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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Comput. Sci.</journal-id>
<journal-title>Frontiers in Computer Science</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Comput. Sci.</abbrev-journal-title>
<issn pub-type="epub">2624-9898</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fcomp.2023.1252295</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Computer Science</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Deep learning-based classification of eye diseases using Convolutional Neural Network for OCT images</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name><surname>Elkholy</surname> <given-names>Mohamed</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x0002A;</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Marzouk</surname> <given-names>Marwa A.</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/2364375/overview"/>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Faculty of Information Systems and Computer Science, October 6 University</institution>, <addr-line>Giza</addr-line>, <country>Egypt</country></aff>
<aff id="aff2"><sup>2</sup><institution>Faculty of Computers and Artificial Intelligence, Information Technology Department, Matrouh University</institution>, <addr-line>Matrouh</addr-line>, <country>Egypt</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Pier Luigi Mazzeo, National Research Council (CNR), Italy</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Emanuele Frontoni, University of Macerata, Italy</p>
<p>Shaista Hussain, Agency for Science, Technology and Research (A<sup>&#x0002A;</sup>STAR), Singapore</p></fn>
<corresp id="c001">&#x0002A;Correspondence: Mohamed Elkholy <email>Mohamed.Elkholy.Cs&#x00040;o6u.edu.eg</email></corresp>
</author-notes>
<pub-date pub-type="epub">
<day>18</day>
<month>01</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>5</volume>
<elocation-id>1252295</elocation-id>
<history>
<date date-type="received">
<day>03</day>
<month>07</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>27</day>
<month>12</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2024 Elkholy and Marzouk.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Elkholy and Marzouk</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract>
<p>Deep learning shows promising results in extracting useful information from medical images. The proposed work applies a Convolutional Neural Network (CNN) on retinal images to extract features that allow early detection of ophthalmic diseases. Early disease diagnosis is critical to retinal treatment. Any damage that occurs to retinal tissues that cannot be recovered can result in permanent degradation or even complete loss of sight. The proposed deep-learning algorithm detects three different diseases from features extracted from Optical Coherence Tomography (OCT) images. The deep-learning algorithm uses CNN to classify OCT images into four categories. The four categories are Normal retina, Diabetic Macular Edema (DME), Choroidal Neovascular Membranes (CNM), and Age-related Macular Degeneration (AMD). The proposed work uses publicly available OCT retinal images as a dataset. The experimental results show significant enhancement in classification accuracy while detecting the features of the three listed diseases.</p></abstract>
<kwd-group>
<kwd>artificial intelligence</kwd>
<kwd>CNN</kwd>
<kwd>deep learning</kwd>
<kwd>OCT images</kwd>
<kwd>eye diseases</kwd>
<kwd>convolution layer</kwd>
</kwd-group>
<counts>
<fig-count count="12"/>
<table-count count="0"/>
<equation-count count="1"/>
<ref-count count="43"/>
<page-count count="12"/>
<word-count count="6947"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Computer Vision</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>1 Introduction</title>
<p>CNN, a type of deep learning neural network, has shown promising results in the field of image classification (Qin et al., <xref ref-type="bibr" rid="B29">2020</xref>). CNN has the capability of extracting underlying non-linear structures of image data which are widely found in different medical images (Bogunovi et al., <xref ref-type="bibr" rid="B6">2019</xref>). Hence, CNN is able to classify eye images that are considered complex and have multiple pixel dependencies throughout (Karthik and Mahadevappa, <xref ref-type="bibr" rid="B15">2023</xref>). Accurate classification leads to accurate prediction of different diseases (Madbouly et al., <xref ref-type="bibr" rid="B17">2020</xref>). Similar to the human brain, CNN contains several neurons that are arranged in layers (Ting et al., <xref ref-type="bibr" rid="B35">2018</xref>; Zhao et al., <xref ref-type="bibr" rid="B42">2020</xref>). The main three layers of CNN are the convolution layer, pooling layer, and fully connected layer (Ting et al., <xref ref-type="bibr" rid="B35">2018</xref>). The convolution layer is responsible for primary filtering (Kernel filtering) of the input data (Orlando et al., <xref ref-type="bibr" rid="B24">2018</xref>; Ting et al., <xref ref-type="bibr" rid="B35">2018</xref>; Karthik and Mahadevappa, <xref ref-type="bibr" rid="B15">2023</xref>). It takes the image as input and applies a kernel filter on it to give a convolved matrix as output (Chan et al., <xref ref-type="bibr" rid="B9">2017</xref>; Bogunovi et al., <xref ref-type="bibr" rid="B6">2019</xref>; Karthik and Mahadevappa, <xref ref-type="bibr" rid="B15">2023</xref>). The main benefit of the convolution layer is to extract the major image features from the input image (Mohamed and Mohamed, <xref ref-type="bibr" rid="B23">2021</xref>; Zobair et al., <xref