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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Chem.</journal-id>
<journal-title>Frontiers in Chemistry</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Chem.</abbrev-journal-title>
<issn pub-type="epub">2296-2646</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fchem.2019.00169</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Chemistry</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Key Mechanistic Features in Palladium-Catalyzed Methylcyclopropanation of Norbornenes With Vinyl Bromides: Insights From DFT Calculations</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name><surname>Ying</surname> <given-names>Fang</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/698563/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Zhang</surname> <given-names>Yutong</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Xiang</surname> <given-names>Chuyue</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author">
<name><surname>Song</surname> <given-names>Zhijun</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name><surname>Xie</surname> <given-names>Hujun</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x0002A;</sup></xref>
<uri xlink:href="http://loop.frontiersin.org/people/60395/overview"/>
</contrib>
<contrib contrib-type="author">
<name><surname>Bao</surname> <given-names>Weiliang</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
</contrib>
</contrib-group>
<aff id="aff1"><sup>1</sup><institution>Department of Applied Chemistry, Zhejiang Gongshang University</institution>, <addr-line>Hangzhou</addr-line>, <country>China</country></aff>
<aff id="aff2"><sup>2</sup><institution>Hangzhou Environmental Monitoring Center Station</institution>, <addr-line>Hangzhou</addr-line>, <country>China</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Chemistry, Zhejiang University</institution>, <addr-line>Hangzhou</addr-line>, <country>China</country></aff>
<author-notes>
<fn fn-type="edited-by"><p>Edited by: Zexing Cao, Xiamen University, China</p></fn>
<fn fn-type="edited-by"><p>Reviewed by: Chunsen Li, Fujian Institute of Research on the Structure of Matter (CAS), China; Xinzheng Yang, Institute of Chemistry (CAS), China; Wei Guan, Northeast Normal University, China</p></fn>
<corresp id="c001">&#x0002A;Correspondence: Hujun Xie <email>hujunxie&#x00040;gmail.com</email></corresp>
<fn fn-type="other" id="fn001"><p>This article was submitted to Theoretical and Computational Chemistry, a section of the journal Frontiers in Chemistry</p></fn></author-notes>
<pub-date pub-type="epub">
<day>27</day>
<month>03</month>
<year>2019</year>
</pub-date>
<pub-date pub-type="collection">
<year>2019</year>
</pub-date>
<volume>7</volume>
<elocation-id>169</elocation-id>
<history>
<date date-type="received">
<day>11</day>
<month>01</month>
<year>2019</year>
</date>
<date date-type="accepted">
<day>05</day>
<month>03</month>
<year>2019</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x000A9; 2019 Ying, Zhang, Xiang, Song, Xie and Bao.</copyright-statement>
<copyright-year>2019</copyright-year>
<copyright-holder>Ying, Zhang, Xiang, Song, Xie and Bao</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/"><p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p></license>
</permissions>
<abstract><p>DFT calculations were performed to elucidate mechanistic details of an unusual palladium-catalyzed methylcyclopropanation from [2 &#x0002B; 1] cycloadditions of (<italic>Z</italic>)-2-bromovinylbenzene and endo-N-(p-tolyl)-norbornenesuccinimide. The reaction proceeds via oxidative addition (OA), intermolecular alkene insertion, deprotonation/protonation, intramolecular alkene insertion, &#x003B2;-H elimination and reductive elimination (RE). Protonation is the rate-limiting step and requires an overall barrier of 28.5 kcal/mol. The sources of two protons for protonation and exchange have also been clarified and the calculations agree with experimental observations.</p></abstract>
