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<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Chem. Eng.</journal-id>
<journal-title>Frontiers in Chemical Engineering</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Chem. Eng.</abbrev-journal-title>
<issn pub-type="epub">2673-2718</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1463785</article-id>
<article-id pub-id-type="doi">10.3389/fceng.2024.1463785</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Chemical Engineering</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The role of solid-state fermentation to transform existing waste treatment plants based on composting and anaerobic digestion into modern organic waste-based biorefineries, in the framework of circular bioeconomy</article-title>
<alt-title alt-title-type="left-running-head">Artola et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fceng.2024.1463785">10.3389/fceng.2024.1463785</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Artola</surname>
<given-names>Adriana</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/436802/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/"/>
<role content-type="https://credit.niso.org/contributor-roles/investigation/"/>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Font</surname>
<given-names>Xavier</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/782670/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/"/>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>Moral-Vico</surname>
<given-names>Javier</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/1957326/overview"/>
<role content-type="https://credit.niso.org/contributor-roles/Writing - review &#x26; editing/"/>
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</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>S&#xe1;nchez</surname>
<given-names>Antoni</given-names>
</name>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/88919/overview"/>
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</contrib-group>
<aff>
<institution>GICOM Research Group</institution>, <institution>Department of Chemical, Biological and Environmental Engineering</institution>, <institution>School of Engineering</institution>, <institution>Edifici Q, Universitat Aut&#xf2;noma de Barcelona</institution>, <addr-line>Barcelona</addr-line>, <country>Spain</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/655407/overview">Madan L. Verma</ext-link>, Indian Institute of Information Technology, Una, India</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/2795840/overview">J&#xe9;ssica Mulinari</ext-link>, The University of Passo Fundo, Brazil</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/435755/overview">Arturo F. Chica</ext-link>, University of Cordoba, Spain</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/899746/overview">Simone Kubeneck</ext-link>, Federal University of the Southern Frontier, Brazil</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Antoni S&#xe1;nchez, <email>antoni.sanchez@uab.cat</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>17</day>
<month>10</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>6</volume>
<elocation-id>1463785</elocation-id>
<history>
<date date-type="received">
<day>12</day>
<month>07</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>07</day>
<month>10</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Artola, Font, Moral-Vico and S&#xe1;nchez.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Artola, Font, Moral-Vico and S&#xe1;nchez</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Biorefineries are emerging facilities that are planned to transform existing waste treatment plants based on composting and/or anaerobic digestion into complex installations where biological and physicochemical processes coexist to maximize the recovery of renewable energy and valuable bioproducts. Biorefineries are mainly based on the use of several typologies of organic waste as starting material. This feature, together with the fact that biorefineries are supposed to be carbon neutral, has provoked that two biotechnologies arise as the key to have a successful biorefinery in economic and environmental terms: anaerobic digestion, a consolidated renewable energy provider, and solid-state fermentation, an emerging technology, derived from composting, to act as a supplier of a new generation of biorefinery products that include enzymes, bioplastics, biopesticides, biosurfactants and bioestimulants, among others. This review explores the importance of the role of anaerobic digestion and solid-state fermentation in novel biorefineries, highlighting their obvious advantages and their main challenges, in a specific moment where anaerobic digestion and, in consequence, digestate, are undergoing an exponential increase as a renewable energy source and a predominant organic waste.</p>
</abstract>
<abstract abstract-type="graphical">
<title>Graphical Abstract</title>
<p>
<graphic xlink:href="FCENG_fceng-2024-1463785_wc_abs.tif"/>
</p>
</abstract>
<kwd-group>
<kwd>organic waste</kwd>
<kwd>solid-state bioconversion</kwd>
<kwd>biomaterials</kwd>
<kwd>bioproducts</kwd>
<kwd>renewable energy</kwd>
<kwd>zero-waste strategy</kwd>
</kwd-group>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Environmental Chemical Engineering</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Highlights</title>
<p>
<list list-type="simple">
<list-item>
<p>&#x2022; Biorefineries are emerging new facilities to use organic waste as feedstock.</p>
</list-item>
<list-item>
<p>&#x2022; The main resulting products from biorefineries are renewable energy and biomaterials.</p>
</list-item>
<list-item>
<p>&#x2022; Anaerobic digestion is the main actor in biorefineries to provide renewable energy.</p>
</list-item>
<list-item>
<p>&#x2022; Solid-state fermentation is one of the main emerging technologies to obtain bioproducts.</p>
</list-item>
<list-item>
<p>&#x2022; Both technologies have advantages and challenges to overcome.</p>
</list-item>
</list>
</p>
</sec>
<sec id="s2">
<title>1 Introduction</title>