ref-type="bibr" rid="B43">2022</xref>). The convolution layer can also include a padding layer to control the edges of the convoluted matrix (Wang et al., <xref ref-type="bibr" rid="B39">2023</xref>). The second layer is the pooling layer which applies a filter to reduce the size of the Convolved Feature, thus decreasing the computational power required to deal with it (Mohamed and Marzok, <xref ref-type="bibr" rid="B22">2022</xref>; Wang et al., <xref ref-type="bibr" rid="B39">2023</xref>). The third layer is the fully connected layer which is responsible for learning non-linear features of the output of the convolutional layer. The output of the convolution layer is the classification of the input images to a set of classes (Alqudah and Alqudah, <xref ref-type="bibr" rid="B3">2021</xref>; Tayal et al., <xref ref-type="bibr" rid="B33">2021</xref>).</p>
<p>The ability of CNN to extract non-linear features and semantic relations between neighbor pixels allows it to classify different diseases according to medical images (Mohamed and ElFatatry, <xref ref-type="bibr" rid="B20">2015</xref>; Ting et al., <xref ref-type="bibr" rid="B35">2018</xref>). In the field of ophthalmology, analyzing retinal images can predict eye diseases early (Tong et al., <xref ref-type="bibr" rid="B37">2020</xref>). Such early prediction is critical for better treatment and avoids damaging tissues that leads to permanent degradation of sight (Mohamed and ElFatatry, <xref ref-type="bibr" rid="B21">2019</xref>). The harmful impacts of eye diseases which are included in this work are discussed below.</p>
<p>In the human eye, the retina is responsible for sending images to the brain via the optic nerve (Ting et al., <xref ref-type="bibr" rid="B36">2019</xref>). At the center of the retina there is the macula, which is responsible for gathering image information (Bogunovi et al., <xref ref-type="bibr" rid="B6">2019</xref>; Ting et al., <xref ref-type="bibr" rid="B36">2019</xref>). The retina processes this information and converts it to a neural signal to be passed to the brain. Several diseases can affect macular health, leading to sight problems (Stor&#x000E5;s et al., <xref ref-type="bibr" rid="B32">2022</xref>). AMD, CNV, and DME are considered the major subjects of irreversible vision loss (Chan et al., <xref ref-type="bibr" rid="B9">2017</xref>; Mohamed and ElFatatry, <xref ref-type="bibr" rid="B21">2019</xref>; Ran and Cheung, <xref ref-type="bibr" rid="B30">2021</xref>). Such diseases lead to geographic atrophy that affects the retina (Awais et al., <xref ref-type="bibr" rid="B5">2017</xref>). The proposed work is motivated to use CNN to extract features from retinal images that predict the presence of these diseases.</p>
<p>According to WHO estimates, around 422 million people worldwide have diabetes (WHO, 2019). Diabetes is a set of metabolic illnesses characterized by high blood glucose levels (Le et al., <xref ref-type="bibr" rid="B16">2020</xref>; Stor&#x000E5;s et al., <xref ref-type="bibr" rid="B32">2022</xref>). Diabetic Macular Edema (DME) is a diabetic condition that can cause substantial damage to blood vessels in the retina, which can result in serious blindness (Akil et al., <xref ref-type="bibr" rid="B1">2021</xref>). Another frequent disorder that affects the center of vision is Age-related Macular Degeneration (AMD; Prabhakar et al., <xref ref-type="bibr" rid="B27">2021</xref>; Ran and Cheung, <xref ref-type="bibr" rid="B30">2021</xref>). People in their 50&#x00027;s and 60&#x00027;s are frequently the first to be affected. It does not result in complete blindness. It has been associated with smoking, hypertension, being overweight, and having a family history of AMD (Zhang et al., <xref ref-type="bibr" rid="B41">2020</xref>). The estimated number of persons infected with the illness was 196 million in 2020, predicted to rise to 288 million in 2040 (Pinazo-Dur&#x000E1;n et al., <xref ref-type="bibr" rid="B26">2016</xref>). Choroidal Neovascular Membranes (CNVM) are new, potentially harmful blood veins that form beneath the retina. The choroid is where these blood vessels develop. They are capable of breaking through the choroid-retina barrier (Pinazo-Dur&#x000E1;n et al., <xref ref-type="bibr" rid="B26">2016</xref>). They cause visual loss when they leak or bleed in the retina. CNVM may recur in 15&#x02013;30% of individuals, resulting in a hemorrhagic or serous macular degeneration with accompanying vision loss (Boldt et al., <xref ref-type="bibr" rid="B7">1990</xref>).</p>
<p>In order to avoid the danger of late diagnoses of the listed eye diseases, the proposed work designs and implements a deep-learning-based diagnostic system. The diagnostic system analyzes OCT images to detect common curable blinding retinal disorders (Le et al., <xref ref-type="bibr" rid="B16">2020</xref>). OCT is a commonly used integral imaging technique (Wang et al., <xref ref-type="bibr" rid="B38">2021</xref>). The main reason for using OCT is its ability to provide a cross-sectional retinal image with high resolution. Such high-resolution images of biological tissues allow CNN to extract features that indicate the presence of abnormal retina and thus allows early detection of eye diseases (Akil et al., <xref ref-type="bibr" rid="B1">2021</xref>; Ran and Cheung, <xref ref-type="bibr" rid="B30">2021</xref>). <xref ref-type="fig" rid="F1">Figure 1</xref> presents different OCT images of the three mentioned diseases and the normal retina. The OCT technique uses light wave&#x00027;s reflections to provide cross-sectional images of the macula and optic nerve as well as a clear image of blood vessels. The normal eye is characterized by a normal retinal shape without any fluid and normal blood vessels shape. AMD is characterized by retinal thickness, intraretinal fluid, and subretinal fluid. Fluid appears in OCT images as black holes on the white surface of the retina. DME images are characterized by the presence of interretinal fluid pockets, while CNVM images show abnormal sizes of blood vessels.</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p><bold>(A)</bold> Normal retina. <bold>(B)</bold> Drusen age-related macular degeneration (AMD). <bold>(C)</bold> Diabetic Macular Edema (DME). <bold>(D)</bold> Choroidal Neovascular Membranes (CNM).</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcomp-05-1252295-g0001.tif"/>