<kwd-group>
<kwd>Pd catalysis</kwd>
<kwd>DFT calculation</kwd>
<kwd>cycloaddition</kwd>
<kwd>mechanism</kwd>
<kwd>protonation</kwd>
</kwd-group>
<contract-sponsor id="cn001">National Natural Science Foundation of China<named-content content-type="fundref-id">10.13039/501100001809</named-content></contract-sponsor>
<counts>
<fig-count count="10"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="84"/>
<page-count count="12"/>
<word-count count="4831"/>
</counts>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="s1">
<title>Introduction</title>
<p>Cyclopropane skeleton has attracted tremendous attention from organic chemists and can be found in many important biomolecules and pharmaceutical drugs (Hofmann et al., <xref ref-type="bibr" rid="B31">1954</xref>; Crowley et al., <xref ref-type="bibr" rid="B15">1961</xref>; Wiberg, <xref ref-type="bibr" rid="B73">1996</xref>; de Meijere, <xref ref-type="bibr" rid="B18">2003</xref>; Fedorynski, <xref ref-type="bibr" rid="B22">2003</xref>; Lebel et al., <xref ref-type="bibr" rid="B37">2003</xref>; Pietruszka, <xref ref-type="bibr" rid="B55">2003</xref>; Reissig and Zimmer, <xref ref-type="bibr" rid="B59">2003</xref>; Wessjohann et al., <xref ref-type="bibr" rid="B72">2003</xref>; Hata et al., <xref ref-type="bibr" rid="B29">2011</xref>; Chen et al., <xref ref-type="bibr" rid="B13">2014</xref>; Hiratsuka et al., <xref ref-type="bibr" rid="B30">2014</xref>). Many methods have been used to construct the cyclopropane scaffold, including transition metal mediated C&#x02013;C and C&#x02013;H bond activations (Satake and Nakata, <xref ref-type="bibr" rid="B60">1998</xref>; Goudreau and Charette, <xref ref-type="bibr" rid="B27">2010</xref>; Oonishi et al., <xref ref-type="bibr" rid="B53">2012</xref>; Masutomi et al., <xref ref-type="bibr" rid="B47">2014</xref>; Du et al., <xref ref-type="bibr" rid="B19">2015</xref>), carbene/carbenoid cycloadditions (Miki et al., <xref ref-type="bibr" rid="B50">2002</xref>; Biswas et al., <xref ref-type="bibr" rid="B8">2012</xref>; Lindsay et al., <xref ref-type="bibr" rid="B40">2013</xref>), Simmons&#x02013;Smith reactions (Simmons and Smith, <xref ref-type="bibr" rid="B64">1958</xref>; Beaulieu et al., <xref ref-type="bibr" rid="B4">2013</xref>), Michael-initiated ring closure (MIRC) (Xie et al., <xref ref-type="bibr" rid="B75">2007</xref>; Xuan et al., <xref ref-type="bibr" rid="B80">2009</xref>), cycloisomerizations (Bruneau, <xref ref-type="bibr" rid="B10">2005</xref>; Miege et al., <xref ref-type="bibr" rid="B49">2011</xref>), and the coupling of norbornenes with organoboron reagents or alkynes (Bigeault et al., <xref ref-type="bibr" rid="B7">2005</xref>; Miura et al., <xref ref-type="bibr" rid="B51">2006</xref>).</p>
<p>However, the cyclopropanation of halohydrocarbon with alkenes catalyzed by transition metal catalysts by a non-carbene mechanism is still underdeveloped (Mao and Bao, <xref ref-type="bibr" rid="B43">2014a</xref>; Mao et al., <xref ref-type="bibr" rid="B46">2014</xref>). Recently, we firstly reported the palladium-catalyzed methylcyclopropanation of bromostyrenes with norbornenes via [2 &#x0002B; 1] cycloaddition, and the reactions proceed by a methylene protonation and a H/D exchange with CD<sub>3</sub>OD (Mao et al., <xref ref-type="bibr" rid="B45">2015</xref>). A methylcyclopropane group was constructed through a three-fold domino method including an important protonation process. The experimental results demonstrated that a norbornenylpalladium intermediate could capture one proton from research systems (Palucki et al., <xref ref-type="bibr" rid="B54">1997</xref>; Torraca et al., <xref ref-type="bibr" rid="B67">2000</xref>; Kuwabe et al., <xref ref-type="bibr" rid="B35">2001</xref>; Matsukawa et al., <xref ref-type="bibr" rid="B48">2005</xref>; Tseng et al., <xref ref-type="bibr" rid="B68">2006</xref>; Dash and Janni, <xref ref-type="bibr" rid="B16">2012</xref>; Mao and Bao, <xref ref-type="bibr" rid="B44">2014b</xref>). The mechanistic studies revealed that the methylcyclopropanation step proceeds via a protonation and a H/D exchange with CD<sub>3</sub>OD. As shown in Scheme <xref ref-type="scheme" rid="F9">1</xref>, two different deuterium atoms from CD<sub>3</sub>OD were chemoselectively added into the two positions of methylcyclopropane derivatives. Herein, quantum chemistry (QC) calculations have been used to elucidate the reaction mechanisms, and the protonation step and a H/D exchange process from CD<sub>3</sub>OD have also been explored and discussed.</p>
