013</td>
<td align="center">Dec 31, 2015</td>
</tr>
<tr>
<td colspan="2" align="left">Satellite ground track</td>
<td align="center">119, ascending</td>
<td align="center">228, descending</td>
<td align="center">061, ascending</td>
<td align="center">242, descending</td>
</tr>
<tr>
<td colspan="2" align="left">Bathymetry within 10&#xa0;km offshore (m)</td>
<td align="center">0&#x2013;660</td>
<td align="center">0&#x2013;12</td>
<td align="center">0&#x2013;2200</td>
<td align="center">0&#x2013;23</td>
</tr>
<tr>
<td rowspan="4" align="left">Waveform class</td>
<td align="left">Brown</td>
<td align="center">70.3%</td>
<td align="center">83.3%</td>
<td align="center">86.7%</td>
<td align="center">55.5%</td>
</tr>
<tr>
<td align="left">Brown &#x2b; noise</td>
<td align="center">19.9%</td>
<td align="center">15.1%</td>
<td align="center">8.9%</td>
<td align="center">37.3%</td>
</tr>
<tr>
<td align="left">Peak</td>
<td align="center">2.4%</td>
<td align="center">0</td>
<td align="center">2.4%</td>
<td align="center">3.8%</td>
</tr>
<tr>
<td align="left">Peak &#x2b; noise</td>
<td align="center">6.2%</td>
<td align="center">1.4%</td>
<td align="center">1.9%</td>
<td align="center">1.8%</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
</sec>
<sec sec-type="materials|methods" id="s3">
<title>Materials and Methods</title>
<p>In this section, we will introduce our new strategy for retrieving coastal SSHs based on the decontamination technique. Compared with the previous method, two significant improvements were made in the new strategy. Firstly, we proposed an algorithm to realign waveforms in the echogram before outlier detection, aiming to moderate the influence of shifting of the leading edge. Secondly, we substituted the single criterion in the old method with the gate-wise criteria for outlier detection in each echogram.</p>
<sec id="s3-1">
<title>Sea Surface Height</title>
<p>SSH is the height of sea surface with respect to the reference ellipsoid. By altimetry, SSH can be determined by subtracting altimeter range from the altitude of the satellite. Ranges measured by the altimeter must be corrected for instrument effects, path delay in the atmosphere, and the nature of the reflecting sea surface. The resultant SSH is given by<disp-formula id="e1">
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<mml:mrow>
<mml:mi mathvariant="italic">R</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:mi mathvariant="normal">&#x394;</mml:mi>
<mml:msub>
<mml:mi mathvariant="italic">R</mml:mi>
<mml:mrow>
<mml:mi mathvariant="italic">instr</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2b;</mml:mo>
<mml:mi mathvariant="normal">&#x394;</mml:mi>
<mml:msub>
<mml:mi mathvariant="italic">R</mml:mi>
<mml:mrow>
<mml:mi mathvariant="italic">atmos</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2b;</mml:mo>
<mml:mi mathvariant="normal">&#x394;</mml:mi>
<mml:msub>
<mml:mi mathvariant="italic">R</mml:mi>
<mml:mrow>
<mml:mi mathvariant="italic">ssb</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2b;</mml:mo>
<mml:mi mathvariant="normal">&#x394;</mml:mi>
<mml:msub>
<mml:mi mathvariant="italic">R</mml:mi>
<mml:mrow>
<mml:mi mathvariant="italic">dyn</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2b;</mml:mo>
<mml:mi mathvariant="normal">&#x394;</mml:mi>
<mml:msub>
<mml:mi mathvariant="italic">R</mml:mi>
<mml:mrow>
<mml:mi mathvariant="italic">retrack</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:mtd>
</mml:mtr>
</mml:mtable>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
<label>(1)</label>
</disp-formula>where <italic>h</italic> is the altimetry-derived SSH, <italic>Alt</italic> is the orbit altitude of the satellite, <italic>R</italic> is the altimeter range, and &#x394;R represents corrections for the range. The subscripts &#x201c;instr,&#x201d; &#x201c;atmos,&#x201d; and &#x201c;ssb&#x201d; indicate instrumental corrections, atmospheric corrections, and sea state bias (SSB) corrections, respectively. &#x394;Rdyn is the correction for the dynamic response to atmospheric pressure. The last item &#x394;Rretrack is an optional correction, which is applied only when retracking is implemented.</p>
<p>In general, instrumental corrections consist of the distance offset between antenna and center of gravity, USO (Ultra Stable Oscillator) frequency drift correction, internal path correction, Doppler correction, modeled instrumental errors correction, and system bias. For the Jason-2 SGDR products, all retracked ranges have been corrected for all instrumental corrections. It is noteworthy that the last three corrections are not included in raw ranges. They should be additionally counted if one makes use of the raw ranges or implements customized retracking processing. Atmospheric corrections consist of wet troposphere correction, dry troposphere correction, and ionosphere correction. Model-derived atmospheric corrections in SGDR are used in this study. The SSB and dynamic atmosphere corrections used in the study are retrieved from the PISTACH product, which is suggested in the previous study (<xref ref-type="bibr" rid="B17">Huang et&#x20;al., 2017</xref>).</p>
</sec>
<sec id="s3-2">
<title>Waveform Decontamination and Retracking</title>
<p>The main idea of waveform decontamination is identifying and amending anomalous samples in the waveform according to some preset criteria. The criteria have to be determined based on each echogram as no other a priori information can be available. The reference waveform, which is determined by averaging whole waveforms in the echogram, plays an important role in this procedure. It is shown that the migration of the leading edge of along-track waveforms will lead to misjudgment of contaminated gates due to improper selection of the reference waveform (<xref ref-type="bibr" rid="B17">Huang et&#x20;al., 2017</xref>). In order to reduce the effect caused by the shift of the leading edge, a method is proposed to realign waveforms in the echogram (see <italic>Realignment of Waveforms</italic>). In addition, new algorithms are adopted for the detection and remedy of outliers (see <italic>Outlier Detection</italic>).</p>
<sec id="s3-2-1">
<title>Realignment of Waveforms</title>
<p>Shifts of the leading edges in the echogram can cause serious distortion of the leading edge of the reference waveform. It is better to align waveforms prior to averaging. Here, it is called realignment because the onboard tracker had tried to align the leading edges centered on a nominal gate. To do this, the offset of each waveform relative to a given waveform should be determined and then eliminated by translation along the time (or range) axis. According to the tracking principal of the altimeter, the relative offset can be estimated using the difference of surface topography by<disp-formula id="e2">
<mml:math id="m2">
<mml:mrow>
<mml:mtable>
<mml:mtr>
<mml:mtd>
<mml:mrow>
<mml:mi>&#x394;</mml:mi>
<mml:msub>
<mml:mi mathvariant="italic">G</mml:mi>
<mml:mi mathvariant="italic">i</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mi mathvariant="normal">&#x394;</mml:mi>
<mml:msub>
<mml:mi mathvariant="italic">h</mml:mi>
<mml:mi mathvariant="italic">i</mml:mi>
</mml:msub>
<mml:mo>&#x2212;</mml:mo>
<mml:mi mathvariant="normal">&#x394;</mml:mi>
<mml:msub>
<mml:mi mathvariant="italic">N</mml:mi>
<mml:mi mathvariant="italic">i</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mi mathvariant="italic">d</mml:mi>