<p>In response to the classical linear economic procedures, which have eventually led to an emergence related to critical environmental issues such as global warming and climate change, new strategies are being developed to break this linearity in favour of circular approaches by reducing the dependence on fossil fuels and introducing new ways of economic development. The objective of these novel paradigm is to implement sustainable production processes and development, according to the Sustainable Development Goals (SDG) promoted by the United Nations (<xref ref-type="bibr" rid="B82">United Nations, 2017</xref>). Some of these strategies include Circular Economy as a trend specifically designed to increase process sustainability.</p>
<p>In this framework, biorefineries are installations for the design of products and processes that reduce or eliminate the generation of substances that are hazardous for humans and/or the environment, replacing them by biomaterials (<xref ref-type="bibr" rid="B83">US Environmental Protection Agency, 2024</xref>). Biorefineries&#x2019; performance must be analysed across the life cycle of any obtained bioproduct (design, manufacture, use and disposal) to be really sustainable; therefore, Life Cycle Assessment (LCA) is an essential tool for their evaluation in terms of environmental impact. On the other hand, Circular Economy draws from concepts derived from Industrial Ecology, Industrial Symbiosis and Smart cities. Circular Economy is defined by the European Commission as: &#x201c;A model of production and consumption, which involves sharing, leasing, reusing, repairing, refurbishing and recycling existing materials and products as long as possible&#x201d;. In this way, the life cycle of products is extended (<xref ref-type="bibr" rid="B31">European Union, 2015</xref>), although other definitions can be found (<xref ref-type="bibr" rid="B27">Ellen MacArthur Foundation, 2024</xref>). Nevertheless, in all cases, Circular Economy is focused on the recovery of what is now considered waste to increase sustainability, developing a novel economy based on the paradigm of materials circularity within the production circle, avoiding the increasing generation of waste.</p>
<p>An important point when considering the environmental sustainability of new configurations of biorefineries is their analysis using powerful tools as Life Cycle Assessment (LCA). Although its application to complex biorefineries is still in an incipient point, several examples can be already found in literature. For instance, <xref ref-type="bibr" rid="B36">Gaffey et al. (2024)</xref> presents an excellent review of 59 preliminary LCA performed in different biorefineries. Since some of them are quite simple, it is evident that the amount of data necessary to perform rigorous analysis in more complex installations is still not available. Being some of these complex biorefineries in the designing stage, to obtain reliable and consistent conclusions about the environmental benefits of them will be one of the main lacks to cover in future research (<xref ref-type="bibr" rid="B53">Mart&#xed;nez-Arce et al., 2024</xref>).</p>
<p>The use of renewable materials and biodegradable products, the energy efficiency and the use of renewable sources of energy, coupled with pollution prevention, are some of the principles that Circular Economy and biomaterials have in common. In this context, the concept of biorefinery appears as a new installation including several processes to maximise energy and biomaterials recovery. A biorefinery is defined as &#x201c;an industrial facility (or a network of facilities) that utilizes biomass as raw material for the sustainable production of a wide range of marketable products and energy&#x201d; (<xref ref-type="bibr" rid="B21">Cherubini, 2010</xref>). More specifically, if energy and bioproducts are simultaneously produced, biorefineries achieve a high level of sustainability (<xref ref-type="bibr" rid="B58">Molina-Pe&#xf1;ate et al., 2022</xref>). Additionally, it is noteworthy to note that biorefineries also present an excellent opportunity to recycle waste and by-products from industrial processes, which gives biorefineries the possibility of using locally available materials, being this point another important advantage. This review highlights the importance of two technologies for organic waste-based biorefineries: on one hand, the consolidation of anaerobic digestion (AD) as a provider of renewable energy and, on the other hand, the emerging role of solid-state fermentation (SSF) as a novel strategy to obtain a wide variety of bioproducts of added-value from organic waste and side products. Besides, in second term, AD is as a producer of digestate, an organic material that can be further processed in the biorefinery. The exponential presence that AD (<xref ref-type="bibr" rid="B29">European Biogas Association, 2022</xref>) will have in the overall picture of renewable energy, as a source of locally available raw materials, will result in an increasing amount of digestate, being an excellent starting material for SSF in the production of new biomaterials. Therefore, the success in the complementarity of both biotechnologies is a critical factor for the development of a future generation of biorefineries, which maximize the production of renewable energy and bioproducts substituting its chemically-produced twins.</p>
</sec>
<sec id="s3">
<title>2 Classification of biorefineries</title>
<p>Biorefineries use organic waste and biomass as input material. The heterogeneity of these materials according to its seasonal (quality and quantity) and geographical variations and source diversity, makes impossible to have a unique classification of biorefineries. This fact, jointly with the continuous evolution of biorefinery definition, has resulted in a classification that is periodically reviewed. The International Energy Agency proposes four categories to classify biorefineries (<xref ref-type="bibr" rid="B6">Annevelink et al., 2022</xref>):<list list-type="simple">
<list-item>
