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<journal-id journal-id-type="publisher-id">Front. Chem.</journal-id>
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<journal-title>Frontiers in Chemistry</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Chem.</abbrev-journal-title>
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<article-id pub-id-type="publisher-id">1739085</article-id>
<article-id pub-id-type="doi">10.3389/fchem.2026.1739085</article-id>
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<subj-group subj-group-type="heading">
<subject>Original Research</subject>
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<title-group>
<article-title>Inflammatory and neurotoxic risk of atorvastatin in diabetic peripheral neuropathy: TNF-centered evidence integrating network toxicology, scRNA-Seq, and cell validation</article-title>
<alt-title alt-title-type="left-running-head">Yang et al.</alt-title>
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<contrib contrib-type="author" equal-contrib="yes">
<name>
<surname>Yang</surname>
<given-names>Hanbing</given-names>
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<xref ref-type="aff" rid="aff1">
<sup>1</sup>
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<sup>&#x2020;</sup>
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<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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<sup>3</sup>
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<sup>&#x2020;</sup>
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<sup>3</sup>
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<sup>3</sup>
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<sup>3</sup>
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<aff id="aff1">
<label>1</label>
<institution>Renshou County People&#x2019;s Hospital</institution>, <city>Meishan</city>, <state>Sichuan</state>, <country country="CN">China</country>
</aff>
<aff id="aff2">
<label>2</label>
<institution>Department of Neurology, The Affiliated Hospital, Southwest Medical University</institution>, <city>Luzhou</city>, <state>Sichuan</state>, <country country="CN">China</country>
</aff>
<aff id="aff3">
<label>3</label>
<institution>Department of Clinical Medicine, School of Clinical Medicine, Southwest Medical University</institution>, <city>Luzhou</city>, <state>Sichuan</state>, <country country="CN">China</country>
</aff>
<aff id="aff4">
<label>4</label>
<institution>The Affiliated Stomatological Hospital, Southwest Medical University</institution>, <city>Luzhou</city>, <state>Sichuan</state>, <country country="CN">China</country>
</aff>
<author-notes>
<corresp id="c001">
<label>&#x2a;</label>Correspondence: Xingxia Wang, <email xlink:href="mailto:xingxiawang888@swmu.edu.cn">xingxiawang888@swmu.edu.cn</email>
</corresp>
<fn fn-type="equal" id="fn001">
<label>&#x2020;</label>
<p>These authors have contributed equally to this work</p>
</fn>
</author-notes>
<pub-date publication-format="electronic" date-type="pub" iso-8601-date="2026-02-18">
<day>18</day>
<month>02</month>
<year>2026</year>
</pub-date>
<pub-date publication-format="electronic" date-type="collection">
<year>2026</year>
</pub-date>
<volume>14</volume>
<elocation-id>1739085</elocation-id>
<history>
<date date-type="received">
<day>04</day>
<month>11</month>
<year>2025</year>
</date>
<date date-type="rev-recd">
<day>15</day>
<month>01</month>
<year>2026</year>
</date>
<date date-type="accepted">
<day>22</day>
<month>01</month>
<year>2026</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2026 Yang, Chen, Zhu, Yuan, Mao, He, Wang, Wang, Wang and Wang.</copyright-statement>
<copyright-year>2026</copyright-year>
<copyright-holder>Yang, Chen, Zhu, Yuan, Mao, He, Wang, Wang, Wang and Wang</copyright-holder>
<license>
<ali:license_ref start_date="2026-02-18">https://creativecommons.org/licenses/by/4.0/</ali:license_ref>
<license-p>This is an open-access article distributed under the terms of the <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution License (CC BY)</ext-link>. The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</license-p>
</license>
</permissions>
<abstract>
<sec>
<title>Objective</title>
<p>To clarify atorvastatin&#x2019;s role in diabetic peripheral neuropathy (DPN) amid its controversial neuroprotective and neurotoxic effects.</p>
</sec>
<sec>
<title>Methods</title>
<p>Integrated network toxicology, single-cell RNA sequencing (scRNA-seq), molecular docking, molecular dynamics simulations, and <italic>in vitro</italic> assays (CCK-8, ELISA) on high-glucose-induced RSC 96 Schwann cells.</p>
</sec>
<sec>
<title>Results</title>
<p>Network toxicology identified TNF, CTNNB1, CASP3 as core targets (TNF as key hub), enriched in DPN-related pathways (oxidative stress, inflammation). scRNA-seq suggested that these targets are expressed in sensory neuron populations. Molecular docking and molecular dynamics simulations suggested that atorvastatin can interact with the selected targets, with relatively favorable predicted affinity for TNF&#x3b1;. <italic>In vitro</italic>, atorvastatin reduced cell viability in a time- and dose-dependent manner and was associated with increased TNF&#x3b1; levels under high-glucose conditions.</p>
</sec>
<sec>
<title>Conclusion</title>
<p>Our findings are consistent with a potential involvement of TNF/TNF&#x3b1;-associated inflammatory responses in atorvastatin-related cellular injury under the tested <italic>in vitro</italic> conditions. Further TNF&#x3b1; blocking/knockdown experiments will be needed to determine causality.</p>
</sec>
</abstract>
<kwd-group>
<kwd>atorvastatin</kwd>
<kwd>DPN</kwd>
<kwd>molecular docking</kwd>
<kwd>network toxicology</kwd>
<kwd>single-cell RNA sequencing</kwd>
<kwd>TNF&#x3b1;</kwd>
</kwd-group>
<funding-group>
<award-group id="gs1">
<funding-source id="sp1">
<institution-wrap>
<institution>Sichuan Medical Association</institution>
<institution-id institution-id-type="doi" vocab="open-funder-registry" vocab-identifier="10.13039/open_funder_registry">10.13039/100032767</institution-id>
</institution-wrap>
</funding-source>
</award-group>
<funding-statement>The author(s) declared that financial support was received for this work and/or its publication. This research was funded by grants from Young Innovation Project of Sichuan Medical Association (No. Q2024077), Scientific Research Fund of the Affiliated Hospital of Southwest Medical University (24,234). Postdoctoral Research Start-up Funding for Wang Xingxia (00170084). Science and Technology Strategic Cooperation Program between the Luzhou Municipal People&#x2019;s Government and Southwest Medical University (2025LZXNYDJC28). Renshou County People&#x2019;s Hospital&#x2013;Southwest Medical University Strategic Science and Technology Cooperation (2025RSXNYD05). Applied Basic Research Project of Southwest Medical University (25YYJC0183). 2025 Medical Science and Technology Program of the Sichuan Provincial Health Commission (25RKX0045).</funding-statement>
</funding-group>
<counts>
<fig-count count="7"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="74"/>
<page-count count="19"/>
</counts>
<custom-meta-group>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Medicinal and Pharmaceutical Chemistry</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<label>1</label>
<title>Introduction</title>
<p>Diabetes has emerged as a global health crisis, with its prevalence reaching unprecedented levels and imposing a heavy burden on healthcare systems worldwide. Among the complications of diabetes, diabetic peripheral neuropathy (DPN) is one of the most common and disabling microvascular complications, affecting up to 50% of diabetic patients (<xref ref-type="bibr" rid="B13">Dilshad and Ephrem, 2023</xref>), while its estimated prevalence among U.S. adults with diabetes is 28% (<xref ref-type="bibr" rid="B24">Hicks and Selvin, 2019</xref>). This progressive neurological disorder is characterized by distal symmetric polyneuropathy and manifests through symptoms such as numbness, burning pain, and motor dysfunction (<xref ref-type="bibr" rid="B53">Sanaye and Kavishwar, 2023</xref>). These symptoms not only severely impair patients&#x2019; quality of life but also increase the risk of foot ulcers, which often progress to amputations, further worsening disability and even being life-threatening (<xref ref-type="bibr" rid="B61">Volmer-Thole and Lobmann, 2016</xref>).</p>
<p>The damage of peripheral nerve by metabolics dysfunction in the late stages leads to DPN to occur (<xref ref-type="bibr" rid="B74">Zhu et al., 2024</xref>). Hyperglycemia, which is typical for diabetes mellitus, causes a number of harmful biological processes and excites the excessive production of reactive oxygen species (ROS). Glucose-induced oxidative stress hampers cell&#x2019;s antioxidant mechanisms and damages lipids, proteins and DNA in neurons (<xref ref-type="bibr" rid="B33">Lee et al., 2020</xref>). Constant increase in blood glucose facilitates the accumulation of advanced glycation end products (AGEs), produced by non-enzymatic reactions between sugar and protein. Activation of the pro-inflamatory pathways and neuroinflammation by AGEs ligated to the receptor represents one of the main mechanisms contributing to the nerve damage. In this inflammatory context, tumor necrosis factor-&#x3b1; (TNF&#x3b1;) has been implicated in the development of DPN. A meta-analysis reported elevated circulating TNF&#x3b1; levels in patients with DPN compared with diabetic individuals without neuropathy, supporting an association between TNF&#x3b1; and DPN. Moreover, experimental inactivation/neutralization of TNF&#x3b1; in streptozotocin-induced diabetic mice ameliorated neuropathy-related functional deficits and was accompanied by changes in downstream inflammatory signaling (including NF-&#x3ba;B-related readouts), suggesting that TNF&#x3b1;-associated inflammation may contribute to DPN pathophysiology. Therefore, TNF&#x3b1; represents a plausible mediator linking metabolic stress to inflammation-related peripheral nerve injury, although the causal contribution of TNF&#x3b1; may depend on disease stage and experimental context (<xref ref-type="bibr" rid="B45">Mu et al., 2017</xref>; <xref ref-type="bibr" rid="B66">Yamakawa et al., 2011</xref>). Mitochondrial dysfunction also has an important role, besides blocking energy production, the latter activates ROS production (<xref ref-type="bibr" rid="B3">Bai and Luo, 2024</xref>). They disrupt axonal transport, impair neurovascular endothelial function, and accelerate demyelination (<xref ref-type="bibr" rid="B8">Cardoso and Salles, 2016</xref>; <xref ref-type="bibr" rid="B62">Wu et al., 2013</xref>).</p>