</mml:mfrac>
</mml:mrow>
</mml:mtd>
</mml:mtr>
</mml:mtable>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
<label>(2)</label>
</disp-formula>where &#x394;<italic>G</italic>
<sub>
<italic>i</italic>
</sub> is the offset of the <italic>i</italic>th waveform relative to the selected waveform (farthest to the coast in this study), &#x394;<italic>h</italic>
<sub>
<italic>i</italic>
</sub> is the SSH difference derived from the raw SSHs, &#x394;<italic>N</italic>
<sub>
<italic>i</italic>
</sub> is the difference of the geoid undulations, and <italic>d</italic> is the range resolution of the altimeter (about 0.47&#xa0;m for Jason-2). The offset should be rounded to the nearest whole number because waveform gates require integer values. The EGM 2008 (<xref ref-type="bibr" rid="B28">Pavlis et&#x20;al., 2012</xref>) geoid model was used in this study. The accuracy of EGM2008 marine geoid is in centimeter level, which is much less than the range resolution of the altimeter. So, the impact of the geoid error can be ignored when estimating the relative offset.</p>
<p>Let the matrix <inline-formula id="inf1">
<mml:math id="m3">
<mml:mrow>
<mml:mi mathvariant="bold-italic">P</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mrow>
<mml:mo>{</mml:mo>
<mml:mi>P</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>k</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>,</mml:mo>
<mml:mtext>&#xa0;</mml:mtext>
<mml:mi>i</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1</mml:mn>
<mml:mo>&#x22ef;</mml:mo>
<mml:mi>n</mml:mi>
<mml:mo>;</mml:mo>
<mml:mi>k</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1</mml:mn>
<mml:mo>&#x22ef;</mml:mo>
<mml:mn>104</mml:mn>
<mml:mo>}</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:math>
</inline-formula> denote raw waveforms in the echogram of a coastal track and <inline-formula id="inf2">
<mml:math id="m4">
<mml:mrow>
<mml:mover accent="true">
<mml:mi mathvariant="bold-italic">P</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula> denote the realigned waveforms. Each row of the matrix is a waveform; that is, the row index <italic>i</italic> is the waveform number along track and the column index <italic>k</italic> is the gate number. <italic>n</italic> is the total number of waveforms. Then, the realigned waveforms can be expressed as follows:<disp-formula id="e3">
<mml:math id="m5">
<mml:mrow>
<mml:mtable>
<mml:mtr>
<mml:mtd>
<mml:mrow>
<mml:mrow>
<mml:mover accent="true">
<mml:mi mathvariant="italic">P</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi mathvariant="italic">i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi mathvariant="italic">k</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x3d;</mml:mo>
<mml:mrow>
<mml:mo>{</mml:mo>
<mml:mrow>
<mml:mtable>
<mml:mtr>
<mml:mtd>
<mml:mrow>
<mml:mi>P</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi mathvariant="italic">i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi mathvariant="italic">k</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:mi mathvariant="normal">&#x394;</mml:mi>
<mml:msub>
<mml:mi mathvariant="italic">G</mml:mi>
<mml:mi mathvariant="italic">i</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>,</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>i</mml:mi>
<mml:mi>f</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>&#x394;</mml:mi>
<mml:msub>
<mml:mi mathvariant="italic">G</mml:mi>
<mml:mi mathvariant="bold-italic">i</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x3e;</mml:mo>
<mml:mn>0</mml:mn>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>a</mml:mi>
<mml:mi>n</mml:mi>
<mml:mi>d</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>&#x394;</mml:mi>
<mml:msub>
<mml:mi mathvariant="italic">G</mml:mi>
<mml:mi mathvariant="bold-italic">i</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x2264;</mml:mo>
<mml:mn>104</mml:mn>
</mml:mrow>
</mml:mtd>
</mml:mtr>
<mml:mtr>
<mml:mtd>
<mml:mrow>
<mml:mi>n</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>l</mml:mi>
<mml:mi>l</mml:mi>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>v</mml:mi>
<mml:mi>a</mml:mi>
<mml:mi>l</mml:mi>
<mml:mi>u</mml:mi>
<mml:mi>e</mml:mi>
<mml:mo>,</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mo>&#xa0;</mml:mo>
<mml:mi>e</mml:mi>
<mml:mi>l</mml:mi>
<mml:mi>s</mml:mi>
<mml:mi>e</mml:mi>
<mml:mo>&#xa0;</mml:mo>
</mml:mrow>
</mml:mtd>
</mml:mtr>
</mml:mtable>
</mml:mrow>
</mml:mrow>
</mml:mrow>
</mml:mtd>
</mml:mtr>
</mml:mtable>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
<label>(3)</label>
</disp-formula>
</p>
<p>
<xref ref-type="fig" rid="F2">Figure&#x20;2</xref> shows an example of a Jason-2 coastal track, which is a descending pass departing from the coast. Apparent shifts of the leading edges can be observed near the coast (latitude &#x3e;38.8&#xb0;N) in the raw waveforms (<xref ref-type="fig" rid="F2">Figure&#x20;2A</xref>). Two parabola traces due to bright targets are notable prior to the leading edges between 38.63&#xb0; and 38.7&#xb0;. <xref ref-type="fig" rid="F2">Figure&#x20;2B</xref> indicates that the height differences are closely correlated with the location of the leading edges. As observed in <xref ref-type="fig" rid="F2">Figure&#x20;2C</xref>, shifts of the leading edges had been efficiently reduced in the realigned waveforms based on the offsets derived from the height differences.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Illustration of the waveform contamination procedure using a Jason-2 coastal track (Pass &#x23;228, cycle &#x23;225). <bold>(A)</bold> Raw waveforms. <bold>(B)</bold> Translation offsets derived from height differences. <bold>(C)</bold> Realigned waveforms. <bold>(D)</bold> Residual waveforms. <bold>(E)</bold> Detected outliers. <bold>(F)</bold> Decontaminated waveforms. The white dashed line indicates the nominal gate of Jason-2.</p>
</caption>
<graphic xlink:href="feart-09-748401-g002.tif"/>
</fig>
</sec>
<sec id="s3-2-2">
<title>Outlier Detection</title>
<p>The realigned waveforms are averaged and used as a reference for outlier detection. The reference waveform <inline-formula id="inf3">
<mml:math id="m6">
<mml:mrow>
<mml:msub>
<mml:mi>P</mml:mi>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>f</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> for each track can be defined as follows:<disp-formula id="e4">
<mml:math id="m7">
<mml:mrow>
<mml:mtable>
<mml:mtr>
<mml:mtd>
<mml:mrow>
<mml:msub>
<mml:mi mathvariant="italic">P</mml:mi>
<mml:mrow>
<mml:mi mathvariant="italic">ref</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mi mathvariant="italic">k</mml:mi>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mn>1</mml:mn>
<mml:mi mathvariant="italic">n</mml:mi>
</mml:mfrac>
<mml:munderover>
<mml:mstyle displaystyle="true">
<mml:mo>&#x2211;</mml:mo>
</mml:mstyle>
<mml:mrow>
<mml:mi mathvariant="bold-italic">i</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mi mathvariant="italic">n</mml:mi>
</mml:munderover>
<mml:mrow>
<mml:mover accent="true">
<mml:mi mathvariant="italic">P</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi mathvariant="italic">i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi mathvariant="italic">k</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:mtd>
</mml:mtr>
</mml:mtable>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
<label>(4)</label>
</disp-formula>
</p>
