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<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Chem.</journal-id>
<journal-title>Frontiers in Chemistry</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Chem.</abbrev-journal-title>
<issn pub-type="epub">2296-2646</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
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<article-meta>
<article-id pub-id-type="publisher-id">1473769</article-id>
<article-id pub-id-type="doi">10.3389/fchem.2024.1473769</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Chemistry</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Tetraarylpyrrolo[3,2-<italic>b</italic>]pyrrole-BODIPY dyad: a molecular rotor for FRET-based viscosity sensing</article-title>
<alt-title alt-title-type="left-running-head">Agrawal et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fchem.2024.1473769">10.3389/fchem.2024.1473769</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Agrawal</surname>
<given-names>Richa</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Gorai</surname>
<given-names>Sudip</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Yadav</surname>
<given-names>Sunil Suresh</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2806068/overview"/>
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<contrib contrib-type="author">
<name>
<surname>Wadawale</surname>
<given-names>Amey P.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
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<contrib contrib-type="author" corresp="yes">
<name>
<surname>Mula</surname>
<given-names>Soumyaditya</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
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<aff id="aff1">
<sup>1</sup>
<institution>Bio-Organic Division</institution>, <institution>Bhabha Atomic Research Centre</institution>, <addr-line>Mumbai</addr-line>, <country>India</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Homi Bhabha National Institute</institution>, <addr-line>Mumbai</addr-line>, <country>India</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>National Centre for Nanoscience and Nanotechnology</institution>, <institution>University of Mumbai</institution>, <addr-line>Mumbai</addr-line>, <country>India</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Chemistry Division</institution>, <institution>Bhabha Atomic Research Centre</institution>, <addr-line>Mumbai</addr-line>, <country>India</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/2533647/overview">Eusebio Juaristi</ext-link>, Center for Research and Advanced Studies, National Polytechnic Institute of Mexico (CINVESTAV), Mexico</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/2810943/overview">Arturo Jim&#xe9;nez S&#xe1;nchez</ext-link>, National Autonomous University of Mexico, Mexico</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/745218/overview">Chathura S. Abeywickrama</ext-link>, University of Connecticut, United States</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Soumyaditya Mula, <email>smula@barc.gov.in</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>10</day>
<month>10</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>12</volume>
<elocation-id>1473769</elocation-id>
<history>
<date date-type="received">
<day>31</day>
<month>07</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>11</day>
<month>09</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Agrawal, Gorai, Yadav, Wadawale and Mula.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Agrawal, Gorai, Yadav, Wadawale and Mula</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>With the aim to develop a FRET-based viscosity sensor, two dyad molecules, <bold>4</bold> and <bold>5</bold>, comprising tetraarylpyrrolo[3,2-<italic>b</italic>]pyrrole (TAPP) (donor) and naked boron-dipyrromethene (BODIPY) dyes (acceptor), were designed. Dyads were synthesized via acid-catalyzed multicomponent reactions followed by Sonogashira coupling. In both dyads, the BODIPY and TAPP moieties are linked through phenylethynyl groups, which allow free rotation of the BODIPY dyes; that is, they can act as molecular rotors. This was supported by X-ray crystallographic and DFT-optimized structures. Spectroscopic studies also confirmed the presence of both TAPP and BODIPY dyes in dyads with no electronic interactions that are suitable for fluorescence resonance energy transfer (FRET). Very high energy transfer efficiency (ETE &#x3e;99%) from the donor TAPP moiety to the acceptor BODIPY moiety on excitation at the TAPP part was observed. However, due to the non-fluorescent nature of naked BODIPY dyes, no fluorescence emission was observed from the BODIPY moiety in both dyads. With increasing solvent viscosities, emission from the BODIPY moieties increases due to the restricted rotation of the BODIPY moieties. Plotting the logarithms of the fluorescent intensity of dyad <bold>5</bold> and the viscosity of the solution showed a good linear correlation obeying a F&#xf6;rster&#x2013;Hoffmann equation. Non-fluorescent dyad <bold>5</bold> in methanol became greenish-yellow fluorescent in a methanol/glycerol (1:1) solvent. Furthermore, with an increase in the temperature of the methanol/glycerol (1:1) system, as the viscosity decreases, the fluorescence also starts decreasing. Thus, dyad <bold>5</bold> is capable of sensing the viscosity of the medium via a FRET-based &#x201c;Off-On&#x201d; mechanism. This type of viscosity sensor with a very large pseudo-Stokes shift and increased sensitivity will be useful for advancing chemo-bio sensing and imaging applications.</p>
</abstract>
<abstract abstract-type="graphical">
<title>Graphical Abstract</title>
<p>
<fig>
<caption>
<p>TOC.</p>
</caption>
<graphic xlink:href="FCHEM_fchem-2024-1473769_wc_abs.tif"/>
</fig>
</p>
</abstract>
<kwd-group>
<kwd>tetraarylpyrrolo[3,2-<italic>b</italic>]pyrrole</kwd>
<kwd>BODIPY</kwd>
<kwd>dyad</kwd>
<kwd>viscosity sensor</kwd>
<kwd>molecular rotor</kwd>
<kwd>FRET</kwd>
</kwd-group>
<contract-sponsor id="cn001">Department of Atomic Energy, Government of India<named-content content-type="fundref-id">10.13039/501100001502</named-content>