<p>Atorvastatin, an inhibitor of 3-hydroxy-3-methylglutaryl-coenzyme A (HMG-CoA) reductase, is widely used to lower lipids and cardiovascular risk in hypercholesterolemia (<xref ref-type="bibr" rid="B33">Lee et al., 2020</xref>; <xref ref-type="bibr" rid="B43">Meng et al., 2019</xref>). Despite there is abundant evidence that atorvastatin is causes neurological adverse reactions, diabetic patients are concerned that prolonged or high-dose use could lead to the exacerbation or progression of peripheral neuropathy (<xref ref-type="bibr" rid="B16">Evangelista et al., 2019</xref>). It seems that the atorvastatin neurotoxicity could manifest itself in various aspects. In addition to increasing oxidative stress via ROS overproduction in the neuronal cells, the loss of mitochondrial homeostasis and maintenance of the cellular metabolism are revealed. Inhibition of the cholesterol synthesis in neurons&#x2019; membranes and the membranes integrity are involved (<xref ref-type="bibr" rid="B40">Matoba et al., 2019</xref>; <xref ref-type="bibr" rid="B64">Xie et al., 2023</xref>). These combined factors worsen nerve damage in diabetic patients and can initiate or speed up DPN. A person&#x2019;s susceptibility to this damage depends on drug interactions, genetic predisposition, and overall health (<xref ref-type="bibr" rid="B43">Meng et al., 2019</xref>). Detailed assessment of potential neurotoxicity of atorvastatin is necessary to better understand its benefits when applied to patients with DPN.</p>
<p>Network toxicology is a relatively advanced approach that integrates multi-omics data, protein-protein interaction (PPI) networks, and pathway analysis, providing a very useful framework for addressing such complex situations. By aggregating and analyzing large-scale datasets, it can identify key molecular targets and signal cascades mediating drug effects, which are introduced in references (<xref ref-type="bibr" rid="B35">Lin et al., 2021</xref>; <xref ref-type="bibr" rid="B63">Wu et al., 2023</xref>). This method has been successfully used to clarify the toxicological mechanisms of environmental pollutants and drugs, such as muscle-related adverse reactions induced by statins. Applying network toxicology to the research of atorvastatin and DPN enables researchers to systematically depict the interactions between drug targets and molecules involved in the pathogenesis of DPN, such as molecules regulating oxidative stress, apoptosis and neurotrophic factor signaling. These molecules support the survival and repair of neurons. In addition, molecular docking can predict the binding affinity of atorvastatin and key targets related to DPN, which can select the most likely biologically relevant interactions that are worthy of experimental verification (<xref ref-type="bibr" rid="B56">Sun et al., 2023</xref>). This synergy between computational and experimental methods bridges the gap between <italic>in silico</italic> analysis and <italic>in vivo</italic> significance, and accelerate the discovery of actionable mechanisms.</p>
<p>As a supplementary content to network toxicology and molecular docking methods, single-cell RNA sequencing (scRNA-seq) has become a revolutionary tool. It can study complex biological processes and disease mechanisms with resolution never seen before (<xref ref-type="bibr" rid="B2">Awuah et al., 2023</xref>). By capturing the complete transcriptome expression profile at the single-cell level, scRNA-seq has solved the limitations of bulk sequencing and it will average the gene expression in cell populations and mask the heterogeneity within tissues. This technology can describe the gene expression patterns within individual cells, thereby revealing the functional diversity specific to cell types, identifying rare or previously undiscovered cell subpopulations, and depicting the dynamic transcriptional changes related to drug exposure or disease progression. With the continuous development of gene chips and bioinformatics technologies, scRNA-seq data are widely used in disease research to crack complex pathogenic mechanisms. In the context of neurological disorders such as DPN, scRNA-seq offers a particular opportunity to determine how atorvastatin regulates gene expression in different cell types involved in peripheral nerve homeostasis, including neurons, Schwann cells, and vascular endothelial cells, etc. It can also provide insights into the mechanisms by which it functions at the cellular level.</p>
<p>This study aims to integrate network toxicology, molecular docking, molecular dynamics simulation, scRNA-seq and other methods to comprehensively explore the possible effects of atorvastatin on DPN (<xref ref-type="fig" rid="F1">Figure 1</xref>). To clarify the potential molecular mechanisms behind the various effects of atorvastatin on peripheral nerves, multiple research strategies have been adopted. This includes conducting systematic network toxicology-based studies on the interaction between atorvastatin and its biological targets, using molecular docking to predict the binding affinity between the drug and the target, verifying the kinetic stability of the conjugate through molecular dynamics simulation methods, and describing the transcriptional responses specific to cell types using single-cell RNA sequencing. The toxicity of atorvastatin on peripheral neuro-related cells was verified in an <italic>in vitro</italic> cell model by the CCK-8 method, and cell experiments were conducted to confirm the mediating role of related molecules in atorvastatin-induced DPN, deepening our understanding of the role of atorvastatin in DPN and provided more precise and personalized treatment strategies for this intractable complication. Clarifying this complex relationship can create conditions for improving the care of millions of diabetic patients and those with neurological sequelae worldwide.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Schematic representation of the methodological framework and analytical pipeline implemented in the present investigation.</p>
</caption>
<graphic xlink:href="fchem-14-1739085-g001.tif">
<alt-text content-type="machine-generated">Composite scientific figure displays a workflow of bioinformatics and experimental analyses. The left panel includes Venn diagrams, network graphs, and circular charts illustrating gene overlap and pathway analyses. Top right shows a bar graph of cell viability with Western blots. Middle right presents a protein-ligand docking model with interaction residues highlighted. Below that, a single-cell UMAP plot labeled &#x22;Tnf&#x22; visualizes gene expression clusters. Bottom right includes line graphs and bar charts representing additional quantitative data analyses.</alt-text>
</graphic>
</fig>
</sec>
<sec sec-type="materials|methods" id="s2">
<label>2</label>
<title>Materials and methods</title>
<sec id="s2-1">
<label>2.1</label>
<title>Network toxicology</title>
<p>The direct protein targets of atorvastatin were predicted using the STITCH database (<ext-link ext-link-type="uri" xlink:href="http://stitch.embl.de/">http://stitch.embl.de/</ext-link>), which specializes in protein-chemical interactions, and the SwissTargetPrediction database (<ext-link ext-link-type="uri" xlink:href="https://www.swisstargetprediction.ch/">https://www.swisstargetprediction.ch/</ext-link>), respectively. The intersection of targets from the two databases was obtained to minimize false positives and define reliable drug targets. Genes associated with DPN were retrieved from the GeneCards database (<ext-link ext-link-type="uri" xlink:href="https://www.genecards.org/">https://www.genecards.org/</ext-link>) and OMIM database (<ext-link ext-link-type="uri" xlink:href="https://omim.org/">https://omim.org/</ext-link>) using &#x201c;diabetic peripheral neuropathy&#x201d; as the search query. Duplicate entries were then removed to generate a comprehensive list of DPN-related genes.</p>
<p>Subsequently, R 4.4.3 was launched, and the &#x201c;VennDiagram&#x201d; package was installed and loaded. Separate datasets for atorvastatin targets and DPN-related genes were created, and Venn diagram analysis was performed to identify common targets. These overlapping targets were then uploaded to the STRING database (<ext-link ext-link-type="uri" xlink:href="https://string-db.org/">https://string-db.org/</ext-link>), and used to construct a PPI network, limiting the search to <italic>Homo sapiens</italic> with a confidence score &#x2265;0.4. The resulting PPI data was imported as a tab-separated values file (.tsv) into Cytoscape v3.10.2(<ext-link ext-link-type="uri" xlink:href="https://cytoscape.org/">https://cytoscape.org/</ext-link>). Two additional nodes, &#x2018;Atorvastatin&#x2019; and &#x2018;DPN,&#x2019; were manually added and connected to their respective targets within the network to improve visualization.</p>
<p>To further refine the PPI network, the overlapping targets were re-analyzed in STRING database, retaining only interactions with a confidence score &#x2265;0.4. Protein interaction data were then exported as a &#x2018;protein_links.tsv&#x2019; file and imported into Cytoscape v3.10.2 for network visualization and analysis. A PPI network was algorithmically generated by defining source nodes, target nodes, and edge attributes.</p>
<p>Network topological parameters were analyzed utilizing the &#x201c;Network Analyzer&#x201d; plugin in Cytoscape v3.10.2. The resulting dataset was exported to Excel for calculation of average node degree. Nodes were sorted in descending order based on degree values, and a threshold was applied to identify core targets. The node exhibiting the highest degree was designated as the network&#x2019;s central hub, with the number of connected edges recorded. An annotated screenshot of the network was captured, highlighting these core targets.</p>
<p>Gene symbols of core targets were converted to Entrez Gene IDs using the &#x201c;clusterProfiler&#x201d; and &#x201c;org.Hs.eg.db&#x201d; packages in R 4.4.3. These Entrez Gene IDs were uploaded to the DAVID database (<ext-link ext-link-type="uri" xlink:href="https://david.ncifcrf.gov/">https://david.ncifcrf.gov/</ext-link>) and categorized under the &#x201c;ENTREZ_GENE_ID&#x201d; identifier type. On the &#x201c;Functional Annotation&#x201d; interface, GO categories were selected, and significantly enriched terms were identified using thresholds of <italic>P</italic> &#x3c; 0.05 and false discovery rate (FDR) &#x3c; 0.05. Similarly, the &#x201c;KEGG_PATHWAY&#x201d; option was utilized to detect significantly enriched pathways under identical statistical criteria.</p>
<p>Results were exported, and bubble plots were generated in R 4.4.3 using the &#x201c;ggplot2&#x201d; package, where bubble dimensions corresponded to the number of enriched genes and color intensity reflected FDR values. These visualizations were archived for subsequent analytical procedures.</p>
</sec>
<sec id="s2-2">
<label>2.2</label>
<title>Single-cell sequencing</title>