<p>1) <italic>Related to feedstock</italic>: it can be classified as primary biomass and secondary biomass. Primary biomass corresponds to feedstock from agriculture, marine, forestry and nature management. Secondary biomass corresponds to the residues produced from the use of primary biomass. <xref ref-type="table" rid="T1">Table 1</xref> presents the main subcategories included in primary and secondary biomass, according to this classification. It is important to clarify that biorefineries can work on these two different types of biomass, being primary biomass raw materials whereas secondary biomass are biomass-derived waste (<xref ref-type="bibr" rid="B47">Lago et al., 2019</xref>; <xref ref-type="bibr" rid="B7">Anvari et al., 2024</xref>). Considering these different types, it is also worthwhile to mention that the technologies used in the corresponding biorefineries should be adapted for a proper performance.</p>
</list-item>
<list-item>
<p>2) <italic>Related to the conversion processes</italic>: probably the most relevant classification in technological terms. It refers to the transformations of input materials, which can include one or more of the following processes (<xref ref-type="fig" rid="F1">Figure 1</xref>): biochemical (aerobic conversion, anaerobic digestion, enzymatic process, fermentation and insect-based bioconversion), chemical (catalytic esterification, hydrogenation, hydrolysis, methanation, chemical pulping, steam reforming, water electrolysis and water gas shift), mechanical and thermomechanical (blending extraction, mechanical and thermomechanical disruption and fractionation, mechanical pulping and separation processes), or thermochemical (combustion, gasification, hydrothermal liquefaction, pyrolysis, supercritical conversion, torrefaction and carbonization) (<xref ref-type="bibr" rid="B6">Annevelink et al., 2022</xref>). In this sense, it is important to consider that all these conversion processes require energy and, sometimes, auxiliary materials. In consequence, Circular Economy principles must be applied to increase the sustainability of the entire biorefinery process, which gives AD a critical importance (<xref ref-type="bibr" rid="B35">Font and S&#xe1;nchez, 2021</xref>).</p>
</list-item>
<list-item>
<p>3) <italic>Related to the platforms</italic>: the term platform chemicals is used to design those intermediates that are subsequently transformed into various other higher value-added products. Several materials have been proposed as platform chemicals, although this list is again continuously updated, it includes: biochar, bio-coal, bio-crude, biogas, bio-oils, bio-hydrogen, bio-Naphtha, C5/C6 sugars, carbon dioxide, lignin, oils, organic fibres, organic juice, protein, pyrolytic liquid, starch, syngas, and others (<xref ref-type="bibr" rid="B81">Takkellapati et al., 2018</xref>).</p>
</list-item>
<list-item>
<p>4) <italic>Related to the final products</italic>: as biorefinery outputs include marketable products and energy, they categorize biorefineries as producers of chemicals, energy products, material products, food and animal feed, among others.</p>
</list-item>
</list>
</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Classification of biorefineries according to feedstock.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Feedstock biorefinery</th>
<th align="center">Primary biomass</th>
<th align="center">Secondary biomass</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td rowspan="7" align="left">Biomass</td>
<td align="center">Aquatic biomass</td>
<td align="center">Microbial biomass</td>
</tr>
<tr>
<td align="center">Lignocellulosic waste from croplands and grasslands</td>
<td align="center">Residues from agriculture</td>
</tr>
<tr>
<td align="center">Lignocellulosic woof/forestry</td>
<td align="center">Residues from aquatic biomass</td>
</tr>
<tr>
<td align="center">Oil crops</td>
<td align="center">Residues from forestry and forestry industry</td>
</tr>
<tr>
<td align="center">Starch crops</td>
<td align="center">Residues from landscape management</td>
</tr>
<tr>
<td align="center">Sugar crops</td>
<td align="center">Residues from recycled bio-based products</td>
</tr>
<tr>
<td align="center">Other primary biomass</td>
<td align="center">Other organic residues</td>
</tr>
</tbody>
</table>
</table-wrap>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Classification of biorefineries according to obtained bioproducts.</p>
</caption>
<graphic xlink:href="fceng-06-1463785-g001.tif"/>
</fig>
<p>As a result of this classification, lignocellulosic materials are the main feedstock, sugars are the dominant platform, and bioethanol is the main targeted product, although this situation is quickly evolving in accordance to bioproducts that are more interesting, especially those coming from SSF (<xref ref-type="bibr" rid="B61">Oiza et al., 2022</xref>).</p>
</sec>
<sec id="s4">
<title>3 Key technologies in biorefineries</title>
<sec id="s4-1">
<title>3.1 AD as a source of renewable energy</title>
<p>AD is a series of biological processes in which microorganisms break down biodegradable material in the absence of oxygen. The products of this process are biogas, mainly composed of methane and carbon digestate, liquid digestate and solid digestate (<xref ref-type="bibr" rid="B49">Lora-Granado et al., 2017</xref>). AD is a well-known process, implemented at full-scale from decades in a large number of facilities for the treatment of a wide variety of organic waste and mixtures (co-digestion), in which the main objective is the production of biogas as a source of renewable energy (<xref ref-type="bibr" rid="B28">Esposito et al., 2012</xref>).</p>
<p>In the context of modern biorefineries, anaerobic digestion has a main role: the transformation of substrates and the production of biogas as energy source. In essence, AD is a key technology to decrease the carbon footprint of any biorefinery, and it is the responsible for having a positive energy balance because of the production of biogas (<xref ref-type="bibr" rid="B43">Hagman et al., 2018</xref>). Due to the versatility of biogas, anaerobic digestion is an essential key technology for Circular Bioeconomy, by reducing energy dependence, promoting organic waste circularity and increasing local economy (<xref ref-type="bibr" rid="B35">Font and S&#xe1;nchez, 2021</xref>). The relationship between biogas and biorefineries indicates that several specific added values can result from this association, thus making the system more resilient and versatile.</p>