</contract-sponsor>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Organic Chemistry</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Molecular dyads with a combination of a donor chromophore (absorbs at lower wavelengths) and an acceptor molecule (absorbs at higher wavelengths) have diverse applications in different fields ranging from artificial light-harvesting to advanced biotechnology (<xref ref-type="bibr" rid="B1">Altan Bozdemir et al., 2011</xref>; <xref ref-type="bibr" rid="B35">Odobel et al., 2013</xref>). A dyad with suitably matched optical properties of the donor and acceptor can act as a fluorescence resonance energy transfer (FRET) system. In this type of system, photoexcitation of the donor will lead to the transfer of its excitation energy to the acceptor, showing emission from the acceptor molecule at a higher wavelength (<xref ref-type="bibr" rid="B26">Lin et al., 2010</xref>). The difference between the wavelengths of emission maximum of the acceptor and the absorption maximum of the donor is a pseudo-Stokes shift, which is higher than a Stokes shift of the acceptor. These kinds of systems are important for energy tunneling in artificial light-harvesting antennas. In addition, the enhanced pseudo-Stokes shifts of these dyads are highly useful for developing chemical sensors (<xref ref-type="bibr" rid="B13">Guliyev et al., 2009</xref>; <xref ref-type="bibr" rid="B37">Qu et al., 2012</xref>) and advanced bio-imaging agents (<xref ref-type="bibr" rid="B42">Ulrich et al., 2005</xref>; <xref ref-type="bibr" rid="B47">Wu et al., 2009</xref>; <xref ref-type="bibr" rid="B46">Wu et al., 2020</xref>).</p>
<p>Viscosity is an important cellular parameter used to control the intracellular chemical signaling interactions of biomolecules and the diffusion of active metabolites within cellular systems. Intracellular viscosity changes are indicative of different diseases, such as hypertension, diabetes (<xref ref-type="bibr" rid="B34">Nadiv et al., 1994</xref>), atherosclerosis (<xref ref-type="bibr" rid="B9">Deliconstantinos et al., 1995</xref>), and Alzheimer&#x2019;s disease (<xref ref-type="bibr" rid="B48">Zubenko et al., 1999</xref>). Consequently, finding novel techniques that could image subcellular viscosity in order to recognize problems linked to viscosity is immensely important. Thus, various viscosity sensors have been developed over the years (<xref ref-type="bibr" rid="B39">Su et al., 2017</xref>; <xref ref-type="bibr" rid="B24">Lee et al., 2018</xref>; <xref ref-type="bibr" rid="B30">Miao et al., 2019</xref>; <xref ref-type="bibr" rid="B29">Ma et al., 2020</xref>). The majority of these are fluorescence &#x201c;Off-On&#x201d; or &#x201c;On-Off&#x201d; types, and the accuracy of these sensors is limited by the self-absorption of the fluorophores. In that respect, the FRET-based system has a potential advantage because its large pseudo-Stokes shift will nullify the effect of self-absorption, and viscosity measurement depends on the relative orientation of the two independent chromophores where one (acceptor) molecule is sensitive and other (donor) is less sensitive towards viscosity response. Designing this type of FRET-based viscosity sensor requires a molecular pair as a dyad where the energy donor and acceptor are connected via a linker with an optimal distance.</p>
<p>Boron-dipyrromethene (BODIPY) dyes have emerged as a highly important class of dyes for numerous applications (<xref ref-type="bibr" rid="B28">Loudet and Burgess, 2007</xref>; <xref ref-type="bibr" rid="B33">Mula et al., 2008</xref>; <xref ref-type="bibr" rid="B6">Choudhary et al., 2024</xref>; <xref ref-type="bibr" rid="B31">Mula, 2024</xref>). This is because of their exceptional properties, like high molar absorptivity, high fluorescence, high photostability, and relatively easy customization (<xref ref-type="bibr" rid="B28">Loudet and Burgess, 2007</xref>; <xref ref-type="bibr" rid="B43">Ulrich et al., 2008</xref>). However, small Stokes shifts restrict their wide applicability in different applications, including chemo/biosensing and imaging. The majority of the chemo/bio-sensors and imaging agents developed using BODIPY dyes are &#x201c;Off-On&#x201d; or &#x201c;On-Off&#x201d; types (<xref ref-type="bibr" rid="B3">Boens et al., 2012</xref>; <xref ref-type="bibr" rid="B12">Gorai et al., 2022</xref>; <xref ref-type="bibr" rid="B7">Choudhary and Mula, 2023</xref>). A small Stokes shift makes the detection problematic in this kind of sensor mainly due to the self-absorption of the fluorescence light. Suitably designed dyads with large pseudo-Stokes shifts can be used for sensing purposes with enhanced sensitivity. Thus, the development of dyads with enhanced pseudo-Stokes shift along with high energy transfer efficiency (ETE) will be ideal for advanced sensing and imaging applications.</p>
<p>In the past, various BODIPY-based dyads were synthesized for solar energy harvesting purposes. In all these cases, BODIPYs have been extensively used both as energy donors and energy acceptors (<xref ref-type="bibr" rid="B14">Harriman et al., 2009</xref>; <xref ref-type="bibr" rid="B4">Bozdemir et al., 2010</xref>; <xref ref-type="bibr" rid="B32">Mula et al., 2010</xref>). Typically, BODIPYs have absorption in the green region (&#x223c;500&#xa0;nm), and tuning it to the blue region is hardly possible (<xref ref-type="bibr" rid="B16">Hee Kim and Kim, 2019</xref>). Thus, very often, polycyclic aromatic hydrocarbons (PAHs) like pyrene, perylene, anthracene, triptycene, fluorene, etc., are attached to the BODIPY core as blue energy donors. These donors absorb in the blue region (200&#x2013;400&#xa0;nm) and efficiently transfer their excitation energy to the BODIPY core, enhancing the pseudo-Stokes shifts of BODIPY dyes (<xref ref-type="bibr" rid="B42">Ulrich et al., 2005</xref>; <xref ref-type="bibr" rid="B17">Iehl et al., 2012</xref>; <xref ref-type="bibr" rid="B36">Porcu et al., 2022</xref>). These types of dyads could be highly useful as sensing/imaging agents. From a synthetic point of view, these PAHs are difficult to synthesize or functionalize. The development of custom-made dyads based on a PAH-BODIPY frame is always challenging. Thus, introducing new fluorophores with absorption, emission in the blue region along with easy synthesis and functionalization procedures will be a real game changer.</p>