<p>Single-cell level bone transcriptomic data from mouse models of T2DM were downloaded from the GEO database (<ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE272612">https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc&#x3d;GSE272612</ext-link>). Notably, GSE272612 is a bone tissue single-cell transcriptomic dataset from mouse T2DM models. In this study, we used this dataset as an exploratory, hypothesis-generating resource to examine cell-type&#x2013;associated expression patterns of candidate genes. Therefore, the scRNA-seq results should not be interpreted as direct evidence for gene localization in peripheral nerve tissue. First, the Read10X function was used to read 10X data of the group, and the CreateSeuratObject function (with parameters set to min.cells &#x3d; 3 and min.features &#x3d; 200, and sample groups used as project names) was applied to construct individual Seurat objects. All Seurat objects were then merged using the merge function (with add.cell.ids to label sample sources), and after integrating data layers via JoinLayers, the Group information was added to the meta.data of the Seurat object using the match function (<xref ref-type="bibr" rid="B19">Franz&#xe9;n et al., 2019</xref>). Subsequently, the PercentageFeatureSet function (pattern &#x3d; &#x201c;&#x5e;mt-&#x201d;) was used to calculate the percentage of mitochondrial genes in cells, which was stored in the percent.mt column of meta.data; low-quality cells were filtered using the subset function with the criterion of nFeature_RNA &#x3e;200 and nFeature_RNA &#x3c;4,000. During data preprocessing, normalization was conducted using the NormalizeData function (method: &#x201c;LogNormalize&#x201d;, scale.factor &#x3d; 10,000); highly variable genes were screened via the FindVariableFeatures function (method: &#x201c;vst&#x201d;, nfeatures &#x3d; 2000); and the expression matrix of highly variable genes was standardized and centered using the ScaleData function to prepare for principal component analysis (PCA). In dimensionality reduction and clustering analysis, PCA was performed based on highly variable genes using the RunPCA function, and the PCA results were visualized by the DimPlot function with coloring by Group. The ElbowPlot function was used to analyze PCA inflection points, and 1&#x2013;15 principal components (PCs) were determined for clustering. The FindNeighbors function (dims &#x3d; 1:15) was used to construct a cell adjacency matrix, and cell clustering was conducted using the FindClusters function (resolution &#x3d; 0.5). UMAP dimensionality reduction was performed via the RunUMAP function (dims &#x3d; 1:15), and the UMAP clustering results were visualized using the DimPlot function (label &#x3d; TRUE, pt.size &#x3d; 0.1, legend hidden). For marker gene identification, the FindAllMarkers function (only.pos &#x3d; TRUE, min.pct &#x3d; 0.25, logfc.threshold &#x3d; 0.25, return.thresh &#x3d; 0.05) was used to screen significant highly variable genes for each cluster. Top 10 marker genes per cluster were selected based on avg_log2FC by grouping by cluster (group_by(cluster)), and these genes were saved as &#x201c;top.markers.csv&#x201d; and &#x201c;pbmc.markers.csv&#x201d;. In the cell type annotation stage, a cluster-cell type correspondence list was constructed manually based on marker genes and known cell type markers from the PanglaoDB databases (<xref ref-type="bibr" rid="B19">Franz&#xe9;n et al., 2019</xref>), where 16 clusters were annotated as neuronal cluster (neuronal-like), Oligodendrocyte, Astrocytes, EC, Pericytes, Smooth muscle c., Macrophages, Fibroblasts, and Neutrophils. Cell types were renamed using the RenameIdents function, and cell type information was added to the celltype column of meta.data via the mutate function. The UMAP annotation results were visualized using the DimPlot function (label &#x3d; TRUE, pt.size &#x3d; 0.1, repel &#x3d; TRUE, legend hidden, title: &#x201c;Cell Type Annotation Results&#x201d;). Finally, the FeaturePlot function was used to display the expression distribution of TNF, CTTNB1, and CASP3 genes in single cells, so as to intuitively present the expression characteristics of target genes in different cell types. These plots are presented to illustrate expression patterns within this dataset and are intended for contextual support rather than definitive tissue-specific localization.</p>
</sec>
<sec id="s2-3">
<label>2.3</label>
<title>Molecular docking</title>
<p>Structural preprocessing encompassed both ligand and receptor preparation. The ligand atorvastatin(SMILES:CC(C)C1 &#x3d; C(C(&#x3d;C(N1CC[C@H](C[C@H](CC(&#x3d;O)O)O)O)C2 &#x3d; CC &#x3d; C(C&#x3d;C2)F)C3 &#x3d; CC &#x3d; CC &#x3d; C3)C(&#x3d;O)NC4 &#x3d; CC &#x3d; CC &#x3d; C4) was imported into PyMOL 2.2.0, and crystallographic water molecules as well as non-essential atoms were removed. Hydrogen atoms were added and Gasteiger charges were assigned using AutoDockTools 1.5.7. Rotatable bonds were identified and preserved, with torsion degrees of freedom verified using the Torsion Tree tool. The fully prepared ligand was subsequently exported in &#x201c;.pdbqt&#x201d; format.</p>
<p>Crystal structures of the receptors CTNNB1 (&#x3b2;1-Catenin, PDB ID: 1TNF), CASP3 (Caspase-3, PDB ID: 2DKO), and TNF&#x3b1; (Tumor Necrosis Factor-&#x3b1;, PDB ID: 3FQN) were downloaded from the RCSB Protein Data Bank (<ext-link ext-link-type="uri" xlink:href="https://www.rcsb.org/">https://www.rcsb.org/</ext-link>). For each receptor (CTNNB1, CASP3, and TNF&#x3b1;), the corresponding crystal structure was imported into PyMOL 2.2.0. Non-protein components, including co-crystallized ligands, counterions, and bulk solvent molecules, were removed; only conserved water molecules for maintaining the active site structure were retained. The purified protein structures underwent further processing in AutoDockTools 1.5.7: hydrogen atoms were added, protonation states adjusted to reflect physiological pH (7.4), and Gasteiger charges calculated. All atomic bonds were fixed prior to exporting the final receptor structures in PDBQT format.</p>
<p>Docking parameters and execution proceeded as follows. Based on crystallographic data and prior functional studies, binding pocket locations for CTNNB1, CASP3, and TNF&#x3b1; were mapped, with their center coordinates defined in AutoDockTools 1.5.7. A grid box was centered on each active site, and its dimensions were adjusted to fully encompass the entire binding region. A grid spacing of 0.375&#xa0;&#xc5; was employed to ensure adequate sampling of ligand conformations while minimizing computational redundancy. The &#x201c;exhaustiveness&#x201d; parameter was set to 32 to balance search depth and computational efficiency, with other parameters maintained at their optimized defaults.</p>
<p>Following docking initiation, docking poses with a appropriate binding energy were initially selected. Ligand-receptor interaction modes were visually inspected using PyMOL 2.2.0. The optimal final pose for each receptor was determined based on three criteria: the lowest binding energy, stable interactions with key residues reported to mediate ligand binding, and the absence of significant steric hindrance. The selected conformations were then exported for subsequent analyses.</p>
</sec>
<sec id="s2-4">
<label>2.4</label>
<title>Molecular dynamics simulations</title>
<p>To investigate the binding interactions between the receptor and ligand, molecular dynamics simulations of the protein-ligand complex were conducted using GROMACS 2020.3 software (<xref ref-type="bibr" rid="B59">Van Der Spoel et al., 2005</xref>). The amber99sb-ildn force field and General Amber Force Field (GAFF) were applied to generate the parameters and topological structures for the protein and ligand, respectively. The simulation box was dimensioned such that each atom of the protein maintained a distance greater than 1.0&#xa0;nm from the box edges. SPC216 water molecules were used to fill the box, with a portion replaced by Na<sup>&#x2b;</sup> and Cl<sup>&#x2212;</sup> ions to ensure the system&#x2019;s electrical neutrality. The steepest descent algorithm was used to minimize the entire system, thus eliminating unfavorable atomic contacts and overlaps. For adequate pre-equilibration, 100-picosecond (ps) simulations of the NVT and NPT ensembles were performed at 300&#xa0;K (K) and 1&#xa0;bar, respectively. This was followed by a 100-nanosecond (ns) molecular dynamics simulation under periodic boundary conditions. The temperature (300&#xa0;K) and pressure (1&#xa0;bar) were controlled using the V-rescale and Parrinello-Rahman methods, with an integration step of two femtoseconds (fs). Long-range electrostatic interactions were computed via the Particle Mesh Ewald (PME) method, with a Fourier spacing of 0.16&#xa0;nm (nm). All bond lengths were constrained using the LINCS algorithm. Trajectory visualization, analysis, and animation were carried out using VMD 1.9.3 and PyMOL 2.2.0. The binding free energy of the complex was determined using gmx_mmpbsa.</p>
</sec>
<sec id="s2-5">
<label>2.5</label>
<title>Cell viability assay</title>
<p>Rat Schwann cells (RSC96; iCell, China) were maintained in DMEM containing 10% fetal bovine serum (FBS) and 1% penicillin&#x2013;streptomycin at 37&#xa0;&#xb0;C with 5% CO<sub>2</sub>. To mimic a diabetic condition <italic>in vitro</italic>, cells were cultured in high-glucose medium (HG, 30&#xa0;mM), while normal glucose (NG, 5.5&#xa0;mM) was used as the control. Atorvastatin (ATV) was added where indicated at final concentrations of 5, 10, 20, 40, 80, 160, or 320&#xa0;&#x3bc;M.</p>
<p>For viability measurements, cells were seeded into 96-well plates and allowed to attach for 24&#xa0;h. The medium was then replaced with NG or HG medium with or without ATV, and cells were incubated for 24&#xa0;h or 48&#xa0;h. After treatment, the supernatant was removed and 100&#xa0;&#x3bc;L serum-free DMEM was added to each well, followed by 10&#xa0;&#x3bc;L CCK-8 solution (Beyotime Biotechnology). Plates were protected from light and incubated for 1.5&#xa0;h, and absorbance was read at 450&#xa0;nm using a microplate reader. Each condition was run in six wells per experiment. Results are presented as mean &#xb1; SD from at least three independent experiments.</p>
</sec>
<sec id="s2-6">
<label>2.6</label>
<title>Enzyme-linked immunosorbent assay</title>
<p>TNF&#x3b1; levels in culture supernatants were measured using a commercial ELISA kit according to the manufacturer&#x2019;s protocol. Briefly, after the indicated treatments, cell culture media were collected and centrifuged at 12,000 &#xd7; g for 10&#xa0;min at 4&#xa0;&#xb0;C to remove cells and debris. The clarified supernatants were then used for ELISA.</p>