<p>As commented, biogas plays an important role in the configuration in most of biorefinery schemes. Actually, biogas is the main source of energy to cover the needs of these installations. In this sense, biorefineries rely on anaerobic digestion to be feasible from the technical, environmental and economic point of view. Recently, some examples can be found in which heat is also used to cover some external energy needs as district heating schemes (<xref ref-type="bibr" rid="B86">Weinand et al., 2019</xref>; <xref ref-type="bibr" rid="B55">Millati et al., 2023</xref>).</p>
<p>As a source of renewable energy for the biorefinery, biogas is typically pre-treated to remove some pollutants such as hydrogen sulphide or siloxanes (<xref ref-type="bibr" rid="B84">Vali et al., 2023</xref>) and burned on-site through co-generation devices to produce two types of energy: electricity and heat, which can be internally or externally used (<xref ref-type="bibr" rid="B67">Picardo et al., 2019</xref>). More recently, several technologies are being studied to transform the carbon dioxide contained in biogas to methane with the use of green hydrogen, to have a highly concentrated methane that can be compressed and pumped to the existing gas natural grids. This is the case of biogas upgrading, using membranes or biological processes as biomethanation (<xref ref-type="bibr" rid="B64">Paniagua et al., 2022</xref>; <xref ref-type="bibr" rid="B38">Gkotsis et al., 2023</xref>).</p>
<p>Besides, biogas, can be used as raw material to obtain valuable products instead of energy. Indeed, it has been demonstrated, up to pilot scale, the bioconversion of the CH<sub>4</sub> present in biogas into bulk commodities such as polyhydroxybutyrate (PHA), methanol, single cell protein or ectoine (<xref ref-type="bibr" rid="B66">P&#xe9;rez et al., 2022</xref>).</p>
<p>In summary, the role of AD in biorefineries and, by extension, in Circular Bioeconomy is crucial in terms of technical, economic and environmental performance. The flexibility of AD to treat a multitude of organic feedstock, while producing renewable energy, make it an essential biotechnology for a large number of biorefinery typologies and configurations (<xref ref-type="bibr" rid="B32">Fagerstr&#xf6;m et al., 2018</xref>).</p>
</sec>
<sec id="s4-2">
<title>3.2 SSF as a source of bioproducts</title>
<sec id="s4-2-1">
<title>3.2.1 Solid-state vs. submerged fermentation</title>
<p>The classical scientific definition of SSF was presented by <xref ref-type="bibr" rid="B63">Pandey (2003)</xref> as: &#x201c;the fermentation involving solids in absence (or near absence) of free water; however, substrate must possess enough moisture to support growth and metabolism of microorganisms&#x201d;. However, in practical terms, a new definition including the paradigm of Circular Bioeconomy can be also considered: &#x201c;The biological solid-state aerobic transformation of organic biodegradable waste into bioproducts that permits the substitution of raw sources of materials and energy&#x201d; (<xref ref-type="bibr" rid="B61">Oiza et al., 2022</xref>). In both cases, it is evident that SSF and SmF diverge in critical points, which in some cases may be considered advantages and disadvantages depending on the bioproduct to be obtained, and its formulation. In fact, formulation is of especial relevance with bioproducts that need complex down-stream processes such as biosurfactants or enzymes to be further commercialized (<xref ref-type="bibr" rid="B3">Al-Ghamdi et al., 2022</xref>; <xref ref-type="bibr" rid="B4">Amador Morilla et al., 2023</xref>). <xref ref-type="table" rid="T2">Table 2</xref> summarizes some of these items according to some of the most significant works published on SSF in the literature treating the challenges of this biotechnology (<xref ref-type="bibr" rid="B63">Pandey, 2003</xref>; <xref ref-type="bibr" rid="B56">Mitchell et al., 2006</xref>; <xref ref-type="bibr" rid="B14">Casciatori and Thomeo, 2018</xref>; <xref ref-type="bibr" rid="B61">Oiza et al., 2022</xref>). In the current scenario, probably the use of organic waste and the minimal water requirements are the main advantages of SSF, while mass and heat transfer are its main challenges when comparing SSF and SmF (<xref ref-type="bibr" rid="B61">Oiza et al., 2022</xref>). Nevertheless, an important point often neglected in both fermentation typologies is down-stream. This is an evident flaw in research, as sometimes this part is neither assessed nor discussed and it can suppose more than half of the costs and environmental impacts of the global process, which is highly relevant when biorefineries are designed (<xref ref-type="bibr" rid="B16">Catal&#xe1;n and S&#xe1;nchez, 2020</xref>).</p>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>Advantages and disadvantages of submerged vs. solid-state fermentation.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="center">Solid-state fermentation</th>
<th align="center">Submerged fermentation</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="center">No need of extra water</td>
<td align="center">The process takes place submerged in water, which must be added</td>
</tr>
<tr>
<td align="center">No generation of wastewater</td>
<td align="center">Water must be treated and/or recirculated</td>
</tr>
<tr>
<td align="center">Some microorganisms grow better in solid matrices (especially fungi)</td>
<td align="center">Some microorganisms grow better in liquid matrices (especially bacteria)</td>
</tr>
<tr>
<td align="center">Nutrient concentration gradients can occur</td>
<td align="center">No nutrient concentration gradients (except in specific configurations)</td>
</tr>
<tr>
<td align="center">Three phases coexist in the solid: gas (air), solid and liquid (biofilm)</td>
<td align="center">The liquid is a continuous phase, which includes the entire system</td>
</tr>
<tr>
<td align="center">Inoculation is a possibility, autochthonous microbial communities can properly work</td>
<td align="center">Microorganism must be inoculated, usually pure strains</td>
</tr>
<tr>
<td align="center">Microorganisms grow on the surface of the solid matrix or in its pores. Mixing is difficult</td>
<td align="center">Microorganisms and substrates are uniformly distributed in the culture media. Mixing is necessary but easy</td>