<p>A new class of fluorescent dye, namely, tetraarylpyrrolo[3,2-<italic>b</italic>]pyrrole (TAPP) (<xref ref-type="fig" rid="F6">Chart 1</xref>), has been known since 2013 (<xref ref-type="bibr" rid="B19">Janiga et al., 2013</xref>; <xref ref-type="bibr" rid="B22">Krzeszewski et al., 2017</xref>). Recent developments showed that synthesizing these dyes is relatively easy compared to other PAHs, and importantly, there are ample scopes for post-functionalization of the TAPP core to synthesize advanced chromophores for diverse applications (<xref ref-type="bibr" rid="B18">Janiga et al., 2014</xref>; <xref ref-type="bibr" rid="B27">Liu et al., 2017</xref>; <xref ref-type="bibr" rid="B23">Krzeszewski et al., 2018</xref>). These dyes are being used for photochromic analysis of halocarbons, direct solvent probing via H-bonding interactions, two-photon absorption application, aggregation-induced emission, and development of resistive memory devices, MOFs, organic opto-electronics, and organic light-emitting diodes (OLEDs) (<xref ref-type="bibr" rid="B45">Wu et al., 2016</xref>; <xref ref-type="bibr" rid="B10">Dereka and Vauthey, 2017</xref>; <xref ref-type="bibr" rid="B20">Ji et al., 2017</xref>; <xref ref-type="bibr" rid="B22">Krzeszewski et al., 2017</xref>; <xref ref-type="bibr" rid="B25">Li et al., 2017</xref>; <xref ref-type="bibr" rid="B15">Hawes et al., 2018</xref>; <xref ref-type="bibr" rid="B44">Wang et al., 2018</xref>). TAPP has strong absorption at &#x223c;400&#xa0;nm and high blue emission (&#x223c;450&#xa0;nm) (<xref ref-type="bibr" rid="B41">Tasior et al., 2020</xref>). Superior photophysical properties and easy synthesis prompted us to use these dyes as blue energy donors in molecular dyads. As the TAPP molecules are blue energy donors, we have taken the naked BODIPY <bold>1</bold> (Chart 1) dye as an acceptor because (i) its absorption profile has reasonable overlap with the emission profile of TAPP and (ii) it shows a molecular rotor property (<xref ref-type="bibr" rid="B5">Chakraborty et al., 2021</xref>). Due to the molecular rotor property, naked BODIPY dyes are being used as viscosity sensors, where these dyes showed &#x201c;Off-On&#x201d; fluorescence sensing with an increase in viscosity of the medium (<xref ref-type="bibr" rid="B40">Sunahara et al., 2007</xref>). A narrow Stokes shift remains a problem for these sensors in accurately detecting analytes. In this respect, viscosity detection is anticipated to be much easier with enhanced sensitivity if the naked BODIPY dye can be used in a dyad-based molecular rotor system. Thus, we have designed two TAPP-BODIPY-based dyads where TAPP and naked BODIPY dyes are linked through the C2/C5 of the TAPP moiety using a phenylethynyl linker. This linker will allow these two chromophores to remain electronically separated, allowing the free rotations of the chromophores (<xref ref-type="fig" rid="F6">Chart 1</xref>). These dyads are expected to be non-fluorescent and to show enhanced fluorescence with increasing viscosity. In this report, the synthesis and characterization of two TAPP-BODIPY dyads are reported. Their photophysical properties and resonance energy transfer were investigated, and they showed highly efficient energy transfer from the TAPP to the BODIPY moiety. Finally, the potential application of these newly synthesized dyads as viscosity sensors is discussed.</p>
<fig id="F6" position="float">
<label>CHART 1</label>
<caption>
<p>Chemical structures of BODIPY <bold>1</bold> (acceptor), TAPP <bold>2</bold>, <bold>3</bold> (donor), and Dyads <bold>4</bold>, <bold>5</bold>.</p>
</caption>
<graphic xlink:href="fchem-12-1473769-g006.tif"/>
</fig>
</sec>
<sec sec-type="results|discussion" id="s2">
<title>Results and discussion</title>
<sec id="s2-1">
<title>Synthesis</title>
<p>Initially, the acceptor, BODIPY <bold>9,</bold> was synthesized. For the synthesis of BODIPY <bold>9</bold>, pyrrole (<bold>6</bold>) was condensed with <italic>p</italic>-iodo benzaldehyde (<bold>7</bold>) in the presence of a catalytic amount of acid to form corresponding dipyrromethane (<bold>8</bold>). DDQ was used to oxidize <bold>8</bold> followed by its complexation with BF<sub>3</sub>. OEt<sub>2</sub> furnished the acceptor BODIPY <bold>9</bold> (<xref ref-type="scheme" rid="sch1">Scheme 1</xref>).</p>
<fig id="sch1" position="float">
<label>SCHEME 1</label>
<caption>
<p>Synthesis of acceptor BODIPY <bold>9</bold>: Reaction conditions: <bold>(A)</bold> TFA (cat. amount), dry DCM, 25&#xb0;C, 12&#xa0;h; <bold>(B)</bold> DDQ, 25&#xb0;C, 4&#xa0;h; <bold>(C)</bold> NEt<sub>3</sub>, BF<sub>3</sub>. Et<sub>2</sub>O, 25&#xb0;C, 12&#xa0;h.</p>
</caption>
<graphic xlink:href="FCHEM_fchem-2024-1473769_wc_sch1.tif"/>
</fig>
<p>Next, the donor molecules TAPP <bold>2</bold> and <bold>3</bold> were synthesized via multicomponent condensation reactions. The acid-catalyzed reaction of <italic>p</italic>-methoxyaniline (<bold>10</bold>) and 4-((trimethylsilyl)ethynyl)benzaldehyde (<bold>12)</bold> formed the corresponding Schiff base, which was simultaneously condensed with 2,3-butanedione using Fe(ClO<sub>4</sub>)<sub>3</sub>.H<sub>2</sub>O as the catalyst to furnish TAPP <bold>13</bold>. In another effort, <italic>p</italic>-methylaniline (<bold>11</bold>) and 4-((trimethylsilyl)ethynyl)benzaldehyde (<bold>12</bold>) were condensed in an acid-catalyzed reaction to generate the Schiff base, which was further condensed with 2,3-butanedione to furnish TAPP <bold>14</bold> in good yield (<xref ref-type="bibr" rid="B41">Tasior et al., 2020</xref>). Then, both TAPP <bold>13</bold> and <bold>14</bold> were desilylated to obtain the corresponding TAPP <bold>2</bold> and <bold>3</bold>, respectively (<xref ref-type="scheme" rid="sch2">Scheme 2</xref>). All the dyes were characterized by NMR spectroscopy and mass spectrometric analyses. For example, in <sup>1</sup>H NMR spectrum of <bold>13</bold>, phenyl protons were resonated as four doublets of four proton integration each in the aromatic region. Characteristic singlets for C-3/6 protons of the TAPP moiety and the methoxy and trimethyl silyl groups were observed at 6.34&#xa0;ppm, 3.83&#xa0;ppm, and 0.23&#xa0;ppm, respectively, which confirmed the structure of <bold>13</bold> (<xref ref-type="sec" rid="s10">Supplementary Figure S5</xref>). The disappearance of a singlet for the trimethylsilyl groups at 0.23&#xa0;ppm and the appearance of a singlet at 3.08&#xa0;ppm for the acetylenic protons confirm the formation of TAPP <bold>3</bold> (<xref ref-type="sec" rid="s10">Supplementary Figure S11</xref>). Finally, the structures of TAPP <bold>2</bold> and <bold>3</bold> were confirmed by single-crystal X-ray crystallographic studies, as shown in <xref ref-type="fig" rid="F1">Figure 1</xref>. Crystal structures of TAPP <bold>2</bold> and <bold>3</bold> showed that the pyrrolo[3,2-<italic>b</italic>]pyrrole units are planar, but the four aryl units remain out of plane, making them electronically non-conjugated with the pyrrolo[3,2-<italic>b</italic>]pyrrole units.</p>