<fig position="float">
<label>Graphical Abstract</label>
<caption><p>Palladium-Catalyzed Methylcyclopropanation of Norbornenes With Vinyl Bromides.</p></caption>
<graphic xlink:href="fchem-07-00169-g0010.tif"/>
</fig>
<fig id="F9" position="float">
<label>Scheme 1</label>
<caption><p>Deuterium-labeling studies.</p></caption>
<graphic xlink:href="fchem-07-00169-g0009.tif"/></fig>
</sec>
<sec id="s2">
<title>Computational Methods</title>
<p>All of species were optimized through M06 functional (Zhao and Truhlar, <xref ref-type="bibr" rid="B81">2006a</xref>,<xref ref-type="bibr" rid="B82">b</xref>, <xref ref-type="bibr" rid="B83">2008</xref>) in combination with 6-31G(d,p) basis set for H, C, O and N atoms. The Pd, P, Br, and Cs atoms were described by LANL2DZ basis set (Ehlers et al., <xref ref-type="bibr" rid="B20">1993</xref>; Check et al., <xref ref-type="bibr" rid="B12">2001</xref>). The polarization functions involving Pd(&#x003B6;<sub>f</sub>) &#x0003D; 1.472 (Huzinaga, <xref ref-type="bibr" rid="B32">1984</xref>), Br(&#x003B6;<sub>d</sub>) &#x0003D; 0.389, P(&#x003B6;<sub>d</sub>) &#x0003D; 0.340, and Cs(&#x003B6;<sub>f</sub>) &#x0003D; 0.306 were also added (Amatore et al., <xref ref-type="bibr" rid="B1">1992</xref>). The structural parameters of complex <bold>1</bold> from calculations are consistent with the measured parameters from experiments (<xref ref-type="fig" rid="F1">Figure 1</xref>; Mao et al., <xref ref-type="bibr" rid="B45">2015</xref>) suggesting that the computational method in our calculations is right. Frequency analyses have been used to obtain the zero-point energies (ZPE), and then confirmed the transition states with only one imaginary frequency and the intermediates with zero imaginary frequency. Each transition state was also validated through intrinsic reaction coordinate calculations to connect the reactant and product (Fukui, <xref ref-type="bibr" rid="B25">1970</xref>, <xref ref-type="bibr" rid="B26">1981</xref>). Natural bond orbital (NBO) was carried out to obtain atomic charge distribution (Reed and Weinhold, <xref ref-type="bibr" rid="B57">1985</xref>; Reed et al., <xref ref-type="bibr" rid="B58">1985</xref>, <xref ref-type="bibr" rid="B56">1988</xref>). In order to reduce the costs for computation, the triphenylphosphine (PPh<sub>3</sub>) ligand used in experiments was replaced by trimethylphosphine (PMe<sub>3</sub>), and the reliability of this models has been validated by previous calculations (Xie et al., <xref ref-type="bibr" rid="B78">2013a</xref>,<xref ref-type="bibr" rid="B77">b</xref>). All calculations were performed by Gaussian09 software (Frisch et al., <xref ref-type="bibr" rid="B24">2009</xref>).</p>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption><p>Free energy profiles for two possible oxidative addition pathways.</p></caption>
<graphic xlink:href="fchem-07-00169-g0001.tif"/>
</fig>
<p>A continuum medium strategy based on the optimized species in gas-phase was performed to obtain single point energy in solvent. We selected the conductor-like polarizable continuum model (CPCM) involving an UAHF radii method (Barone and Cossi, <xref ref-type="bibr" rid="B3">1998</xref>; Cossi et al., <xref ref-type="bibr" rid="B14">2003</xref>). Toluene was utilized as solvent based on reaction conditions.</p>