<p>Subtracting the reference waveform from the realigned waveforms, residuals can be derived as follows:<disp-formula id="e5">
<mml:math id="m8">
<mml:mrow>
<mml:mtable>
<mml:mtr>
<mml:mtd>
<mml:mrow>
<mml:mi mathvariant="bold">&#x394;</mml:mi>
<mml:mi mathvariant="bold-italic">P</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi mathvariant="bold-italic">i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi mathvariant="bold-italic">k</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x3d;</mml:mo>
<mml:mrow>
<mml:mo>&#x7c;</mml:mo>
<mml:mrow>
<mml:mrow>
<mml:mover accent="true">
<mml:mi mathvariant="bold-italic">P</mml:mi>
<mml:mo>&#xaf;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi mathvariant="bold-italic">i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi mathvariant="bold-italic">k</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mi mathvariant="bold-italic">P</mml:mi>
<mml:mrow>
<mml:mi mathvariant="bold-italic">ref</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mi mathvariant="bold-italic">k</mml:mi>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mo>&#x7c;</mml:mo>
</mml:mrow>
</mml:mrow>
</mml:mtd>
</mml:mtr>
</mml:mtable>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
<label>(5)</label>
</disp-formula>
</p>
<p>Based on the residuals, the root mean square (RMS) for each gate is calculated as follows:<disp-formula id="e6">
<mml:math id="m9">
<mml:mrow>
<mml:mtable>
<mml:mtr>
<mml:mtd>
<mml:mrow>
<mml:msub>
<mml:mi mathvariant="bold-italic">&#x3c3;</mml:mi>
<mml:mi mathvariant="bold-italic">k</mml:mi>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:msqrt>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msubsup>
<mml:mo>&#x2211;</mml:mo>
<mml:mrow>
<mml:mi mathvariant="bold-italic">i</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mi mathvariant="bold-italic">n</mml:mi>
</mml:msubsup>
<mml:mi mathvariant="bold">&#x394;</mml:mi>
<mml:msup>
<mml:mi mathvariant="bold-italic">P</mml:mi>
<mml:mn>2</mml:mn>
</mml:msup>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi mathvariant="bold-italic">i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi mathvariant="bold-italic">k</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
</mml:mrow>
<mml:mrow>
<mml:mi mathvariant="bold-italic">n</mml:mi>
<mml:mo>&#x2212;</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:msqrt>
</mml:mrow>
</mml:mtd>
</mml:mtr>
</mml:mtable>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
<label>(6)</label>
</disp-formula>
</p>
<p>Pixels in the echogram are tested using the gate-wise criterion given in <xref ref-type="disp-formula" rid="e7">Eq. 7</xref>. If the residual on a pixel exceeds twice RMS, this pixel will be regarded as an outlier and set to a null value.<disp-formula id="e7">
<mml:math id="m10">
<mml:mrow>
<mml:mtable>
<mml:mtr>
<mml:mtd>
<mml:mrow>
<mml:mi>&#x394;</mml:mi>
<mml:mi>P</mml:mi>
<mml:mrow>
<mml:mo>(</mml:mo>
<mml:mrow>
<mml:mi>i</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>k</mml:mi>
</mml:mrow>
<mml:mo>)</mml:mo>
</mml:mrow>
<mml:mo>&#x3e;</mml:mo>
<mml:mn>2</mml:mn>
<mml:msub>
<mml:mi>&#x3c3;</mml:mi>
<mml:mi>k</mml:mi>
</mml:msub>
</mml:mrow>
</mml:mtd>
</mml:mtr>
</mml:mtable>
<mml:mo>.</mml:mo>
</mml:mrow>
</mml:math>
<label>(7)</label>
</disp-formula>
</p>
</sec>
<sec id="s3-2-3">
<title>Amending Outlier</title>
<p>Outliers are necessary to be amended before retracking. This procedure is implemented by interpolation. In the previous work (<xref ref-type="bibr" rid="B31">Tseng et&#x20;al., 2014</xref>), a 2D linear interpolation from neighboring pixels was applied to amend outliers, which is actually a weighted mean method. Inevitably, interpolation might induce errors especially when neighboring samples are noisy. An alternative method that outliers are directly set to null value was proposed in order to avoid interpolation error (<xref ref-type="bibr" rid="B17">Huang et&#x20;al., 2017</xref>). However, null values potentially affect parameter estimation during retracking when they appear within or near the leading edge of a waveform. Therefore, interpolation is still performed in this study but using a different method. If <inline-formula id="inf4">
<mml:math id="m11">
<mml:mrow>
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</inline-formula> is identified as an outlier, it will be fixed using the mean value of its available neighbors or substituted directly by the value at the same gate in the reference waveform.</p>
<p>
<xref ref-type="fig" rid="F2">Figures 2D&#x2013;F</xref> illustrate the efficiency of algorithms for detecting and amending outliers. Two parabola signals at the thermal noise stage and anomalous peaks in the trailing edge area were successfully identified and&#x20;fixed.</p>
</sec>
<sec id="s3-2-4">
<title>Retracking Methods</title>
<p>Three retrackers were applied on the decontaminated waveforms. The three retrackers are 20% threshold retracker (TR20), 50% threshold retracker (TR50), and ICE1 retracker. For these retrackers, the retracked gate (also named as Epoch) can be computed using a uniform equation as follows:<disp-formula id="e8">
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</mml:mtr>
</mml:mtable>
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</mml:math>
<label>(8)</label>
</disp-formula>where <inline-formula id="inf5">
<mml:math id="m13">
<mml:mi>G</mml:mi>
</mml:math>
</inline-formula> is the gate number, the subscript <italic>i</italic> denotes the <italic>i</italic>th waveform, the superscript <italic>r</italic> represents the retracked gate, and <italic>k</italic> is the first gate with power exceeding the threshold value <inline-formula id="inf6">
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</inline-formula>. The threshold value for different retrackers can be determined using<disp-formula id="e9">
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<label>(9)</label>
</disp-formula>where <inline-formula id="inf7">
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</inline-formula> is the thermal noise of each waveform, <italic>th</italic> is the threshold which equals to 20%, 50%, and 30% for TR20, TR50, and ICE1, respectively. <italic>A<sub>i</sub>
</italic> <italic>is the maximum waveform amplitude for TR20 and TR50 or the OCOG (Offset Center of Gravity) amplitude fot ICE1.</italic>
</p>
<p>Since the emphasis of this study is to improve coastal SSHs, only the parameter for range correction was estimated in the retracking procedure. Finally, the retracking correction was derived by<disp-formula id="e10">
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<label>(10)</label>
</disp-formula>in which <inline-formula id="inf9">
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<mml:mi>G</mml:mi>
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</mml:msub>
</mml:mrow>
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</inline-formula> is the nominal gate number of the onboard tracking system. For comparison, raw waveforms were also retracked using the same retrackers. In this case, <inline-formula id="inf10">
<mml:math id="m20">
<mml:mi>P</mml:mi>
</mml:math>
</inline-formula> substitutes for <inline-formula id="inf11">
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</inline-formula> should be ignored in <xref ref-type="disp-formula" rid="e10">Eq.&#x20;10</xref>.</p>
</sec>
</sec>
</sec>
<sec sec-type="results|discussion" id="s4">
<title>Validation Results and Discussion</title>