<p>A standard curve was generated using serial dilutions of the provided TNF&#x3b1; standard (80, 40, 20, 10, 5, and 2.5&#xa0;pg/mL). For each well, 50&#xa0;&#x3bc;L of standards or samples were added (blank wells contained assay buffer only), followed by 100&#xa0;&#x3bc;L of HRP-conjugated detection antibody. Plates were sealed and incubated at 37&#xa0;&#xb0;C for 60&#xa0;min. Wells were washed five times with wash buffer (350&#xa0;&#x3bc;L per wash). Substrate A (50&#xa0;&#x3bc;L) and Substrate B (50&#xa0;&#x3bc;L) were then added and incubated for 15&#xa0;min at 37&#xa0;&#xb0;C in the dark. The reaction was stopped with 50&#xa0;&#x3bc;L stop solution, and absorbance was read at 450&#xa0;nm within 15&#xa0;min using a microplate reader. TNF&#x3b1; concentrations were calculated from the standard curve.</p>
</sec>
<sec id="s2-7">
<label>2.7</label>
<title>Western blot analysis</title>
<p>RSC96 cells were treated under NG or H) conditions with ATV and/or the TNF signaling inhibitor R-7050 (TargetMol, Cat. No. T4637) as indicated. At the end of treatment, cells were washed twice with ice-cold PBS and lysed in RIPA buffer supplemented with protease and phosphatase inhibitors. Lysates were kept on ice for 20&#xa0;min with occasional mixing and then clarified by centrifugation at 12,000 &#xd7; g for 10&#xa0;min at 4&#xa0;&#xb0;C. Protein concentrations were determined using a BCA assay, and equal amounts of protein were denatured in SDS loading buffer and separated by SDS&#x2013;PAGE. Proteins were transferred onto PVDF membranes, which were then blocked in 5% BSA for phospho-proteins in TBST.</p>
<p>Membranes were incubated overnight at 4&#xa0;&#xb0;C with primary antibodies against phospho-NF-&#x3ba;B p65 (Ser536), total NF-&#x3ba;B p65, and &#x3b2;-actin, followed by incubation with HRP-conjugated secondary antibodies at room temperature. Immunoreactive bands were visualized using an enhanced chemiluminescence (ECL) substrate and imaged with a chemiluminescence detection system. Band intensities were quantified by densitometry using ImageJ. Phosphorylated p65 was normalized to total p65, and &#x3b2;-actin served as the loading control.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<label>3</label>
<title>Results</title>
<sec id="s3-1">
<label>3.1</label>
<title>Network toxicology and molecular docking</title>
<p>Target prediction analysis showed that compound AC1L1D9C interacts with AHR, HMGCR, and DPP4, suggesting it may exert biological effects by regulating these targets and laying a foundation for further elucidating its mechanism (<xref ref-type="fig" rid="F2">Figure 2A</xref>). Venn diagram analysis of target screening results from STITCH and SwissTargetPrediction databases showed that STITCH contains two unique targets (2.0%), SwissTargetPrediction contains 99 unique targets (97.1%), and there is 1 common target (1.0%) between them (<xref ref-type="fig" rid="F2">Figure 2B</xref>). GeneCards and OMIM database gene screening results via Venn diagram showed that GeneCards covered 2,495 genes (95.0%), OMIM had two unique genes (0.1%), and there were 130 common genes (4.9%) between them (<xref ref-type="fig" rid="F2">Figure 2C</xref>). This result suggests that atorvastatin may participate in the pathogenesis of DPN through the synergistic effects of multiple targets, providing a foundation for subsequent mechanistic studies.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>
<bold>(A)</bold> atorvatatin target retrieved from the STITCH. <bold>(B)</bold> Number of atorvatatin target genes predicted by the STITCH and SwissTargetPrediction databases. <bold>(C)</bold> Number of DPN-related genes retrieved from the OMIM and GeneCards databases. <bold>(D)</bold> DPN-target gene-atorvatatin regulatory network: the upper panel represents DPN, the central panel represents target genes, and the lower panel represents atorvatatin. <bold>(E)</bold> Global molecular interaction network. <bold>(F)</bold> Circular visualization of Gene Ontology (GO) enrichment analysis for genes associated with atorvastatin and DPN, including biological processes (BP), cellular components (CC), and molecular functions (MF). <bold>(G)</bold> Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of genes/molecules associated with atorvastatin and DPN.</p>
</caption>
<graphic xlink:href="fchem-14-1739085-g002.tif">
<alt-text content-type="machine-generated">Panel A shows a network diagram connecting AC11LD9C to HMGCR, DPP4, and AHR. Panel B contains a Venn diagram comparing STITCH and SwissTargetPrediction databases with overlap. Panel C displays a proportional Venn diagram showing overlap between GeneCards and OMIM datasets. Panel D presents a bipartite network linking atorvastatin to gene targets associated with diabetic peripheral neuropathy. Panel E illustrates a protein-protein interaction network graph with labeled nodes. Panel F is a circular bar chart representing gene ontology categories with color-coded segments. Panel G contains a dot plot showing pathway enrichment analysis, with pathways on the y-axis and gene ratios and p-values indicated by bubble size and color.</alt-text>
</graphic>
</fig>
<p>The molecular association network confirmed TNF as an overlapping gene between DPN and atorvastatin (<xref ref-type="fig" rid="F2">Figure 2D</xref>). The PPI network contained 57 nodes and 299 interaction edges. Topological analysis showed an average node degree of 10.491. Using a node degree &#x2265;20 as the cutoff, 30 core targets were identified, with TNF as the core node possessing 41 edges (<xref ref-type="fig" rid="F2">Figure 2E</xref>).</p>
<p>GO analysis yielded 1,170 terms (<xref ref-type="fig" rid="F2">Figure 2F</xref>). Among these, 1,063 belonged to Biological Process, including synaptic vesicle exocytosis (GO:00071216) and neurotransmitter release, processes related to abnormal nerve conduction in DPN, and lipid metabolic processes associated with disrupted myelin homeostasis. There were 23 Cellular Component terms, such as vesicular lumen (GO:0012505) and mitochondrial membrane; dysfunction in these components may lead to impaired neurotransmitter release and mitochondrial dysfunction, related to DPN-induced hypoesthesia. Eighty-four terms were Molecular Functions, covering G protein-coupled receptor activity, linked to pain signal modulation, and lipid binding, associated with myelin impairment.</p>
<p>KEGG enrichment results (<xref ref-type="fig" rid="F2">Figure 2G</xref>) indicated pathways grouped into metabolic disorders, inflammatory responses, and immune regulation, consistent with DPN pathology. The TNF signaling pathway was enriched (GeneRatio &#x223c;0.10). With a significant p.adjust value and gene count, this underscores the role of TNF-mediated signaling in the underlying processes.</p>
</sec>
<sec id="s3-2">
<label>3.2</label>
<title>Single-cell sequencing</title>
<p>Results of single-cell RNA sequencing. To provide cell-type&#x2013;associated context for candidate genes, we analyzed single-cell RNA-seq data from a mouse T2DM bone tissue dataset (GSE272612). After quality control and clustering, cells were divided into 18 clusters and annotated into 10 major cell types based on canonical marker genes, including Macrophages, Neutrophils, Fibroblasts, B cells, Endothelial Cells (EC), a neuronal cluster (neuronal-like), T memory cells, NK cells, Erythroid-like cells, and Basophils (<xref ref-type="fig" rid="F3">Figure 3A</xref>). The core genes TNF, CTNNB1, and CASP3 showed cluster-dependent expression patterns, including expression in the neuronal cluster annotated based on marker genes within this dataset (<xref ref-type="fig" rid="F3">Figures 3B&#x2013;D</xref>). These results are presented as exploratory and reflect expression patterns within the analyzed dataset rather than definitive peripheral-nerve localization.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Single-cell RNA-seq analysis of candidate gene expression in an external mouse T2DM bone tissue dataset (GSE272612). <bold>(A)</bold> UMAP visualization showing major cell-type annotations based on canonical marker genes. <bold>(B&#x2013;D)</bold> Feature plots showing the expression distributions of TNF, CTNNB1, and CASP3 across annotated cell populations within this dataset.</p>
</caption>
<graphic xlink:href="fchem-14-1739085-g003.tif">
<alt-text content-type="machine-generated">Panel A shows a UMAP plot with distinct cell clusters labeled as B cells, T memory cells, Erythroid-like, Neutrophils, NK cells, Neurons, EC, Fibroblasts, Basophils, and Macrophages. Panels B, C, and D display UMAP plots depicting gene expression of Tnf, Ctnnb1, and Casp3, respectively, indicated by color intensity from white to blue, with blue representing higher expression. Each panel is labeled with a corresponding letter and gene name where appropriate.</alt-text>
</graphic>
</fig>
</sec>
<sec id="s3-3">
<label>3.3</label>
<title>Molecular docking</title>
<p>The binding energy of TNF&#x3b1;&#x2013;atorvastatin was &#x2212;10.2&#xa0;kcal/mol, suggesting a relatively favorable predicted interaction. The docking pose indicated multiple potential non-covalent contacts (e.g., hydrogen bonds/salt-bridge-like interactions) involving ARG-103, GLN-102 and GLU-104 (<xref ref-type="fig" rid="F4">Figure 4A</xref>). The binding energy of CTNNB1-atorvastatin was &#x2212;7.64&#xa0;kcal/mol, indicating a strong interaction (<xref ref-type="fig" rid="F4">Figure 4B</xref>). Atorvastatin formed a stable complex with CTNNB1 via strong intermolecular interactions (e.g., hydrogen bonds and salt bridges), which involved LYS-5 (1.8&#xa0;&#xc5;) and ILE-6 (1.9&#xa0;&#xc5;) of CTNNB1. The binding energy of CASP3-atorvastatin was &#x2212;4.54&#xa0;kcal/mol, indicating a weak-to-moderate interaction (<xref ref-type="fig" rid="F4">Figure 4C</xref>). Atorvastatin bound to CASP3 through strong interactions such as hydrogen bonds and salt bridges, involving HIS-185 (2.2&#xa0;&#xc5;) and ARG-149 (2.5&#xa0;&#xc5;) of CASP3.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>
<bold>(A)</bold> Molecular docking and binding mode of TNF&#x3b1; with atorvastatin. <bold>(B)</bold> Molecular docking and binding mode of CTNNB1 with atorvastatin. <bold>(C)</bold> Molecular docking and binding mode of CASP3 with atorvastatin.</p>
</caption>
<graphic xlink:href="fchem-14-1739085-g004.tif">
<alt-text content-type="machine-generated">Panel A shows a molecular docking simulation of atorvastatin (green) with TNF&#x3B1; protein (purple ribbon), highlighting interacting residues and distances; binding affinity is -10.2. Panel B presents atorvastatin docked to CTNNB1, showing key residue interactions and a binding affinity of -7.64. Panel C depicts atorvastatin bound to CASP3, indicating interacting residues HIS-185 and ARG-149 with a binding affinity of -4.54. Each panel includes a detailed close-up of the binding pocket with labeled interacting amino acids and distances in angstroms.</alt-text>
</graphic>
</fig>
</sec>
<sec id="s3-4">
<label>3.4</label>
<title>Molecular dynamics simulation</title>