<p>The entropy change was taken into consideration in a bimolecular process, and the corrections were added to the free energies based on the free volume theory (Benson, <xref ref-type="bibr" rid="B6">1982</xref>). For 2 to 1 (or 1 to 2) change, a correction of &#x02212;2.6 (or 2.6) kcal/mol was necessary. The corrections have been validated by previous calculations (Okuno, <xref ref-type="bibr" rid="B52">1997</xref>; Ardura et al., <xref ref-type="bibr" rid="B2">2005</xref>; Liu et al., <xref ref-type="bibr" rid="B42">2009</xref>, <xref ref-type="bibr" rid="B41">2012</xref>; Schoenebeck and Houk, <xref ref-type="bibr" rid="B61">2010</xref>; Wang et al., <xref ref-type="bibr" rid="B69">2012a</xref>,<xref ref-type="bibr" rid="B70">b</xref>). The relative Gibbs free energies from solvent were adopted to analyze the reaction mechanisms in this manuscript.</p>
</sec>
<sec id="s3">
<title>Results and Discussion</title>
<p>Oxidative addition is expected to be the initial step for Pd-catalyzed methylcyclopropanation of norbornene with vinyl bromide, and the corresponding free energy profiles are shown in <xref ref-type="fig" rid="F1">Figure 1</xref>, and optimized geometries for different transition states are described in <xref ref-type="fig" rid="F2">Figure 2</xref>. From palladium bisphosphine complex <bold>1</bold>, two possible pathways for the formation of complex <bold>3</bold> are proposed. Path <bold>a</bold> (black) is related to the bisphosphine pathway and path <bold>b</bold> (blue) involves the monodentate phosphine pathway. The calculation results showed that path <bold>a</bold> is preferred. In path <bold>a</bold>, the double bond of substrate (<italic>Z</italic>)-2-bromovinylbenzene is coordinated to the Pd center to produce complex <bold>2</bold>, and the process is endergonic via 10.6 kcal/mol. Subsequently, the three-membered ring oxidative addition transition state has been located with an overall barrier of 23.3 kcal/mol from <bold>1</bold> to <bold>TS</bold><sub>23</sub>, and generates a square-planar complex <bold>3</bold>. In path <bold>b</bold>, one phosphine ligand of complex <bold>1</bold> is dissociated to give complex <bold>4</bold>, and the barrier is predicted to be 33.0 kcal/mol for dissociation process based on the method proposed by Hall and coworkers (Hartwig et al., <xref ref-type="bibr" rid="B28">2005</xref>). From <bold>4</bold>, the substrate enters into reaction system to yield complex <bold>5</bold>, followed by oxidative addition with a barrier (<bold>TS</bold><sub>56</sub>) of 7.5 kcal/mol to afford a three-coordinate complex <bold>6</bold>. Finally, complex <bold>3</bold> is produced via the coordination of phosphine ligand.</p>
<fig id="F2" position="float">
<label>Figure 2</label>
<caption><p>Optimized geometries (&#x000C5;) for selected transition states.</p></caption>
<graphic xlink:href="fchem-07-00169-g0002.tif"/>
</fig>
<p>From <bold>3</bold>, the reaction proceeds by intermolecular alkene insertion step, and two possible pathways are presented considering different coordination directions of endo-N-(p-tolyl)-norbornenesuccinimide (<xref ref-type="fig" rid="F3">Figure 3</xref>). In path <bold>c</bold>, two bridge-hydrogen atoms and the bridge-carbon atom of norbornene moieties are outside of the plane. While in path <bold>d</bold>, two bridge-hydrogen atoms and the bridge-carbon atom of norbornene moieties locate inside of the plane. According to the calculations, path <bold>c</bold> (12.2 kcal/mol for <bold>TS</bold><sub>78</sub>) is more favorable than path <bold>d</bold> (17.3 kcal/mol for <bold>TS</bold><inline-formula><mml:math id="M1"><mml:msub><mml:mrow></mml:mrow><mml:mrow><mml:mn>7</mml:mn><mml:msup><mml:mrow><mml:mn>8</mml:mn></mml:mrow><mml:mrow><mml:mtext>&#x02032;</mml:mtext></mml:mrow></mml:msup></mml:mrow></mml:msub></mml:math></inline-formula>) by 5.1 kcal/mol, then a stable four-coordinate intermediate <bold>8</bold> is formed and this process is obviously exergonic by 17.7 kcal/mol.</p>
<fig id="F3" position="float">
<label>Figure 3</label>
<caption><p>Free energy profiles for two possible intermolecular alkene insertion pathways.</p></caption>
<graphic xlink:href="fchem-07-00169-g0003.tif"/>