</tr>
<tr>
<td align="center">Oxygen uptake can come from oxygen gas by microorganisms</td>
<td align="center">Oxygen must be first dissolved in water, this can imply oxygen limitation and more energy for aeration</td>
</tr>
<tr>
<td align="center">Removal of metabolic heat is difficult, self-heating is usual</td>
<td align="center">Temperature is an easily controllable parameter</td>
</tr>
<tr>
<td align="center">Online control is difficult in critical parameters</td>
<td align="center">Online control is feasible is most cases</td>
</tr>
<tr>
<td align="center">Down-stream process (extraction of the pure bioproduct) can be difficult or result in low yields</td>
<td align="center">Although down-stream can be technically difficult and costly, specific literature is available</td>
</tr>
<tr>
<td align="center">Solid waste can be used as substrate, and only if necessary pure substrates are added</td>
<td align="center">Usually performed using defined culture media (pure substrates)</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s4-2-2">
<title>3.2.2 Main features of SSF</title>
<p>Among bio-based technologies, SSF plays an important role, and feedstock properties and composition are key parameters for the process performance. In fact, the solid matrix can have two different roles in SSF: it can be the source of nutrients for the target microorganisms or an inert material with a proper structure to support the growth of microorganisms, which retains a solution containing the required nutrients.</p>
<p>Regarding microorganisms, several strategies are possible and its application depends on specific technical and logistic issues. In some cases, a consortium of microorganisms can be used, which can be autochthonous or externally enriched (<xref ref-type="bibr" rid="B46">Krishna, 2005</xref>). However, SSF is mainly conducted by a specific strain selected and inoculated according to the desired product, under sterile or near-to sterile conditions (<xref ref-type="bibr" rid="B77">S&#xe1;nchez, 2022</xref>). Down-stream can be also a critical point in SSF. Therefore, the extraction of some bioproducts from the solid matrix can be considerably complex, and it usually contributes to process cost and environmental impact to a large extent (<xref ref-type="bibr" rid="B15">Catal&#xe1;n et al., 2019</xref>). This step can be avoided in some cases where the bioproduct can be used embedded in the solid matrix. <xref ref-type="fig" rid="F2">Figure 2</xref> presents the main inputs and outputs of the SSF process. Factors influencing the process and the main types of SSF reactors are also included, being packed-bed reactors the most commonly used (<xref ref-type="bibr" rid="B57">Mitchell et al., 2023</xref>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Solid-state fermentation: influencing factors, bioreactor typologies, organic substrates and microorganisms.</p>
</caption>
<graphic xlink:href="fceng-06-1463785-g002.tif"/>
</fig>
</sec>
<sec id="s4-2-3">
<title>3.2.3 Substrates, microorganisms and bioproducts</title>
<p>Microorganisms (including bacteria, yeast and fungi) and organic substrates are the most important factors to consider in the SSF process (<xref ref-type="bibr" rid="B80">Soccol et al., 2017</xref>). In the case of the target bioproduct it is especially relevant to determine the process economic viability and environmental performance.</p>
<p>Among the different microorganisms used in SSF, filamentous fungi have gained relevance as solid substrates reproduce their natural habitat (<xref ref-type="bibr" rid="B40">Gowthaman et al., 2001</xref>). Nevertheless, yeasts and some species of bacteria have been also successfully cultivated in solid matrices. Regarding substrates, probably the most commonly used are agricultural, agro-industrial, forestry biomass and food-processing waste. Similarly to other biotechnologies as composting and anaerobic digestion, different typologies of waste can be combined to balance nutrients or to fix the lacks that a single residual material may present. The porosity of the solid matrix is also a critical property in SSF as it governs the oxygen transfer and it often results in the requirement of additional bulking agents (<xref ref-type="bibr" rid="B74">Sala et al., 2021</xref>). <xref ref-type="table" rid="T3">Table 3</xref> summarizes some very recent representative examples of SSF processes and their role in selected biorefineries. This table must be considered a snapshot of a specific time, since the variety of bioproducts obtained through SSF is continually increasing (<xref ref-type="bibr" rid="B23">Cuadrado-Osorio et al., 2022</xref>; <xref ref-type="bibr" rid="B61">Oiza et al., 2022</xref>; <xref ref-type="bibr" rid="B68">Prabhu et al., 2022</xref>).</p>
<table-wrap id="T3" position="float">
<label>TABLE 3</label>
<caption>
<p>Bioproducts obtained from solid-state fermentation in proposed biorefineries.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Feedstock</th>
<th align="center">Bioproduct</th>
<th align="center">Development</th>
<th align="center">Biorefinery description</th>
<th align="center">Reference</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="center">Biowaste</td>
<td align="center">Biopesticides, bioplastics</td>
<td align="center">Pilot scale (techno-economical assessment included)</td>
<td align="left">Biowaste is enzymatically hydrolysed: the liquid fraction is used as enriched-sugar feed for bioplastics production and the solid fraction for biopesticides production through SSF</td>
<td align="center">
<xref ref-type="bibr" rid="B59">Molina-Pe&#xf1;ate et al. (2024)</xref>
</td>
</tr>
<tr>
<td align="center">Cereal waste</td>
<td align="center">Nutraceuticals, biofuels, enzymes, fertilizers, nanoparticles</td>
<td align="center">Review</td>
<td align="left">Cereal waste is used a raw material for SSF to produce &#x3b1;-amylase. Several bioproducts from different biorefinery configurations are explored</td>
<td align="center">
<xref ref-type="bibr" rid="B73">Sahu et al. (2024)</xref>
</td>
</tr>
<tr>
<td align="center">Distiller&#x2019;s dried grains (bioethanol)</td>
<td align="center">Crude extract with lipolytic activity and fatty acid ethyl esters</td>
