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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Cell. Neurosci.</journal-id>
<journal-title>Frontiers in Cellular Neuroscience</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Cell. Neurosci.</abbrev-journal-title>
<issn pub-type="epub">1662-5102</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fncel.2023.1268126</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Cellular Neuroscience</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Unveiling the interplay between NSAID-induced dysbiosis and autoimmune liver disease in children: insights into the hidden gateway to autism spectrum disorders. Evidence from <italic>ex vivo</italic>, <italic>in vivo</italic>, and clinical studies</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Mohamed</surname>
<given-names>Doaa I.</given-names>
</name>
<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
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<contrib contrib-type="author">
<name>
<surname>Abo Nahas</surname>
<given-names>Hebatallah H.</given-names>
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<xref rid="aff2" ref-type="aff"><sup>2</sup></xref>
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<name>
<surname>Elshaer</surname>
<given-names>Asmaa M.</given-names>
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<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
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<name>
<surname>El-Waseef</surname>
<given-names>Dalia Alaa El-Din Aly</given-names>
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<xref rid="aff3" ref-type="aff"><sup>3</sup></xref>
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<name>
<surname>El-Kharashi</surname>
<given-names>Omnyah A.</given-names>
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<xref rid="aff1" ref-type="aff"><sup>1</sup></xref>
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<contrib contrib-type="author">
<name>
<surname>Mohamed</surname>
<given-names>Soha M. Y.</given-names>
</name>
<xref rid="aff4" ref-type="aff"><sup>4</sup></xref>
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<name>
<surname>Sabry</surname>
<given-names>Yasmine Gamal</given-names>
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<xref rid="aff4" ref-type="aff"><sup>4</sup></xref>
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<name>
<surname>Almaimani</surname>
<given-names>Riyad A.</given-names>
</name>
<xref rid="aff5" ref-type="aff"><sup>5</sup></xref>
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<contrib contrib-type="author">
<name>
<surname>Almasmoum</surname>
<given-names>Hussain A.</given-names>
</name>
<xref rid="aff6" ref-type="aff"><sup>6</sup></xref>
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<contrib contrib-type="author">
<name>
<surname>Altamimi</surname>
<given-names>Abdulmalik S.</given-names>
</name>
<xref rid="aff7" ref-type="aff"><sup>7</sup></xref>
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<contrib contrib-type="author">
<name>
<surname>Ibrahim</surname>
<given-names>Ibrahim Abdel Aziz</given-names>
</name>
<xref rid="aff8" ref-type="aff"><sup>8</sup></xref>
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<contrib contrib-type="author">
<name>
<surname>Alshawwa</surname>
<given-names>Samar Z.</given-names>
</name>
<xref rid="aff9" ref-type="aff"><sup>9</sup></xref>
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<name>
<surname>Jaremko</surname>
<given-names>Mariusz</given-names>
</name>
<xref rid="aff10" ref-type="aff"><sup>10</sup></xref>
<xref rid="c002" ref-type="corresp"><sup>&#x002A;</sup></xref>
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<contrib contrib-type="author">
<name>
<surname>Emwas</surname>
<given-names>Abdul-Hamid</given-names>
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<xref rid="aff11" ref-type="aff"><sup>11</sup></xref>
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<name>
<surname>Saied</surname>
<given-names>Essa M.</given-names>
</name>
<xref rid="aff12" ref-type="aff"><sup>12</sup></xref>
<xref rid="aff13" ref-type="aff"><sup>13</sup></xref>
<xref rid="c003" ref-type="corresp"><sup>&#x002A;</sup></xref>
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<aff id="aff1"><sup>1</sup><institution>Department of Clinical Pharmacology and Therapeutics, Faculty of Medicine, Ain Shams University</institution>, <addr-line>Cairo</addr-line>, <country>Egypt</country></aff>
<aff id="aff2"><sup>2</sup><institution>Physiology Department, Faculty of Science, Suez Canal University</institution>, <addr-line>Ismailia</addr-line>, <country>Egypt</country></aff>
<aff id="aff3"><sup>3</sup><institution>Department of Histology and Cell Biology, Faculty of Medicine, Ain Shams University</institution>, <addr-line>Cairo</addr-line>, <country>Egypt</country></aff>
<aff id="aff4"><sup>4</sup><institution>Physiology Department, Faculty of Medicine, Ain Shams University</institution>, <addr-line>Cairo</addr-line>, <country>Egypt</country></aff>
<aff id="aff5"><sup>5</sup><institution>Department of Biochemistry, Faculty of Medicine, Umm Al-Qura University</institution>, <addr-line>Makkah</addr-line>, <country>Saudi Arabia</country></aff>
<aff id="aff6"><sup>6</sup><institution>Department of Laboratory Medicine, Faculty of Applied Medical Sciences, Umm Al-Qura University</institution>, <addr-line>Makkah</addr-line>, <country>Saudi Arabia</country></aff>
<aff id="aff7"><sup>7</sup><institution>Department of Pharmaceutical Chemistry, College of Pharmacy, Prince Sattam Bin Abdulaziz University</institution>, <addr-line>Alkharj</addr-line>, <country>Saudi Arabia</country></aff>
<aff id="aff8"><sup>8</sup><institution>Department of Pharmacology and Toxicology, Faculty of Medicine, Umm Al-Qura University</institution>, <addr-line>Makkah</addr-line>, <country>Saudi Arabia</country></aff>
<aff id="aff9"><sup>9</sup><institution>Department of Pharmaceutical Sciences, College of Pharmacy, Princess Nourah bint Abdulrahman University</institution>, <addr-line>Riyadh</addr-line>, <country>Saudi Arabia</country></aff>
<aff id="aff10"><sup>10</sup><institution>Smart-Health Initiative and Red Sea Research Center, Division of Biological and Environmental Sciences and Engineering, King Abdullah University of Science and Technology</institution>, <addr-line>Thuwal</addr-line>, <country>Saudi Arabia</country></aff>
<aff id="aff11"><sup>11</sup><institution>Advanced Nanofabrication Imaging and Characterization Center, King Abdullah University of Science and Technology, Core Labs</institution>, <addr-line>Thuwal</addr-line>, <country>Saudi Arabia</country></aff>
<aff id="aff12"><sup>12</sup><institution>Chemistry Department, Faculty of Science, Suez Canal University</institution>, <addr-line>Ismailia</addr-line>, <country>Egypt</country></aff>
<aff id="aff13"><sup>13</sup><institution>Institute for Chemistry, Humboldt Universit&#x00E4;t zu Berlin</institution>, <addr-line>Berlin</addr-line>, <country>Germany</country></aff>
<author-notes>
<fn fn-type="edited-by" id="fn0001">
<p>Edited by: Nouha Bouayed Abdelmoula, University of Sfax, Tunisia</p>
</fn>
<fn fn-type="edited-by" id="fn0002">
<p>Reviewed by: Riadh Badraoui, Tunis El Manar University, Tunisia; Najla Halouani, Psychiatrist at Hedi Chaker University Hospital Sfax Tunisia, Tunisia</p>
</fn>
<corresp id="c001">&#x002A;Correspondence: Doaa I. Mohamed, <email>Doaapharma@med.asu.edu.eg</email></corresp>
<corresp id="c002">Mariusz Jaremko, <email>Mariusz.jaremko@kaust.edu.sa</email></corresp>
<corresp id="c003">Essa M. Saied, <email>essa.saied@science.suez.edu.eg</email></corresp>
</author-notes>
<pub-date pub-type="epub">
<day>31</day>
<month>10</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>17</volume>
<elocation-id>1268126</elocation-id>
<history>
<date date-type="received">
<day>27</day>
<month>07</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>28</day>
<month>09</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2023 Mohamed, Abo Nahas, Elshaer, El-Waseef, El-Kharashi, Mohamed, Sabry, Almaimani, Almasmoum, Altamimi, Ibrahim, Alshawwa, Jaremko, Emwas and M. Saied.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Mohamed, Abo Nahas, Elshaer, El-Waseef, El-Kharashi, Mohamed, Sabry, Almaimani, Almasmoum, Altamimi, Ibrahim, Alshawwa, Jaremko, Emwas and M. Saied</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Autism spectrum disorders (ASD) represent a diverse group of neuropsychiatric conditions, and recent evidence has suggested a connection between ASD and microbial dysbiosis. Immune and gastrointestinal dysfunction are associated with dysbiosis, and there are indications that modulating the microbiota could improve ASD-related behaviors. Additionally, recent findings highlighted the significant impact of microbiota on the development of autoimmune liver diseases, and the occurrence of autoimmune liver disease in children with ASD is noteworthy. In the present study, we conducted both an <italic>in vivo</italic> study and a clinical study to explore the relationship between indomethacin-induced dysbiosis, autoimmune hepatitis (AIH), and the development of ASD. Our results revealed that indomethacin administration induced intestinal dysbiosis and bacterial translocation, confirmed by microbiological analysis showing positive bacterial translocation in blood cultures. Furthermore, indomethacin administration led to disturbed intestinal permeability, evidenced by the activation of the NLRP3 inflammasomes pathway and elevation of downstream biomarkers (TLR4, IL18, caspase 1). The histological analysis supported these findings, showing widened intestinal tight junctions, decreased mucosal thickness, inflammatory cell infiltrates, and collagen deposition. Additionally, the disturbance of intestinal permeability was associated with immune activation in liver tissue and the development of AIH, as indicated by altered liver function, elevated ASMA and ANA in serum, and histological markers of autoimmune hepatitis. These results indicate that NSAID-induced intestinal dysbiosis and AIH are robust triggers for ASD existence. These findings were further confirmed by conducting a clinical study that involved children with ASD, autoimmune hepatitis (AIH), and a history of NSAID intake. Children exposed to NSAIDs in early life and complicated by dysbiosis and AIH exhibited elevated serum levels of NLRP3, IL18, liver enzymes, ASMA, ANA, JAK1, and IL6. Further, the correlation analysis demonstrated a positive relationship between the measured parameters and the severity of ASD. Our findings suggest a potential link between NSAIDs, dysbiosis-induced AIH, and the development of ASD. The identified markers hold promise as indicators for early diagnosis and prognosis of ASD. This research highlights the importance of maintaining healthy gut microbiota and supports the necessity for further investigation into the role of dysbiosis and AIH in the etiology of ASD.</p>