</fig>
<p>From <bold>8</bold>, we consider the possibility for the formation of ion pair complex <bold>9&#x00027;</bold> as described in previous experiments (Mao et al., <xref ref-type="bibr" rid="B45">2015</xref>). The calculations showed the relative Gibbs free energy of this complex is very high with a value of 68.1 kcal/mol (<xref ref-type="fig" rid="F4">Figure 4</xref>), thus we exclude this possibility. Alternatively, we investigate the key role of base in deprotonation, which has been confirmed in previous experiments (Wasa et al., <xref ref-type="bibr" rid="B71">2009</xref>; Liang et al., <xref ref-type="bibr" rid="B39">2012</xref>) and calculations (Biswas et al., <xref ref-type="bibr" rid="B9">2000</xref>; Davies et al., <xref ref-type="bibr" rid="B17">2005</xref>; Lafrance et al., <xref ref-type="bibr" rid="B36">2007</xref>; Ess et al., <xref ref-type="bibr" rid="B21">2008</xref>; Kefalidis et al., <xref ref-type="bibr" rid="B34">2010</xref>; Figg et al., <xref ref-type="bibr" rid="B23">2013</xref>; Xie et al., <xref ref-type="bibr" rid="B79">2013c</xref>, <xref ref-type="bibr" rid="B76">2016</xref>). However, it is interesting to note that the &#x003B3;-H<sub>1</sub> in complex <bold>8</bold> is far away from palladium center with the Pd&#x02013;H<sub>1</sub> distance of 5.268 &#x000C5; (<xref ref-type="fig" rid="F4">Figure 4</xref>), therefore, it is very difficult to activate this C&#x02013;H<sub>1</sub> bond. The &#x003B3;-C&#x02013;H activation has been previously accomplished by Yu et al. (Li et al., <xref ref-type="bibr" rid="B38">2014</xref>; Jiang et al., <xref ref-type="bibr" rid="B33">2016</xref>; Wu et al., <xref ref-type="bibr" rid="B74">2016</xref>; Shao et al., <xref ref-type="bibr" rid="B62">2017</xref>, <xref ref-type="bibr" rid="B63">2018</xref>; Zhu et al., <xref ref-type="bibr" rid="B84">2018</xref>), and they developed a weakly coordinating directing group to help the C&#x02013;H bond activation. From <bold>8</bold>, the ligand substitution of Cs<sub>2</sub>CO<sub>3</sub> and CsCO<inline-formula><mml:math id="M2"><mml:msubsup><mml:mrow></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> for Br<sup>&#x02212;</sup> occurs to give a stable complex <bold>9</bold>, where the &#x003B3;-H<sub>1</sub> generates weak hydrogen bond interaction with the oxygen atom of CsCO<inline-formula><mml:math id="M3"><mml:msubsup><mml:mrow></mml:mrow><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mo>-</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula>. The &#x003B3;-C&#x02013;H<sub>1</sub> distance is 1.110 &#x000C5; in complex <bold>9</bold> (<xref ref-type="fig" rid="F5">Figure 5</xref>), indicating that this bond has been activated. Subsequently, the deprotonation is easy to take place to give complex <bold>10</bold> with a barrier (<bold>TS</bold><sub>9&#x02212;10</sub>) of only 8.9 kcal/mol. The C&#x02013;H<sub>1</sub> and O&#x02013;H<sub>1</sub> bond length in <bold>TS</bold><sub>9&#x02212;10</sub> are 1.430 &#x000C5; and 1.221 &#x000C5;, respectively (<xref ref-type="fig" rid="F5">Figure 5</xref>). For comparison, the &#x003B1;-H and &#x003B2;-H on the same side of Pd center can be activated by palladium center, and the barriers for &#x003B1;-H (26.8 kcal/mol) and &#x003B2;-H (14.2 kcal/mol) are much higher than that of &#x003B3;-H. From <bold>10</bold>, the ligand substitution of five CH<sub>3</sub>OH molecules for Cs<sub>2</sub>CO<sub>3</sub> and CsHCO<sub>3</sub> takes place to generate an unstable complex <bold>10</bold>, and this process is significantly endergonic by 25.7 kcal/mol, accompanied by protonation via <bold>TS</bold><sub>11&#x02212;12</sub> to yield complex <bold>12</bold>. It is worth noting that the proton comes from hydroxyl of methanol. An overall barrier of protonation step is 28.5 kcal/mol from <bold>10</bold> to <bold>TS</bold><sub>11&#x02212;12</sub>, which is the rate-limiting step of catalytic cycle. We have used several density functionals including B3LYP-D3 (Becke, <xref