</fig>
<p>CNN transfer learning methodology is employed by using convolutional layers to train a neural network with a training set of data containing OCT images (Wang et al., <xref ref-type="bibr" rid="B38">2021</xref>). This work contributes to designing CNN layers to be able to extract features that indicate the presence of each of the three mentioned diseases from retina images. The proposed design overcomes the complexity and non-linearity of features composing retinal images as well as the semantics of neighbor pixel relationships. A manual analysis of the OCT images with specialists is time consuming and is subject to human errors.</p>
<p>This main objective of this work is to diagnose early three eye disorders: DME, CNM, and AMD. Such early and accurate detection of the mentioned diseases is important for several reasons. First, it can help ensure that patients receive the most effective treatment possible. Second, it can help to rule out potentially serious conditions such as blindness. Finally, making an accurate diagnosis can provide peace of mind for both patients and their families.</p>
<p>The rest of the paper is structured as follows: Section 2 discusses the related work. Section 3 provides information on the Efficient Perturbation Inference and Expandable Network (EPIE-Net), while Section 4 presents experiments. In Section 5, we summarize our work and go through possible future research areas.</p>
</sec>
<sec id="s2">
<title>2 Related work</title>
<p>Several studies have been conducted to develop expert systems that automate disease diagnoses processes (Hasan et al., <xref ref-type="bibr" rid="B14">2021</xref>). The objective of such systems is to obtain an accurate and fast response. In the area of medical images, CNN shows promising results. The complexity of retinal images attracted several researchers to develop machine learning systems to deal with them. In Waudby et al. (<xref ref-type="bibr" rid="B40">2011</xref>) and Peissig et al. (<xref ref-type="bibr" rid="B25">2012</xref>) researchers used written data to perform Natural Language Processing techniques to detect cataract disease without surgery. Electronic reports were used to describe the data associated with each patient including specific fields that can predict cataract disease. They concluded that eye diseases can be predicted using different Machine learning algorithms.</p>
<p>An early work to use OCT is presented in Ginsburg (<xref ref-type="bibr" rid="B13">2006</xref>). Authors used OCT imaging data for detecting intraocular lenses and refractive surgery. The authors used machine learning to identify specific eye diseases. After that, several machine learning solutions were employed for the detection of certain eye diseases such as age-related macular degeneration and automatic detection of diabetic retinopathy and automatic optical disc localization using image classification with support vector machines (Farooq and Sattar, <xref ref-type="bibr" rid="B11">2015</xref>).</p>
<p>In Al-Mohtaseb et al. (<xref ref-type="bibr" rid="B2">2021</xref>) a study was conducted to find the relationship between signs and diagnoses of dry eyes disease. The researchers employed Independent Component Analysis (ICA) and Pearson correlations. Each component of the ICA indicates the negligible remaining data. Hence, no steady relationship was found among the foremost regularly utilized signs and indications.</p>
<p>In Ting et al. (<xref ref-type="bibr" rid="B34">2017</xref>) designed a deep learning system diagnostic for detecting referable AMD; their study used Fovea-centered images without macula segmentation collected from 38,189 patients. However, few patients in their sample had referable AMD. Moreover, their CNN lacks a step for image processing that includes filters to extract deep features of OCT images.</p>
<p>In Burlina et al. (<xref ref-type="bibr" rid="B8">2017</xref>) reported high diagnostic accuracy by pre-segmenting the macula region prior to training and testing step. They used the National Institutes of Health AREDS data set that contains color fundus photographs that were captured from patients. The used images included stereo pairs taken from both eyes. Both AlexNet and OverFeat models for CNN were employed to classify the input images; the authors clarified that AlexNet showed better performance.</p>
<p>The concept of segmentation was also applied to blood vessels to allow early detection of eye diseases. In Moccia et al. (<xref ref-type="bibr" rid="B19">2018</xref>) authors used a machine-learning methods model that performed a vessel segmentation process to extract features that lead to the prediction of eye diseases. Their work adopted a segmentation algorithm to overcome the drawbacks of noise and low contrast when dealing with eye images.</p>