</abstract>
<kwd-group>
<kwd>autism spectrum disorders</kwd>
<kwd>NSAIDs</kwd>
<kwd>gut microbiota</kwd>
<kwd>dysbiosis</kwd>
<kwd>autoimmune hepatitis</kwd>
<kwd>inflammasomes</kwd>
<kwd>prognostic biomarkers</kwd>
<kwd>clinical study</kwd>
</kwd-group>
<counts>
<fig-count count="21"/>
<table-count count="1"/>
<equation-count count="0"/>
<ref-count count="112"/>
<page-count count="33"/>
<word-count count="19808"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Cellular Neuropathology</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="sec1">
<label>1.</label>
<title>Introduction</title>
<p>Autism spectrum disorders (ASD) are a complex array of neuropsychiatric conditions that can affect individuals in unique ways. These conditions are distinguished by difficulties in communication, social interactions and stereo-typed behavioral patterns. While the prevalence of ASD has increased significantly since its initial recognition, the current rate of 1 in 59 individuals affected by this condition is truly staggering, with a male predominance (<xref ref-type="bibr" rid="ref6">Baio et al., 2018</xref>). While the exact cause of ASD remains a mystery, researchers have identified genetic and environmental factors as potential contributors. In fact, it is estimated that up to 20% of ASD cases can be attributed to genetic factors alone (<xref ref-type="bibr" rid="ref3">Abrahams and Geschwind, 2008</xref>). Immune dysfunction and gastrointestinal inflammation are common occurrences in individuals with ASD, contributing to the intricate array of symptoms associated with the disorder (<xref ref-type="bibr" rid="ref10">Belkaid and Hand, 2014</xref>). The gut-brain axis represents a complex and dynamic physiological network through which gut microbiota interacts with the (CNS) via intricate neuronal, endocrine, and immunological signaling pathways. The communication between these two systems is bidirectional, and thus, the influence of the brain on the gut microbial content. The microbiota&#x2019;s role in autoimmune liver diseases has gained recognition in recent studies. Similarly, the influence of the intestinal microbiota on brain function also warrants further investigation. This intricate interplay between the gut and the brain involves multiple molecular mechanisms, including the production of various neuroactive substances such as neurotransmitters, neuropeptides, and hormones by both the gut and the CNS. These molecules play critical roles in modulating various physiological and behavioral responses, including appetite regulation, stress response, immune function, and mood regulation. Overall, a comprehensive understanding of the gut-brain axis is essential for elucidating the pathophysiology of various neurological and gastrointestinal disorders and developing effective therapeutic interventions (<xref ref-type="bibr" rid="ref18">Collins and Bercik, 2009</xref>; <xref ref-type="bibr" rid="ref2">Abo Nahas et al., 2022</xref>; <xref ref-type="bibr" rid="ref36">Helmy et al., 2023</xref>).</p>
<p>The synthesis of short-chain fatty acids by the microbiota has been found to negatively impact the integrity of both the intestinal and blood&#x2013;brain barriers (<xref ref-type="bibr" rid="ref66">Logsdon et al., 2018</xref>). Experimental studies utilizing a dysbiosis mouse model have demonstrated that com-promised intestinal barrier function can result in the translocation of bacterial metabolites and immunological mediators from the gastrointestinal tract into the bloodstream. This may subsequently activate microglia and cause neuroinflammation (<xref ref-type="bibr" rid="ref15">Bruce-Keller et al., 2015</xref>). Accumulating animal studies have shown that dysbiosis or alterations in the gut microbiota composition can influence neurodevelopment and behavior. In recent years, there has been growing evidence of microbial dysbiosis in individuals with ASD. Dysbiosis in ASD is associated with immune and gastrointestinal dysfunction. Notably, there is emerging evidence that the microbiota modifications in ASD can lead to improvements in behaviors (<xref ref-type="bibr" rid="ref53">Kang et al., 2017</xref>).</p>
<p>Nonsteroidal anti-inflammatory drugs (NSAIDs) are widely prescribed medications used globally to alleviate pain, inflammation, and fever. These drugs exert their pharmacological effects by inhibiting the enzyme cyclooxygenase (COX), which plays a crucial role in the biosynthesis of various proteinoids from arachidonic acid (AA). Proteinoids include prostaglandin E2, PGF2a, PGD2, prostacyclin (PGI2), and thromboxane (TxA2). COX consists of two isozymes, COX-1 and COX-2, which have distinct physiological activities, gene regulation, and regulatory sequences (<xref ref-type="bibr" rid="ref71">Maseda and Ricciotti, 2020</xref>; <xref ref-type="bibr" rid="ref26">El Azab et al., 2021</xref>).</p>
<p>Infants born preterm and with low birth weight have an increased risk of developing symptomatic patent ductus arteriosus (PDA), a vascular link between the lungs and heart that typically closes shortly after birth. However, in premature newborns, the PDA remains open and can lead to serious and potentially life-threatening consequences (<xref ref-type="bibr" rid="ref30">Evans et al., 2021</xref>). Addressing cyclooxygenase inhibitors, numerous techniques have been pursued for PDA treatment, including prophylactic therapy within the first 24&#x2009;h of birth for at risk neonates (<xref ref-type="bibr" rid="ref32">Fowlie et al., 2010</xref>). The prophylactic administration of indomethacin, a non-selective cyclooxygenase inhibitor, has been shown to provide short-term clinical benefits. However, the efficacy of indomethacin (NSAIDs) in preterm infants with symptomatic PDA has not been thoroughly investigated (<xref ref-type="bibr" rid="ref88">Ohlsson et al., 2020</xref>). The liver is viewed as a primary target for gut microbes because of the anatomical and functional linkages between the gut and liver, this distinctive anatomical and physio-logical relationships such as communication through the biliary tract, systemic circulation, and portal vein, strongly imply a close connection between the intestinal micro-biome and the liver (<xref ref-type="bibr" rid="ref28">Elshaer et al., 2019</xref>). Recent investigations have illuminated the crucial role of the microbiota in the development of autoimmune liver conditions, which encompass autoimmune hepatitis (AIH), primary biliary cholangitis, and primary sclerosing cholangitis (<xref ref-type="bibr" rid="ref14">Bogdanos et al., 2014</xref>). A correlation has been established between the microbiome and autoimmune disorders, specifically systemic lupus erythematosus (<xref ref-type="bibr" rid="ref54">Katz-Agranov and Zandman-Goddard, 2017</xref>), inflammatory bowel disease (<xref ref-type="bibr" rid="ref33">Franzosa et al., 2019</xref>), and rheumatoid arthritis (<xref ref-type="bibr" rid="ref60">LaRusso et al., 2017</xref>; <xref ref-type="bibr" rid="ref11">Bergot et al., 2019</xref>). The importance of microbial metabolites in modulating the impact of the microbiota on host immune responses and facilitating host-microbiota interactions is gaining more recognition. These metabolites are now understood to be pivotal factors in these processes. The repertoire of gut microbial metabolites encompasses an extensive assortment of molecules, which includes, but is not limited to, short-chain fatty acids, vitamins, secondary bile acids, and neurotransmitters (<xref ref-type="bibr" rid="ref58">Kummen and Hov, 2019</xref>). The microbiome plays a pivotal role in the modulation of inflammatory and immune responses through its capacity to serve as a catalyst for triggering factors (<xref ref-type="bibr" rid="ref58">Kummen and Hov, 2019</xref>).</p>