<p>For the convenience of illustration, we used the abbreviation &#x201c;RW&#x201d; for the raw waveform, &#x201c;DW&#x201d; for the decontaminated waveform by the new method developed in this article, and &#x201c;MW&#x201d; for the modified waveform by the previous approach given by <xref ref-type="bibr" rid="B17">Huang et&#x20;al. (2017)</xref>. Three kinds of waveforms were retracked using TR20, TR50, and ICE1, respectively. Adding retrackers provided in SGDR, ALES, and PISTACH, 16 retrackers were involved for comparison in&#x20;total.</p>
<sec id="s4-1">
<title>Evaluating the Variability of Along-Track SSHs</title>
<p>The internal variability in each cycle of the along-track SSHs with respect to the geoid can reflect the performance of various retrackers. Standard deviations (SD) of the differences between the retracked SSHs and the geoid are frequently employed to evaluate the variability (<xref ref-type="bibr" rid="B18">Hwang et&#x20;al., 2006</xref>; <xref ref-type="bibr" rid="B24">Lee et&#x20;al., 2010</xref>). Meanwhile, data availability is an important consideration. Generally, a good retracker should be capable to retrieve more valid data with the smaller SD. We hence introduced the ratio of the percentage of valid measurements to SD as an evaluation index (<xref ref-type="bibr" rid="B35">Wang et&#x20;al., 2019</xref>), which is expressed as<disp-formula id="e11">
<mml:math id="m23">
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</mml:mtr>
</mml:mtable>
<mml:mo>,</mml:mo>
</mml:mrow>
</mml:math>
<label>(11)</label>
</disp-formula>where <inline-formula id="inf13">
<mml:math id="m24">
<mml:mrow>
<mml:msub>
<mml:mi>p</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the percentage of valid measurements after retracking and the calibration procedure (a 3<inline-formula id="inf14">
<mml:math id="m25">
<mml:mtext>&#x3c3;</mml:mtext>
</mml:math>
</inline-formula> de-outlier process), <inline-formula id="inf15">
<mml:math id="m26">
<mml:mrow>
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<mml:mi>&#x3c3;</mml:mi>
<mml:mi>i</mml:mi>
</mml:msub>
</mml:mrow>
</mml:math>
</inline-formula> is the SD (in meter) of the differences between the retracked SSHs and the geoid, and <inline-formula id="inf16">
<mml:math id="m27">
<mml:mrow>
<mml:mi>P</mml:mi>
<mml:mi>S</mml:mi>
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</mml:mrow>
</mml:math>
</inline-formula> is the ratio for each cycle. Statistical results of the tests in four regions are presented graphically in <xref ref-type="fig" rid="F3">Figure&#x20;3</xref>. The left panels show the SDs in all cycles for each retracker in 0&#x2013;10&#xa0;km zone. Corresponding PSRs are illustrated in the right panels. <xref ref-type="table" rid="T2">Table&#x20;2</xref> summarizes the mean values of these evaluation indices. The best performing retracker in each case is highlighted in&#x20;bold.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Performance comparison of various retrackers in terms of SD <bold>(left)</bold> and PSR <bold>(right)</bold> in 0&#x2013;10&#xa0;km zone for each case: <bold>(A)</bold>&#x2013;<bold>(B)</bold> Pass 119 near Los Angeles; <bold>(C)</bold>&#x2013;<bold>(D)</bold> Pass 228 near Cape May; <bold>(E)</bold>&#x2013;<bold>(F)</bold> Pass 61 near Funchal; <bold>(G)</bold>&#x2013;<bold>(H)</bold> Pass 242 near Ko Lak.</p>
</caption>
<graphic xlink:href="feart-09-748401-g003.tif"/>
</fig>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>Average indices of various retracked along-track SSHs in 0&#x2013;10&#xa0;km zone for each&#x20;case.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th rowspan="2" align="left">Product-retracker</th>
<th colspan="4" align="center">Pass 119</th>
<th colspan="4" align="center">Pass 228</th>
</tr>
<tr>
<th align="center">SD (cm)</th>
<th align="center">Valid data (%)</th>
<th align="center">PSR</th>
<th align="center">Invalid cycles</th>
<th align="center">SD (cm)</th>
<th align="center">Valid data (%)</th>
<th align="center">PSR</th>
<th align="center">Invalid cycles</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">SGDR-RAW</td>
<td align="center">95</td>
<td align="center">99</td>
<td align="center">1.0</td>
<td align="center">1</td>
<td align="center">193</td>
<td align="center">99</td>
<td align="center">0.5</td>
<td align="center">1</td>
</tr>
<tr>
<td align="left">SGDR-MLE4</td>
<td align="center">106</td>
<td align="center">78</td>
<td align="center">0.7</td>
<td align="center">2</td>
<td align="center">64</td>
<td align="center">85</td>
<td align="center">1.3</td>
<td align="center">3</td>
</tr>
<tr>
<td align="left">SGDR-MLE3</td>
<td align="center">102</td>
<td align="center">97</td>
<td align="center">1.0</td>
<td align="center">5</td>
<td align="center">57</td>
<td align="center">98</td>
<td align="center">1.7</td>
<td align="center">2</td>
</tr>
<tr>
<td align="left">SGDR-ICE</td>
<td align="center">21</td>
<td align="center">96</td>
<td align="center">4.7</td>
<td align="center">5</td>
<td align="center">15</td>
<td align="center">97</td>
<td align="center">6.6</td>
<td align="center">2</td>
</tr>
<tr>
<td align="left">ALES</td>
<td align="center">46</td>
<td align="center">95</td>
<td align="center">2.1</td>
<td align="center">5</td>
<td align="center">21</td>
<td align="center">95</td>
<td align="center">4.6</td>
<td align="center">4</td>
</tr>
<tr>
<td align="left">PISTACH-OCE3</td>
<td align="center">9</td>
<td align="center">42</td>
<td align="center">4.5</td>
<td align="center">14</td>
<td align="center">13</td>
<td align="center">59</td>
<td align="center">4.7</td>
<td align="center">5</td>
</tr>
<tr>
<td align="left">PISTACH-RED3</td>
<td align="center">63</td>
<td align="center">92</td>
<td align="center">1.5</td>
<td align="center">7</td>
<td align="center">33</td>
<td align="center">92</td>
<td align="center">2.8</td>
<td align="center">3</td>
</tr>
<tr>
<td align="left">PISTACH-ICE3</td>
<td align="center">34</td>
<td align="center">94</td>
<td align="center">2.8</td>
<td align="center">10</td>
<td align="center">16</td>
<td align="center">96</td>
<td align="center">6.1</td>
<td align="center">5</td>
</tr>
<tr>
<td align="left">RW-TR50</td>
<td align="center">230</td>
<td align="center">97</td>
<td align="center">0.4</td>
<td align="center">2</td>
<td align="center">143</td>
<td align="center">96</td>
<td align="center">0.7</td>
<td align="center">4</td>
</tr>
<tr>
<td align="left">RW-TR20</td>
<td align="center">28</td>
<td align="center">95</td>
<td align="center">3.3</td>
<td align="center">8</td>
<td align="center">16</td>
<td align="center">97</td>
<td align="center">6.0</td>
<td align="center">3</td>
</tr>
<tr>
<td align="left">MW-TR50</td>
<td align="center">94</td>
<td align="center">97</td>
<td align="center">1.0</td>
<td align="center">5</td>
<td align="center">94</td>
<td align="center">95</td>
<td align="center">1.0</td>
<td align="center">7</td>
</tr>
<tr>
<td align="left">MW-TR20</td>
<td align="center">18</td>
<td align="center">98</td>
<td align="center">5.5</td>
<td align="center">1</td>
<td align="center">17</td>
<td align="center">97</td>
<td align="center">5.7</td>
<td align="center">2</td>
</tr>
<tr>
<td align="left">MW-ICE1</td>
<td align="center">38</td>
<td align="center">97</td>
<td align="center">2.6</td>
<td align="center">1</td>
<td align="center">79</td>
<td align="center">98</td>
<td align="center">1.2</td>
<td align="center">1</td>
</tr>
<tr>