<p>To evaluate the contribution of each component in the experimental system, we quantified the relevant parameters and summarized the results (<xref ref-type="table" rid="T1">Table 1</xref>). TNF&#x3b1;-atorvastatin complex exhibited favorable structural stability, with the mean RMSD of the complex was 0.29 &#xb1; 0.02&#xa0;nm, and the ligand RMSD was 0.15 &#xb1; 0.02&#xa0;nm, showing that the ligand could exist stably in the binding pocket (<xref ref-type="fig" rid="F5">Figure 5A</xref>). The gyration radius of the protein being 2.16 &#xb1; 0.00&#xa0;nm, indicating a compact overall conformation of the system (<xref ref-type="fig" rid="F5">Figure 5B</xref>). The Solvent Accessible Surface Area (SASA) value was 196.82 &#xb1; 2.97&#xa0;nm<sup>2</sup>, indicating a moderate level of surface exposure after binding (<xref ref-type="fig" rid="F5">Figure 5C</xref>). The mean RMSF of the protein was 0.12 &#xb1; 0.07&#xa0;nm, suggesting low overall flexibility of residues and good structural stability (<xref ref-type="fig" rid="F5">Figure 5D</xref>). Hydrogen bond analysis revealed that the complex formed an average of four protein-ligand hydrogen bonds, which provided electrostatic stabilization and spatial positioning for ligand binding (<xref ref-type="fig" rid="F5">Figure 5E</xref>). In the energy decomposition results, electrostatic interaction (&#x394;Eelec &#x3d; &#x2212;44.79 &#xb1; 0.45&#xa0;kcal/mol) played a dominant role, followed by van der Waals interaction (&#x394;VDWAALS &#x3d; &#x2212;44.32 &#xb1; 1.29&#xa0;kcal/mol), and the total free energy &#x394;Total was &#x2212;37.50 &#xb1; 1.35&#xa0;kcal/mol, demonstrating strong binding affinity (<xref ref-type="fig" rid="F5">Figure 5F</xref>).</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>The contribution components of binding free energy for atorvastatin with CASP3, CTNNB1 and TNF&#x3b1;.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Contribution components</th>
<th align="left">CASP3-atorvastatin</th>
<th align="left">CTNNB1-atorvastatin</th>
<th align="left">TNF&#x3b1;-atorvastatin</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">&#x394;<sub>VDWAALS</sub>
</td>
<td align="left">&#x2212;40.84 &#xb1; 1.89</td>
<td align="left">&#x2212;47.98 &#xb1; 1.17</td>
<td align="left">&#x2212;44.32 &#xb1; 1.29</td>
</tr>
<tr>
<td align="left">&#x394;E<sub>elec</sub>
</td>
<td align="left">&#x2212;38.44 &#xb1; 1.13</td>
<td align="left">&#x2212;29.81 &#xb1; 1.50</td>
<td align="left">&#x2212;44.79 &#xb1; 0.45</td>
</tr>
<tr>
<td align="left">&#x394;E<sub>GB</sub>
</td>
<td align="left">52.04 &#xb1; 0.85</td>
<td align="left">47.50 &#xb1; 0.55</td>
<td align="left">57.48 &#xb1; 0.20</td>
</tr>
<tr>
<td align="left">&#x394;E<sub>surf</sub>
</td>
<td align="left">&#x2212;5.78 &#xb1; 0.07</td>
<td align="left">&#x2212;6.84 &#xb1; 0.01</td>
<td align="left">&#x2212;5.87 &#xb1; 0.16</td>
</tr>
<tr>
<td align="left">&#x394;G<sub>gas</sub>
</td>
<td align="left">&#x2212;79.28 &#xb1; 1.20</td>
<td align="left">&#x2212;77.79 &#xb1; 1.90</td>
<td align="left">&#x2212;89.11 &#xb1; 1.33</td>
</tr>
<tr>
<td align="left">&#x394;G<sub>solvation</sub>
</td>
<td align="left">46.26 &#xb1; 0.86</td>
<td align="left">40.65 &#xb1; 0.55</td>
<td align="left">51.61 &#xb1; 0.26</td>
</tr>
<tr>
<td align="left">&#x394;Total</td>
<td align="left">&#x2212;33.03 &#xb1; 1.36</td>
<td align="left">&#x2212;37.14 &#xb1; 1.98</td>
<td align="left">&#x2212;37.50 &#xb1; 1.35</td>
</tr>
</tbody>
</table>
</table-wrap>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>
<bold>(A)</bold> Root Mean Square Deviation (RMSD) curve of the TNF&#x3b1;-atorvastatin complex during molecular dynamics simulation. <bold>(B)</bold> Radius of gyration curve of the TNF&#x3b1;-atorvastatin complex during molecular dynamics simulation. <bold>(C)</bold> Solvent Accessible Surface Area (SASA) curve of the TNF&#x3b1;-atorvastatin complex during molecular dynamics simulation. <bold>(D)</bold> Root Mean Square Fluctuation (RMSF) curve of the TNF&#x3b1;-atorvastatin complex during molecular dynamics simulation. <bold>(E)</bold> Hydrogen bond number variation of the TNF&#x3b1;-atorvastatin complex during molecular dynamics simulation. <bold>(F)</bold> Free energy contribution of key residues in the TNF&#x3b1;-atorvastatin complex.</p>
</caption>
<graphic xlink:href="fchem-14-1739085-g005.tif">
<alt-text content-type="machine-generated">Six-panel scientific figure titled &#x22;TNF&#x3B1;-atorvastatin&#x22; displays: A, RMSD Merge plots with three color-coded lines over 100 nanoseconds; B, gyrate plot showing Rg stability; C, SASA plot with area values over time; D, RMSF line graph comparing chains A, B, and C by residue; E, hydrogen bond number plot over time; F, bar graph of free energy contributions for different residues, with color-coded bars and x-axis listing residue identifiers.</alt-text>
</graphic>
</fig>
<p>Simulation results confirmed the overall stability of the CTNNB1-atorvastatin complex system. The mean RMSD of the complex was 0.31 &#xb1; 0.04&#xa0;nm, with the ligand RMSD being 0.21 &#xb1; 0.04&#xa0;nm, indicating stable binding site structure without dissociation (<xref ref-type="fig" rid="F6">Figure 6A</xref>). The gyration radius of the protein was 3.47 &#xb1; 0.03&#xa0;nm, maintaining a stable level throughout the simulation (<xref ref-type="fig" rid="F6">Figure 6B</xref>). The SASA value was 239.86 &#xb1; 5.93&#xa0;nm<sup>2</sup>, indicating relatively exposed binding sites of the complex (<xref ref-type="fig" rid="F6">Figure 6C</xref>). The mean protein RMSF was 0.17 &#xb1; 0.07&#xa0;nm, reflecting that most residues maintained low flexibility (<xref ref-type="fig" rid="F6">Figure 6D</xref>). The system formed an average of 1 hydrogen bond, suggesting that its binding stability relies more on hydrophobic interactions and van der Waals forces (<xref ref-type="fig" rid="F6">Figure 6E</xref>). Results of energy decomposition showed that van der Waals interactions (&#x394;VDWAALS &#x3d; &#x2212;47.98 &#xb1; 1.17&#xa0;kJ/mol) were the main driving force for ligand binding, followed by electrostatic interactions (&#x394;Eelec &#x3d; &#x2212;29.81 &#xb1; 1.50&#xa0;kJ/mol). The total free energy (&#x394;Total) was &#x2212;37.14 &#xb1; 1.98&#xa0;kJ/mol, demonstrating good binding affinity of the system (<xref ref-type="fig" rid="F6">Figure 6F</xref>).</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>
<bold>(A)</bold> Root Mean Square Deviation (RMSD) curve of the CTNNB1-atorvastatin complex during molecular dynamics simulation. <bold>(B)</bold> Radius of gyration curve of the CTNNB1-atorvastatin complex during molecular dynamics simulation. <bold>(C)</bold> SASA curve of the CTNNB1-atorvastatin complex during molecular dynamics simulation. <bold>(D)</bold> Root Mean Square Fluctuation (RMSF) curve of the CTNNB1-atorvastatin complex during molecular dynamics simulation. <bold>(E)</bold> Hydrogen bond number variation of the CTNNB1-atorvastatin complex during molecular dynamics simulation. <bold>(F)</bold> Free energy contribution of key residues in the CTNNB1-atorvastatin complex.</p>
</caption>
<graphic xlink:href="fchem-14-1739085-g006.tif">
<alt-text content-type="machine-generated">Six scientific data visualizations labeled A to F display molecular dynamics analysis of CTNNB1-atorvastatin. Graphs show RMSD over time, gyration radius, solvent accessible surface area, root mean square fluctuation, hydrogen bond number, and a bar chart of residue energy contributions, each reflecting different biomolecular stability metrics over simulation time or residue index.</alt-text>
</graphic>
</fig>
<p>The CASP3-atorvastatin complex exhibited high structural stability during the simulation. The mean Root Mean Square Deviation (RMSD) of the complex was 0.27 &#xb1; 0.02&#xa0;nm, among which the RMSD of the ligand atorvastatin was low (0.11 &#xb1; 0.02&#xa0;nm), suggesting that the ligand remained in a stable state without positional drift (<xref ref-type="sec" rid="s13">Supplementary Figure S1A</xref>). The overall gyration radius of the protein was 1.79 &#xb1; 0.01&#xa0;nm with small fluctuations, indicating good overall conformational compactness of the protein molecule (<xref ref-type="sec" rid="s13">Supplementary Figure S1B</xref>). The SASA was 122.85 &#xb1; 3.20&#xa0;nm<sup>2</sup> (<xref ref-type="sec" rid="s13">Supplementary Figure S1C</xref>). The mean Root Mean Square Fluctuation (RMSF) of the protein was 0.12 &#xb1; 0.09&#xa0;nm, reflecting low overall flexibility of the residues and high stability in the binding site region (<xref ref-type="sec" rid="s13">Supplementary Figure S1D</xref>). Hydrogen bond analysis showed that the complex formed an average of four protein-ligand hydrogen bonds, which provided electrostatic stabilization and spatial positioning for ligand binding (<xref ref-type="sec" rid="s13">Supplementary Figure S1E</xref>). Results of energy decomposition revealed that both hydrophobic interactions (&#x394;VDWAALS &#x3d; &#x2212;40.84 &#xb1; 1.89&#xa0;kJ/mol) and electrostatic interactions (&#x394;Eelec &#x3d; &#x2212;38.44 &#xb1; 1.13&#xa0;kJ/mol) made significant contributions to the binding energy. The final total free energy (&#x394;Total) was &#x2212;33.03 &#xb1; 1.36&#xa0;kJ/mol, indicating a spontaneous and stable thermodynamic process (<xref ref-type="sec" rid="s13">Supplementary Figure S1F</xref>).</p>
</sec>
<sec id="s3-5">
<label>3.5</label>
<title>Cell viability assay</title>
<p>To investigate the potential neurotoxic effect of atorvastatin in the context of DPN, we evaluated its impact on RSC 96 cell viability under high glucose conditions, which mimic the diabetic milieu. As shown in (<xref ref-type="fig" rid="F7">Figures 7A,B</xref>), atorvastatin significantly inhibited cell viability in a time- and dose-dependent manner. Compared to the control group, a statistically significant reduction in cell viability was observed at concentrations as low as 20&#xa0;&#x3bc;M after 24&#xa0;h, an effect that was markedly enhanced at 48&#xa0;h. Cell viability declined precipitously with increasing atorvastatin concentrations, particularly above 40&#xa0;&#x3bc;M.</p>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption>
<p>Atorvastatin enhances TNF&#x3b1; release and NF-&#x3ba;B activation in high glucose&#x2013;treated RSC96 cells. <bold>(A,B)</bold> Cell viability measured by CCK-8 after 24&#xa0;h <bold>(A)</bold> or 48&#xa0;h <bold>(B)</bold> exposure to high glucose (HG) with increasing concentrations of atorvastatin (ATV; 5&#x2013;320&#xa0;&#x3bc;M). <bold>(C)</bold> TNF&#x3b1; levels in culture supernatants measured by ELISA in normal glucose (NG) or HG conditions with/without ATV; LPS was used as a positive control. <bold>(D)</bold> Representative immunoblots showing p-NF-&#x3ba;B p65 (Ser536), total p65, and &#x03B2;-actin. <bold>(E)</bold> Densitometric quantification of the p-p65 (Ser536)/p65 ratio in NG, HG, and HG-treated cells with ATV and/or the TNF signaling inhibitor R-7050. Data are presented as mean &#xb1; SD; each dot represents an independent replicate. Statistical significance is indicated in the panels (&#x2a;p &#x3c; 0.05, &#x2a;&#x2a;p &#x3c; 0.01, &#x2a;&#x2a;&#x2a;p &#x3c; 0.001; ns, not significant).</p>