<p>The Janus kinase/signal transducers and activators of transcription (JAK/STAT) pathway functions as an intermediary mechanism that holds significant importance in the control of inflammatory progressions. It accomplishes this by facilitating the transmission of signals among surface receptors and cytokines, including interferons (IFNs) and interleukins (ILs) (<xref ref-type="bibr" rid="ref97">Schindler et al., 2007</xref>). Upon ligand binding, the cognate receptors become activated, leading to the activation of JAKs. JAKs then undergo mutual phosphorylation and phosphorylate the associated receptors. This interaction triggers the activation of STAT proteins, which can function as transcription factors or activate downstream signaling pathways. JAK1, a tyrosine kinase with broad distribution, assumes a pivotal function in the transmission of signals mediated by cytokines, including IFN&#x03B1;/&#x03B2;, IFN&#x03B3;, IL-2, IL-6, and IL-10 (<xref ref-type="bibr" rid="ref87">O&#x2019;Shea et al., 2015</xref>). Heterozygous mutations in the JAK1 gene have been shown to cause JAK&#x2013;STAT hyperactivity, leading to an autosomal dominant disorder characterized by multiorgan immune dysregulation. The JAK&#x2013;STAT signaling pathway is widely acknowledged as a pivotal regulator of diverse cellular processes, including immune responses, cell growth, differentiation, and survival. The occurrence of disturbances in this particular pathway has been linked to the emergence and progression of various diseases, encompassing immune-mediated conditions and malignancies. An increasing body of empirical evidence suggests an increasing amount of evidence pointing towards the involvement of neu-ro-inflammation in both autism and 22q11.2 deletion syndrome. Patients presenting with concurrent manifestations of both conditions exhibit heightened levels of pro-inflammatory cytokines, with a notable emphasis on interleukin-6 (IL-6) which seems to exert a significant influence (<xref ref-type="bibr" rid="ref48">Jerez et al., 2012</xref>). Thus, the identification of aberrant JAK&#x2013;STAT signaling and elevated proinflammatory cytokine levels in individuals with neurodevelopmental disorders highlights the potential role of immune dysregulation and neuroinflammation in these conditions. Understanding the molecular mechanisms underlying these processes may facilitate the development of novel therapeutic strategies for the treatment of these disorders (<xref ref-type="bibr" rid="ref48">Jerez et al., 2012</xref>).</p>
<p>In a study conducted by <xref ref-type="bibr" rid="ref102">Takeichi et al. (2022)</xref>, the H596D mutation in JAK1 was identified as a critical factor contributing to chronic systemic inflammation. The aforementioned conclusion was derived from clinical findings and corroborated by empirical evidence obtained from a genetically engineered mouse model. The patient with this mutation displayed an inflammatory skin phenotype consistent with autoinflammatory keratinization disease, accompanied by extracutaneous manifestations such as hepatitis and autism. Similarly, the mice with the Jak1 mutation exhibited signs of inflammation affecting both the skin and the liver. Notably, significantly increased levels of mRNA for IL-6 and other molecules associated with the IL-6 inflammatory pathway were observed in liver biopsy specimens obtained from these mice. Moreover, the results of <italic>in vitro</italic> experiments conducted on mouse cerebellar granule cells demonstrated that heightened expression of IL-6 disrupted the process of cellular adhesion and migration. This disruption subsequently resulted in an imbalance between excitatory and inhibitory circuits. Adding to the significance of JAK1, researchers have observed an upregulation of JAK&#x2013;STAT signaling in children with autism, further emphasizing its importance (<xref ref-type="bibr" rid="ref87">O&#x2019;Shea et al., 2015</xref>; <xref ref-type="bibr" rid="ref4">Ahmad et al., 2017</xref>). Growing proof indicates that immune dysfunction may have a significant influence on the development of neurons and the subsequent outcomes of autism (<xref ref-type="bibr" rid="ref65">Lintas and Persico, 2009</xref>). Numerous studies have provided evidence highlighting the significance of pro-inflammatory cytokines, namely IL1, IL-6, IL-18, and TNF&#x03B1;, in the development of atypical behavior in children diagnosed with autism spectrum disorder. Additionally, the involvement of antinuclear antibodies (ANA), anti-smooth muscle antibodies (ASMA), and antimitochondrial antibodies as peripheral inflammatory mediators has been identified as triggers in autoimmune liver diseases (<xref ref-type="bibr" rid="ref34">Ghonaim et al., 2005</xref>). The NLRP3 inflammasome, which serves as a platform for caspase-1 activation, is significantly involved in the regulation of hepatic inflammation and fibrosis (<xref ref-type="bibr" rid="ref107">Wree et al., 2018</xref>).</p>
<p>Based on the aforementioned facts, the present study aimed to unravel the possible association between inflammatory markers, autoimmune liver disease, and autism, with a particular focus on exploring the possible role of dysbiosis in mediating this axis.</p>
</sec>
<sec sec-type="materials|methods" id="sec2">
<label>2.</label>
<title>Materials and methods</title>
<sec id="sec3">
<label>2.1.</label>
<title>Drugs and reagents</title>
<p>Indomethacin (Sigma-Chemical Co., Cairo, Egypt) was supplied as a white yellow odorless powder. The drug was suspended in a small amount of tween 80 and distilled water for oral use. Diet, Rat chow: (20% proteins, 10% fat, 70% carbohydrates) in the form of Pellets was obtained from Meladco (Animal Food, Egypt).</p>
</sec>
<sec id="sec4">
<label>2.2.</label>
<title>Animals and grouping</title>
<p>Forty male Wistar rats, weighing between (130&#x2013;200) for juvenile and (250-400&#x2009;g) for adult rats, were obtained from the Holding company for biological products &#x0026; Vaccines VACCERA in Helwan, Egypt. This study was conducted at the department of pharmacology and Medical Research Center, Faculty of Medicine, Ain Shams University, Egypt. The rats were given a minimum of one week to acclimate to the laboratory conditions. They were housed in cages with a 12-h light/dark cycle, with lights on at 6&#x2009;AM, and the temperature was maintained at 25&#x00B0;C. The rats were housed in groups of three animals per cage for a duration of four weeks. To ensure equal distribution, the rats were divided into two main groups based on their age;</p>
<list list-type="roman-lower">
<list-item><p>Juvenile rats (seven weeks old) which were subdivided into:</p>
<list list-type="order">
<list-item><p>Control group: received only distilled water with tween 80.</p></list-item>
<list-item><p>Indomethacin-treated group: Received Indomethacin (3&#x2009;mg/kg/day) dissolved in tween 80 given for 4&#x2009;weeks by oral gavage.</p></list-item>
</list></list-item>
<list-item><p>Adult rats (nine months old) which were subdivided into:</p>
<list list-type="order">
<list-item><p>Control group: received only distilled water with tween 80.</p></list-item>
<list-item><p>Indomethacin-treated group: Received Indomethacin (3&#x2009;mg/kg/day) dissolved in tween 80 given for 4&#x2009;weeks by oral gavage.</p></list-item>
</list></list-item>
</list>
<p>All animals underwent intraperitoneal anesthesia using thiopental sodium at a dose of 100&#x2009;mg/kg. Thiopental sodium is a barbiturate drug commonly used for induction and maintenance of anesthesia in laboratory animals. The choice of thiopental sodium as the anesthetic agent is likely due to its rapid onset of action and relatively short duration of effect. It allows for smooth and controlled anesthesia induction (<xref ref-type="bibr" rid="ref81">Mohamed et al., 2020</xref>).</p>
</sec>
<sec id="sec5">
<label>2.3.</label>
<title>Induction of intestinal dysbiosis</title>
<p>Rats were allowed to feed normally every 5&#x2009;days during the study. Intestinal dysbiosis was induced as previously reported by oral administration of indomethacin dissolved in tween 80 (3&#x2009;mg/kg/day) given for 4&#x2009;weeks by oral gavage for adult and juvenile rats (<xref ref-type="bibr" rid="ref91">Pearce et al., 2018</xref>).</p>
</sec>
<sec id="sec6">
<label>2.4.</label>
<title>Blood culture</title>
<p>For blood culture analysis, two blood samples of 1&#x2009;mL each were collected from each rat. The first sample was obtained from the ophthalmic venous plexus using the retro-orbital approach prior to the commencement of the experiment. The second sample was collected from the heart using a sterile disposable needle and syringe. Collection of blood was performed under complete aseptic conditions. Sterile gloves were worn. Collected blood was inoculated into neonatal 8&#x2009;mL HiSafe Blood Culture System (Himedia, India). To initiate the blood culture process, the top of the screw cap was removed, and the blood sample was promptly transferred into culture bottles by puncturing the rubber stopper with a needle and injecting the blood. Gentle inversion of the bottle (2&#x2013;3 times) ensured proper mixing of the contents. For aerobic conditions, one of the culture bottles was ventilated using a sterile venting needle equipped with a membrane filter. In con-trast, no ventilation was performed for the bottles intended for anaerobic cultures. The upright position of the bottles was maintained during their incubation at 37&#x00B0;C for 24&#x2009;h, followed by an additional seven days. Additionally, 2&#x2009;mL of the gathered blood samples were introduced into lavender-top EDTA-treated CBC tubes and subsequently preserved at &#x2212;80&#x00B0;C for future biochemical analyzes (<xref ref-type="bibr" rid="ref57">Kumar et al., 2017</xref>).</p>
</sec>
<sec id="sec7">
<label>2.5.</label>
<title>Isolation of pathogens</title>
<sec id="sec8">
<label>2.5.1.</label>
<title>Microbial growth</title>
<p>Microbial growth was usually evident within 48&#x2009;h, denoted by the turbidity of fluid in the bottles or growth on the solid phase. Further incubation for 7&#x2009;days was required to confirm negative results. Identification of the microorganisms present in the culture required sub-culturing on appropriate media. The isolated pathogens were identified using the following culture media (<xref ref-type="bibr" rid="ref7">Banhart et al., 2014</xref>; <xref ref-type="bibr" rid="ref56">Koch-Edelmann et al., 2017</xref>; <xref ref-type="bibr" rid="ref9">Bazin, 2018</xref>; <xref ref-type="bibr" rid="ref1">Abdel-Wahab et al., 2022</xref>):</p>
<list list-type="roman-lower">
<list-item><p>Blood agar medium: this medium was used to support the growth of fastidious pathogens and to identify microbial hemolytic activity.</p></list-item>