<td align="left">DW-TR50</td>
<td align="center">55</td>
<td align="center">95</td>
<td align="center">1.7</td>
<td align="center">7</td>
<td align="center">88</td>
<td align="center">95</td>
<td align="center">1.1</td>
<td align="center">7</td>
</tr>
<tr>
<td align="left">DW-TR20</td>
<td align="center">
<bold>12</bold>
</td>
<td align="center">
<bold>99</bold>
</td>
<td align="center">
<bold>8.2</bold>
</td>
<td align="center">
<bold>1</bold>
</td>
<td align="center">12</td>
<td align="center">98</td>
<td align="center">8.2</td>
<td align="center">2</td>
</tr>
<tr>
<td align="left">DW-ICE1</td>
<td align="center">12</td>
<td align="center">98</td>
<td align="center">8.1</td>
<td align="center">2</td>
<td align="center">
<bold>11</bold>
</td>
<td align="center">
<bold>98</bold>
</td>
<td align="center">
<bold>9.1</bold>
</td>
<td align="center">
<bold>2</bold>
</td>
</tr>
</tbody>
</table>
<table>
<thead valign="top">
<tr>
<th rowspan="2" align="left">Product-retracker</th>
<th colspan="4" align="center">Pass 061</th>
<th colspan="4" align="center">Pass 242</th>
</tr>
<tr>
<th align="center">SD (cm)</th>
<th align="center">Valid data (%)</th>
<th align="center">PSR</th>
<th align="center">Invalid cycles</th>
<th align="center">SD (cm)</th>
<th align="center">Valid data (%)</th>
<th align="center">PSR</th>
<th align="center">Invalid cycles</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">SGDR-RAW</td>
<td align="center">94</td>
<td align="center">100</td>
<td align="center">1.1</td>
<td align="center">0</td>
<td align="center">188</td>
<td align="center">100</td>
<td align="center">0.5</td>
<td align="center">0</td>
</tr>
<tr>
<td align="left">SGDR-MLE4</td>
<td align="center">18</td>
<td align="center">68</td>
<td align="center">3.8</td>
<td align="center">7</td>
<td align="center">126</td>
<td align="center">54</td>
<td align="center">0.4</td>
<td align="center">2</td>
</tr>
<tr>
<td align="left">SGDR-MLE3</td>
<td align="center">14</td>
<td align="center">96</td>
<td align="center">6.6</td>
<td align="center">7</td>
<td align="center">60</td>
<td align="center">97</td>
<td align="center">1.6</td>
<td align="center">4</td>
</tr>
<tr>
<td align="left">SGDR-ICE</td>
<td align="center">9</td>
<td align="center">97</td>
<td align="center">11.0</td>
<td align="center">6</td>
<td align="center">52</td>
<td align="center">95</td>
<td align="center">1.8</td>
<td align="center">7</td>
</tr>
<tr>
<td align="left">ALES</td>
<td align="center">11</td>
<td align="center">97</td>
<td align="center">9.0</td>
<td align="center">6</td>
<td align="center">22</td>
<td align="center">95</td>
<td align="center">4.3</td>
<td align="center">6</td>
</tr>
<tr>
<td align="left">PISTACH-OCE3</td>
<td align="center">12</td>
<td align="center">58</td>
<td align="center">4.7</td>
<td align="center">7</td>
<td align="center">10</td>
<td align="center">24</td>
<td align="center">2.4</td>
<td align="center">78</td>
</tr>
<tr>
<td align="left">PISTACH-RED3</td>
<td align="center">13</td>
<td align="center">97</td>
<td align="center">7.4</td>
<td align="center">6</td>
<td align="center">72</td>
<td align="center">84</td>
<td align="center">1.2</td>
<td align="center">9</td>
</tr>
<tr>
<td align="left">PISTACH-ICE3</td>
<td align="center">9</td>
<td align="center">99</td>
<td align="center">11.4</td>
<td align="center">1</td>
<td align="center">95</td>
<td align="center">96</td>
<td align="center">1.0</td>
<td align="center">3</td>
</tr>
<tr>
<td align="left">RW-TR50</td>
<td align="center">14</td>
<td align="center">98</td>
<td align="center">6.9</td>
<td align="center">4</td>
<td align="center">289</td>
<td align="center">99</td>
<td align="center">0.3</td>
<td align="center">0</td>
</tr>
<tr>
<td align="left">RW-TR20</td>
<td align="center">9</td>
<td align="center">99</td>
<td align="center">10.9</td>
<td align="center">1</td>
<td align="center">59</td>
<td align="center">95</td>
<td align="center">1.6</td>
<td align="center">8</td>
</tr>
<tr>
<td align="left">MW-TR50</td>
<td align="center">17</td>
<td align="center">98</td>
<td align="center">5.8</td>
<td align="center">4</td>
<td align="center">189</td>
<td align="center">99</td>
<td align="center">0.5</td>
<td align="center">0</td>
</tr>
<tr>
<td align="left">MW-TR20</td>
<td align="center">9</td>
<td align="center">99</td>
<td align="center">10.6</td>
<td align="center">1</td>
<td align="center">17</td>
<td align="center">94</td>
<td align="center">5.4</td>
<td align="center">12</td>
</tr>
<tr>
<td align="left">MW-ICE1</td>
<td align="center">16</td>
<td align="center">96</td>
<td align="center">6.0</td>
<td align="center">6</td>
<td align="center">32</td>
<td align="center">93</td>
<td align="center">2.9</td>
<td align="center">11</td>
</tr>
<tr>
<td align="left">DW-TR50</td>
<td align="center">12</td>
<td align="center">98</td>
<td align="center">8.2</td>
<td align="center">4</td>
<td align="center">172</td>
<td align="center">99</td>
<td align="center">0.6</td>
<td align="center">0</td>
</tr>
<tr>
<td align="left">DW-TR20</td>
<td align="center">
<bold>9</bold>
</td>
<td align="center">
<bold>100</bold>
</td>
<td align="center">
<bold>11.0</bold>
</td>
<td align="center">
<bold>0</bold>
</td>
<td align="center">15</td>
<td align="center">96</td>
<td align="center">6.3</td>
<td align="center">9</td>
</tr>
<tr>
<td align="left">DW-ICE1</td>
<td align="center">
<bold>9</bold>
</td>
<td align="center">
<bold>99</bold>
</td>
<td align="center">
<bold>11.3</bold>
</td>
<td align="center">
<bold>0</bold>
</td>
<td align="center">
<bold>14</bold>
</td>
<td align="center">
<bold>96</bold>
</td>
<td align="center">
<bold>6.7</bold>
</td>
<td align="center">
<bold>8</bold>
</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Obviously, the nonretracked (SGDR-RAW) SSHs are of poor quality, which is a common sense in coastal altimetry community. The Brown model-based retrackers, such as MLE4 and MLE3, do not perform well because they are developed for &#x201c;clean&#x201d; ocean waveforms. As observed in <xref ref-type="fig" rid="F3">Figure&#x20;3</xref>, the SDs of ICE retracker are much smaller than those of other retrackers in SGDR, and its corresponding PSRs are relatively high indicating good data availability in the coastal area. These results are consistent with those reported previous studies (<xref ref-type="bibr" rid="B23">Kuo et&#x20;al., 2012</xref>; <xref ref-type="bibr" rid="B31">Tseng et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B17">Huang et&#x20;al., 2017</xref>). Validation at Ko Lak tide gauge station performed by <xref ref-type="bibr" rid="B21">Idris et&#x20;al. (2020)</xref> also indicated that the ICE retracker is the best in the SGDR data. Compared with SGDR-ICE, PISTACH retrackers do not seem to bring significant improvement as expected. Although OCE3 achieves good accuracy, its percentage of valid measurements is very low. ICE3 and RED3 are also not as good as ICE1 in the four test areas. On average, ALES outperforms SGDR and PISTACH.</p>
<p>Threshold retrackers with different threshold levels are applied to RWs, MWs, and DWs separately. TR20 achieved much better results than TR50, implying that 20% threshold level is more suitable for retrieval of coastal data. It is reasonable because peaky noise extensively appearing in coastal waveforms may lead TR50 to overestimate the epoch. On the other hand, it can be seen in <xref ref-type="fig" rid="F3">Figure&#x20;3</xref> and <xref ref-type="table" rid="T2">Table&#x20;2</xref> that the performance of the same retrackers when applying to DWs is apparently superior to that when applying to RWs and MWs. Among 16 retrackers, furthermore, DW-TR20 and DW-ICE1 got the largest PSR values, as well as the smallest SDs in all cases. The results show a strike effect of our upgraded decontamination algorithm on refining the coastal&#x20;SSHs.</p>