<fig id="sch2" position="float">
<label>SCHEME 2</label>
<caption>
<p>Synthesis of TAPP <bold>2</bold>, <bold>3</bold> and TAPP-BODIPY dyads <bold>4</bold>, <bold>5</bold>. Reaction conditions: <bold>(A)</bold> (i) AcOH: toluene, 50&#xb0;C, 1&#xa0;h; (ii) 2,3-butanedione, Fe(ClO<sub>4</sub>)<sub>3</sub>.H<sub>2</sub>O (6&#xa0;mol%), 50&#xb0;C, 12&#xa0;h; <bold>(B)</bold> K<sub>2</sub>CO<sub>3</sub>, MeOH, 25&#xb0;C, 6&#xa0;h; <bold>(C)</bold> BODIPY <bold>9</bold>, DIPA, <italic>trans</italic>-Pd(PPh<sub>3</sub>)<sub>2</sub>Cl<sub>2</sub> (10&#xa0;mol%), CuI (5&#xa0;mol%), 25&#xb0;C, dry THF, 12&#xa0;h.</p>
</caption>
<graphic xlink:href="FCHEM_fchem-2024-1473769_wc_sch2.tif"/>
</fig>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>X-ray crystal structures of TAPP <bold>2</bold> and <bold>3</bold>.</p>
</caption>
<graphic xlink:href="fchem-12-1473769-g001.tif"/>
</fig>
<p>Finally, Sonogashira coupling of BODIPY <bold>9</bold> with TAPP <bold>2</bold> and <bold>3</bold> separately furnished dyads <bold>4</bold> and <bold>5,</bold> respectively (<xref ref-type="scheme" rid="sch2">Scheme 2</xref>). The structures of both dyads were confirmed by NMR spectroscopy and mass spectrometry analyses. In the <sup>1</sup>H NMR spectrum of dyad <bold>4</bold>, all the characteristic peaks for both the TAPP <bold>2</bold> and BODIPY <bold>9</bold> moieties were present (<xref ref-type="fig" rid="F2">Figure 2</xref>; <xref ref-type="sec" rid="s10">Supplementary Figure S15</xref>). The acetylenic proton signal of the TAPP <bold>2</bold> moiety was absent, which confirmed the coupling of the two moieties through the acetylenic bond.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>
<sup>1</sup>H NMR (500&#xa0;MHz) spectrum of dyad <bold>4</bold> in CDCl<sub>3</sub>.</p>
</caption>
<graphic xlink:href="fchem-12-1473769-g002.tif"/>
</fig>
</sec>
<sec id="s2-2">
<title>DFT calculations</title>
<p>Orientations of the donors and acceptors in the dyads are important for efficient energy transfer between them. Thus, DFT studies were done to optimize the ground state geometries of the dyads <bold>4</bold> and <bold>5</bold> using the B3LYP/6-31G level of theory. These are shown in <xref ref-type="table" rid="T1">Table 1</xref>; <xref ref-type="sec" rid="s10">Supplementary Table S4</xref>. In both dyads, the pyrrolo-pyrrole units are planar as expected, and the four attached aryl rings remain twisted with respect to the pyrrolo-pyrrole plane. Similar observations were found from the X-ray crystallographic structures discussed <italic>vide supra</italic>. Furthermore, BODIPY moieties are planar, but the attached 8-phenyl groups are twisted with respect to the BODIPY core. Thus, as a whole, in both dyads, the donor TAPP moieties and the acceptor BODIPYs are twisted with respect to each other; that is, they are not electronically conjugated. This suggests that energy transfer is possible in both dyads <bold>4</bold> and <bold>5</bold>. The HOMO-LUMO structures and energies of both dyads are also calculated and tabulated in <xref ref-type="table" rid="T1">Table 1</xref>; <xref ref-type="sec" rid="s10">Supplementary Table S4</xref>. None of the FMO&#x2019;s electron densities are distributed over both chromophores. The electron densities in the HOMOs of both dyads are located on the pyrrolo-pyrrole unit and shifted towards the BODIPY core in LUMOs. These also indicate that the TAPP and BODIPY moieties are not conjugated; thus, energy transfer is feasible in both dyads, as discussed below.</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Ground-state optimized structures and calculated HOMO and LUMO surfaces of dyads <bold>4</bold> and <bold>5</bold>.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="center">Dyad</th>
<th align="center">Optimized structure</th>
<th align="center">HOMO (eV)</th>
<th align="center">LUMO (eV)</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="center">4</td>
<td align="center">
<inline-graphic xlink:href="FCHEM_fchem-2024-1473769_wc_tfx1.tif"/>
</td>
<td align="center">
<inline-graphic xlink:href="FCHEM_fchem-2024-1473769_wc_tfx2.tif"/>
</td>
<td align="center">
<inline-graphic xlink:href="FCHEM_fchem-2024-1473769_wc_tfx3.tif"/>
</td>
</tr>
<tr>
<td align="center">5</td>
<td align="center">
<inline-graphic xlink:href="FCHEM_fchem-2024-1473769_wc_tfx4.tif"/>
</td>
<td align="center">
<inline-graphic xlink:href="FCHEM_fchem-2024-1473769_wc_tfx5.tif"/>
</td>
<td align="center">
<inline-graphic xlink:href="FCHEM_fchem-2024-1473769_wc_tfx6.tif"/>
</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s2-3">
<title>Steady-state photophysical study</title>
<p>Steady-state absorption and fluorescence properties of dyads <bold>4</bold> and <bold>5</bold> were recorded in methanol and compared with that of acceptor BODIPY <bold>1</bold> and donors TAPP <bold>2</bold> and <bold>3</bold>. Different photophysical parameters are tabulated in <xref ref-type="table" rid="T2">Table 2</xref>, and their absorption and fluorescence spectra are shown in <xref ref-type="fig" rid="F3">Figures 3</xref>, <xref ref-type="fig" rid="F4">4</xref>, respectively.</p>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>Absorption and emission of acceptor BODIPY <bold>1</bold>, donors TAPP <bold>2</bold>, <bold>3</bold>, and dyads <bold>4</bold>, <bold>5</bold> in methanol.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="center">Compound</th>
<th align="center">&#x3bb;<sub>abs</sub> (nm)</th>
<th align="center">&#x3b5;<sub>max</sub> (M<sup>&#x2212;1</sup> cm<sup>&#x2212;1</sup>)<xref ref-type="table-fn" rid="Tfn1">
<sup>a</sup>
</xref>
</th>
<th align="center">&#x3bb;<sub>em</sub> (nm)</th>
<th align="center">&#x3bd; (cm<sup>&#x2212;1</sup>)<xref ref-type="table-fn" rid="Tfn2">
<sup>b</sup>
</xref>
</th>
<th align="center">&#x3a6;<sub>fl</sub>
</th>
<th align="center">% ETE</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="center">TAPP <bold>2</bold>
</td>
<td align="center">383</td>
<td align="center">37,915</td>
<td align="center">440</td>
<td align="center">3,382</td>
<td align="center">0.72<xref ref-type="table-fn" rid="Tfn4">
<sup>d</sup>
</xref>
</td>
<td align="center">&#x002D;</td>