<list-item><p>MacConkey&#x2019;s agar medium: this medium was used to support selective growth and differentiation of enteric gram-negative bacilli.&#x201D;</p></list-item>
<list-item><p>Bile esculin agar medium: this medium was used for selective growth of <italic>Enterococcus</italic> Spp.</p></list-item>
<list-item><p>Analytical profile index: this was used for isolation of gram-negative bacilli.</p></list-item>
</list>
</sec>
<sec id="sec9">
<label>2.5.2.</label>
<title>Gram staining and identification of isolated pathogens</title>
<p>Gram stain was used to identify microbial Gram reaction, morphology and arrangement (<xref ref-type="bibr" rid="ref1">Abdel-Wahab et al., 2022</xref>). To identify the microorganisms, the following biochemical tests were used for microbial identification:</p>
<list list-type="roman-lower">
<list-item><p>Catalase production test: this test was used to differentiate <italic>Staphylococci</italic> from <italic>Streptococci &#x0026; Enterococci</italic>.</p></list-item>
<list-item><p>Coagulase production test: this test was used to differentiate <italic>S. aureus</italic> from CONS.</p></list-item>
<list-item><p>Oxidase production test: this test was used to differentiate <italic>Enterobacteriacae</italic> from the rest of gram negative bacilli.</p></list-item>
</list>
</sec>
</sec>
<sec id="sec10">
<label>2.6.</label>
<title>Samples processing</title>
<sec id="sec11">
<label>2.6.1.</label>
<title>Preparation of blood samples</title>
<p>At the conclusion of the experiment, samples were collected from the liver and then centrifuged at 3000&#x2009;rpm (1,500&#x2009;g) for 15&#x2009;min to separate the serum. The obtained serum was immediately stored at &#x2212;80&#x00B0;C until required for the biochemical assays. Serum liver transaminase levels, including aspartate aminotransferase (AST, product number: MAK055) and alanine aminotransferase (ALT, product number: MAK125), were measured using an automated spectrophotometric method with the Synchron cx5 autoanalyzer (Beckman, United States).</p>
</sec>
<sec id="sec12">
<label>2.6.2.</label>
<title>Preparation of tissue samples</title>
<p>After a four-week period, rats were sacrificed, and their livers were rapidly removed. ELISA kits from MyBioSource Company (San Diego, California, USA) were utilized for analysis. The right lobe of each liver was excised for histological examination, while the other lobe was frozen at &#x2212;80&#x00B0;C until homogenate for biomarker assessment.</p>
</sec>
</sec>
<sec id="sec13">
<label>2.7.</label>
<title>Biochemical studies</title>
<sec id="sec14">
<label>2.7.1.</label>
<title>Assessments of liver toll like Receptor-4 (TLR4)</title>
<p>Assessment of Liver Toll-Like Receptor 4 (TLR4) in rats was conducted using a Rat ELISA kit (Cat.No:CSB-E15822r) for the quantitative determination of TLR4 concentrations in tissue homogenates. To prepare the tissue homogenates, 100&#x2009;mg of tissue was rinsed with 1XPBS, homogenized in 1&#x2009;mL of 1X PBS, and stored overnight at &#x2212;20&#x00B0;C. After two freeze&#x2013;thaw cycles were performed to break the cell membranes, the homogenates were centrifuged for 5&#x2009;min at 5000 &#x00D7; g, 2&#x2013;8&#x00B0;C. The supernate was removed and immediately assayed. Alternatively, the samples were stored at &#x2212;80&#x00B0;C. and centrifuged again before the assay.</p>
</sec>
<sec id="sec15">
<label>2.7.2.</label>
<title>Assessment of anti-nuclear antibody (ANA) in the liver</title>
<p>This assessment was conducted using a rat ELISA kit (Cat. No: MBS269217) for <italic>in vitro</italic> quantitative detection of ANA concentrations in tissue homogenates according to <xref ref-type="bibr" rid="ref100">Solomon et al. (2002)</xref>, in both natural and recombinant ANA. The tissue slices were washed with 0.01&#x2009;M PBS and subsequently Add tissue protein extraction reagent according to proportion of 1G: 510&#x2009;mL and mix them in ice water. After being blended, mixture shall be centrifuged for 10&#x2009;min at 500010000&#x2009;rpm. Take supernatant tested immediately or put them at &#x2212;20&#x00B0;C (for 1&#x2013;3&#x2009;months) or&#x2009;&#x2212;&#x2009;80&#x00B0;C (for 1&#x2013;3&#x2009;months) for storage.</p>
</sec>
<sec id="sec16">
<label>2.7.3.</label>
<title>Assessment of liver caspase 1</title>
<p>The Rat ELISA kit (Cat. No E-EL-R0371) was employed to quantitatively detect caspase1 in tissue homogenates. To ensure accurate results, it is important to be cautious about hemolysis as it may impact the outcome. Therefore, the tissues should be thoroughly rinsed with ice-cold PBS (0.01&#x2009;M, pH&#x2009;=&#x2009;7.4) to remove any excess blood.</p>
<p>The Rat ELISA kit is designed for the quantitative detection of caspase1 in serum, plasma, tissue homogenates, and other biological fluids. For tissue homogenates, it is essential to note that hemolyzed blood may affect the accuracy of the results. Therefore, to eliminate excess blood thoroughly, it is recommended to rinse the tissues with ice-cold PBS (0.01&#x2009;M, pH&#x2009;=&#x2009;7.4). The tissue pieces should be weighed and minced into smaller fragments, which will then be homogenized in PBS (the volume depends on the tissue weight, and 9&#x2009;mL PBS is suitable for 1 gram of tissue pieces). Adding a protease inhibitor to the PBS is recommended. To further disrupt the cells, you can utilize either an ultrasonic cell disrupter or subject the suspension to freeze&#x2013;thaw cycles. After homogenization, the samples are then centrifuged for 5&#x2009;min at 5000&#x2009;&#x00D7;&#x2009;g to obtain the supernatant.</p>
</sec>
<sec id="sec17">
<label>2.7.4.</label>
<title>Assessment of liver anti-smooth muscle antibody (ASMA)</title>
<p>A Rat ELISA kit with the catalog number (DEIA-BJ2024) was used for the analysis of tissue homogenates. The tissue was prepared by rinsing the tissue in ice-cold PBS (0.02&#x2009;mol/L, pH 7.0&#x2013;7.2) to remove excess blood thoroughly and weighed before homogenization. The tissues were minced into small pieces and homogenized in a certain amount of PBS with a glass homogenizer on ice. The resulting suspension was subjected to ultrasonication or to two freeze&#x2013;thaw cycles to further break the cell membranes. After that, the homogenates were centrifugated for 15&#x2009;min at 1500&#x2009;&#x00D7;&#x2009;g (or 5,000&#x2009;rpm). The supernate was removed and assayed immediately or aliquot and stored samples at &#x2212;80&#x00B0;C.</p>
</sec>
<sec id="sec18">
<label>2.7.5.</label>
<title>Assessment of liver IL-18</title>
<p>The Rat ELISA kit (Cat. No.: E-EL-R0567) was used for assessing tissue lysate. To begin, 80&#x2009;mg of tissue was washed with 1X PBS and homogenized in 1&#x2009;mL of 1X PBS. Afterward, the homogenates were stored overnight at &#x2212;20&#x00B0;C. To disrupt cell membranes, two freeze&#x2013;thaw cycles were performed, followed by centrifugation for 5&#x2009;min at 5000 x g and a temperature of 2&#x2013;8&#x00B0;C. The resulting supernatant was collected and immediately used for the assay.</p>
</sec>
<sec id="sec19">
<label>2.7.6.</label>
<title>Assessment of liver nod-like receptor (NLRP3)</title>
<p>Total RNA extraction was conducted using the RNeasy Mini Kit. The extracted RNA was then subjected to reverse transcription using the QuantiTect Reverse Transcription Kit. Real-time PCR analysis was performed using the QuantiTect SYBR Green PCR Kit. All kits utilized in the experiment were procured from Qiagen, located in Hilden, Germany. As a housekeeping gene, &#x03B2;-actin was employed for normalization purposes (Primers; Forward: 5&#x2032;-AGGGAAATCGTGCGTGAC-3&#x2032;, Reverse: 5&#x2032;CGCTCATTGCCGATAGTG-3&#x2032;, GenBank NM_031144.3). For NLRP3, the primers were (Forward: 5&#x2032;&#x2009;&#x2212;&#x2009;CCAGGGCTCTGTTCATTG-3&#x2032;, Reverse: 5&#x2032;&#x2009;&#x2212;&#x2009;CCTTG GCTTTCACTTCG-3&#x2032;, GenBank NM_001191642.1). In real-time PCR, a reaction mixture volume of 20&#x2009;&#x03BC;L was prepared, consisting of 500&#x2009;ng cDNA and 0.5&#x2009;&#x03BC;M of each primer. The PCR cycling protocol consisted of an initial denaturation step at 95&#x00B0;C for 15&#x2009;min, followed by 40&#x2009;cycles. Each cycle involved denaturation at 94&#x00B0;C for 15&#x2009;s, annealing at 55&#x00B0;C for 30&#x2009;s, and extension at 70&#x00B0;C for 30&#x2009;s. The relative expression of the target genes was determined using the 2^(&#x2013;&#x0394;&#x0394;CT) equation, and the results were presented as fold expression compared to a reference gene, &#x03B2;-actin. All kits and reagents used in the experiment were obtained from Qiagen, located in Hilden, Germany.</p>
</sec>
</sec>
<sec id="sec20">
<label>2.8.</label>
<title>Histopathological studies</title>
<p>All animals were anesthetized using thiopental sodium (intraperitoneal). The right lobe of the liver of each rat was taken and cut into small pieces (1&#x2009;cm<sup>2</sup>). The jejunum was removed, opened longitudinally and washed properly with saline to remove food remnants and mucous. One half of the liver specimen and part of the jejunum were fixed immediately in 10% buffered formaldehyde and processed to obtain paraffin blocks for light microscopic study. The other half of the liver specimen and part of the jejunum were cut into very small pieces 1&#x2009;mm<sup>2</sup> and fixed immediately in glutaraldehyde and prepared for transmission electron microscopic examination (TEM).</p>
<sec id="sec21">
<label>2.8.1.</label>
<title>Light microscopic assessments</title>
<p>Hematoxylin &#x0026; Eosin (H&#x0026;E) and Mallory&#x2019;s trichrome stains were utilized for liver and small intestine. Caspase-8 immunohistochemical technique was applied for liver to detect the cleaved caspase-8 sections using an avidin biotin-peroxidase technique (purchased from Cell Signaling Technology, USA). Examination was done for detection of any microscopic changes using an Olympus CKX41 light microscope (Olympus Corporation, Tokyo, Japan). The reaction with a solution of DAB (purchased from DAKO, Denmark) was performed at a dilution of 1:100 for 1&#x2009;hour (<xref ref-type="bibr" rid="ref43">Horobin, 2008</xref>). Then, the counterstain was assessed by applying Mayer&#x2019;s hematoxylin. The negative control sections were obtained by the same steps, except for the use of the primary antibody.</p>