<p>To explore how close to the shore valid SSH data retrieved by each retracker can reach to, we plotted along-track SSHs along with the EGM2008 geoid for all tracks used in this study and made a movie for each region for easy scanning. <xref ref-type="fig" rid="F4">Figure&#x20;4</xref> presents a plot as an example. Only the SSHs by seven retrackers with relatively high accuracy were illustrated in the plot, and arbitrary constants were added to each result for visual clarity. It shows that the DW-TR20 and DW_ICE1 retrackers can stably retrieve valid SSHs in the last 1&#xa0;km stripe, while the other retrackers become unstable in 0&#x2013;4&#xa0;km zone. It is notable that some biased values appear in the SSHs by MW-TR20 at about 6&#x2013;9&#xa0;km. It might be attributable to null values in waveforms set by the old version of the decontamination algorithm (<xref ref-type="bibr" rid="B17">Huang et&#x20;al., 2017</xref>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Along-track sea surface heights retrieved by various retrackers. Arbitrary constants were added to the result of each retracker for visual clarity.</p>
</caption>
<graphic xlink:href="feart-09-748401-g004.tif"/>
</fig>
</sec>
<sec id="s4-2">
<title>Validation With Gauge Data</title>
<p>Tide gauge provides independent sea level observations to validate altimeter-derived SSHs. In order to compare with <italic>in situ</italic> sea level, tidal corrections were excluded from the SSHs. Since tide gauge stations do not locate on the satellite track, geoid gradient corrections were applied to the SSHs. To avoid possible datum bias between altimeter measurements and gauge data, the mean value of each time series was subtracted. The RMSE value was calculated to show the mean error of retracked results compared with gauge data. Correlation coefficients (CCs) between altimeter-derived SSHs and gauge data were also computed. Statistical results within 0&#x2013;20&#xa0;km zone offshore for each retracker in the four test regions are demonstrated in <xref ref-type="fig" rid="F5">Figure&#x20;5</xref>. In each panel, bars at the bottom represent RMSE values and CCs are illustrated as waterfalls on the top. The color denotes along-track distance to the coastline, changing from red to blue corresponding to the increase in distance from 0 to 20&#xa0;km.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>RMSE and correlation coefficients (CCs) of retracked SSH time series within 20&#xa0;km offshore w.r.t. tide gauge data in each test area. <bold>(A)</bold> Los Angeles; <bold>(B)</bold> Cape May; <bold>(C)</bold> Funchal; <bold>(D)</bold> Ko Lak. The color of the bar changes from red to blue, indicating along-track distance to the coastline rising from 0 to 20&#xa0;km. The black dashed line denotes the accuracy level of 20&#xa0;cm.</p>
</caption>
<graphic xlink:href="feart-09-748401-g005.tif"/>
</fig>
<p>
<xref ref-type="fig" rid="F5">Figure&#x20;5</xref> visually depicts that the accuracy of the altimeter-derived SSHs decreases when approaching to the coast. In 10&#x2013;20&#xa0;km coastal zone, most retrackers perform well keeping the RMSE value below 20&#xa0;cm and CC higher than 0.9. However, within 10&#xa0;km, the RMSE increases rapidly and the correlation decreases correspondingly. Remarkably, two retrackers (DW-TR20 and DW-ICE1) developed in this study show very robust performance. The two retrackers can consistently yield small RMSEs in 0&#x2013;20&#xa0;km coastal zone. Overall, the performance of various retrackers revealed in <xref ref-type="fig" rid="F5">Figure&#x20;5</xref> agrees well with the evaluation results in <italic>Evaluating the Variability of Along-Track&#x20;SSHs</italic>.</p>
<p>
<xref ref-type="fig" rid="F6">Figure&#x20;6</xref> presents an example of SSH time series within 20&#xa0;km offshore near Ko Lak gauge station by several selected retrackers, which have relatively good performance in the coastal area. It is obvious that the results based on retracking denoised waveforms are better than those based on retracking raw waveforms. Comparing results of MW-ICE1 and DW-ICE1, we can conclude that the upgraded decontamination strategy made a great improvement. In this case, ALES achieved the smallest RMSE. The reason is due to the good efficacy of ALES in the zone beyond 7-8&#xa0;km offshore. Enough high accuracy measurements in the farther zone can help to reject crude measurements in the very near coastal area by the de-outlier process during constructing the SSH time series. However, the efficiency of ALES dramatically declines within 8&#xa0;km (<xref ref-type="bibr" rid="B17">Huang et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B36">Wang and Ichikawa, 2017</xref>), which can also be verified by results in <xref ref-type="fig" rid="F5">Figure&#x20;5</xref> and <xref ref-type="table" rid="T2">Table&#x20;2</xref>.</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>Coastal (0&#x2013;20&#xa0;km) SSH time series derived by selected retrackers near Ko Lak gauge station (Pass 242). Mean value of each time series is removed to avoid possible&#x20;bias.</p>
</caption>
<graphic xlink:href="feart-09-748401-g006.tif"/>
</fig>
<p>Focusing on the last several kilometers, we compared the performance of various retrackers within 4&#xa0;km. The improvement percentage (IMP) was computed to assess the improvement over the nonretracked SSHs (<xref ref-type="bibr" rid="B18">Hwang et&#x20;al., 2006</xref>). Statistical results are given in <xref ref-type="table" rid="T3">Table&#x20;3</xref>. We can observe that most retrackers yield large RMSE and small CC except DW-TR20 and DW-ICE1. On rare occasion, ALES has the minimum RMSE of 7&#xa0;cm in the third case (Pass 61), where the percentage of Brown and Brown-like waveforms is more than 95% (see <xref ref-type="table" rid="T1">Table&#x20;1</xref>). However, its performance is much poorer than that of DW-TR20 or DW-ICE1 in other cases. It implies that the ALES retracker has a good ability to handle with the Brown-like waveforms, but it is not good at processing the more complicated coastal waveforms. It makes sense because the ALES retracker is based on the Brown model (<xref ref-type="bibr" rid="B26">Passaro et&#x20;al., 2014</xref>). Evidently, the DW-TR20 and DW-ICE1 retrackers achieve the biggest improvement in accuracy in 0&#x2013;4&#xa0;km zone. Their IMP values are larger than 80% in all cases. It is indicated that our technique works well not only for the Brown-like waveforms but also for the extremely distorted waveforms.</p>
<table-wrap id="T3" position="float">
<label>TABLE 3</label>
<caption>
<p>Statistical results of retracked SSHs in 0&#x2013;4&#xa0;km zone offshore compared with gauge&#x20;data.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th rowspan="2" align="left">Retracker</th>
<th colspan="3" align="center">Pass 119</th>
<th colspan="3" align="center">Pass 228</th>
<th colspan="3" align="center">Pass 61</th>
<th colspan="3" align="center">Pass 242</th>
</tr>