</tr>
<tr>
<td align="center">TAPP <bold>3</bold>
</td>
<td align="center">381</td>
<td align="center">36,169</td>
<td align="center">439</td>
<td align="center">3,468</td>
<td align="center">0.71<xref ref-type="table-fn" rid="Tfn4">
<sup>d</sup>
</xref>
</td>
<td align="center">&#x002D;</td>
</tr>
<tr>
<td align="center">BODIPY <bold>1</bold>
</td>
<td align="center">497</td>
<td align="center">35,471</td>
<td align="center">516</td>
<td align="center">741</td>
<td align="center">0.0412<xref ref-type="table-fn" rid="Tfn5">
<sup>e</sup>
</xref>
</td>
<td align="center">&#x002D;</td>
</tr>
<tr>
<td align="center">Dyad <bold>4</bold>
</td>
<td align="center">400<break/>500</td>
<td align="center">53,105<break/>69,840</td>
<td align="center">516<break/>516</td>
<td align="center">5,620<xref ref-type="table-fn" rid="Tfn3">
<sup>c</sup>
</xref>
<break/>620</td>
<td align="center">0.0005<xref ref-type="table-fn" rid="Tfn4">
<sup>d</sup>
</xref>
</td>
<td align="center">99.83</td>
</tr>
<tr>
<td align="center">Dyad <bold>5</bold>
</td>
<td align="center">397<break/>500</td>
<td align="center">72,887<break/>94,723</td>
<td align="center">517<break/>533</td>
<td align="center">5,847<xref ref-type="table-fn" rid="Tfn3">
<sup>c</sup>
</xref>
<break/>1,238</td>
<td align="center">0.0003<xref ref-type="table-fn" rid="Tfn4">
<sup>d</sup>
</xref>
</td>
<td align="center">99.79</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="Tfn1">
<label>
<sup>a</sup>
</label>
<p>Extinction co-efficient at &#x3bb;<sub>abs</sub>.</p>
</fn>
<fn id="Tfn2">
<label>
<sup>b</sup>
</label>
<p>Stokes shift.</p>
</fn>
<fn id="Tfn3">
<label>
<sup>c</sup>
</label>
<p>Pseudo-Stokes shift.</p>
</fn>
<fn id="Tfn4">
<label>
<sup>d</sup>
</label>
<p>Quantum yield of fluorescence measured using perylene in ethanol (&#x3a6;<sub>fl</sub> &#x3d; 0.92) as the reference (<xref ref-type="bibr" rid="B8">Crosby and Demas, 1971</xref>).</p>
</fn>
<fn id="Tfn5">
<label>
<sup>e</sup>
</label>
<p>PM567 in ethanol (&#x3a6;<sub>fl</sub> &#x3d; 0.83) as the reference (<xref ref-type="bibr" rid="B33">Mula et al., 2008</xref>).</p>
</fn>
</table-wrap-foot>
</table-wrap>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>
<bold>(A)</bold> UV-vis absorption spectra of TAPP <bold>2</bold>, BODIPY <bold>1</bold>, and dyad <bold>4</bold> in methanol (1.4&#x2013;3.4 &#xd7; 10<sup>&#x2212;6</sup>&#xa0;M); <bold>(B)</bold> Fluorescence spectra (O.D. corrected) of TAPP <bold>2</bold>, dyad <bold>4</bold> (<italic>&#x3bb;</italic>
<sub>
<italic>ex</italic>
</sub> &#x3d; 395&#xa0;nm), and BODIPY <bold>1</bold> (<italic>&#x3bb;</italic>
<sub>
<italic>ex</italic>
</sub> &#x3d; 475&#xa0;nm) in methanol.</p>
</caption>
<graphic xlink:href="fchem-12-1473769-g003.tif"/>
</fig>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>
<bold>(A)</bold> UV-vis absorption spectra of TAPP <bold>3</bold>, BODIPY <bold>1</bold>, and dyad <bold>5</bold> in methanol (1.4&#x2013;3.4 &#xd7; 10<sup>&#x2212;6</sup>&#xa0;M); <bold>(B)</bold> Fluorescence spectra (O.D. corrected) of TAPP <bold>3</bold>, dyad <bold>5</bold> (<italic>&#x3bb;</italic>
<sub>
<italic>ex</italic>
</sub> &#x3d; 395&#xa0;nm), and BODIPY <bold>1</bold> (<italic>&#x3bb;</italic>
<sub>
<italic>ex</italic>
</sub> &#x3d; 475&#xa0;nm) in methanol.</p>
</caption>
<graphic xlink:href="fchem-12-1473769-g004.tif"/>
</fig>
<p>Donors TAPP <bold>2</bold> and <bold>3</bold> showed the longest absorption maximum (&#x3bb;<sub>abs</sub>) at &#x223c;382&#xa0;nm and high blue fluorescence (&#x3a6;<sub>fl</sub> &#x3d; 0.72), with a fluorescence maximum (&#x3bb;<sub>fl</sub>) at &#x223c;440&#xa0;nm; that is, the Stokes shifts of both the TAPPs are large (&#x223c;3,400&#xa0;cm<sup>&#x2212;1</sup>). On the other hand, the absorption and fluorescence spectra of acceptor BODIPY <bold>1</bold> are red-shifted compared to TAPP <bold>2</bold> and <bold>3</bold>. The &#x3bb;<sub>abs</sub> of BODIPY <bold>1</bold> is at 497&#xa0;nm, and it showed greenish fluorescence with &#x3bb;<sub>em</sub> at 516&#xa0;nm. Importantly, the fluorescence of BODIPY <bold>1</bold> is quenched (&#x3a6;<sub>fl</sub> &#x3d; 0.04) because of high non-radiative decay due to the free rotation of the C-8 phenyl ring (<xref ref-type="bibr" rid="B40">Sunahara et al., 2007</xref>).</p>
<p>Photophysical property studies of dyad <bold>4</bold> showed that absorption spectra contain &#x3bb;<sub>abs</sub> peaks of both donor and acceptor moieties at 400&#xa0;nm and 500&#xa0;nm, respectively (<xref ref-type="fig" rid="F3">Figure 3</xref>; <xref ref-type="table" rid="T2">Table 2</xref>). This indicates no/less electronic conjugation between the TAPP (donor) and the BODIPY (acceptor) moieties as seen in the DFT optimized structure discussed <italic>vide supra</italic>. In fluorescence studies, when the TAPP moiety was excited at 395&#xa0;nm, no characteristic blue fluorescence of the TAPP moiety or greenish-yellow fluorescence of BODIPY was observed. Complete quenching of TAPP fluorescence clearly indicates an efficient transfer of TAPP excitation energy to the acceptor BODIPY dyes. Due to the non-fluorescent nature of the acceptor BODIPY as discussed <italic>vide supra</italic>, emission of the BODIPY dyes was also not observed. The energy transfer efficiency was calculated from the decrease in the donor TAPP fluorescence, which showed extremely high energy transfer (99.83%) from TAPP to the BODIPY moiety.</p>
<p>Similar to dyad <bold>4</bold>, dyad <bold>5</bold> also showed absorption spectra containing &#x3bb;<sub>abs</sub> peaks of both donor and acceptor moieties at 397&#xa0;nm and 500&#xa0;nm, respectively (<xref ref-type="fig" rid="F4">Figure 4</xref>; <xref ref-type="table" rid="T2">Table 2</xref>). These prove that in dyad <bold>5</bold>, the donor and acceptor moieties are not electronically conjugated as also predicted from DFT optimized structures discussed <italic>vide supra</italic>. While exciting dyad <bold>5</bold> at the donor part (395&#xa0;nm), no fluorescence was observed either from the donor part or from the acceptor part. The drastic decrease in TAPP fluorescence clearly indicates an efficient transfer of TAPP excitation energy to the acceptor BODIPY dyes, as also seen in the case of dyad <bold>4</bold>. As the acceptor BODIPY is non-fluorescent in nature, emission of the BODIPY dyes was also not observed. The energy transfer efficiency was calculated from the decrease in the donor fluorescence, which showed extremely high energy transfer (99.79%) from TAPP to the BODIPY moiety.</p>