</caption>
<graphic xlink:href="fchem-14-1739085-g007.tif">
<alt-text content-type="machine-generated">Figure with five panels labeled A to E. Panel A is a bar graph showing 24-hour cell viability percentages across control, HG, and increasing concentrations of HMG, with higher doses reducing viability significantly. Panel B is a bar graph of 48-hour cell viability, also showing dose-dependent decreases. Panel C is a bar graph displaying TNF-alpha levels in different treatment groups, with the HG&#x002B;LPS group significantly elevated. Panel D is a western blot image with bands for p-P65, P65, and beta-actin for each treatment group. Panel E is a bar graph showing the relative density of phosphorylated P65 to total P65, with increased values in the HG&#x002B;ATV and HG&#x002B;R-7050 groups.</alt-text>
</graphic>
</fig>
</sec>
<sec id="s3-6">
<label>3.6</label>
<title>Enzyme-linked immunosorbent assay</title>
<p>At 48&#xa0;h, HG (30&#xa0;mM) was associated with increased TNF&#x3b1; secretion compared with NG (5.5&#xa0;mM). Under NG conditions, atorvastatin (40&#xa0;&#x3bc;M) showed limited/no marked effect on TNF&#x3b1;, whereas under HG conditions, atorvastatin co-treatment was associated with a further increase in TNF&#x3b1; (<xref ref-type="fig" rid="F7">Figure 7C</xref>). Overall, these data suggest that atorvastatin exposure is associated with increased TNF&#x3b1; levels under high-glucose conditions, which may be relevant to inflammatory responses in DPN.</p>
</sec>
<sec id="s3-7">
<label>3.7</label>
<title>Western blot</title>
<p>To further examine whether inflammatory signaling was engaged under hyperglycemic conditions, we assessed NF-&#x3ba;B activation by measuring p65 phosphorylation (Ser536). As shown in <xref ref-type="fig" rid="F7">Figure 7D</xref>, high glucose alone increased p-p65 compared with NG, accompanied by a higher p-p65/p65 ratio (<xref ref-type="fig" rid="F7">Figure 7E</xref>). Under HG conditions, atorvastatin treatment led to a further rise in p-p65, resulting in the highest p-p65/p65 ratio among the tested groups. Notably, co-treatment with the TNF signaling inhibitor R-7050 attenuated the HG &#x2b; ATV&#x2013;associated increase in p65 phosphorylation, bringing the p-p65/p65 ratio closer to the HG level. R-7050 alone under HG conditions did not markedly elevate p65 phosphorylation compared with HG. Together, these results are consistent with the involvement of TNF/NF-&#x3ba;B&#x2013;related inflammatory signaling in the cellular response to atorvastatin under hyperglycemic stress.</p>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<label>4</label>
<title>Discussion</title>
<p>DPN causes nerve pain and disrupts patients&#x2019; daily life. Its characteristic pathological changes include axonal loss and regeneration, myelin abnormalities and demyelination (<xref ref-type="bibr" rid="B29">Jack and Wright, 2012</xref>). Without early treatment, it can lead to foot ulcers, then gangrene, and even amputation (<xref ref-type="bibr" rid="B68">Yu, 2021</xref>). Dyslipidemia is a major risk factor for DPN in type 2 diabetes (<xref ref-type="bibr" rid="B20">Girach et al., 2006</xref>). Studies show that statins do more than lower lipids, they can also improve blood vessel function and reduce inflammation (<xref ref-type="bibr" rid="B11">Davis et al., 2008</xref>; <xref ref-type="bibr" rid="B50">Palinski, 2001</xref>; <xref ref-type="bibr" rid="B73">Zhou and Liao, 2010</xref>). This may help protect nerves and treat DPN. But epidemiological studies link statin use to a higher risk of neuropathy (<xref ref-type="bibr" rid="B10">Corrao et al., 2004</xref>). This study integrates network toxicology, single-cell RNA sequencing, molecular docking, and molecular dynamics simulations to systematically identify potential targets of atorvastatin-induced DPN, such as TNF, CTNNB1, and CASP3. Studies show TNF showed high network centrality and relatively favorable predicted interaction with atorvastatin in the docking/MD analyses. Based on these observations together with the <italic>in vitro</italic> readouts, our results are consistent with a potential involvement of TNF/TNF&#x3b1;-associated responses in atorvastatin-related cellular stress under the tested conditions.</p>
<p>In this study, GO and KEGG enrichment analyses identified TNF, CTNNB1, and CASP3 as key genes associated with the mechanism of atorvastatin-induced DPN. These targets were enriched in critical biological processes such as oxidative stress, neurotransmitter release, and lipid metabolism. Previous studies have indicated that lipophilic statins can induce mitochondrial damage through multiple mechanisms. This triggers oxidative stress, resulting in cellular injury (<xref ref-type="bibr" rid="B31">Kaufmann et al., 2006</xref>). Our findings are consistent with this pathway. KEGG analysis indicates that atorvastatin may promote DPN through the AGE-RAGE signaling pathway. Pathway activation recruits mDia1 and, through the PI3K/Akt axis, promotes NF-&#x3ba;B nuclear translocation to regulate downstream transcription. RAGE binding to A&#x3b2; peptides on the neuronal surface triggers NF-&#x3ba;B activation, inducing the release of macrophage colony-stimulating factor (M-CSF) and other pro-inflammatory cytokines. M-CSF further interacts with RAGE, amplifying oxidative stress and inflammatory responses (<xref ref-type="bibr" rid="B6">Bhattacharya et al., 2023</xref>; <xref ref-type="bibr" rid="B12">Derk et al., 2018</xref>). This pathway represents a potential mechanism for atorvastatin-induced DPN. We have centered our discussion on the connections between atorvastatin, its targets, and DPN, focusing on inflammation, oxidative stress, and metabolic disturbances to hypothesize potential underlying pathways. Molecular docking suggested that atorvastatin may form a plausible binding pose with TNF&#x3b1;, CTNNB1, and CASP3, and the predicted binding scores for TNF&#x3b1; were comparatively favorable. These computational results provide supportive, hypothesis-generating evidence for a possible interaction, but additional experimental work is required to determine whether such interactions translate into inflammatory/oxidative-stress changes and peripheral nerve injury <italic>in vivo</italic>. Notably, prior structural and biochemical studies have shown that small molecules can directly engage soluble TNF&#x3b1; and modulate its trimer stability, for example by accelerating subunit dissociation and thereby reducing receptor-competent TNF&#x3b1;. These reports support the general plausibility that low-molecular-weight ligands may interact with TNF&#x3b1;. Nevertheless, whether atorvastatin binds TNF&#x3b1; under physiological conditions and whether such binding leads to functional modulation remain to be determined, and our docking/MD results should be interpreted as hypothesis-generating (<xref ref-type="bibr" rid="B23">He et al., 2005</xref>).</p>
<p>TNF, a key inflammatory mediator, is associated with the pathological progression of neuropathy in type 2 diabetes (<xref ref-type="bibr" rid="B28">Hussain et al., 2013</xref>). Among its subtypes, TNF&#x3b1; serves as the central functional molecule within the TNF family and plays significant roles in neuroinflammation, apoptosis, and tumorigenesis (<xref ref-type="bibr" rid="B70">Zelov&#xe1; and Ho&#x161;ek, 2013</xref>). Meta-analyses of database studies have revealed that serum levels of TNF&#x3b1; are significantly elevated in patients with DPN compared to healthy controls and type 2 diabetic patients without DPN (<xref ref-type="bibr" rid="B45">Mu et al., 2017</xref>). Under hyperglycemic conditions, upregulated expression of inflammatory mediators including TNF&#x3b1; and NF-&#x3ba;B not only impairs mitochondrial function and neurotrophic support, but also damages microvascular integrity via protein kinase C activation and enhanced hexosamine pathway activity, accelerating the progression of peripheral neuropathy (<xref ref-type="bibr" rid="B42">Mendez et al., 1996</xref>; <xref ref-type="bibr" rid="B44">Morohoshi et al., 1996</xref>; <xref ref-type="bibr" rid="B60">Vlassara et al., 1988</xref>; <xref ref-type="bibr" rid="B65">Xue et al., 2021</xref>). Mechanistic studies demonstrate that modulating the TNF&#x3b1; pathway can ameliorate DPN. Xiaoke Bitong Capsule (XBC) has been shown to alleviate neuroinflammatory damage in model animals by suppressing TNF signaling (<xref ref-type="bibr" rid="B58">Tian et al., 2024</xref>). Photobiomodulation (PBM) therapy reduces pain and nerve injury by decreasing TNF&#x3b1; expression in the central nervous system (<xref ref-type="bibr" rid="B18">Ferreira et al., 2024</xref>). Mudan Granules used in clinical management of DPN, reported/predicted to interact with TNF&#x3b1; (<xref ref-type="bibr" rid="B39">Long et al., 2025</xref>). These findings support the relevance of TNF&#x3b1; in DPN treatment. The relationship between statins and DPN involves complex mechanisms. Studies indicate that atorvastatin at higher concentrations, may induce neurotoxicity through multiple pathways: they promote macrophage infiltration into adipose tissue, increasing TNF&#x3b1; production, and impair mitochondrial function by disrupting calcium homeostasis, inhibiting the electron transport chain, and inducing mitochondrial membrane potential collapse (<xref ref-type="bibr" rid="B21">Golbidi and Laher, 2014</xref>; <xref ref-type="bibr" rid="B47">Murinson et al., 2012</xref>; <xref ref-type="bibr" rid="B55">Sirvent et al., 2005</xref>). These alterations lead to reduced ROS clearance, increased electron leakage, and subsequent oxidative stress (<xref ref-type="bibr" rid="B15">Esposito et al., 1999</xref>; <xref ref-type="bibr" rid="B31">Kaufmann et al., 2006</xref>). Oxidative stress and TNF&#x3b1; expression form a vicious cycle, wherein ROS promotes TNF&#x3b1; generation via activation of pathways such as NF-&#x3ba;B, while elevated TNF&#x3b1; further exacerbates oxidative stress (<xref ref-type="bibr" rid="B27">Husain et al., 2015</xref>; <xref ref-type="bibr" rid="B49">Ozsoy et al., 2008</xref>). Additionally, statin-induced depletion of coenzyme Q10 not only compromises mitochondrial antioxidant capacity but also elevates circulating levels of inflammatory factors including TNF&#x3b1;, collectively contributing to peripheral nerve damage (<xref ref-type="bibr" rid="B4">Banach et al., 2015</xref>; <xref ref-type="bibr" rid="B14">Duberley et al., 2014</xref>; <xref ref-type="bibr" rid="B25">Hou et al., 2023</xref>). These mechanisms together constitute the molecular basis by which statins may induce or exacerbate DPN.</p>