<p>In An et al. (<xref ref-type="bibr" rid="B4">2019</xref>) introduced a machine learning technique for detecting glaucoma. The authors used three-dimensional (OCT) data as well as color fundus images to detect the abnormal features of eye retina. A segmentation algorithm was used to generate thickness and deviation maps. Then (CNN) transfer learning was applied to a set of input images such as gray-scale optic disc fundus image, retinal nerve fiber layer, and retinal ganglion cell complex. CNN is trained using data augmentation. Then a random forest (RF) was trained by combining the results of each CNN model. Their model showed high accuracy to detect glaucomatous subjects based on features extracted from images.</p>
<p>Prasad et al. (<xref ref-type="bibr" rid="B28">2019</xref>) introduced a deep neural network model that is able to recognize features associated with diabetic retinopathy and glaucoma in the early stages. They aimed to advise the patients to consult an ophthalmologist to be sure of the presence of the mentioned eye disease. However, they did not focus on obtaining high accuracy for their work.</p>
<p>Thus, the related work show the need for a model that can efficiently predict different widely spread types of eye disease. Such a model should be able to use famous and commonly used retinal images devices such as OCT images.</p>
</sec>
<sec id="s3">
<title>3 Proposed methodology and CNN design</title>
<p>This section clarifies the design of the proposed CNN to detect the three mentioned types of diseases from CRT images. The proposed model starts with image processing for image enhancement. Then the enhanced images are fed to a CNN to apply deep learning methodology to predict and classify input images to four categories. Hence the output of the model is to classify the image as a normal retinal image or as a retinal image that suffers from DME, CNM, or Drusen. The diagnoses and classification criteria depend on the features extracted from OCT images. The proposed model is trained to classify each image that shows intraretinal fluid or subretinal fluid to be classified as an AMD image. If the fluid is in the form of several distributed pockets, the image is classified as DME. However, if the image shows larger sizes of blood vessels than the normal size the image is considered CNM. Otherwise, the image is considered a normal eye image. The training data set focuses on the previous features to classify the retinal images. The proposed model contributes to predicting the three most common eye diseases in only one model with higher accuracy and performance to other models up to now. Such a higher performance is achieved with enhancement of the image before connecting images to the implemented CNN. Image enhancement techniques were based on two basic concepts. The first is the characteristics of OCT images which depend on light reflection. The second is the features that should be abstracted to predict eye disease are blood vessel edges and fluid shape. The model also enhances performance and accuracy by performing fine tuning and optimization to the model output.</p>
<sec>
<title>3.1 Image processing</title>
<p>Image processing is used to improve or extract useful information from an input image (Awais et al., <xref ref-type="bibr" rid="B5">2017</xref>). It is a sort of signal processing in which the input is an image and the output might be an image or image characteristics/features.</p>
<sec>
<title>3.1.1 Image enhancement</title>
<p>OCT images are complex images that contain semantic relationships between neighbor pixels (Prabhakar et al., <xref ref-type="bibr" rid="B27">2021</xref>). Features that help in predicting eye diseases from OCT images depend on the shape of blood vessels and the amount of abnormal fluid surrounding the retina. In order to enhance OCT images and increase the weight of required features in OCT, two successive processes are applied to each image. The proposed model starts by highlighting the important hidden details in an image such as contrast and brightness adjustment. OpenCV and PIL were used to enhance the brightness and contrast of OCT images; however Open CV showed better brightness. The proposed model uses both point operator and neighborhood operators and applied higher weight to the neighbor pixels in determining the value of each pixel. <xref ref-type="fig" rid="F2">Figures 2</xref>&#x02013;<xref ref-type="fig" rid="F4">4</xref> illustrate the enhancement of OCT images using the first step of the proposed preprocessing. Such enhancement allows using the enhanced images to predict the three different mentioned diseases using the proposed model.</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>Brightness using PIL.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcomp-05-1252295-g0002.tif"/>
</fig>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p>Contrast using PIL.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcomp-05-1252295-g0003.tif"/>
</fig>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p>Brightness and contrast using OpenCV.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcomp-05-1252295-g0004.tif"/>
</fig>
<p>The second process applies enhanced Multiscale Retinex Algorithm (MRA). Each pixel in the image p (x, y) is combined with the average weight of the surrounding pixels to remove the illumination component. The dynamic range of each fluctuating pixel can be compressed via image weighted average transformation. The weighted transformation also offers effective extinction of the dark pixels. Thus, it is suitable to be applied to OCT images that depend mainly on light reflection. Hence, the weighted average can select the optimal pixel in the image, so as to enhance the weight of required features of OCT images.</p>