</sec>
<sec id="s2-4">
<title>Viscosity sensing study of dyad 5</title>
<p>Next, the viscosity-sensing ability of these TAPP-BODIPY dyads was investigated. For this, the absorbance and fluorescence of dyad <bold>5</bold> were checked in solvents with higher viscosity, that is, in ethanol, 1-propanol, 1-butanol, 1-nonanol, 1-decanol, and methanol/glycerol mixtures, and these properties were compared with those determined in low polar methanol as discussed before. The absorption spectra of dyad <bold>5</bold> in different n-alcohols and glycerol-methanol (1:1) mixtures were similar to that of methanol (<xref ref-type="sec" rid="s10">Supplementary Figure S1</xref>). However, remarkable changes were observed in fluorescence studies (<xref ref-type="fig" rid="F5">Figures 5A, B</xref>). With excitation at the TAPP moiety (&#x3bb;<sub>ex</sub> &#x3d; 395&#xa0;nm), the fluorescence emission from the BODIPY moiety was increased sharply in both 1-decanol and the methanol/glycerol (1:1) mixture, showing greenish-yellow fluorescence (<xref ref-type="fig" rid="F5">Figures 5A, B, D</xref>) compared to its non-fluorescent nature in methanol. In more viscous solvents, intramolecular rotation along C-C bonds connecting TAPP and BODIPY dyes decreases; thus, emission from the BODIPY moiety is enhanced. Importantly, fluorescence enhancement in both the solvents was similar when excited at TAPP as well as the BODIPY moiety in dyad <bold>5</bold>. This also confirmed the efficient energy transfer from the TAPP moiety to the BODIPY moiety. In different alcohols as well as in methanol/glycerol mixtures, the fluorescence intensities of dyad <bold>5</bold> increased with an increase in their viscosities. Interestingly, in both studies, the logarithm of fluorescent intensity and the logarithm of viscosity of solution obeyed a linear relationship as per the F&#xf6;rster&#x2013;Hoffmann equation (<xref ref-type="bibr" rid="B11">F&#xf6;rster and Hoffmann, 1971</xref>; <xref ref-type="bibr" rid="B21">Koenig et al., 2016</xref>). Furthermore, the temperature-dependent fluorescence of dyad <bold>5</bold> was measured in methanol and a glycerol-methanol (1:1) mixture. It was observed that with increasing temperature of the glycerol-methanol (1:1) mixture, emission from the BODIPY moiety decreases (<xref ref-type="fig" rid="F5">Figure 5C</xref>). (<xref ref-type="bibr" rid="B38">Sen et al., 2022</xref>) Now, with increasing temperature, the viscosity of the glycerol-methanol (1:1) mixture decreases; thus, the emission from the BODIPY moiety also decreases (<xref ref-type="fig" rid="F5">Figure 5C</xref>). On the other hand, no/very little change in the fluorescence of dyad <bold>5</bold> is observed with increasing temperature in pure methanol, as the temperature-dependent viscosity change in methanol is negligible (<xref ref-type="sec" rid="s10">Supplementary Figure S4</xref>). This clearly indicates that the fluorescence properties of dyad <bold>5</bold> depend on the viscosity of the medium. This showed the ability of dyad <bold>5</bold> to sense the viscosity as anticipated.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>
<bold>(A)</bold> Emission spectra of dyad <bold>5</bold> in methanol, ethanol, 1-propanol, 1-butanol, 1-nonanol, and 1-decanol (&#x3bb;<sub>ex</sub> &#x3d; 395&#xa0;nm) at 25&#xb0;C; inset: The linear response between log I<sub>524</sub> and log &#x3b7; in different n-alcohols. <bold>(B)</bold> Emission spectra of dyad <bold>5</bold> in different ratios of a glycerol-methanol mixture (&#x3bb;<sub>ex</sub> &#x3d; 395&#xa0;nm) at 25&#xb0;C; inset: The linear response between log I<sub>527</sub> and log &#x3b7; in different glycerol&#x2013;methanol mixtures. <bold>(C)</bold> Temperature-dependent fluorescence of dyad <bold>5</bold> in a glycerol&#x2013;methanol mixture (1:1) (&#x3bb;<sub>ex</sub> &#x3d; 395&#xa0;nm). <bold>(D)</bold> Color change of dyad <bold>5</bold> solutions in a methanol and glycerol&#x2013;methanol mixture (1:1) under visible and UV light.</p>
</caption>
<graphic xlink:href="fchem-12-1473769-g005.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="conclusion" id="s3">
<title>Conclusion</title>
<p>Two TAPP-BODIPY dyads, <bold>4</bold> and <bold>5</bold>, were developed as molecular rotors in which two naked BODIPY dyes (acceptors) are linked with TAPP moieties (donors) through the C2 and C5 positions via phenylethynyl linkers. X-ray crystallographic and theoretical studies showed that both the TAPP and BODIPY moieties are twisted with respect to each other; that is, they are not electronically conjugated. This is also confirmed by spectroscopic studies. Fluorescence studies showed highly efficient energy transfer from the donor TAPP moiety to the acceptor BODIPY moiety on excitation at the TAPP part. Due to the non-fluorescent characteristics of the naked BODIPY dyes, no fluorescence emission was observed from the BODIPY moiety. With the increase in solvent viscosity, the free rotations of the BODIPY dyes were restricted, and high emissions from the BODIPY moieties were observed. For example, the absorbance and fluorescence of dyad <bold>5</bold> were checked in solvents with higher viscosity, that is, in n-alcohols and methanol/glycerol (1:1) systems. On excitation at the TAPP moiety (&#x3bb;<sub>ex</sub> &#x3d; 395&#xa0;nm), a remarkable greenish-yellow fluorescence was observed from the BODIPY moiety. Furthermore, with an increase in the temperature of the methanol/glycerol (1:1) system, the fluorescence started decreasing due to the lowering of the viscosity. All these observations confirmed that the dyad <bold>5</bold> is capable of sensing the viscosity of the medium via the FRET-based Off-On mechanism. This type of viscosity sensor with a very large pseudo-Stokes shift will be useful for advanced chemo-bio sensing and imaging applications.</p>
</sec>
<sec id="s4">
<title>Experimental section</title>
<sec id="s4-1">
<title>General methods and materials</title>
<p>The detailed experimental methods and the data for the characterization of synthesized compounds (<sup>1</sup>H and <sup>13</sup>C NMR spectrum) are given in the <xref ref-type="sec" rid="s10">Supplementary Material</xref>.</p>
</sec>
<sec id="s4-2">
<title>General procedure for the synthesis of TAPP 13 and 14</title>
<p>