<td align="center">Pilot scale (reusability of the product is assessed)</td>
<td align="left">The extract of bioethanol waste was used after SSF to catalyze esterification reactions related to the biodiesel production, in a biorefinery concept</td>
<td align="center">
<xref ref-type="bibr" rid="B2">Aguieiras et al. (2024)</xref>
</td>
</tr>
<tr>
<td align="center">Brewery spent grain</td>
<td align="center">Organic acids, bacteriocins, microbial biosurfactants</td>
<td align="center">Lab scale (mass balance included)</td>
<td align="left">Brewery spent grain was pre-treated with ionic liquid and further SSF using an enzymatic cocktail results in fermentable sugar-containing solutions from which the production of organic acids, bacteriocins, and microbial biosurfactants was obtained</td>
<td align="center">
<xref ref-type="bibr" rid="B62">Outeiri&#xf1;o et al. (2024)</xref>
</td>
</tr>
<tr>
<td align="center">Lignocellulosic hydrolysate</td>
<td align="center">Biofuels</td>
<td align="center">Lab scale (use of overexpressing strains)</td>
<td align="left">A closed-loop strategy for integrated enzyme production using internally produced lignocellulosic sugars from biorefinery plants with the aim of obtaining biofuels and chemicals</td>
<td align="center">
<xref ref-type="bibr" rid="B88">Zhao et al. (2024)</xref>
</td>
</tr>
<tr>
<td align="center">Kans grass biomass</td>
<td align="center">Nanocatalyst, cellulolytic enzymes, fermentable sugars</td>
<td align="center">Lab scale</td>
<td align="left">A carbon-based nanocatalyst using Kans grass biomass as substrate for SSF was obtained for its use in sugar production</td>
<td align="center">
<xref ref-type="bibr" rid="B79">Singh et al. (2023)</xref>
</td>
</tr>
<tr>
<td align="center">Agricultural digestate</td>
<td align="center">Esterase</td>
<td align="center">Lab scale (optimization of SSF conditions)</td>
<td align="left">Cellulase and esterase were produced by <italic>Trichoderma asperellum</italic> digestate-based substrate in SSF. Enzymes useful for biofuels productions</td>
<td align="center">
<xref ref-type="bibr" rid="B12">Bulgari et al. (2023)</xref>
</td>
</tr>
<tr>
<td align="center">Pretreated sugarcane bagasse</td>
<td align="center">Bioemulsifier</td>
<td align="left"/>
<td align="left">SSF after alkaline hydrodynamic cavitation pretreatments were used to improve bioemulsufier production (identified as mannitol and arabitol-type liamocin)</td>
<td align="center">
<xref ref-type="bibr" rid="B25">de Costa et al. (2023)</xref>
</td>
</tr>
<tr>
<td align="center">Food waste</td>
<td align="center">Biosurfactant</td>
<td align="center">Fed-batch bioreactor scale</td>
<td align="left">Rhamnolipids from food waste digestate are produced by SmF and recirculated to enhance AD process performance</td>
<td align="center">
<xref ref-type="bibr" rid="B44">Johnravindar et al. (2022)</xref>
</td>
</tr>
<tr>
<td align="center">Mixture of agro-waste</td>
<td align="center">Bioethanol</td>
<td align="center">Theoretical full-scale biorefinery with energy balance</td>
<td align="left">Dried digestate with surplus energy from biogas combustion is used in SSF to produce reducing sugars for bioethanol fermentation</td>
<td align="center">
<xref ref-type="bibr" rid="B76">Sambusiti et al. (2016)</xref>
</td>
</tr>
<tr>
<td align="center">Sewage Sludge</td>
<td align="center">Several bioproducts</td>
<td align="center">Review</td>
<td align="left">Highlights the possibilities of different types of sewage sludge for the production through SSF of polyhydroxyalkanoates, proteins, biopesticides, enzymes, solvents and biofuels</td>
<td align="center">
<xref ref-type="bibr" rid="B17">Cecconet and Capodaglio (2022)</xref>
</td>
</tr>
<tr>
<td align="center">Textile waste (cotton)</td>
<td align="center">Bioethanol Ethylene glycol, dimethyl terephthalate</td>
<td align="center">Theoretical full-scale simulated biorefinery scenarios with economic assessment</td>
<td align="left">After chemical pretreatment, the cotton part is enzymatically hydrolyzed and fermented through simultaneous saccharification and fermentation</td>
<td align="center">
<xref ref-type="bibr" rid="B33">Farahmandpour et al. (2022)</xref>
</td>
</tr>
<tr>
<td align="center">Food waste</td>
<td align="center">Lactic acid</td>
<td align="center">Lab scale</td>
<td align="left">Lactic acid production from food waste with digestate recirculation and sucrose supplementation</td>
<td align="center">
<xref ref-type="bibr" rid="B11">B&#xfc;hlmann et al. (2023)</xref>
</td>
</tr>
<tr>
<td align="center">Biowaste</td>
<td align="center">Bioenergy, microbial protein, lactic and succinic acid</td>
<td align="center">Lab scale</td>
<td align="left">Different biorefinery platforms were scrutinized using life cycle assessment. The results demonstrated that all the developed scenarios were eco-friendly solutions</td>
<td align="center">
<xref ref-type="bibr" rid="B45">Khoshnevisan et al. (2020)</xref>
</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>From <xref ref-type="table" rid="T3">Table 3</xref> and other existing literature, some conclusions can be summarized regarding the incipient role of SSF in recently designed biorefineries:<list list-type="simple">
<list-item>
<p>a) There is a clear absence of full-scale studies, being this one of the main challenges for SSF implementation, as commented later.</p>
</list-item>
<list-item>
<p>b) SSF works are focused on the process itself, with a high level of detail in the fermentation conditions, strain screening and optimization. However, the integration of SSF in the entire biorefinery scheme is usually commented from a theoretical perspective.</p>
</list-item>
<list-item>
<p>c) SSF down-stream to obtain the bioproduct of interest is rarely considered. This is an important gap in scientific literature, although the complexity of this process is highly dependent on the nature of the obtained bioproduct and its potential use.</p>
</list-item>
<list-item>
<p>d) Biorefineries are supposed to be environmentally friendly installations, but this is only occasionally studied using accepted tools as Life Cycle Assessment. Their carbon footprint, which should be decreased with the use of AD is only theoretically considered (<xref ref-type="bibr" rid="B39">Gnansounou and Pandey, 2017</xref>).</p>