<p>Neuropathic pain is a key clinical feature of DPN, and sensory neuron&#x2013;specific mechanisms are increasingly recognized. In line with the increasing focus on sensory neuron&#x2013;related mechanisms, transcriptomic profiling of human dorsal root ganglia (DRGs) from patients with painful DPN has reported an inflammatory gene signature (including macrophage-associated transcripts) together with reduced expression of multiple neuronal genes, suggesting that neuroimmune interactions within the ganglion may contribute to pain hypersensitivity. These human data provide a clinical context in which TNF/NF-&#x3ba;B&#x2013;related inflammatory signaling may be relevant, although they do not establish a direct causal link with atorvastatin exposure. VGLUT2-positive sensory neurons have been proposed as major carriers of peripheral nociceptive signaling to the spinal cord, and VGLUT2-associated changes have been reported in STZ-induced DPN models. Moreover, aberrant activation of the sTNF/TNFR1 axis in VGLUT2&#x2b; neurons has been implicated in neuroinflammatory regulation through NF-&#x3ba;B signaling. In this study, we provide <italic>in vitro</italic> support for involvement of the TNF/NF-&#x3ba;B pathway by showing increased phosphorylation of NF-&#x3ba;B p65 under HG &#x2b; ATV conditions and its attenuation by R-7050. However, VGLUT2 expression changes and TNF&#x2013;VGLUT2 relationships were not directly assessed here and warrant targeted validation in sensory neuron models and/or <italic>in vivo</italic> DPN settings (<xref ref-type="bibr" rid="B72">Zhang et al., 2024</xref>). Oxidative stress and inflammation are tightly linked in DPN pathogenesis. PRDX6 has been proposed as a redox-regulatory molecule with both antioxidant and anti-inflammatory properties and may represent a candidate node connecting ROS homeostasis with TNF/NF-&#x3ba;B signaling. In the present study, we provided experimental support for activation of the TNF/NF-&#x3ba;B pathway by showing increased p65 phosphorylation under HG &#x2b; ATV conditions and its attenuation by R-7050. However, PRDX6 expression/activity (GPx/iPLA2) and its potential relationship with TNF/NF-&#x3ba;B activation were not examined and warrant targeted investigation in future work (<xref ref-type="bibr" rid="B7">Cao et al., 2022</xref>).</p>
<p>CTNNB1 encodes a multifunctional protein that is critically involved in cellular adhesion, signal transduction, and proliferation. It is highly expressed in brain regions such as the cerebral cortex, hippocampus, and cerebellum, playing a pivotal role in early brain development and has been strongly implicated in neurodevelopmental disorders, including intellectual disability, schizophrenia, and autism spectrum disorder (<xref ref-type="bibr" rid="B75">Zhuang et al., 2023</xref>).Pathogenic variants in the CTNNB1 gene are also associated with the pathogenesis of primary aldosteronism(PA) (<xref ref-type="bibr" rid="B57">Teo et al., 2015</xref>). In PA, adrenal overproduction of aldosterone leads to dyslipidemia, a key risk factor for DPN, suggesting a potential mechanism whereby CTNNB1 may contribute to DPN through the modulation of lipid metabolism (<xref ref-type="bibr" rid="B54">Seidel et al., 2019</xref>). At the molecular level, CTNNB1 acts as a central effector and transcriptional co-activator within the canonical Wnt signaling pathway (<xref ref-type="bibr" rid="B38">Liu et al., 2022</xref>). Within the hyperglycemic milieu, the Wnt pathway drives DPN progression through its regulation of Schwann cell apoptosis; pathway activation promotes cell immortalization, and its inhibition conversely compromises cell viability (<xref ref-type="bibr" rid="B37">Liu et al., 2020</xref>). GSK3&#x3b2; serves as a critical node, bridging the Wnt and PI3K/AKT signaling pathways to indirectly regulate Schwann cell apoptosis and thereby influence DPN pathogenesis (<xref ref-type="bibr" rid="B36">Liu et al., 2016</xref>). Based on these findings, we hypothesize that atorvastatin may contribute to DPN development by targeting CTNNB1. Furthermore, crosstalk exists between TNF&#x3b1; and &#x3b2;-catenin signaling; TNF&#x3b1; activates the &#x3b2;-catenin pathway via a signaling cascade initiated through the TNFR1 death domain, thereby promoting adipogenesis (<xref ref-type="bibr" rid="B9">Cawthorn et al., 2007</xref>; <xref ref-type="bibr" rid="B32">Kramer et al., 2023</xref>). This suggests a plausible mechanism through which TNF&#x3b1; may also accelerate the progression of DPN.</p>
<p>CASP3 serves as a pivotal executioner protease in the apoptotic pathway. In diabetic kidney disease (DKD) models, elevated CASP3 levels are closely associated with enhanced oxidative stress and inflammatory apoptosis (<xref ref-type="bibr" rid="B69">Yu et al., 2025</xref>). This enzyme executes its function through proteolytic cleavage of key substrates including poly(ADP-ribose) polymerase (PARP) (<xref ref-type="bibr" rid="B52">Salvesen and Dixit, 1997</xref>). Pathologically, CASP3 contributes to neurodegenerative processes, where its pharmacological inhibition effectively reverses HIV-1-induced TDP-43 aggregation and associated neurotoxicity (<xref ref-type="bibr" rid="B67">Yang et al., 2024</xref>). In DPN, Schwann cell apoptosis represents a central pathological event, and inhibition of activated CASP3 can partially ameliorate both autophagy suppression and apoptotic death in these cells (<xref ref-type="bibr" rid="B71">Zhang et al., 2021</xref>). Furthermore, <italic>in vitro</italic> studies confirm that atorvastatin triggers mitochondrial cytochrome c release, subsequently activating CASP3, which then cleaves essential proteins involved in RNA splicing, DNA repair, and other critical cellular processes, ultimately inducing apoptotic cell death (<xref ref-type="bibr" rid="B41">McIlwain et al., 2013</xref>; <xref ref-type="bibr" rid="B51">Panou et al., 2024</xref>). Based on current evidence, we propose a mechanistic hypothesis wherein atorvastatin promotes DPN progression via CASP3 activation: atorvastatin directly targets mitochondria, disrupting membrane integrity and inducing cytochrome c release into the cytosol. This process activates the caspase cascade, upregulating the &#x201c;executioner&#x201d; CASP3, which subsequently triggers apoptosis in peripheral neurons or glial cells (such as Schwann cells), thereby accelerating DPN pathogenesis.</p>
<p>From the perspective of neuronal excitability regulation, voltage-gated sodium channels (VGSCs) occupy a pivotal position in action potential propagation and represent crucial therapeutic targets for chronic pain management (<xref ref-type="bibr" rid="B5">Bennett et al., 2019</xref>). In DPN, TNF&#x3b1; has been demonstrated to directly activate the Nav1.7 subtype of sodium channels, thereby contributing to the development of neuropathic pain (<xref ref-type="bibr" rid="B26">Huang et al., 2014</xref>). Concurrently, disruption of calcium homeostasis plays an essential role in disease pathogenesis (<xref ref-type="bibr" rid="B17">Fernyhough and Calcutt, 2010</xref>). Downregulation of the mitochondrial calcium uniporter (MCU) compromises cellular calcium buffering, exacerbates oxidative stress, and promotes calcium influx, collectively facilitating apoptosis through both direct signaling and indirectly via induction of mitochondrial dysfunction (<xref ref-type="bibr" rid="B30">Jiang et al., 2025</xref>; <xref ref-type="bibr" rid="B48">Osmanl&#x131;o&#x11f;lu and Naz&#x131;ro&#x11f;lu, 2024</xref>). Sustained calcium overload further activates the mitochondrial permeability transition pore (mPTP), causing collapse of the mitochondrial membrane potential and cytochrome c release, which initiates the caspase-dependent apoptotic cascade (<xref ref-type="bibr" rid="B34">Li et al., 1997</xref>). Taken together, our analyses suggest that atorvastatin exposure is associated with cellular stress/injury-related signals under the tested experimental conditions, and TNF emerged as a prioritized candidate target from the integrated analyses. As a selective, competitive HMG-CoA reductase inhibitor, atorvastatin is widely used to regulate hyperlipidemia. Its lipophilic nature allows broad distribution in the body and direct access to HMG-CoA reductase, making it a preferred clinical choice (<xref ref-type="bibr" rid="B22">Haj Hussein et al., 2022</xref>). Although the pathogenic mechanism of DPN remains unclear, extensive clinical data indicate that DPN can be triggered by mild inflammation, intraepidermal nerve fiber degeneration, impaired blood supply, hyperglycemic toxicity, and autoimmune disorders. Among these, low-grade autoinflammation caused by hyperglycemia, mitochondrial dysfunction, and dyslipidemia is a significant contributing factor. Thus, as a lipid-lowering agent, atorvastatin has the potential to mitigate the onset of DPN. However, clinical applications have revealed that some patients developed peripheral neuropathy&#x2014;such as limb numbness, paresthesia, and burning pain&#x2014;after taking statins (<xref ref-type="bibr" rid="B46">Mulchandani et al., 2018</xref>). Our team employed network toxicology and molecular docking to identify potential interaction targets between atorvastatin and DPN. Key targets were screened and their relevance demonstrated, elucidating the mechanistic basis of atorvastatin&#x2019;s toxic effects on DPN.</p>
<p>To validate the predictions from network toxicology and molecular docking experiments, and to further elucidate the association between atorvastatin-induced neurotoxicity and the TNF&#x3b1; signaling pathway, we conducted cell-based assays. These experiments were performed under high-glucose conditions to simulate the diabetic microenvironment, using RSC 96 cells as a representative model for neural cells. ELISA and CCK-8 assays demonstrated that in a high-glucose environment, atorvastatin-treated RSC 96 cells exhibited significantly elevated levels of TNF&#x3b1;. Furthermore, under high-glucose conditions, atorvastatin exerted cytotoxic effects on RSC 96 cells in a time- and dose-dependent manner. These findings are consistent with atorvastatin-associated cytotoxicity under high-glucose conditions and suggest a possible association with TNF&#x3b1; elevation. However, TNF&#x3b1; blockade/knockdown studies are required to determine whether TNF&#x3b1; is necessary for the observed effects.</p>