</sec>
<sec>
<title>3.1.2 Image restoration</title>
<p>This step deals with improving the appearance of OCT images by removing noise or blur from images. There are different types of smoothing such as Gaussian Blur, blur, Median blur, and Bilateral blurring. Noise can be Gaussian Noise (which arose due to different lighting conditions). This work employed Gaussian Blur to apply a simple weighted mean to OCT images. OCT images are characterized by significant non-linear relationships between pixels. Such relationships are important in accurate determination of the eye disease. Neighborhood pixels that are closer to the core pixel provide greater weight to the central pixel average. OpenCv was used to apply a Gaussian Blur algorithm to improve the quality of OCT images, especially for blood vessels. Comparing OCT images before and after applying the Gaussian Blur filter offers enhancement after applying the filter. The edges of blood vessels and fluid holes become clearer and free of noise. <xref ref-type="fig" rid="F5">Figure 5</xref> illustrates OCT image enhancement after applying Gaussian Blur.</p>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p><bold>(A)</bold> Before applying Gaussian Blur. <bold>(B)</bold> After applying Gaussian Blur.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcomp-05-1252295-g0005.tif"/>
</fig>
</sec>
</sec>
<sec>
<title>3.2 Convolutional neural network</title>
<p>The proposed work employs CNN as a deep learning technique to classify OCT images to four categories. The first three categories include the mentioned diseases: DME, CNM, and Drusen. The fourth category represents the normal eye images. The adopted layers are listed below.</p>
<list list-type="bullet">
<list-item><p>Convolutional Layer.</p></list-item>
<list-item><p>ReLU Layer.</p></list-item>
<list-item><p>Pooling Layer.</p></list-item>
<list-item><p>Flatten Layer.</p></list-item>
<list-item><p>Softmax Layer.</p></list-item>
</list>
<sec>
<title>3.2.1 Convolutional layer</title>
<p>The convolutional layer is the core building block of a CNN. It is the first layer that processes defined filters on the input data. In the proposed work, the input images have three dimensions which are height, width, and depth corresponding to RGB in an image. Moving across the image&#x00027;s receptive fields, a feature detector (also known as a kernel filter) is utilized to determine whether the feature is there. By examining the image&#x00027;s size, the kernel size is selected. The used filter is &#x0003E;3<sup>&#x0002A;</sup>3 if the image size is larger than 128<sup>&#x0002A;</sup>128. When an image is &#x0003C; 128 x 128, 1<sup>&#x0002A;</sup>1 or 3<sup>&#x0002A;</sup>3 filters are used. A two-dimensional (2-D) array of weights acting as the feature detector represents a portion of the image. The size of the filter is commonly a 3x3 matrix; however, it can be other sizes. The filter is then applied to an area of the image, and the dot product between the input pixels and the filter is computed. After that, the dot product is loaded into an output array. The filter then moves by a stride and repeats the operation until the kernel has swept across the whole image. As seen in <xref ref-type="fig" rid="F6">Figure 6</xref>, the final output of the sequence of dot products from the input and the filter is known as a feature map.</p>
<fig id="F6" position="float">
<label>Figure 6</label>
<caption><p>Original image and image after the convolutional layer.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcomp-05-1252295-g0006.tif"/>
</fig>
</sec>
<sec>
<title>3.2.2 ReLU function</title>
<p>This work uses ReLU (Rectified Linear activation function) as a non-linear function to change any negative value in the feature map matrix to zero without any changes to positive values. It is Mathematically Expressed as:</p>
<disp-formula id="E1"><label>(1)</label><mml:math id="M1"><mml:mtable class="eqnarray" columnalign="left"><mml:mtr><mml:mtd><mml:mi>F</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mi>x</mml:mi></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow><mml:mo>=</mml:mo><mml:mi>m</mml:mi><mml:mi>a</mml:mi><mml:mi>x</mml:mi><mml:mrow><mml:mo stretchy="false">(</mml:mo><mml:mrow><mml:mn>0</mml:mn><mml:mo>,</mml:mo><mml:mi>x</mml:mi></mml:mrow><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
<p>For values less than (negative values) or equal to zero, 0.0 is returned, and the positive value is returned in its original form. After plotting ReLU, it seems to be a linear function at first glance. However, as it is a non-linear function, the training data must be used to help it recognize and learn complex relationships. For positive values, it behaves as a linear function; for negative values, it behaves as a non-linear activation function. The output of ReLU function is represented in <xref ref-type="fig" rid="F7">Figure 7</xref>.</p>
<fig id="F7" position="float">
<label>Figure 7</label>
<caption><p>Original image and image after the convolutional layer and ReLU.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcomp-05-1252295-g0007.tif"/>
</fig>
</sec>
<sec>
<title>3.2.3 Pooling layer</title>