</list-item>
<list-item>
<p>e) Similarly, only few studies have some kind of economic assessment. This is surprising in the sense that biorefineries are closely related to Circular Economy.</p>
</list-item>
<list-item>
<p>f) A large number of studies are reviews or perspective papers. Although useful and somewhat convincing, they confirm the need of experimental data to develop realistic process, with their advantages and disadvantages.</p>
</list-item>
<list-item>
<p>g) Biofuels and enzymes are still the most studied products to involve SSF in a biorefinery scheme, typically for the hydrolysis of lignocellulosic waste leading to fermentable sugars.</p>
</list-item>
</list>
</p>
</sec>
<sec id="s4-2-4">
<title>3.2.4 SSF challenges</title>
<p>Heat and mass transfer limitations are probably the most important challenges that SSF is currently facing for its successful implementation in full-scale biorefineries, being this a well know problem from the very beginning of SSF, when practically its unique application was in the food industry (<xref ref-type="bibr" rid="B48">Lonsane et al., 1992</xref>). Since then, several strategies have been presented in scientific literature to overcome this problem.</p>
<p>Bioreactors design is one of the most commonly used approaches to move SSF towards the scale of few kilograms. Accordingly, several novel reactor configurations have been proposed (<xref ref-type="bibr" rid="B56">Mitchell et al., 2006</xref>) to overcome typical problems of SSF such as temperature increase due to an inefficient heat and mass transfer in solid matrices (<xref ref-type="bibr" rid="B14">Casciatori and Thomeo, 2018</xref>). Among these configurations, probably tray reactors are gaining attention as they perform properly with fungi (<xref ref-type="bibr" rid="B78">Sent&#xed;s-Mor&#xe9; et al., 2023</xref>). Tray reactors present improved heat and mass transfer when compared to typical packed-bed reactors (<xref ref-type="bibr" rid="B57">Mitchell et al., 2023</xref>). However, their implementation at full-scale is scarcely reported (<xref ref-type="bibr" rid="B75">Sala et al., 2022</xref>), at least when considering scientific publications. In the case of patents, some of them can be found, with different approaches to overcome some problems related to SSF (<xref ref-type="bibr" rid="B50">L&#xfc;th and Eiben, 2003</xref>; <xref ref-type="bibr" rid="B85">Vitanen et al., 2011</xref>; <xref ref-type="bibr" rid="B69">Ranganathan, 2014</xref>; <xref ref-type="bibr" rid="B5">Andersen et al., 2015</xref>; <xref ref-type="bibr" rid="B41">Granucci and Granato Billas Boas, 2019</xref>; <xref ref-type="bibr" rid="B10">Bobbiesi, 2019</xref>). Unfortunately, it is not possible to know if these patents have been transformed into real industrial SSF bioreactors. Another potential indirect strategy to increase the production without changing the reactor volume is the use of sequential batch reactors. In this case, positive results have been obtained in the production of biopesticides, aromas and enzymes through SSF at pilot scale (<xref ref-type="bibr" rid="B18">Cerda et al., 2017</xref>; <xref ref-type="bibr" rid="B52">Mart&#xed;nez et al., 2018</xref>; <xref ref-type="bibr" rid="B74">Sala et al., 2021</xref>). However, the integration of this strategy in a full-scale biorefinery seems again complicated, as it should coexist with other purely continuous process such as anaerobic digestion. In close relationship with all the problems related to SSF scale-up is the absence of robust mathematical models that permit the simulation and prediction of processes at any scale. In this sense, some attempts have been published with the use of simplified models (<xref ref-type="bibr" rid="B13">Casciatori et al., 2016</xref>; <xref ref-type="bibr" rid="B34">Fonseca et al., 2017</xref>), but the complexity of SSF is enough to consider other approaches such as data driven modelling, which already has been applied in solid-state biological processes such as composting (<xref ref-type="bibr" rid="B8">Aidyn Temel et al., 2023</xref>; <xref ref-type="bibr" rid="B42">Gupta et al., 2024</xref>).</p>
<p>However, and despite these efforts, it is evident that scale-up is still the main problem to solve in SSF, especially when coupled with other technologies in complex biorefinery schemes.</p>
<p>Although less studied, another potential main challenge of SSF regarding its implementation in biorefineries is the down-stream and purification of the target bioproduct once the biological process is considered finished. This point presents a significant difference with SmF, as the time when the maximum concentration is reached in the SSF of some bioproducts does not coincide with the fermentation end point, that is, the point at which substrate is completely depleted. For instance, this is the case of the SSF production of biopesticides and biostimulants (<xref ref-type="bibr" rid="B70">Rodr&#xed;guez et al., 2019</xref>; <xref ref-type="bibr" rid="B37">Ghoreishi et al., 2023</xref>). This fact can result in complex multi-step down-stream processes, whose cost can reach up to 70% of the entire SSF process cost (<xref ref-type="bibr" rid="B15">Catal&#xe1;n et al., 2019</xref>). In some cases, the extraction of some products, such as biosurfactants, can involve the use of organic environmentally unfriendly solvents (<xref ref-type="bibr" rid="B26">Dolman et al., 2019</xref>), which is against the biorefinery concept.</p>
<p>This notwithstanding, in some applications, the fermented exhaust solid can be directly used as the final product, thus avoiding expensive and highly environmental impact down-stream and purification process. There are some excellent examples in which this situation occurs, as the process of biodiesel synthesis using lipases produced through the SSF process of organic waste rich in fats or oils (<xref ref-type="bibr" rid="B1">Aguieiras et al., 2018</xref>).</p>
</sec>
</sec>
</sec>
<sec id="s5">
<title>4 Composting and SSF in zero-waste biorefineries</title>