<tr>
<th align="center">RMSE (cm)</th>
<th align="center">CC</th>
<th align="center">IMP (%)</th>
<th align="center">RMSE (cm)</th>
<th align="center">CC</th>
<th align="center">IMP (%)</th>
<th align="center">RMSE (cm)</th>
<th align="center">CC</th>
<th align="center">IMP (%)</th>
<th align="center">RMSE (cm)</th>
<th align="center">CC</th>
<th align="center">IMP (%)</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">SGDR-RAW</td>
<td align="char" char=".">138</td>
<td align="char" char=".">0.20</td>
<td align="center">&#x2013;</td>
<td align="char" char=".">96</td>
<td align="char" char=".">0.35</td>
<td align="center">&#x2013;</td>
<td align="char" char=".">62</td>
<td align="char" char=".">0.55</td>
<td align="center">&#x2013;</td>
<td align="char" char=".">76</td>
<td align="char" char=".">0.26</td>
<td align="center">&#x2013;</td>
</tr>
<tr>
<td align="left">SGDR-MLE4</td>
<td align="char" char=".">186</td>
<td align="char" char=".">0.13</td>
<td align="char" char=".">&#x2212;34.5</td>
<td align="char" char=".">97</td>
<td align="char" char=".">0.34</td>
<td align="char" char=".">&#x2212;0.7</td>
<td align="char" char=".">13</td>
<td align="char" char=".">0.97</td>
<td align="char" char=".">79.2</td>
<td align="char" char=".">150</td>
<td align="char" char=".">0.39</td>
<td align="char" char=".">&#x2212;96.8</td>
</tr>
<tr>
<td align="left">SGDR-MLE3</td>
<td align="char" char=".">95</td>
<td align="char" char=".">0.27</td>
<td align="char" char=".">31.5</td>
<td align="char" char=".">56</td>
<td align="char" char=".">0.62</td>
<td align="char" char=".">41.4</td>
<td align="char" char=".">11</td>
<td align="char" char=".">0.98</td>
<td align="char" char=".">83.0</td>
<td align="char" char=".">45</td>
<td align="char" char=".">0.76</td>
<td align="char" char=".">40.3</td>
</tr>
<tr>
<td align="left">SGDR-ICE</td>
<td align="char" char=".">34</td>
<td align="char" char=".">0.67</td>
<td align="char" char=".">75.4</td>
<td align="char" char=".">31</td>
<td align="char" char=".">0.81</td>
<td align="char" char=".">67.7</td>
<td align="char" char=".">9</td>
<td align="char" char=".">0.87</td>
<td align="char" char=".">85.7</td>
<td align="char" char=".">89</td>
<td align="char" char=".">0.58</td>
<td align="char" char=".">&#x2212;17.3</td>
</tr>
<tr>
<td align="left">ALES</td>
<td align="char" char=".">57</td>
<td align="char" char=".">0.57</td>
<td align="char" char=".">58.4</td>
<td align="char" char=".">32</td>
<td align="char" char=".">0.83</td>
<td align="char" char=".">67.2</td>
<td align="char" char=".">
<bold>7</bold>
</td>
<td align="char" char=".">
<bold>0.99</bold>
</td>
<td align="char" char=".">
<bold>88.4</bold>
</td>
<td align="char" char=".">28</td>
<td align="char" char=".">0.87</td>
<td align="char" char=".">62.5</td>
</tr>
<tr>
<td align="left">PISTACH-OCE3</td>
<td align="char" char=".">33</td>
<td align="char" char=".">0.81</td>
<td align="char" char=".">75.8</td>
<td align="char" char=".">29</td>
<td align="char" char=".">0.83</td>
<td align="char" char=".">70.1</td>
<td align="char" char=".">21</td>
<td align="char" char=".">0.92</td>
<td align="char" char=".">66.6</td>
<td align="char" char=".">18</td>
<td align="char" char=".">0.91</td>
<td align="char" char=".">76.7</td>
</tr>
<tr>
<td align="left">PISTACH-RED3</td>
<td align="char" char=".">80</td>
<td align="char" char=".">0.35</td>
<td align="char" char=".">42.2</td>
<td align="char" char=".">43</td>
<td align="char" char=".">0.66</td>
<td align="char" char=".">55.7</td>
<td align="char" char=".">15</td>
<td align="char" char=".">0.96</td>
<td align="char" char=".">76.4</td>
<td align="char" char=".">59</td>
<td align="char" char=".">0.68</td>
<td align="char" char=".">21.9</td>
</tr>
<tr>
<td align="left">PISTACH-ICE3</td>
<td align="char" char=".">51</td>
<td align="char" char=".">0.43</td>
<td align="char" char=".">63.1</td>
<td align="char" char=".">34</td>
<td align="char" char=".">0.79</td>
<td align="char" char=".">64.1</td>
<td align="char" char=".">14</td>
<td align="char" char=".">0.96</td>
<td align="char" char=".">77.1</td>
<td align="char" char=".">145</td>
<td align="char" char=".">0.48</td>
<td align="char" char=".">&#x2212;90.6</td>
</tr>
<tr>
<td align="left">RW-H50</td>
<td align="char" char=".">209</td>
<td align="char" char=".">&#x2212;0.01</td>
<td align="char" char=".">&#x2212;51.7</td>
<td align="char" char=".">207</td>
<td align="char" char=".">0.15</td>
<td align="char" char=".">&#x2212;116.1</td>
<td align="char" char=".">13</td>
<td align="char" char=".">0.94</td>
<td align="char" char=".">79.5</td>
<td align="char" char=".">219</td>
<td align="char" char=".">0.35</td>
<td align="char" char=".">&#x2212;188.0</td>
</tr>
<tr>
<td align="left">RW-TH20</td>
<td align="char" char=".">46</td>
<td align="char" char=".">0.59</td>
<td align="char" char=".">66.5</td>
<td align="char" char=".">31</td>
<td align="char" char=".">0.81</td>
<td align="char" char=".">67.6</td>
<td align="char" char=".">8</td>
<td align="char" char=".">0.99</td>
<td align="char" char=".">87.0</td>
<td align="char" char=".">101</td>
<td align="char" char=".">0.57</td>
<td align="char" char=".">&#x2212;32.4</td>
</tr>
<tr>
<td align="left">MW-TH50</td>
<td align="char" char=".">128</td>
<td align="char" char=".">0.21</td>
<td align="char" char=".">7.0</td>
<td align="char" char=".">140</td>
<td align="char" char=".">0.20</td>
<td align="char" char=".">&#x2212;46.0</td>
<td align="char" char=".">10</td>
<td align="char" char=".">0.95</td>
<td align="char" char=".">83.7</td>
<td align="char" char=".">166</td>
<td align="char" char=".">0.42</td>
<td align="char" char=".">&#x2212;118.9</td>
</tr>
<tr>
<td align="left">MW-TH20</td>
<td align="char" char=".">24</td>
<td align="char" char=".">0.88</td>
<td align="char" char=".">82.9</td>
<td align="char" char=".">30</td>
<td align="char" char=".">0.83</td>
<td align="char" char=".">68.5</td>
<td align="char" char=".">8</td>
<td align="char" char=".">0.98</td>
<td align="char" char=".">86.7</td>
<td align="char" char=".">20</td>
<td align="char" char=".">0.93</td>
<td align="char" char=".">73.9</td>
</tr>
<tr>
<td align="left">MW-ICE1</td>
<td align="char" char=".">38</td>
<td align="char" char=".">0.72</td>
<td align="char" char=".">72.4</td>
<td align="char" char=".">34</td>
<td align="char" char=".">0.78</td>
<td align="char" char=".">64.4</td>
<td align="char" char=".">12</td>
<td align="char" char=".">0.91</td>
<td align="char" char=".">80.3</td>
<td align="char" char=".">19</td>
<td align="char" char=".">0.90</td>
<td align="char" char=".">74.9</td>
</tr>
<tr>
<td align="left">DW-TH50</td>
<td align="char" char=".">84</td>
<td align="char" char=".">0.33</td>
<td align="char" char=".">39.2</td>
<td align="char" char=".">136</td>
<td align="char" char=".">0.20</td>
<td align="char" char=".">&#x2212;41.9</td>
<td align="char" char=".">9</td>
<td align="char" char=".">0.98</td>
<td align="char" char=".">85.6</td>
<td align="char" char=".">172</td>
<td align="char" char=".">0.46</td>
<td align="char" char=".">&#x2212;125.8</td>
</tr>
<tr>
<td align="left">DW-TH20</td>
<td align="char" char=".">16</td>
<td align="char" char=".">0.94</td>
<td align="char" char=".">88.5</td>
<td align="char" char=".">26</td>
<td align="char" char=".">0.89</td>
<td align="char" char=".">73.2</td>
<td align="char" char=".">8</td>
<td align="char" char=".">0.99</td>
<td align="char" char=".">87.2</td>
<td align="char" char=".">15</td>