</sec>
<sec id="sec22">
<label>2.8.2.</label>
<title>Transmission electron microscopic examination (TEM)</title>
<p>The liver specimen and part of the jejunum were into small pieces of 1&#x2009;mm<sup>3</sup> and were rapidly fixed in 2.5% glutaraldehyde. Specimens were processed and embedded in Eponresin. Semi thin sections (50&#x2009;nm) were stained with toluidine blue. Ultrathin sections were cut and mounted on copper grids (<xref ref-type="bibr" rid="ref91">Pearce et al., 2018</xref>). Specimens were examined and photographed using a JEM 1200 EXII, JEOL, (Tokyo, Japan transmission electron microscope) at the EM unit, Faculty of Science, Ain Shams University.</p>
</sec>
<sec id="sec23">
<label>2.8.3.</label>
<title>Morphometric study</title>
<p>Measurements were accomplished using an image analyzer Leica Q win V.3 program installed on a computer in the Histology and Cell Biology Department, Faculty of Medicine, Ain Shams University. The computer was connected to a Leica DM2500 microscope (Wetzlar, Germany). Six specimens from six different rats of each group were examined. For each specimen, six different captured non-overlapping high-power fields (&#x00D7;40) were taken, six different readings from every captured photo were counted and the mean was calculated for each specimen.</p>
<list list-type="roman-lower">
<list-item><p>Mucosal thickness, and the width of intestinal villi, measured in H&#x0026;E stained intestinal sections (&#x00D7;20 power lens).</p></list-item>
<list-item><p>Area % of collagen fibers in Mallory&#x2019;s trichrome stained sections of liver and intestine (&#x00D7;20 power lens).</p></list-item>
<list-item><p>Number of hepatocytes with positive expression of Caspase-8 in immunohistochemically stained sections (&#x00D7;40 power lens).</p></list-item>
</list>
</sec>
</sec>
<sec id="sec24">
<label>2.9.</label>
<title>Clinical study</title>
<sec id="sec25">
<label>2.9.1.</label>
<title>Patients and methods</title>
<p>A prospective study was conducted at Ain Shams University Children&#x2019;s Hospital from January 2022 to May 2022. The study obtained ethical approval from the local Ethics Committee of Ain Shams University, and written informed consent was secured from the parents of all participants. The study included one hundred and twenty male children. Control group (<italic>n</italic>&#x2009;=&#x2009;60) male children aged 4 to 6&#x2009;year who have ASD without AIH and history of NSAIDs intake and diseased group (<italic>n</italic>&#x2009;=&#x2009;60). who met the inclusion criteria, which were being between the ages of 4 and 6&#x2009;years, male gender, and having a history of receiving non-steroidal anti-inflammatory drugs (NSAIDs) during their early life, or a diagnosis of (ASD) or (AIH). Children who were older than 10&#x2009;years of age or of the female gender were excluded from the study. While adhering to these criteria and securing informed consent, the study aimed to guarantee the ethical well-being of participants and acquire dependable results.</p>
</sec>
<sec id="sec26">
<label>2.9.2.</label>
<title>Biochemical analysis</title>
<sec id="sec27">
<label>2.9.2.1.</label>
<title>Assessment of ANA IgG</title>
<p>Enzyme immunoassay for the qualitative detection of IgG anti-nuclear antibodies (ANA) in human serum/plasma was employed to test the detection of autoantibodies against intracellular antigens known as antinuclear antibodies (ANA) (CatNo.PT-ANA-SCIgG-96) from (PISHTAZ TEB DIAGNOSTICS). ANA testing is often carried out, following <xref ref-type="bibr" rid="ref47">Jaskowski et al. (1996)</xref>. When there is a strong suspicion that an underlying autoimmune disorder develops, as part of the initial diagnostic process. These antibodies are also found in patients with organ-specific autoimmune diseases (autoimmune liver diseases, Hashimoto&#x2019;s thyroiditis), In this approach, microwells are coated with certain quantities of nuclear antigens. Then, the antinuclear antibodies in sample are allowed to interact with the solid phase antigens. After incubation and washing, the enzyme conjugate will be added. Following the second wash process, a chromogen-substrate solution is added and incubated for 15&#x2009;min, which causes the formation of a blue color. The color development is terminated by adding a stop solution, and the color is altered to yellow and detected spectrophotometrically at 450&#x2009;nm.</p>
</sec>
<sec id="sec28">
<label>2.9.2.2.</label>
<title>Assessment of anti-smooth muscle antibodies (ASMA)</title>
<p>ASMA evaluation was conducted using a solid phase enzyme immunoassay with an INOVA Diagnostics (San Diego, CA) ELISA kit. The assay involved incubating calibrators, positive and negative controls, and diluted serum samples on antigen-coated 96-well plates for 30&#x2009;min. During this incubation, the test sample&#x2019;s antibodies bound to the coated wells. After the 30-min incubation, the wells were washed, and horseradish peroxidase-conjugated anti-human IgG was added. Following another 30-min incubation with the substrate, the reaction was stopped. Optical density was determined using a spectrophotometer, and a cutoff of &#x003C;20&#x2009;U/IU was applied. In cases of a positive result, a confirmatory test using the F-actin IgG enzyme-linked immunoassay kit from INOVA Diagnostics (San Diego, CA) was performed. In this study, a positive autoantibody screen was defined as any test with a titer of 1/20 for ASMA and 1/40 for ANA, based on the diagnostic criteria for autoimmune hepatitis from the International Autoimmune Hepatitis Group and the American Association for the Study of Liver Diseases clinical practice guidelines (<xref ref-type="bibr" rid="ref21">Czaja and Freese, 2002</xref>).</p>
</sec>
<sec id="sec29">
<label>2.9.2.3.</label>
<title>Assessment of AST, and ALT</title>
<p>Liver function was assessed by evaluating the activity of transaminases enzymes AST (product number: E.C.2.6.1.2), and ALT (product number: E.C.2.6.1.2) in serum, using endpoint colorimetric assay kits provided by Sigma-Aldrich Darmstadt, Germany, according to <xref ref-type="bibr" rid="ref107">Wree et al. (2018)</xref>. These enzymes are frequently tested clinically as part of a diagnostic liver function test to detect the health of the liver. Serum samples directly diluted in the assay buffer and test samples were prepared up to 20&#x2009;&#x03BC;L/well. The tested samples numerous dosages of sample at (&#x03BB; max&#x2009;=&#x2009;570&#x2009;nm) to ensure the readings are within the standard curve range.</p>
</sec>
<sec id="sec30">
<label>2.9.2.4.</label>
<title>Assessment of IL 6, and IL 18</title>
<p>Serum IL6 and IL8 levels were measured using a human IL6, IL8 ELISA Max<sup>&#x2122;</sup> Set Deluxe (BioLegend, Inc., San Diego, CA, United States) following the manufacturer&#x2019;s guidelines. To begin, 96-well plates were coated with the antibody one day prior to the experiment. After an 18-h incubation at 4&#x00B0;C, the plates were washed with PBS containing 0.05% Tween-20 (Sigma-Aldrich, St. Louis, MO, United States) and then incubated at room temperature with a diluent buffer to prevent nonspecific binding. Following rinsing, 100&#x2009;mL of the sample was added to each well and incubated for 2&#x2009;h at room temperature. After washing the plates again, 100&#x2009;mL of biotinylated detection antibody was added to each well and incubated for 1&#x2009;h. Subsequently, 100&#x2009;mL of avidin-horseradish peroxidase (HRP) was added to each well and incubated for 30&#x2009;min at room temperature. After another round of washing, 3,3&#x2032;,5,5&#x2032;-tetramethylbenzidine (TMB) substrate solution was added, and the plates were incubated in the dark for 15&#x2009;min. The reaction was stopped by adding 100&#x2009;mL of 2&#x2009;N sulfuric acid, and the absorbance at 450&#x2009;nm and 570&#x2009;nm was recorded (<xref ref-type="bibr" rid="ref55">Kawasumi et al., 2014</xref>).</p>
</sec>
<sec id="sec31">
<label>2.9.2.5.</label>
<title>Assessment of NLRP3 RNA extraction and quantitative real-time PCR</title>
<p>For reverse transcription of RNA, the high-capacity cDNA reverse transcription kit (iScript TM) was utilized. The one-step RT-PCR Kit with SYBR<sup>&#x00AE;</sup> Green from BioRad, located in Hercules, CA, United States, was employed for this purpose. The primers used for amplifying the target gene were as follows: NLRP3 forward 5&#x2032;-GCA GCA AAC TGG AAA GGA AG-3&#x2032; and reverse 5&#x2032;-CTT CTC TGA TGA GGC CCA AG-3&#x2032;; ASC forward 5&#x2032;-GCACTT TAT AGA CCA GCA CCG-3&#x2032; and reverse 5&#x2032;-GGC TGG TGT GAA ACTGAA GA-3&#x2032;. Quantitative real-time PCR was performed using the LightCycler CFX96 system (BioRad, Hercules, CA, United States) following the manufacturer&#x2019;s instructions. To achieve optimal results, primer concentration was titrated within the range of 100 to 500&#x2009;nM, and a final concentration of 300&#x2009;nM per primer was found to be effective for most reactions. Equal concentrations of each primer were used to optimize the reaction efficiency. The amplicon size was limited to a range of 50 to 200&#x2009;bp. Relative mRNA expression levels were determined using the comparative 2^(&#x2212;&#x0394;&#x0394;CT) method (<xref ref-type="bibr" rid="ref62">Lebuhn et al., 2016</xref>).</p>
</sec>
<sec id="sec32">
<label>2.9.2.6.</label>
<title>Assessment of JAK-1 utilizing ASO specific-PCR genetic marker</title>