ref-type="bibr" rid="B5">1993</xref>; Stephens et al., <xref ref-type="bibr" rid="B65">1994</xref>), TPSS (Tao et al., <xref ref-type="bibr" rid="B66">2003</xref>), M06-2X (Zhao and Truhlar, <xref ref-type="bibr" rid="B83">2008</xref>), WB97X-D (Chai and Head-Gordon, <xref ref-type="bibr" rid="B11">2008</xref>) to evaluate the functional dependency of this transition metal system. The calculations demonstrated that different functionals have slight effect on the rate-determining state. The barriers (<bold>TS</bold><sub>11&#x02212;12</sub>) for B3LYP-D3, TPSS, M06-2X, and WB97X-D are 26.9, 31.2, 29.3, and 27.8 kcal/mol, respectively. From <bold>12</bold>, intramolecular alkene insertion occurs to give a cyclopropanepalladium complex <bold>13</bold> and it requires a barrier (<bold>TS</bold><sub>12&#x02212;13</sub>) of only 3.0 kcal/mol. Then complex <bold>14</bold> is generated via the release of four methanol molecules. We know that the &#x003B3;-H<sub>1</sub> in complex <bold>8</bold> is far away from palladium center, thus five CH<sub>3</sub>OH molecules are necessary to form the hydrogen bonding network between &#x003B3;-H<sub>1</sub> and Pd center for proton transfer in <bold>TS</bold><sub>11&#x02212;12</sub>. In addition, we also considered the influence of methanol number on the barriers for proton transfer, and the calculations showed that it has only slight effect. The barriers are 28.5 kcal/mol (<bold>TS</bold><sub>11&#x02212;12</sub>) for five methanol molecules, 31.4 kcal/mol (<bold>TS</bold><sub>11&#x02212;12_</sub>A) for six methanol molecules, 30.9 kcal/mol (<bold>TS</bold><sub>11&#x02212;12_</sub>B) for seven methanol molecules, and 30.3 kcal/mol (<bold>TS</bold><sub>11&#x02212;12_</sub>C) for eight methanol molecules, respectively (see <xref ref-type="supplementary-material" rid="SM1">Supporting Information</xref>). We also consider the other possible pathway for proton exchange with CH<sub>3</sub>OH and intramolecular alkene insertion, where the intramolecular alkene insertion occurs first (see <xref ref-type="supplementary-material" rid="SM1">Figure S1</xref>). The calculations illustrated that the protonation by methanol molecule is the rate-determining step for catalytic cycle, and needs much higher overall barrier (35.8 kcal/mol from <bold>11</bold><bold>&#x02032;</bold> to <bold>TS</bold><inline-formula><mml:math id="M4"><mml:msub><mml:mrow></mml:mrow><mml:mrow><mml:mn>12</mml:mn><mml:mo>-</mml:mo><mml:mn>1</mml:mn><mml:msup><mml:mrow><mml:mn>3</mml:mn></mml:mrow><mml:mrow><mml:mi>&#x02032;</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:msub></mml:math></inline-formula>) than the barrier mentioned above (28.5 kcal/mol from <bold>10</bold> to <bold>TS</bold><sub>11&#x02212;12</sub>).</p>
<fig id="F4" position="float">
<label>Figure 4</label>
<caption><p>Free energy profiles for proton exchange with CH<sub>3</sub>OH and intramolecular alkene insertion.</p></caption>
<graphic xlink:href="fchem-07-00169-g0004.tif"/>
</fig>
<fig id="F5" position="float">
<label>Figure 5</label>
<caption><p>Optimized important geometries (&#x000C5;) as presented in <xref ref-type="fig" rid="F4">Figure 4</xref>.</p></caption>
<graphic xlink:href="fchem-07-00169-g0005.tif"/>
</fig>
<p>From <bold>14</bold>, the reaction can proceed via &#x003B2;-H elimination and two possible pathways are proposed due to the existence of two &#x003B2;-H atom for Pd center (<xref ref-type="fig" rid="F6">Figure 6</xref>). One is from methoxyl group (path <bold>e</bold>) and the other is from the cyclopropane carbon-bonded hydrogen atom (path <bold>f</bold>). The calculations demonstrated that path <bold>e</bold> (16.7 kcal/mol for <bold>TS</bold><sub>14&#x02212;15</sub>) is more favorable than path <bold>d</bold> (23.0 kcal/mol for <bold>TS</bold><sub>14&#x02212;16</sub>), and optimized geometries of two transition states are described in <xref ref-type="fig" rid="F7">Figure 7</xref>. Subsequently, a square-planar complex <bold>15</bold> is generated, followed by the release of methanal to produce complex <bold>17</bold>. A methylcyclopropane product is then formed via the C&#x02013;H bond reductive elimination, and it needs a barrier (<bold>TS</bold><sub>17&#x02212;4</sub>) of 9.5 kcal/mol. Finally, one phosphine ligand is coordinated to the Pd center to regenerate the catalyst. It is clearly to see that the proton for the protonation of a methylcyclopropane subunit comes from the methyl of CH<sub>3</sub>OH, which is consistent with the deuterium-labeling experiments (Fedorynski, <xref ref-type="bibr" rid="B22">2003</xref>).</p>