<p>The pooling layer is used to reduce the size of the feature maps. A filter size of 2x2 is used to decrease the elements of the featured matrix to its fourth. As a result, the number of parameters to learn in the CNN is significantly decreased. Hence, a significant enhancement to performance is achieved. The output of the pooling layer is the summary of characteristics in the featured map, leading to simplicity in the fully connected layers. Pooling is classified into three types: maximum pooling, minimum pooling, and average pooling. The suggested approach utilities a Max pooling layer because Max pooling selects the biggest element from the feature map region covered by the filter. As a consequence, the max-pooling layer&#x00027;s output would be a feature map containing the most significant properties of the preceding feature map obtained after applying the convolutional layer and the ReLU layer. Hence, a significant reduction in the number of parameters in the network is achieved without affecting the important features of the OCT images.</p>
</sec>
<sec>
<title>3.2.4 Flatten layer</title>
<p>To pass the featured map after applying max pooling to the fully connected layer it should be converted to a single dimension array. In order to create a single long continuous linear vector, the flattening method is utilized for combining all of the 2-Dimensional arrays obtained from pooling feature maps. The fully connected layer obtains the flattened matrix as input to classify the image.</p>
</sec>
<sec>
<title>3.2.5 Softmax layer</title>
<p>In order to deal with multiclass classification problems (four categories of eye images) the proposed work uses softmax layer. Softmax is used as an activation function that changes the weight of each output node to a probability vector. Thus, each node in the output layer is given a probability value to be closer to one of the four mentioned categories. The neural network&#x00027;s prediction is the node with the highest value.</p>
</sec>
<sec>
<title>3.2.6 Optimization</title>
<p>Back propagation and forward propagation are both used to train the CNN. For each iteration the loss function is calculated. The loss function is the difference between the actual and predicted output. Thus, backward propagation is used to decrease this error using an optimizer. The optimizer function updates the weights of CNN nodes to decrease the error. It also changes the learning rate after every iteration by calculating the loss function. The neural network may not learn well if the learning rate is too fast and vice versa. Hence, the proposed work uses Adam Optimizer to optimize learning speed.</p>
</sec>
<sec>
<title>3.2.7 Transfer learning</title>
<p>Transfer learning involves using an already trained model as a starting point for another model (Elkholy and Elfatatry, <xref ref-type="bibr" rid="B10">2018</xref>). The proposed work uses transfer learning to speed up training and improve the performance of the deep learning model. Reusing the parameters and weights that a model has learned significantly saves time in implementation and training (Ghosh et al., <xref ref-type="bibr" rid="B12">2023</xref>). The proposed work uses Keras application in which it is possible to instantly apply the required model and all of its previously trained weights.</p>
<p>The proposed work adopts VGGA16 fully connected layers. OCT images can be handled by VGGA16 because it combines numerous smaller layers rather than a single large layer. As a result, additional non-linear activation layers accompany the convolution layers, which improve the decision functions and speeds up convergence (<xref ref-type="fig" rid="F8">Figure 8</xref>).</p>
<fig id="F8" position="float">
<label>Figure 8</label>
<caption><p>Traditional ML and transfer learning.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcomp-05-1252295-g0008.tif"/>
</fig>
</sec>
<sec>
<title>3.2.8 Fine tuning</title>
<p>Fine tuning is used to improve the model&#x00027;s efficiency by linking the output of one fully connected layer as an input to another fully connected layer (Sarki et al., <xref ref-type="bibr" rid="B31">2020</xref>; Marzuok and Elkholy, <xref ref-type="bibr" rid="B18">2023</xref>). First, from the pre-trained CNN (the &#x0201C;head&#x0201D; of the network where the class label predictions are returned), the final set of fully connected layers is severed. The head is then changed out for a new set of linked layers. The weights of the layers below the head cannot be altered since they are all frozen. Then, the network has been trained with a small learning rate so that the newly learnt convolutional layers can learn patterns from the prior learned convolutional layers. Pre-trained networks may be used to distinguish classes that they were not initially trained on by applying fine-tuning. Compared to transfer learning by feature extraction, this approach can provide results with better accuracy.</p>
</sec>
</sec>
</sec>
<sec id="s4">
<title>4 Implementation</title>
<p>The proposed work depends on CNN to implement a deep learning model to classify eye diseases from OCT images. The used data is collected from publicly available data sets for OCT images. The system block diagram is presented in <xref ref-type="fig" rid="F9">Figure 9</xref>. The proposed model was implemented using Keras, a high-level API of &#x0201C;Tensor Flow&#x0201D; platform on a PC with Intel core i7 CPU 12700H 14 cores and 32 GB RAM and NVIDIA GTX 1070 GPU.</p>
<fig id="F9" position="float">
<label>Figure 9</label>
<caption><p>Block diagram for system design.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcomp-05-1252295-g0009.tif"/>
</fig>
<sec>
<title>4.1 The dataset</title>