<italic>p</italic>-Methoxy/methyl aniline (1&#xa0;mmol) and 4-((trimethylsilyl)ethynyl) benzaldehyde (1&#xa0;mmol) were mixed in glacial acetic acid/toluene (1:10, 4&#xa0;mL), and the mixture was heated at 50&#xb0;C for 1&#xa0;h in a 50&#xa0;mL Schlenk tube. Then, Fe(ClO<sub>4</sub>)<sub>3</sub>&#xb7;xH<sub>2</sub>O (0.03&#xa0;mmol) and 2,3-butadione (0.5&#xa0;mmol) were added, and the mixture was heated again at 90&#xb0;C for 12&#xa0;h. Next, the crude product was dried under reduced pressure and subjected to column chromatography (silica gel, DCM/petroleum ether, 30:70) to furnish the pure products TAPP <bold>13/14,</bold> respectively.</p>
</sec>
<sec id="s4-3">
<title>1,4-Bis(4-methoxyphenyl)-2,5-bis(4((trimethylsilyl)ethynyl)phenyl)-1,4-dihydropyrrolo[3,2-b]pyrrole (TAPP 13)</title>
<p>TAPP <bold>13</bold> was synthesized by following the general procedure using <italic>p</italic>-methoxyaniline (123&#xa0;mg, 1.0&#xa0;mmol), 4-((trimethylsilyl)ethynyl)benzaldehyde (202&#xa0;mg, 1.0&#xa0;mmol), 2,3-butadione (43&#xa0;&#x3bc;L, 0.5&#xa0;mmol), and Fe(ClO<sub>4</sub>)<sub>3</sub> .H<sub>2</sub>O (11&#xa0;mg, 0.03&#xa0;mmol). Pure TAPP <bold>13</bold> was obtained as a yellow solid. Yield: 344&#xa0;mg, (52%), R<sub>f</sub> &#x3d; 0.75 (DCM/hexane, 30:70, v/v); <sup>1</sup>H NMR (500&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; 0.23 (s, 18H), 3.83 (s, 6H), 6.35 (s, 2H), 6.89 (d, <italic>J</italic> &#x3d; 8.0&#xa0;Hz, 4H), 7.12 (d, <italic>J</italic> &#x3d; 7.0&#xa0;Hz, 4H), 7.18 (d, <italic>J</italic> &#x3d; 8.0&#xa0;Hz, 4H), 7.30 (d, <italic>J</italic> &#x3d; 8.5&#xa0;Hz, 4H) ppm; <sup>13</sup>C NMR (125&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; &#x002D;0.03, 55.5, 94.1, 94.6, 105.3, 114.4, 120.2, 126.6, 127.5, 131.8, 132.5, 132.9, 133.6, 135.6, 157.7&#xa0;ppm; HRMS (ESI/Q-TOF) m/z: [M &#x2b; H]<sup>&#x2b;</sup> Calcd for C<sub>42</sub>H<sub>43</sub>N<sub>2</sub>O<sub>2</sub>Si<sub>2</sub> 663.2857; Found 663.2821.</p>
</sec>
<sec id="s4-4">
<title>1,4-Bis(4-methylphenyl)-2,5-bis(4((trimethylsilyl)ethynyl)phenyl)-1,4-dihydropyrrolo[3,2-<italic>b</italic>]pyrrole (TAPP 14)</title>
<p>TAPP <bold>14</bold> was synthesized by following the general procedure using <italic>p</italic>-methylaniline (107&#xa0;mg, 1.0&#xa0;mmol), 4-((trimethylsilyl)ethynyl) benzaldehyde (202&#xa0;mg, 1.0&#xa0;mmol), 2,3-butanedione (43&#xa0;&#x3bc;L, 0.5&#xa0;mmol), and Fe(ClO<sub>4</sub>)<sub>3</sub>.H<sub>2</sub>O (11&#xa0;mg, 0.03&#xa0;mmol). Pure TAPP <bold>14</bold> was obtained as a yellow solid. Yield: 208&#xa0;mg (66%); R<sub>f</sub> &#x3d; 0.45 (DCM/hexane, 30:70, v/v); <sup>1</sup>H NMR (500&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; 0.23 (s, 18H), 2.37 (s, 6H), 6.38 (s, 2H), 7.12&#x2013;7.15 (m, 12H), 7.30 (d, <italic>J</italic> &#x3d; 8.1&#xa0;Hz, 4H) ppm; <sup>13</sup>C NMR (125&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; <bold>-</bold>0.03, 20.9, 94.5, 94.8, 105.3, 120.3, 125.1, 127.6, 129.8, 131.7, 132.4, 133.7, 135.5, 135.7, 137.3&#xa0;ppm; HRMS (ESI/Q-TOF) m/z: [M &#x2b; H]<sup>&#x2b;</sup> Calcd for C<sub>42</sub>H<sub>43</sub>N<sub>2</sub>Si<sub>2</sub> 631.2959; Found 631.2964.</p>
</sec>
<sec id="s4-5">
<title>General procedure for the synthesis of TAPP 2 and 3</title>
<p>TAPP <bold>13/14</bold> (0.16&#xa0;mmol) and K<sub>2</sub>CO<sub>3</sub> (0.5&#xa0;mmol) were mixed in dry MeOH:DCM (1:1, 10&#xa0;mL), and the mixture was stirred at room temperature for 24&#xa0;h. The reaction mixture turned yellow, was extracted with dichloromethane (3 &#xd7; 30&#xa0;mL), and washed with saturated aq. NaHCO<sub>3</sub> (30&#xa0;mL), brine (30&#xa0;mL) and water (30&#xa0;mL). The organic layer was dried over anhydrous Na<sub>2</sub>SO<sub>4</sub> and evaporated under reduced pressure. The crude product was purified by column chromatography (silica gel, DCM/petroleum ether, 50:50) to furnish the pure products TAPP <bold>2/3</bold>, respectively.</p>
</sec>
<sec id="s4-6">
<title>2,5-Bis(4-ethynylphenyl)-1,4-bis(4-methoxyphenyl)-1,4-dihydropyrrolo[3,2-<italic>b</italic>]pyrrole (TAPP 2)</title>
<p>TAPP <bold>2</bold> was synthesized by following the general procedure using TAPP <bold>13</bold> (105&#xa0;mg, 0.16&#xa0;mmol) and K<sub>2</sub>CO<sub>3</sub> (68&#xa0;mg, 0.5&#xa0;mmol). Pure TAPP <bold>2</bold> was obtained as a yellow solid. Yield: 67&#xa0;mg (80%); R<sub>f</sub> &#x3d; 0.64 (DCM/hexane, 40:60, v/v); <sup>1</sup>H NMR (500&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; 3.08 (s, 2H), 3.84 (s, 6H), 6.36 (s, 2H), 6.91 (d, <italic>J</italic> &#x3d; 9.0&#xa0;Hz, 4H), 7.15 (d, <italic>J</italic> &#x3d; 8.5&#xa0;Hz, 4H), 7.20 (d, <italic>J</italic> &#x3d; 9.0&#xa0;Hz, 4H), 7.33 (d, <italic>J</italic> &#x3d; 8.5&#xa0;Hz, 4H) ppm; <sup>13</sup>C NMR (125&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; 55.5, 77.5, 83.8, 94.3, 114.5, 119.3, 126.6, 127.6, 131.9, 132.6, 132.9, 134.0, 135.6, 157.8&#xa0;ppm; HRMS (ESI/Q-TOF) m/z: [M &#x2b; H]<sup>&#x2b;</sup> Calcd for C<sub>36</sub>H<sub>27</sub>N<sub>2</sub>O<sub>2</sub> 519.2067; Found 519.2076.</p>
</sec>
<sec id="s4-7">
<title>2,5-Bis(4-ethynylphenyl)-1,4-di-(4-methylphenyl)-1,4-dihydropyrrolo[3,2-<italic>b</italic>]pyrrole (TAPP 3)</title>
<p>TAPP <bold>3</bold> was synthesized by following the general procedure using TAPP <bold>14</bold> (101&#xa0;mg, 0.16&#xa0;mmol) and K<sub>2</sub>CO<sub>3</sub> (69&#xa0;mg, 0.5&#xa0;mmol). Pure TAPP <bold>3</bold> was obtained as a yellow solid. Yield: 73&#xa0;mg (94%); R<sub>f</sub> &#x3d; 0.46 (DCM/hexane, 30:70, v/v); <sup>1</sup>H NMR (500&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; 2.38 (s, 6H), 3.07 (s, 2H)s, 6.39 (s, 2H), 7.15&#x2013;7.17 (m, 12H), 7.33 (d, <italic>J</italic> &#x3d; 8.3&#xa0;Hz, 4H) ppm; <sup>13</sup>C NMR (125&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; 21.0, 77.5, 83.8, 94.9, 119.3, 125.1, 127.6, 129.8, 131.9, 132.4, 134.0, 135.4, 135.8, 137.3&#xa0;ppm; HRMS (ESI/Q-TOF) m/z: [M &#x2b; H]<sup>&#x2b;</sup> Calcd for C<sub>36</sub>H<sub>27</sub>N<sub>2</sub> 487.2168; Found 487.2163.</p>
</sec>
<sec id="s4-8">
<title>4,4-Difluoro-8-(4&#x2032;-iodophenyl)-4-bora-3a,4a-diaza-s-indecene (9)</title>