<p>To detect the JAK1 mutation, the following primers were used: (JAK1 Reverse: 5&#x2032;CTGAAT AGTCCTACAGTGTTTTCAGTTTCA 3&#x2032;, JAK1 Forward (specific): 5&#x2032; AGCATTTGGTTTTAAATTATG GAGTATATT 3&#x2032; and JAK1 Forward (internal control): 5&#x2032; ATCTATAGTCATGCTGAAAGTAGGAGAAAG 3&#x2032;). The PCR amplification consisted of 35&#x2009;cycles with an annealing temperature of 58.5&#x00B0;C. Subsequently, agarose gel electrophoresis (2%) was performed to visualize and detect the resulting DNA bands (<xref ref-type="bibr" rid="ref8">Baxter et al., 2005</xref>).</p>
</sec>
</sec>
</sec>
<sec id="sec33">
<label>2.10.</label>
<title>Statistical analysis</title>
<p>In this study, all data were expressed as means&#x00B1;SD, providing a measure of the variability within the dataset. To analyze the data, we utilized GraphPad Prism software program, version 5.0 (2007) from GraphPad Software, Inc., based in CA, USA. The statistical comparison among different groups was carried out using the Unpaired <italic>T</italic>-test, a widely used method to assess differences between two independent groups. For further comparison between these groups, we applied a <italic>post hoc</italic> &#x201C;Transform Normalized Test. Statistical significance was set at <italic>p</italic> &#x003C;&#x2009;0.05, indicating that any differences observed with this level of probability were considered statistically significant. Additionally, we performed an AUROC analysis using the SPSS software package, version 20, from SPSS Inc., headquartered in Chicago, IL, USA. This analysis allowed us to assess the diagnostic accuracy of the measurements and evaluate the potential of the variables in distinguishing between different groups. The determination of the sample size was accomplished using GraphPad Stat Mate software program, Version 1.01, from January 16, 1998. This step ensured that our study had an appropriate sample size to provide statistically meaningful results and reliable conclusions.</p>
</sec>
<sec id="sec34">
<label>2.11.</label>
<title>Ethical considerations</title>
<p>Ethical conduct in experimenting on laboratory animals was carefully considered throughout the study. To ensure ethical conduct, the plausibility of the study questions was ascertained through a literature review. Choosing the animal model was based on an accepted level of consensus across the thoroughly searched literature. Sample size was kept at the minimum required to provide the power sufficient for statistical comparisons. Housing conditions (e.g., illumination, temperature, noise, cleanliness, standard diet and number of animals/cage) were monitored and adequately maintained. Handling animals, for injections or other treatments, was dispensed with the minimal stress possible. Euthanasia was strictly adhered to such that sacrificing animals was performed under appropriate anesthesia. All animals underwent intraperitoneal anesthesia using thiopental sodium at a dose of 100&#x2009;mg/kg. Thiopental sodium is a barbiturate drug commonly used for induction and maintenance of anesthesia in laboratory animals. The choice of thiopental sodium as the anesthetic agent is likely due to its rapid onset of action and relatively short duration of effect, allowing for smooth and controlled anesthesia induction (<xref ref-type="bibr" rid="ref81">Mohamed et al., 2020</xref>). Samples obtained from the sacrificed animals was carefully analyzed using the most robust analytical techniques available, so as to maximize the benefit out of each sacrificed animal. Regarding the clinical study (human study), written informed consent was obtained from all participants, and the study was conducted in accordance with the Declaration of Helsinki and approved by the Ethics Committee. Additionally, it received approval from the Ethics Committee of the Ain Shams Faculty of Medicine, Egypt (No. FWA 00017585, 08/2023) (<xref ref-type="bibr" rid="ref50">Kalinichenko et al., 2021</xref>; <xref ref-type="bibr" rid="ref78">Mohamed et al., 2021</xref>, <xref ref-type="bibr" rid="ref79">2022a</xref>,<xref ref-type="bibr" rid="ref80">b</xref>).</p>
</sec>
</sec>
<sec sec-type="results" id="sec35">
<label>3.</label>
<title>Results</title>
<sec id="sec36">
<label>3.1.</label>
<title>Assessment of bacterial translocation</title>
<p>We initially assessed the effect of indomethacin administration on the bacterial translocation in the blood culture. As shown in <xref rid="tab1" ref-type="table">Table 1</xref>, the evaluation of blood culture in rats before indomethacin administration (control group) revealed a negative bacterial translocation in both juvenile and adult groups. On the other hand, administration of indomethacin (3&#x2009;mg/kg/day, for 4&#x2009;weeks) in juvenile wistar rats demonstrated a positive bacterial translocation in the blood culture of 80% of the group, as compared to the control group, including 30% <italic>E. coli</italic>, 30% <italic>Enterococcus</italic> Spp., and 20% <italic>Klebsiella</italic> Spp. Similarly, indomethacin administration in adult wistar rats displayed a positive bacterial translocation in the blood culture of 60% of the group (40% <italic>E. coli</italic>, 20% <italic>Enterococcus</italic> Spp.). These results indicate that administration of indomethacin induces intestinal permeability which leads to bacterial translocation (dysbiosis). Notably, the effect of indomethacin uptake in bacterial translocation was more significant in juvenile group more than that in adult group.</p>
<table-wrap position="float" id="tab1">
<label>Table 1</label>
<caption>
<p>Effect of indomethacin administration (3&#x2009;mg/kg/day) for 4&#x2009;weeks on bacterial translocation.</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th rowspan="2"/>
<th align="center" valign="top" colspan="2">Adult</th>
<th align="center" valign="top" colspan="2">Juvenile</th>
</tr>
<tr>
<th align="center" valign="top">Control</th>
<th align="center" valign="top">Indomethacin group</th>
<th align="center" valign="top">Control</th>
<th align="center" valign="top">Indomethacin group</th>
</tr>
</thead>
<tbody>
<tr>
<td align="left" valign="top">Positive blood culture</td>
<td align="center" valign="top">Zero</td>
<td align="center" valign="top">60%</td>
<td align="center" valign="top">Zero</td>
<td align="center" valign="top">80%</td>
</tr>
<tr>
<td align="left" valign="top">Negative blood culture</td>
<td align="center" valign="top">10</td>
<td align="center" valign="top">3 (30%) &#x2013; one died case</td>
<td align="center" valign="top">10</td>
<td align="center" valign="top">1 (10%) &#x2013; one died case</td>
</tr>
<tr>
<td align="left" valign="top"><italic>E. coli</italic> (Gram negative bacilli)</td>
<td align="center" valign="top">Zero</td>
<td align="center" valign="top">40%</td>
<td align="center" valign="top">Zero</td>
<td align="center" valign="top">30%</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Enterococcus</italic> Spp. (Gram positive cocci)</td>
<td align="center" valign="top">Zero</td>
<td align="center" valign="top">20%</td>
<td align="center" valign="top">Zero</td>
<td align="center" valign="top">30%</td>
</tr>
<tr>
<td align="left" valign="top"><italic>Klebsiella</italic> Spp. (Gram negative bacilli)</td>
<td align="center" valign="top">Zero</td>
<td align="center" valign="top">Zero</td>
<td align="center" valign="top">Zero</td>
<td align="center" valign="top">20%</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="sec37">
<label>3.2.</label>
<title>Biochemical analysis</title>
<sec id="sec38">
<label>3.2.1.</label>
<title>Effect of indomethacin administration on the serum ALT and AST levels</title>
<p>Frist, we have explored the effect of indomethacin administration (3&#x2009;mg/kg/day, 4&#x2009;weeks) on liver function by evaluating (alanine transaminase) ALT and AST levels in serum. As shown in <xref rid="fig1" ref-type="fig">Figure 1</xref>, oral administration of indomethacin significantly (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05) elevated the levels of serum ALT in both the juvenile group (51.00&#x2009;U/L to 68.83&#x2009;U/L), and the adult group (58.33&#x2009;U/L to 109.5&#x2009;U/L), as compared to the control groups. Similarly, administration of indomethacin demonstrated the ability to significantly (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05) increase of the AST levels in serum of juvenile (89.83&#x2009;U/L), and adult (153.7&#x2009;U/L) wistar treated rats, as compared to untreated groups (59.5&#x2009;U/L and 69.50&#x2009;U/L, respectively). These results reveal that NSAIDs administration (indomethacin) has deterioration effects on the liver function in both juvenile and adult subjects which range from asymptomatic elevations in serum aminotransferase levels to fulminant liver failure. These effects could be attributed to the direct hepatotoxic effect of NSAIDs or to their ability to disturb the gut microbiota and increase intestinal permeability that commonly associated with systemic release of inflammatory cytokines leading to liver cell injury.</p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption>
<p>Effect of oral administration of indomethacin (3&#x2009;mg/kg, 4&#x2009;weeks) on the serum AST <bold>(A)</bold>, ALT <bold>(B)</bold> levels, hepatic caspase 1 expression (pg/g tissue) <bold>(C)</bold>, and expression of hepatic TLR4 gene <bold>(D)</bold> in the adult and juvenile groups. Data are presented as mean&#x2009;&#x00B1;&#x2009;SD using Unpaired <italic>T</italic>-test, <italic>n</italic> =&#x2009;6. <sup>a</sup> significant difference in comparison to adult control; <sup>a</sup> (<italic>p</italic> &#x003C;&#x2009;0.05), <sup>b</sup> significant difference in comparison to juvenile control; <sup>b</sup> (<italic>p</italic> &#x003C;&#x2009;0.05).</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g001.tif"/>
</fig>
</sec>
<sec id="sec39">
<label>3.2.2.</label>