<p>One of the main objectives of modern biorefineries is to have a zero-waste process. Achieving this goal has large benefits in technical, environmental and economic terms (<xref ref-type="bibr" rid="B72">Sachdeva et al., 2022</xref>). In this framework, composting is a suitable technology as it permits a wide variety of raw materials to end up in an organic amendment. It is important to note that, sometimes, it is forgotten that composting was one of the first approaches to circular bioeconomy and this role remains intact (<xref ref-type="bibr" rid="B30">European Compost Network, 2024</xref>). Recently, composting has gain more interest when complemented with AD and SSF. Both processes result in organic exhaust material that is neither stable nor mature for some soil applications or for most of the horticultural uses. In this case, composting seems the most adequate strategy, especially for SSF exhaust matrices and the solid fraction of digestate.</p>
<p>In case of AD digested materials, composting has been largely studied to transform digestate into compost with enough stability (<xref ref-type="bibr" rid="B22">Col&#xf3;n et al., 2017</xref>). Besides, other advantages of composting have been highlighted to obtain an improved organic amendment with a better environmental performance: nutrient mineralization and humification, decrease of ammonia emissions and, obviously, a considerable shortening in the composting process and a decrease of aeration requirements (<xref ref-type="bibr" rid="B20">Chen et al., 2023</xref>; <xref ref-type="bibr" rid="B24">Czeka&#x142;a et al., 2023</xref>).</p>
<p>In the case of SSF, its complementarity with AD is beyond energy or compost production. However, the research on the use of exhaust solid waste after obtaining the product of interest is much scarcer. Anyway, two main trends can be observed in recent literature. On one hand, if the bioproduct has application to soil, SSF and composting simultaneously occur and the resulting product is stable enough, as in the case of some biopesticides and biostimulants (<xref ref-type="bibr" rid="B9">Ballardo et al., 2017</xref>; <xref ref-type="bibr" rid="B37">Ghoreishi et al., 2023</xref>). On the other hand, when a product is extracted from the fermented solid, composting can be a proper technology to obtain a compost-like product, to finally reach a zero waste process. In other cases, digestate can act as raw material to produce hydrolytic enzymes or biosurfactants from organic waste through SSF (<xref ref-type="bibr" rid="B51">Mar&#xed;n et al., 2018</xref>; <xref ref-type="bibr" rid="B19">Cerda et al., 2019</xref>). Some of these bioproducts can also act as additives to improve AD biogas yields, which is a novel concept of biorefinery that maximises the energy production without using external materials such as biochar or nutrients (<xref ref-type="bibr" rid="B71">Romero-G&#xfc;iza et al., 2016</xref>; <xref ref-type="bibr" rid="B65">Parra-Orobio et al., 2023</xref>). For instance, in the case of biosurfactants obtained from municipal solid waste through SSF, the strategy is highly beneficial, as some of these bioproducts are reported to enhance the production of biogas in AD, as the case of sophorolipids (<xref ref-type="bibr" rid="B87">Xu et al., 2019</xref>; <xref ref-type="bibr" rid="B60">Oiza et al., 2024</xref>). In the case of certain enzymes, they are also reported to act as enzymatic cocktails to shorten the hydrolytic limiting step of AD when treating complex substrates as the source-selected organic fraction of municipal solid waste (<xref ref-type="bibr" rid="B54">Mart&#xed;nez-Valdez et al., 2017</xref>).</p>
</sec>
<sec sec-type="conclusion" id="s6">
<title>5 Conclusion</title>
<p>Biorefineries are called to be advanced substitutes for waste and wastewater treatment plants, in a context where Circular Economy paradigms may be implemented to the detriment of linear strategies, which result in poor recovery of energy and material resources and a high generation of waste to be disposed of. In this framework, modern biorefineries should implement novel biotechnologies, such as SSF, which is in line with the basic principle of circularity: transform waste into raw and profitable materials. SSF needs research and reliable strategies of scaling-up to be a reality in the biorefineries of the next future, to take profit of its huge potential. However, the role of traditional technologies as AD or composting must not be diminished. Particularly, AD will be the main process to provide renewable energy to these facilities, while reducing their carbon footprint. Composting, as a way to produce a stable organic amendment for soil application, must be considered complementary to AD and SSF, with a high relevance in achieving zero-waste processes. In any case, it is evident that these new configurations of biorefineries should be environmentally evaluated with specific tools such as LCA. In summary, the exponential increase of AD (and inherently digestate) will result in a considerable change in the waste management overall picture, which will place AD, SSF and its complementarity in a key position regarding the success of future organic waste-based biorefineries, which should be optimized in terms of renewable energy generation and the variety of bioproducts that may be substitutes of their chemical alternatives.</p>
</sec>
</body>
<back>
<sec id="s7">
<title>Author contributions</title>
<p>AA: Writing&#x2013;review and editing, Investigation, Conceptualization. XF: Writing&#x2013;review and editing, Validation, Investigation, Conceptualization. JM-V: Writing&#x2013;review and editing, Validation, Investigation, Conceptualization. AS: Writing&#x2013;review and editing, Writing - original draft, Validation, Supervision, Investigation, Conceptualization.</p>
</sec>
<sec sec-type="funding-information" id="s8">
<title>Funding</title>
<p>The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This research was funded by the Spanish Ministerio de Ciencia, Innovaci&#xf3;n y Universidades, grant number PID 2023-146978OB-I00 (Project Solstice).</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
<p>The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.</p>
</sec>
<sec sec-type="disclaimer" id="s10">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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