<td align="char" char=".">0.96</td>
<td align="char" char=".">80.4</td>
</tr>
<tr>
<td align="left">DW-ICE1</td>
<td align="char" char=".">
<bold>15</bold>
</td>
<td align="char" char=".">
<bold>0.93</bold>
</td>
<td align="char" char=".">
<bold>89.3</bold>
</td>
<td align="char" char=".">
<bold>24</bold>
</td>
<td align="char" char=".">
<bold>0.90</bold>
</td>
<td align="char" char=".">
<bold>74.6</bold>
</td>
<td align="char" char=".">
<bold>8</bold>
</td>
<td align="char" char=".">
<bold>0.99</bold>
</td>
<td align="char" char=".">
<bold>87.3</bold>
</td>
<td align="char" char=".">
<bold>13</bold>
</td>
<td align="char" char=".">
<bold>0.97</bold>
</td>
<td align="char" char=".">
<bold>82.9</bold>
</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s4-3">
<title>Additional Comments on the Decontamination Technique</title>
<p>It is ideal to minimize noise interference during waveform retracking. Traditional subwaveform technique works well in many situations by extracting the clean leading edge according to partitioning waveforms (<xref ref-type="bibr" rid="B22">Guo et&#x20;al., 2006</xref>; <xref ref-type="bibr" rid="B15">Guo, et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B20">Idris and Deng, 2012</xref>; <xref ref-type="bibr" rid="B38">Yang, et&#x20;al., 2012a</xref>; <xref ref-type="bibr" rid="B26">Passaro et&#x20;al., 2014</xref>). However, this passive approach gets into trouble in near coast zone where waveforms are seriously distorted. The results in <xref ref-type="table" rid="T2">Table&#x20;2</xref> and <xref ref-type="table" rid="T3">Table&#x20;3</xref> illustrate that subwaveform-based retrackers such as ALES, RED3, and ICE3 are poor performing for the complicated waveforms. It can be attributed to the difficulty for determining the noise-free leading edge in this situation.</p>
<p>In another way, the decontamination technique which is developed to actively reduce noise in waveform has proved to be very effective for processing complex coastal waveforms (<xref ref-type="bibr" rid="B31">Tseng et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B17">Huang et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B36">Wang and Ichikawa, 2017</xref>). The core of this technique is how to locate polluted sampling gates and how to fix them. The strategy proposed in the current study is easy to implement and not time-consuming. By considering the issue of shifting of the leading edge and adopting gate-wise judging criteria, the new strategy improves the outlier detection procedure. This can be verified by comparing MW- and DW-retrackers. However, there is still no other sophisticated method for amending outliers except interpolation from neighbors. Furthermore, rounding off the offset derived by <xref ref-type="disp-formula" rid="e2">Eq. 2</xref> during realignment might induce alignment error in individual cases, which may influence subsequent denoising. Small jaggies might appear in the along-track SSHs in this case, e.g., at 18&#xa0;km in <xref ref-type="fig" rid="F4">Figure&#x20;4</xref>. This effect can be eliminated by smoothing or downsampling into 1&#xa0;Hz&#x20;data.</p>
</sec>
</sec>
<sec sec-type="conclusions" id="s5">
<title>Conclusions</title>
<p>In this article, we presented an upgraded strategy for decontaminating waveform, aiming to improve altimeter-derived coastal SSHs. The tests in four areas with four satellite passes validated the efficiency of the new strategy. Two retrackers (DW-TR20 and DW_ICE1) based on decontaminated waveforms show powerful performance to retrieve more and better coastal measurements, which will be beneficial to coastal applications such as coastal sea level change and geoid refining in oceanography, geodesy, and other fields.</p>
<p>Compared with the old decontamination strategy, one important improvement of the update method is the realignment of waveforms prior to decontamination. We proposed a novel alignment algorithm based on the raw SSH measurements. This improvement leads to a more reasonable reference waveform for the later outlier detection and remedy. Another improvement is that we adopted gate-based outlier judging criteria, which enable outlier detector to treat different parts of the waveform (e.g., thermal noise stage, leading edge, and trailing edge) with different criteria. These improvements make it possible to retrieve reliable SSHs in the last 1&#xa0;km to the&#x20;coast.</p>
<p>Although the decontamination strategy was validated only using Jason-2 data, it is appropriate to apply to the similar radar altimetry missions. In addition, only the threshold retracker and the ICE1 retracker were tested on the DWs in this work. It is worthy to explore the efficiency of other model-based retrackers such as MLE applied to the DWs. The combination of ALES and DW may be of great interest for future research.</p>
<p>It should be mentioned that the validation in this study focused on the new decontamination strategy. Refining coastal geophysical corrections such as wet troposphere correction and SSB was not considered. Different tidal effects between the tide gauge station and satellite nadirs were also not removed in the validation. Therefore, the accuracy of coastal SSHs can be further improved if these factors are taken into account.</p>
</sec>
</body>
<back>
<sec id="s6">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in&#x20;the article/Supplementary Material; further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="s7">
<title>Author Contributions</title>
<p>HW designed the study and wrote the first draft. ZH performed the experiments and drew the pictures. All authors analyzed the data and wrote the final&#x20;draft.</p>
</sec>
<sec id="s8">
<title>Funding</title>
<p>This work was sponsored by the National Natural Science Foundation of China (Grant No. 41974016), the Open Research Program of Key Laboratory of Marine Environmental Survey Technology and Application, Ministry of Natural Resources (Grant No. MESTA-2020-A004), the CRSRI Open Research Program (Grant No. CKWV2019773/KY), and the Natural Science Foundation of Jiangxi Province (Grant No. 20202BABL214055).</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s10">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors, and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<ack>
<p>We would like to acknowledge AVISO providing the Jason-2 SGDR data and the PISTACH data (<ext-link ext-link-type="uri" xlink:href="https://www.aviso.altimetry.fr/">https://www.aviso.altimetry.fr/</ext-link>), UHSLC providing the tide gauge data (<ext-link ext-link-type="uri" xlink:href="ftp://ftp.soest.hawaii.edu/uhslc/rqds">ftp://ftp.soest.hawaii.edu/uhslc/rqds</ext-link>), and DGFI-TUM providing the ALES data (<ext-link ext-link-type="uri" xlink:href="https://www.openadb.dgfi.tum.de">https://www.openadb.dgfi.tum.de</ext-link>).</p>
</ack>
<sec id="s11">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/feart.2021.748401/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/feart.2021.748401/full&#x23;supplementary-material</ext-link>
</p>
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<supplementary-material xlink:href="Video2.MP4" id="SM3" mimetype="application/MP4" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Video1.MP4" id="SM4" mimetype="application/MP4" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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