<p>The data used in the proposed work is collected from a publicly available dataset. Used data is collected from Kaggle, which is a large data science community supported with powerful tools to help researchers and developers. Used data is available at the following link and can be accessed for free <ext-link ext-link-type="uri" xlink:href="https://www.kaggle.com/datasets/paultimothymooney/kermany2018">https://www.kaggle.com/datasets/paultimothymooney/kermany2018</ext-link>. The used dataset consists of OCT images for the normal retina and three different retinal diseases. OCT provides high-resolution cross sections of human retinas. Each image was graded by ophthalmologists. OCT images are considered high quality images as the capturing process depends on light reflection. The captured images are not biased by any way to any one of the three disease categories labeled with the diagnosis. Images were then split into four directories: CNV, DME, DRUSEN, and normal.</p>
<p>The total number of images is 35,468. The images are divided as follows:</p>
<list list-type="bullet">
<list-item><p>8,867 images for the normal retina along with preserved foveal contour and no retinal fluid/edema (NORMAL).</p></list-item>
<list-item><p>8,867 images for choroidal neovascularization (CNV) with neovascular membrane and accompanied sub-retinal fluid.</p></list-item>
<list-item><p>8,867 images for the Diabetic Macular Edema in addition to retinal-thickening-associated intra-retinal fluid (DME).</p></list-item>
<list-item><p>8,867 images for numerous drusen present in the early stages of age-related macular degeneration (DRUSEN).</p></list-item>
</list>
<p>The criteria behind choosing the same number of images for each category are to prevent the model being biased toward any of the four categories. Image sets then were further split into training and test sets. From each class, 250 test images were taken, making 1,000 test images in total, while the rest of the images were for training.</p>
</sec>
<sec>
<title>4.2 Implementation environment</title>
<p>The proposed model was implemented using Keras, which is a deep learning API written in Python. Keras provides high performance and scalability for deep learning development. It also provides essential building blocks for developing and shipping CNN models. The required functionalities of CNN implementation were imported as predefined libraries to improve code productivity. Listing 1 shows the set of imported libraries.</p>
<list list-type="simple">
<list-item><p>&#x0201C;source&#x0201D;: [</p></list-item>
<list-item><p>&#x0201C;import os\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from glob import glob\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;import pandas as pd\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;import numpy as np\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from numpy import expand_dims\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;import matplotlib.pyplot as plt\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;import matplotlib.image as mpimg\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;import seaborn as sn\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from skimage.transform import resize\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from skimage.color import gray2rgb\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from sklearn.metrics import classification_report, confusion_matrix\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from IPython.display import SVG\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;import keract\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from tensorflow import keras\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from tensorflow.keras import applications, optimizers\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from tensorflow.keras.models import Model, Sequential, load_model\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from tensorflow.keras.preprocessing.image import ImageDataGenerator, load_img, img_to_array\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from tensorflow.keras.layers import Dense, Flatten, Dropout\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from tensorflow.keras.applications.vgg16 import VGG16, preprocess_input\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from tensorflow.keras.utils import to_categorical, model_to_dot, plot_model\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from tensorflow.keras.callbacks import ModelCheckpoint, EarlyStopping, CSVLogger, ReduceLROnPlateau\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from keras.applications.vgg16 import preprocess_input\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from keras.applications.vgg16 import decode_predictions\n,&#x0201D;</p></list-item>
<list-item><p>&#x0201C;from keras.applications.vgg16 import VGG16\n&#x0201D;</p></list-item>
<list-item><p>]</p></list-item>
</list>
<p>Listing 1: Imported libraries.</p>
<p>After importing the libraries, the data are loaded to the model. The important libraries needed for implementation are imported, and the VGG16 pre-trained model is named. The flatten layer and Adam optimizers are also implemented; listing 2 shows the implementation of the flatten layer. After all functionalities are implemented, the model training is started.</p>
<list list-type="simple">
<list-item><p>X=Flatten() (vgg.out)</p></list-item>
<list-item><p>predection= Dense(len(folder), activation = &#x02018;softnax&#x00027;)(x)</p></list-item>
<list-item><p>model = Model (input = vgg.input, output= prediction)</p></list-item>
<list-item><p>model.summary()</p></list-item>
</list>
<p>Listing 2: Implementation of the flatten layer.</p>
</sec>
<sec>
<title>4.3 Experimental results</title>