<p>The findings of this study may provide useful information for future investigations into atorvastatin-related cellular responses in the context of DPN. However, several limitations should be noted. First, our network toxicology and molecular docking analyses are mainly based on predicted molecular interactions and cellular-level evidence, and therefore may not fully capture the complexity of <italic>in vivo</italic> pathophysiology. In addition, bioinformatics-based target identification depends on the completeness and annotation quality of public databases and on the chosen filtering criteria; thus, false positives/negatives cannot be fully excluded, and enrichment results should be interpreted as hypothesis-generating rather than definitive. Likewise, molecular docking and molecular dynamics simulations provide <italic>in silico</italic> estimates of plausible binding poses and interaction stability under simplified assumptions. Predicted docking scores/energies do not directly demonstrate physical binding in a biological milieu, nor do they establish functional modulation of the target. Therefore, any inferred &#x201c;modulatory role&#x201d; from ligand&#x2013;protein interactions should be considered preliminary and requires orthogonal experimental validation (e.g., biophysical binding assays and/or target perturbation studies. In addition, no <italic>in vivo</italic> DPN model was included in the present study; therefore, the translational relevance of the observed associations remains to be determined and warrants validation in established diabetic neuropathy animal models (e.g., STZ-induced or db/db models) with functional and pathological endpoints. Neuron-specific validation, including assessment of VGLUT2 expression and potential TNF&#x2013;VGLUT2 interactions relevant to pain signaling, was not performed in the current study and should be addressed in future work. Effects observed under controlled conditions may be amplified or attenuated in intact organisms, and clinical confounding factors such as patient heterogeneity (e.g., genetic background, duration of diabetes, glycemic control status) and concomitant medications cannot be addressed in the current design. Furthermore, we did not systematically investigate dose&#x2013;response relationships or temporal dynamics. <italic>In vitro</italic> experiments often use relatively high drug concentrations to elicit measurable changes within a practical timeframe, which may not reflect chronic exposure conditions in patients. We also did not assess PRDX6 expression/activity (GPx/iPLA2) or integrate oxidative stress readouts (e.g., ROS) with TNF/NF-&#x3ba;B signaling, and therefore the proposed redox&#x2013;inflammation crosstalk remains to be tested. Importantly, we did not perform TNF&#x3b1; blockade/knockdown experiments in this study; therefore, a causal requirement of TNF&#x3b1; for the observed cytotoxicity cannot be established, and future work using pharmacological inhibition or siRNA will be necessary.</p>
</sec>
<sec sec-type="conclusion" id="s5">
<label>5</label>
<title>Conclusion</title>
<p>This study combined network toxicology, scRNA-seq analysis, molecular docking/molecular dynamics simulations, and <italic>in vitro</italic> experiments to explore potential atorvastatin-associated cellular responses relevant to diabetic peripheral neuropathy (DPN). TNF&#x3b1;, CTNNB1, and CASP3 emerged as prioritized candidates from the integrated computational analyses, with enrichment in pathways related to inflammation and oxidative stress. The external scRNA-seq dataset suggested that these genes are expressed across multiple cell types, including a neuronal/neuronal-like cluster and other cells involved in tissue homeostasis. <italic>In silico</italic> docking/MD analyses indicated a plausible interaction between atorvastatin and these targets, with TNF&#x3b1; showing relatively strong predicted affinity; however, such interactions should be considered hypothesis-generating and require orthogonal validation. In high glucose&#x2013;challenged RSC96 Schwann cells, atorvastatin was associated with reduced cell viability and increased TNF&#x3b1;-related inflammatory readouts, and our downstream assessment of NF-&#x3ba;B signaling (p65 phosphorylation) provided supportive evidence that TNF/NF-&#x3ba;B activation may be involved under the tested <italic>in vitro</italic> conditions.</p>
<p>Overall, our findings are consistent with the possibility that atorvastatin may contribute to DPN-relevant cellular stress through TNF/TNF&#x3b1;-associated inflammatory signaling, while additional pathways (including those related to oxidative stress and apoptosis) may also participate and should be examined in future work. These results may help motivate further mechanistic and translational studies aimed at evaluating atorvastatin safety in diabetic neuropathy settings, including <italic>in vivo</italic> validation with functional endpoints. Given the predominantly computational and <italic>in vitro</italic> design, conclusions regarding causality and clinical implications should be drawn cautiously.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s6">
<title>Data availability statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article.</p>
</sec>
<sec sec-type="ethics-statement" id="s7">
<title>Ethics statement</title>
<p>Ethical approval was not required for the studies on animals in accordance with the local legislation and institutional requirements because only commercially available established cell lines were used.</p>
</sec>
<sec sec-type="author-contributions" id="s8">
<title>Author contributions</title>
<p>HY: Data curation, Methodology, Supervision, Conceptualization, Formal analysis, Project administration, Validation, Funding acquisition, Visualization, Software, Writing &#x2013; original draft, Writing &#x2013; review and editing. JC: Project administration, Data curation, Methodology, Formal Analysis, Supervision, Validation, Visualization, Conceptualization, Software, Writing &#x2013; original draft, Writing &#x2013; review and editing, Resources, Investigation. PZ: Data curation, Methodology, Conceptualization, Visualization, Software, Writing &#x2013; original draft, Writing &#x2013; review and editing. MY: Visualization, Formal Analysis, Project administration, Data curation, Writing &#x2013; original draft, Software, Writing &#x2013; review and editing, Validation, Conceptualization, Resources, Supervision, Investigation, Methodology. SM: Investigation, Writing &#x2013; original draft, Conceptualization, Software, Visualization, Data curation, Resources, Writing &#x2013; review and editing, Formal Analysis. YH: Supervision, Writing &#x2013; original draft, Software, Conceptualization, Writing &#x2013; review and editing, Investigation, Methodology, Data curation. XW (7th author): Investigation, Writing &#x2013; original draft, Writing &#x2013; review and editing, Formal Analysis, Conceptualization. JW: Formal Analysis, Writing &#x2013; original draft, Data curation, Software, Visualization. XW (9th author): Writing &#x2013; review and editing, Writing &#x2013; original draft, Formal Analysis. XW (10th author): Resources, Validation, Visualization, Project administration, Supervision, Funding acquisition, Writing &#x2013; original draft, Formal Analysis, Methodology, Data curation, Investigation, Writing &#x2013; review and editing, Software, Conceptualization.</p>
</sec>
<ack>
<title>Acknowledgements</title>
<p>The smooth progress of this research would not have been possible without the significant support provided by the following platforms and databases. We hereby express our sincere gratitude to their development and maintenance teams: PubChem, TOX, STITCH, SwissTargetPrediction, TTD, OMIM, GeneCards, PanglaoDB, PDB, PubMed, China National Knowledge Infrastructure (CNKI), and Web of Science (WOS). Their openly shared and invaluable resources have laid a crucial data foundation for this study. Meanwhile, we would like to acknowledge the CB-Dock2 platform for its core technical support in molecular docking analysis; the efficiency of this tool was vital for obtaining the relevant experimental results of this research. Additionally, R software and Cytoscape software played irreplaceable roles in data visualization and the construction and analysis of biological networks, providing strong support for data interpretation and mechanism discussion in this study.</p>
</ack>
<sec sec-type="COI-statement" id="s10">
<title>Conflict of interest</title>
<p>The author(s) declared that this work was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="ai-statement" id="s11">
<title>Generative AI statement</title>
<p>The author(s) declared that generative AI was used in the creation of this manuscript. During the development of this work, the authors utilized DeepSeek, Doubao, and MetaGPT (three AI-powered assistants): DeepSeek assisted in literature review collation and initial experimental design drafting; Doubao supported clarifying research logic and organizing result analysis frameworks; MetaGPT aided in refining manuscript language expression and standardizing reference formats. After using these tools, the authors have thoroughly reviewed, edited, and revised all content as necessary, and take full responsibility for the accuracy and originality of the published article.</p>
<p>Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.</p>
</sec>
<sec sec-type="disclaimer" id="s12">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec sec-type="supplementary-material" id="s13">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fchem.2026.1739085/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fchem.2026.1739085/full&#x23;supplementary-material</ext-link>
</p>
<supplementary-material>
<label>SUPPLEMENTARY FIGURE 1</label>
<caption>
<p>
<bold>(A)</bold> Root Mean Square Deviation (RMSD) curve of the CASP3-atorvastatin complex during molecular dynamics simulation. <bold>(B)</bold> Radius of gyration curve of the CASP3-atorvastatin complex during molecular dynamics simulation. <bold>(C)</bold> Solvent Accessible Surface Area (SASA) curve of the CASP3-atorvastatin complex during molecular dynamics simulation. <bold>(D)</bold> Root Mean Square Fluctuation (RMSF) curve of the CASP3-atorvastatin complex during molecular dynamics simulation. <bold>(E)</bold> Hydrogen bond number variation of the CASP3-atorvastatin complex during molecular dynamics simulation. <bold>(F)</bold> Free energy contribution of key residues in the CASP3-atorvastatin complex.</p>
</caption>
</supplementary-material>
<supplementary-material xlink:href="Image1.jpeg" id="SM1" mimetype="application/jpeg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Image2.jpeg" id="SM2" mimetype="application/jpeg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
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<fn-group>
<fn fn-type="custom" custom-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/612110/overview">Cheng-Peng Sun</ext-link>, Dalian Medical University, China</p>
</fn>
<fn fn-type="custom" custom-type="reviewed-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/2381764/overview">Marvin Soriano-ursua</ext-link>, Escuela Superior de Medicina (IPN), Mexico</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/2635566/overview">Yitong Zhang</ext-link>, Beijing Institute of Technology, China</p>
</fn>
</fn-group>
</back>
</article>