<fig id="F6" position="float">
<label>Figure 6</label>
<caption><p>Free energy profiles for &#x003B2;-H elimination and C&#x02013;H bond reductive elimination.</p></caption>
<graphic xlink:href="fchem-07-00169-g0006.tif"/>
</fig>
<fig id="F7" position="float">
<label>Figure 7</label>
<caption><p>Optimized geometries (&#x000C5;) for selected transition states as presented in <xref ref-type="fig" rid="F6">Figure 6</xref>.</p></caption>
<graphic xlink:href="fchem-07-00169-g0007.tif"/>
</fig>
<p>As described in <xref ref-type="fig" rid="F8">Figure 8</xref>, the catalytic cycle for the reaction of (<italic>Z</italic>)-2-bromovinylbenzene with endo-N-(p-tolyl)-norbornenesuccinimide undergoes six steps, consist of oxidative addition (OA), intermolecular olefin insertion, deprotonation/protonation, intramolecular olefin insertion, &#x003B2;-H elimination and reductive elimination (RE), and protonation is the rate-determining step and requires an overall barrier of 28.5 kcal/mol from <bold>10</bold> to <bold>TS</bold><sub>11&#x02212;12</sub>.</p>
<fig id="F8" position="float">
<label>Figure 8</label>
<caption><p>Catalytic cycle for palladium-catalyzed methylcyclopropanation between (<italic>Z)</italic>-2-bromovinylbenzene and endo-N-(p-tolyl)-norbornenesuccinimide.</p></caption>
<graphic xlink:href="fchem-07-00169-g0008.tif"/>
</fig>
</sec>
<sec sec-type="conclusions" id="s4">
<title>Conclusions</title>
<p>In conclusion, Pd-catalyzed [2 &#x0002B; 1] cycloaddition domino reaction mechanisms of (<italic>Z)</italic>-2-bromovinylbenzene and endo-N-(p-tolyl)-norbornenesuccinimide have been studied by DFT calculations. The results revealed that the methylcyclopropanation process underwent six steps, including oxidative addition, intermolecular alkene insertion, deprotonation/protonation, intramolecular alkene insertion, &#x003B2;-H elimination and reductive elimination, and protonation by methanol is the rate-limiting step with an overall barrier of 28.5 kcal/mol. In addition, the hydrogen atoms for protonation and exchange are both from the methanol, and the former comes from the methyl of methanol, and the latter comes from the hydroxyl of methanol. These calculation results are consistent with the deuterium-labeling experiments.</p>
</sec>
<sec id="s5">
<title>Author Contributions</title>
<p>The work was completed by cooperation of all authors. HX and WB were responsible for the study of concept and design of the project. FY, YZ, CX, and ZS searched the intermediates and transition states and analyzed the data and drew energy profiles. FY, YZ, HX, and WB drafted and revised the manuscript.</p>
<sec>
<title>Conflict of Interest Statement</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
</sec>
</body>
<back>
<sec sec-type="supplementary-material" id="s6">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fchem.2019.00169/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fchem.2019.00169/full#supplementary-material</ext-link></p>
<supplementary-material xlink:href="Table_1.DOC" id="SM1" mimetype="application/msword" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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<fn fn-type="financial-disclosure"><p><bold>Funding.</bold> This work was supported by the National Natural Science Foundation of China (21203166), the Natural Science Foundation of Zhejiang Province (LY17B050001).</p>
</fn>
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