<p>After training the proposed model it was tested using the testing dataset. The first results showed that the model suffers from an under-fitting problem. Hence, to overcome this problem the duration of training was increased. After that, the model showed high efficiency in predicting the four types of images. The model accuracy was about 94% and, after fine tuning, it approaches 97%. VGG16 showed higher accuracy as is more suitable to extracting non-linear features and neighbor relations between pixels in OCT images. The proposed model was tested using different OCT images and showed the same high accuracy for different datasets. <xref ref-type="fig" rid="F10">Figures 10</xref>, <xref ref-type="fig" rid="F11">11</xref> represent the accuracy before and after fine tuning. Such high accuracy was achieved by applying the suitable preprocessing of images regarding the characteristics of OCT images and the features required to be abstracted from it. In addition, the model performs fine tuning and optimization to get more accurate results.</p>
<fig id="F10" position="float">
<label>Figure 10</label>
<caption><p>Accuracy of detecting the four classes before fine tuning.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcomp-05-1252295-g0010.tif"/>
</fig>
<fig id="F11" position="float">
<label>Figure 11</label>
<caption><p>Accuracy of detecting the four classes after fine tuning.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcomp-05-1252295-g0011.tif"/>
</fig>
</sec>
<sec>
<title>4.4 Comparative analysis</title>
<p>To get an accurate evaluation of our model for eye disease classification, a comparative analysis was done with recent research in the area of eye disease detection. Several studies focused on detecting one or two types of eye diseases. Other studies needed few medical examinations before producing the final results. However, we attempted to get a meaningful comparison with three other studies.</p>
<p>The work done in An et al. (<xref ref-type="bibr" rid="B4">2019</xref>) in which CNN was used to detect only Glaucoma showed promising results. The authors of the research used VGG-19 as a transfer learning model without using optimizer function and fine tuning. Their result for detecting Glaucoma was 0.953 for OCT images. In Prasad et al. (<xref ref-type="bibr" rid="B28">2019</xref>) multiple eye disease detection using a deep neural network was demonstrated. The authors created a system that could detect Glaucoma and Diabetic Retinopathy at an early stage. Their results showed 80% accuracy by using CNN, however, their paper did not mention the data sample. In Burlina et al. (<xref ref-type="bibr" rid="B8">2017</xref>) authors presented a model to detect two different types of AMD. They used deep Convolutional Neural Networks in their work and got results with 92% accuracy. According to this comparison, we claim that the proposed model achieved higher accuracy than several recent models in the literature.</p>
<p>The performance of the proposed model to discriminate images related to the three mentioned diseases from normal eye images is evaluated using a Receiver Operating Characteristic (ROC) curve. For each disease the true positive, true negative, false positive, and false negative are calculated. In <xref ref-type="fig" rid="F12">Figure 12</xref>, the (ROC) curve represents the relation between sensitivity and (1- specificity). Sensitivity is calculated as the true positive fraction while (1- specificity) is calculated as false positive fraction. The area under the curve shows the high performance of the model in classifying OCT images related to different eye diseases.</p>
<fig id="F12" position="float">
<label>Figure 12</label>
<caption><p><bold>(A)</bold> ROC for AMD disease detection. <bold>(B)</bold> ROC for DME disease detection. <bold>(C)</bold> ROC for CNV disease detection.</p></caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcomp-05-1252295-g0012.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="conclusions" id="s5">
<title>5 Conclusion</title>
<p>The proposed work shows the ability of CNN to predict different eye diseases early using OCT images with an accuracy that reached 97%. The experimental results showed the higher accuracy of the proposed model over other models listed in the literature. The model classifies retinal OCT images into four classes: normal eye retina, DME, NVM, and AMD. Early eye disease detection prevents dangerous effects of eye diseases that may lead to complete loss of sight. The deep-learning model was implemented using Python libraries including Keras, OpenCV, NumPy, and matplotlib. The proposed model has the potential to be evolved by adding new diagnoses and new symptoms.</p>
<p>Future work will focus on adding new diseases and their symptoms to the model. We will also try to deeply classify the infection of mentioned diseases. The classification will include elementary and urgent cases. Urgent cases are cases that require urgent treatments or surgeries.</p>
</sec>
<sec sec-type="data-availability" id="s6">
<title>Data availability statement</title>
<p>Publicly available datasets were analyzed in this study. This data can be found at: <ext-link ext-link-type="uri" xlink:href="https://www.kaggle.com/datasets/paultimothymooney/kermany2018">https://www.kaggle.com/datasets/paultimothymooney/kermany2018</ext-link>.</p>
</sec>
<sec sec-type="author-contributions" id="s7">
<title>Author contributions</title>
<p>All authors have participated in (a) conception and design or analysis and interpretation of the data, (b) drafting the article or revising it critically for important intellectual content, and (c) approval of the final version.</p>
</sec>
</body>
<back>
<sec sec-type="COI-statement" id="conf1">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s8">
<title>Publisher&#x00027;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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</back>
</article>