<title>Effect of indomethacin administration on the expression of hepatic TLR4 gene</title>
<p>To explore the effect of indomethacin administration on disturbing the intestinal barrier and induction of inflammatory reaction in liver tissue, the expression of hepatic TLR4 gene was assessed by ELISA. The results demonstrated that the untreated juvenile and adult groups exhibit normal expression levels of TLR4 gene (14.23&#x2009;pg./g tissue, and 16.70&#x2009;pg./g tissue, respectively) (<xref rid="fig1" ref-type="fig">Figure 1</xref>). On the other hand, administration of indomethacin (3&#x2009;mg/kg/day, for 4&#x2009;weeks) significantly (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05) elevated the expression of hepatic TLR4 gene in both juvenile (28.77&#x2009;pg./g tissue) and adult (30.83&#x2009;pg./g tissue) groups. These findings suggest that indomethacin administration leads to impairment of the mucosal barrier leading to bacterial translocation. Furthermore, the increased expression of hepatic TLR4 gene triggers the inflammatory pathway by interacting with lipopolysaccharide (LPS), derived from gram-negative bacteria in the intestinal lumen, leading to the activation of the NLRP3 and IL-18 pathways.</p>
</sec>
<sec id="sec40">
<label>3.2.3.</label>
<title>Effect of indomethacin administration on the expression of hepatic caspase 1</title>
<p>To examine the effect of indomethacin-induced intestinal dysbiosis on the inflammatory activation pathway, we have assessed the expression of hepatic caspase 1 levels by ELISA in both juvenile and adult treated groups in comparison to control group. As displayed in <xref rid="fig1" ref-type="fig">Figure 1</xref>, daily oral administration of indomethacin (3&#x2009;mg/kg) for 4&#x2009;weeks significantly (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05) increased hepatic caspase 1 levels in indomethacin-treated juvenile (34.4&#x2009;pg./g tissue) and adult (59.08&#x2009;&#x00B1;&#x2009;1.67&#x2009;pg./g tissue) groups, as compared to the control groups (19.82&#x2009;pg./g tissue, and 26.08&#x2009;pg./g tissue, respectively). These findings highlight the possible effect of indomethacin-induced dysbiosis in activating NLRP3 inflammasome pathway, as caspase 1 is downstream component of NLRP3 protein complex. NLPR3 plays a crucial role to convert caspase-1 to its cleaved caspase-1 activated form, which largely triggers a series of inflammatory mediators, including interleukin (IL)-1&#x03B2;, IL-18, resulting in liver injury.</p>
</sec>
<sec id="sec41">
<label>3.2.4.</label>
<title>Effect of indomethacin uptake on the expression of hepatic IL-18</title>
<p>To further explore the effect of indomethacin administration on the activation of NLRP3 inflammasome pathway, we have evaluated the expression of IL-18 by ELISA analysis. Administration of indomethacin (3&#x2009;mg/kg/day, 4&#x2009;weeks) induced a significant (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05) increase in the expression of IL-18 levels in liver tissue of juvenile (29.27&#x2009;pg./g tissue) and adult (50.20&#x2009;pg./g tissue) treated groups, as compared to untreated groups (17.8&#x2009;pg./g tissue, and 20.8&#x2009;pg./g tissue, respectively). These results demonstrated the effect of indomethacin administration on inducing NLRP3 inflammasome pathway after disturbing gut permeability. Notably the effect of indomethacin uptake on hepatic IL-18 expression was more tremendous in the adult treated group (<xref rid="fig2" ref-type="fig">Figure 2</xref>). Inflammasomes are signaling platforms that are activated in response to infectious diseases or chronic sterile inflammation and induce inflammation via triggering IL-1&#x03B2; and IL-18 or inducing pyroptosis via gasdermin-d (GSDMD). Our findings are in agreement with the observed over-expression in hepatic caspase 1 levels for indomethacin-treated groups and affirm the effect of indomethacin administration on activating NLRP3 inflammasome pathway.</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption>
<p>Effect of daily indomethacin administration (3&#x2009;mg/kg) for 4&#x2009;weeks on hepatic IL-18 expression (pg/g tissue) <bold>(A)</bold>, NLRP3 expression <bold>(B)</bold>, anti smooth muscle antibody (ASMA) <bold>(C)</bold>, and antinuclear antibody (ANA) <bold>(D)</bold> in the adult and juvenile groups. Data are presented as mean&#x2009;&#x00B1;&#x2009;SD, using Unpaired <italic>T</italic>-test, <italic>n</italic>&#x2009;=&#x2009;6. <sup>a</sup> significant difference in comparison to adult control; <sup>a</sup> (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05), <sup>b</sup> significant difference in comparison to juvenile control; <sup>b</sup> (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05).</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g002.tif"/>
</fig>
</sec>
<sec id="sec42">
<label>3.2.5.</label>
<title>Effect of indomethacin-induced dysbiosis on hepatic NLRP3 expression</title>
<p>To emphasize the effect of indomethacin-induced dysbiosis on inflammasome pathway, we have examined the expression of hepatic NLRP3 gene by real-time PCR. According to the data presented in <xref rid="fig2" ref-type="fig">Figure 2</xref>, the juvenile and adult groups that did not receive treatment demonstrated a normal level of NLRP3 inflammasome expression (0.99 and 1.07, respectively). Interestingly, administration of indomethacin (3&#x2009;mg/kg/day, 4&#x2009;weeks) demonstrated the ability to significantly (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05) upregulate the expression of hepatic NLRP3 in both juvenile and adult treated groups (7.28 and 11.15, respectively). The NLRP3 inflammasome is the most widely studied and the best-characterized inflammasome in chronic inflammatory diseases. The NLRP3 inflammasome is composed of three main components: the NOD-like receptor NLRP3, the adaptor protein ASC (apoptosis-associated speck-like protein containing a CARD), and the effector molecule pro-caspase-1. These components work together to activate the inflammasome complex and initiate the inflammatory response. The NLRP3 inflammasome can be activated by several stimuli including pathogen-associated molecular patterns (PAMPs) ligands and damage-associated molecular patterns (DAMPs), which could be released in systemic circulation after indomethacin-induced disturbance of the intestinal permeability. NLRP3 inflammasome activation was associated with downstream activation of caspase 1, IL-1B and IL-18 leading to liver cell pyroptosis. Activation of NLRP3 inflammasome by PAMPs and DAMPs indicates that the NLRP3 inflammasome is a common sensor of cellular stress or injury. Overall, our results further highlight the pivotal role of NLRP3 inflammasome pathway in the development of liver disease.</p>
</sec>
<sec id="sec43">
<label>3.2.6.</label>
<title>Effect of indomethacin administration on the expression of hepatic anti-smooth muscle antibody (ASMA) and antinuclear antibody (ANA)</title>
<p>To gain further insights into the molecular effect of indomethacin-induced dysbiosis on autoimmune hepatitis, we aimed to assess the expression of hepatic ASMA and ANA by ELISA analysis. As displayed in <xref rid="fig2" ref-type="fig">Figure 2</xref>, the untreated control groups demonstrated a normal level of hepatic antibody ASMA and ANA in both juvenile (13.95&#x2009;&#x03BC;g/g tissue and 6.2&#x2009;&#x03BC;g/g tissue, respectively) and adult (19.45&#x2009;&#x03BC;g/g tissue and 7.92&#x2009;&#x03BC;g/g tissue, respectively). On the other hand, administration of indomethacin (3&#x2009;mg/kg/day, 4&#x2009;weeks) significantly (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05) elevated the level of ASMA in the liver tissue of juvenile group (27.47&#x2009;&#x03BC;g/g tissue) and adult group (50&#x2009;&#x03BC;g/g tissue). Further, the indomethacin-treated groups displayed significantly (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05) excessive levels of ANA in both juvenile and adult groups (11.02&#x2009;&#x03BC;g/g tissue, and 17.62&#x2009;&#x03BC;g/g tissue, respectively). Numerous studies have provided substantial evidence regarding the association of ANA and ASMA with autoimmune hepatitis. ANA comprises antibodies that exhibit reactivity specifically directed against nuclear membranes and DNA. In contrast, the target antigens of ASMA are believed to be directed towards action, tubulin, or the intermediate filaments present in the cell. These antibody markers serve as important diagnostic tools in identifying and understanding this autoimmune liver disease. Therefore, our findings indicate the possible impact of indomethacin-induced dysbiosis in inducing autoimmune hepatitis.</p>
</sec>
</sec>
<sec id="sec44">
<label>3.3.</label>
<title>Histological analysis</title>
<sec id="sec45">
<label>3.3.1.</label>
<title>Light microscopic analysis (H&#x0026;E stain)</title>
<sec id="sec46">
<label>3.3.1.1.</label>
<title>Assessment of intestinal mucosa tissue</title>
<p>To assess the impact of indomethacin administration on the intestinal tissue architecture and inflammatory response in juvenile and adult groups, we employed Hematoxylin and Eosin (H&#x0026;E) staining. The light microscopic analysis was conducted to examine several histological parameters including the integrity of the intestinal epithelium, underlying connective tissue layers, smooth muscle layer, villus morphology, and extent of inflammatory cell infiltration.</p>
<sec id="sec47">
<label>3.3.1.1.1.</label>
<title>Juvenile group</title>