<p>A mixture of 4-iodobenzaldehyde (<bold>7</bold>) (700&#xa0;mg, 3.0&#xa0;mmol), an excess of pyrrole (<bold>6</bold>) (9&#xa0;mL, 120.6&#xa0;mmol), and trifluoroacetic acid (5 drops) was stirred at 25&#xb0;C for 1&#xa0;day. Excess pyrrole was distilled off, and the residue was purified by flash column chromatography (silica gel, ethyl acetate/petroleum ether, 20:80) to obtain dipyrromethane <bold>8</bold> (770&#xa0;mg, 73%) as a cream color solid. Then, <bold>8</bold> (770&#xa0;mg, 2.2&#xa0;mmol) was dissolved in dry DCM, DDQ (753&#xa0;mg, 3.3&#xa0;mmol) was added into it, and the resulting mixture was stirred at 25&#xb0;C for 4&#xa0;h. Next, NEt<sub>3</sub> (1.8&#xa0;mL, 13&#xa0;mmol) and BF<sub>3</sub>.OEt<sub>2</sub> (1.6&#xa0;mL, 13&#xa0;mmol) were added, and stirring was continued for another 12&#xa0;h. The reaction mixture was quenched with sat. NaHCO<sub>3</sub> solution (50&#xa0;mL), extracted with dichloromethane (100&#xa0;mL), washed with water (3 &#xd7; 25&#xa0;mL), and dried with Na<sub>2</sub>SO<sub>4</sub>. The organic layer was concentrated <italic>in vacuo</italic>, and the crude product was purified by flash column chromatography (silica gel, ethyl acetate/petroleum ether, 5:95) to obtain BODIPY <bold>9</bold> as a dark orange solid (<xref ref-type="bibr" rid="B2">Betancourt-Mendiola et al., 2015</xref>). Yield: 159&#xa0;mg (18%); R<sub>f</sub> &#x3d; 0.65 (ethyl acetate/hexane, 25: 75, v/v); <sup>1</sup>H NMR (500&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; 6.56 (d, <italic>J</italic> &#x3d; 4.2&#xa0;Hz, 2H), 6.90 (d, <italic>J</italic> &#x3d; 4.3&#xa0;Hz, 2H), 7.30 (d, <italic>J</italic> &#x3d; 8.3&#xa0;Hz, 2H), 7.89 (d, <italic>J</italic> &#x3d; 8.3&#xa0;Hz, 2H), 7.95 (s, 2H) ppm; <sup>13</sup>C NMR (125&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; 97.5, 118.8, 131.3, 131.9, 133.1, 134.6, 137.7, 144.5, 145.9&#xa0;ppm; HRMS (ESI/Q-TOF) m/z: [M &#x2b; H]<sup>&#x2b;</sup> Calcd for C<sub>15</sub>H<sub>11</sub>BF<sub>2</sub>IN<sub>2</sub> 395.0022; Found 395.0021.</p>
</sec>
<sec id="s4-9">
<title>General procedure for the synthesis of dyads 4 and 5</title>
<p>TAPP <bold>2</bold>/<bold>3</bold> (0.05&#xa0;mmol), BODIPY <bold>9</bold> (0.10&#xa0;mmol), and di-isopropyl amine (0.5&#xa0;mL) were dissolved in dry THF (6&#xa0;mL), and the solution was degassed properly. Pd(PPh<sub>3</sub>)<sub>2</sub>Cl<sub>2</sub> (3.5&#xa0;mg, 0.005&#xa0;mmol) and CuI (1&#xa0;mg, 0.005&#xa0;mmol) were added, and the reaction was stirred at 25&#xb0;C for 24&#xa0;h. Removal of the solvent <italic>in vacuo</italic> followed by column chromatography of the residue (silica gel, DCM/petroleum ether, 70:30) furnished dyads <bold>4</bold>/<bold>5</bold>, respectively.</p>
</sec>
<sec id="s4-10">
<title>Dyad 4</title>
<p>Dyad <bold>4</bold> was synthesized by following the general procedure using TAPP <bold>2</bold> (26&#xa0;mg, 0.05&#xa0;mmol) and BODIPY <bold>1</bold> (42&#xa0;mg, 0.1&#xa0;mmol). Pure dyad <bold>4</bold> was obtained as a dark red solid. Yield: 40&#xa0;mg (80%). R<sub>f</sub> &#x3d; 0.35 (DCM/hexane, 70:30, v/v); <sup>1</sup>H NMR (500&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; 3.86 (s, 6H), 6.42 (s, 2H), 6.57 (d, <italic>J</italic> &#x3d; 7.4&#xa0;Hz, 4H), 6.93&#x2013;6.96 (m, 8H), 7.23&#x2013;7.24 (m, 8H), 7.42 (d, <italic>J</italic> &#x3d; 7.4&#xa0;Hz, 4H), 7.56 (d, <italic>J</italic> &#x3d; 7.7&#xa0;Hz, 4H), 7.65 (d, <italic>J</italic> &#x3d; 7.7&#xa0;Hz, 4H), 7.96 (s, 4H) ppm; <sup>13</sup>C NMR (125&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; 55.5, 88.9, 92.6, 94.4, 114.5, 118.7, 119.8, 126.3, 126.7, 127.7, 130.6, 131.4, 131.5, 131.6, 132.9, 133.3, 134.7, 144.3, 146.5, 157.9&#xa0;ppm; MS (MALDI-TOF): m/z [M]<sup>&#x2b;</sup> Calcd for C<sub>66</sub>H<sub>44</sub>B<sub>2</sub>F<sub>4</sub>N<sub>6</sub>O<sub>2</sub>: 1,050.4; Found 1,050.1.</p>
</sec>
<sec id="s4-11">
<title>Dyad 5</title>
<p>Dyad <bold>5</bold> was synthesized by following the general procedure using TAPP <bold>3</bold> (25&#xa0;mg, 0.05&#xa0;mmol) and BODIPY <bold>1</bold> (42&#xa0;mg, 0.10&#xa0;mmol). Pure dyad <bold>5</bold> was obtained as a dark red solid. Yield: 24&#xa0;mg (48%); R<sub>f</sub> &#x3d; 0.45 (DCM/hexane, 70:30, v/v); <sup>1</sup>H NMR (500&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; 2.41 (s, 6H), 6.45 (s, 2H), 6.56 (d, <italic>J</italic> &#x3d; 7.4&#xa0;Hz, 4H), 6.95 (d, <italic>J</italic> &#x3d; 7.6&#xa0;Hz, 4H), 7.19&#x2013;7.21 (m, 8H), 7.23 (d, <italic>J</italic> &#x3d; 8.1 Hz, 4H), 7.42 (d, <italic>J</italic> &#x3d; 8.1&#xa0;Hz, 4H), 7.56 (d, <italic>J</italic> &#x3d; 7.9&#xa0;Hz, 4H), 7.65 (d, <italic>J</italic> &#x3d; 7.9&#xa0;Hz, 4H), 7.95 (s, 4H) ppm; <sup>13</sup>C NMR (125&#xa0;MHz, CDCl<sub>3</sub>): &#x3b4; 21.0, 88.9, 92.6, 94.9, 118.7, 119.8, 125.1, 126.3, 127.7, 129.9, 130.5, 131.3, 131.4, 131.5, 132.6, 133.3, 133.9, 134.7, 135.5, 135.8, 137.3, 144.2, 146.4&#xa0;ppm. HRMS (ESI/Q-TOF) m/z: [M &#x2b; H]<sup>&#x2b;</sup> Calcd for C<sub>66</sub>H<sub>45</sub>B<sub>2</sub>F<sub>4</sub>N<sub>6</sub> 1,019.3822; Found 1,019.3820.</p>
</sec>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s5">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="sec" rid="s10">Supplementary Material</xref>; further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="s6">
<title>Author contributions</title>
<p>RA: formal analysis, writing&#x2013;original draft, data curation, investigation, and methodology. SG: formal analysis, investigation, methodology, and writing&#x2013;review and editing. SY: formal analysis, investigation, and writing&#x2013;review and editing. AW: investigation, writing&#x2013;review and editing, and formal analysis. SM: writing&#x2013;review and editing, conceptualization, supervision, and methodology.</p>
</sec>
<sec sec-type="funding-information" id="s7">
<title>Funding</title>
<p>The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This work is supported by the Department of Atomic Energy, Govt. of India (Project no. R&#x0026;D-040-2018).</p>
</sec>
<ack>
<p>The authors gratefully acknowledge Dr. Rajib Ghosh and Dr. Goutam Chakraborty of BARC for their helpful assistance in photophysical studies.</p>
</ack>
<sec sec-type="COI-statement" id="s8">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s9">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors, and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s10">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fchem.2024.1473769/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fchem.2024.1473769/full&#x23;supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet1.doc" id="SM1" mimetype="application/doc" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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