<p>Examination of H&#x0026;E stained juvenile sections of the juvenile control group showed the layers of the intestinal wall; the mucosa has thin finger-like projections (villi) alternating with deep invaginations (crypts of Lieberk&#x00FC;hn) (<xref rid="fig3" ref-type="fig">Figure 3</xref>). The mucosal thickness and the width of the intestinal villi measured 353.7&#x2009;&#x00B1;&#x2009;15.46 and 58.84&#x2009;&#x00B1;&#x2009;2.76, respectively (<xref rid="fig4" ref-type="fig">Figure 4</xref>). A thin connective tissue layer (submucosa) separates the mucosa from the underlying smooth muscle layer (Musculosa). The villi were seen covered with enterocytes and goblet cells; enterocytes are columnar cells with acidophilic cytoplasm, oval basal vesicular nuclei and intact brush border. Goblet cells are pale rounded cells with foamy cytoplasm. Intraepithelial lymphocytes were also seen. The core of the villi is formed of CT lamina propria with mononuclear cells examination of H&#x0026;E stained juvenile sections of the indomethacin-treated juvenile model group showed the villi distended with apparently increased mononuclear inflammatory cells in their cores. Many enterocytes appeared cubical with rounded deeply stained nuclei. Some villi had interrupted brush border. The core of the villi was markedly vacuolated. Some villi showed extensive mononuclear inflammatory cellular infiltration in their cores. The mucosal thickness and the width of intestinal villi measured 713.0&#x2009;&#x00B1;&#x2009;8.83 and 113.8&#x2009;&#x00B1;&#x2009;4.69, respectively (<xref rid="fig5" ref-type="fig">Figure 5</xref>). These histological observations reveal that the administration of indomethacin resulted in a reduction in the thickness of intestinal layers, accompanied by an enlargement of the intestinal villi. Additionally, these changes were associated with an increased infiltration of inflammatory cells within the mucosal tissue. These results affirm the effect of indomethacin in the impairment of the intestinal wall permeability and induction of dysbiosis.</p>
<fig position="float" id="fig3">
<label>Figure 3</label>
<caption>
<p>Showing intestinal mucosa in juvenile groups. <bold>(A,B)</bold> Control. <bold>(A)</bold> Showing intestinal (juvenile) mucosa formed of thin finger-like villi (V) and crypts of Lieberk&#x00FC;hn (&#x2191;). Musculosa (M) is seen under the mucosa. <bold>(B)</bold> Showing enterocytes (E) columnar with acidophilic cytoplasm, oval basal vesicular nuclei and intact brush border (BB). Notice the goblet cells (G) and intraepithelial lymphocytes (&#x2191;). The core of the villi is formed of CT lamina propria with mononuclear cells. <bold>(C&#x2013;E)</bold> Indomethacin (Model) group. <bold>(C)</bold> Showing distended villi (V) with apparently increased mononuclear inflammatory cells in their cores (&#x002A;). <bold>(D)</bold> Many enterocytes (E) appear cubical with rounded deeply stained nuclei. Some villi have interrupted brush border (BB). The core of the villi is markedly vacuolated (&#x002A;) and shows areas of hemorrhage (&#x25B4;). <bold>(E)</bold> Some villi showed extensive mononuclear inflammatory cellular infiltration in their cores (&#x002A;). <italic>H&#x0026;E: <bold><italic>(A,C)</italic></bold> &#x00D7;&#x2009;100, <bold><italic>(B,D,E)</italic></bold> &#x00D7;&#x2009;400.</italic></p>
</caption>
<graphic xlink:href="fncel-17-1268126-g003.tif"/>
</fig>
<fig position="float" id="fig4">
<label>Figure 4</label>
<caption>
<p>Showing intestinal mucosa in juvenile groups. <bold>(A,B)</bold> Control, showing continuous layer of collagen fibers (&#x25B4;) separating the mucosa of the jejunum from the musculosa and few thin fibers extending into the cores of the villi (&#x2191;). <bold>(C,D)</bold> Indomethacin (Model) group, showing discontinuous and irregular collagen fibers (&#x25B4;). <italic>Mallory&#x2019;s trichrome stain: <bold><italic>(A,C)</italic></bold> &#x00D7;&#x2009;100</italic>, <bold><italic>(B,D)</italic></bold> <italic>&#x00D7;&#x2009;400.</italic></p>
</caption>
<graphic xlink:href="fncel-17-1268126-g004.tif"/>
</fig>
<fig position="float" id="fig5">
<label>Figure 5</label>
<caption>
<p>Effect of daily oral administration of indomethacin (3&#x2009;mg/kg/day) for 4&#x2009;weeks on mucosal thickness and width of small intestine. Data are presented as mean&#x2009;&#x00B1;&#x2009;SD, <italic>n</italic>&#x2009;=&#x2009;6.&#x002A; significant difference in comparison to adult control; &#x002A; (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05), # significant difference in comparison to juvenile control; # (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05), using Unpaired <italic>T</italic>-test.</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g005.tif"/>
</fig>
</sec>
<sec id="sec48">
<label>3.3.1.1.2.</label>
<title>Adult group</title>
<p>Assessment of H&#x0026;E stained jejunal sections of the adult control group showed the normal layers of the intestinal wall (<xref rid="fig6" ref-type="fig">Figure 6</xref>). The mucosal thickness and the width of the villi measured 350.9&#x2009;&#x00B1;&#x2009;6.59 and 67.37&#x2009;&#x00B1;&#x2009;1.42, respectively (<xref rid="fig5" ref-type="fig">Figure 5</xref>). Examination of H&#x0026;E stained jeunal sections of the indomethacin-treated adult model group showed the villi swollen and distorted. Most of enterocytes appeared cubical with rounded deeply stained nuclei Some villi had sloughed tips while others had areas of epithelial proliferation. The cores of the villi were markedly vacuolated. Some villi showed sloughing of their epithelium and extensive mononuclear inflammatory cellular infiltration in their cores. The mucosal thickness and the width of the villi measured 476.3&#x2009;&#x00B1;&#x2009;12.50 and 85.08&#x2009;&#x00B1;&#x2009;2.97, respectively (<xref rid="fig5" ref-type="fig">Figure 5</xref>). Based on the aforementioned histological findings, it can be concluded that the administration of indomethacin induced similar histological effects as observed in the juvenile group. Notably, the effects were more pronounced in the juvenile group compared to adult group.</p>
<fig position="float" id="fig6">
<label>Figure 6</label>
<caption>
<p>Showing intestinal mucosa in adult groups. <bold>(A,B)</bold> Control. <bold>(A)</bold> Intestinal (Jejunal) mucosa with finger-like villi (V) and crypts of Lieberk&#x00FC;hn (&#x2191;). Musculosa (M) is seen under the mucosa. <bold>(B)</bold> Enterocytes (E) are columnar with acidophilic cytoplasm, oval basal nuclei and intact brush border (BB). Notice the goblet cells (G) and intraepithelial lymphocytes (&#x2191;). The core of the villi is formed of CT lamina propria with mononuclear cells. <bold>(C&#x2013;E)</bold> Indomethacin (Model) group. <bold>(C)</bold> Villi (V) are seen swollen and distorted. Some villi have sloughed tips (&#x002A;). <bold>(D)</bold> Most of the enterocytes (E) appear cubical with rounded nuclei. Some villi have sloughed tips (&#x002A;) and others have areas of epithelial proliferation (thick arrow). The core of the villi is markedly vacuolated. <bold>(E)</bold> Some villi showed sloughing of their epithelium (waved arrows) and increased number of mononuclear inflammatory cells in their cores (&#x002A;). <italic>H&#x0026;E: <bold><italic>(A,C)</italic></bold> &#x00D7;&#x2009;100. <bold><italic>(B,D,E)</italic></bold> &#x00D7;&#x2009;400.</italic></p>
</caption>
<graphic xlink:href="fncel-17-1268126-g006.tif"/>
</fig>
</sec>
</sec>
<sec id="sec49">
<label>3.3.1.2.</label>
<title>Assessment of liver tissue</title>
<p>Next, we assessed the effect of indomethacin administration on the liver tissue parenchyma of juvenile and adult groups by conducting H&#x0026;E stain. The light microscope analysis was employed to examine the degree of inflammatory cell infiltration and hepatocyte structure.</p>
<sec id="sec50">
<label>3.3.1.2.1.</label>
<title>Juvenile group</title>
<p>Examination of H&#x0026;E stained liver sections of the juvenile control group showed the normal architecture of the liver parenchyma in the form of polygonal lobules with central veins in their centers and portal areas at the corners. From the central veins, there were radiating cords of polygonal, acidophilic hepatocytes with central vesicular nuclei. They were separated by blood sinusoids. The portal areas contained branches of bile duct, hepatic artery and portal vein (<xref rid="fig7" ref-type="fig">Figure 7</xref>). Examination of H&#x0026;E stained liver sections of the juvenile model group showed diffuse mononuclear inflammatory cells within the hepatic lobules. Mononuclear inflammatory cells were seen near the central veins, portal areas and extending in-between the hepatocytes (interface hepatitis). The inflammatory infiltrate is formed mainly of lymphocytes and plasma cells. Plasma cells appeared oval with basophilic cytoplasm and rounded eccentric deeply stained nucleus. Some groups of hepatocytes were seen arranged around a lumen forming rosettes. Sometimes intact lymphocytes were seen inside hepatocytes (Emperipolesis). Also multinucleated giant cells were sometimes seen (<xref rid="fig7" ref-type="fig">Figure 7</xref>). The histological findings presented above reveal the presence of lymphocytes and plasma cells, which are recognized histological markers of autoimmune hepatitis, within the liver tissue parenchyma of both the juvenile and adult groups treated with indomethacin. These observations provide compelling evidence supporting the role of indomethacin administration in triggering autoimmune hepatitis.</p>
<fig position="float" id="fig7">
<label>Figure 7</label>
<caption>
<p>Showing liver sections in juvenile groups. <bold>(A&#x2013;C)</bold> Control. <bold>(A)</bold> Normal hepatic architecture with Central veins (CV) and a portal area (P). <bold>(B)</bold> Showing a central vein (CV) with radiating cords of hepatocyte (&#x2191;), separated by blood sinusoids (S). <bold>(C)</bold> Showing portal area with a branch of bile duct (B), hepatic artery (A) and portal vein (P). <bold>(D&#x2013;J)</bold> Indomethacin (Model) group. <bold>(D,E)</bold> showing mononuclear inflammatory cells (&#x002A;) in-between hepatocytes and near a central vein (CV). <bold>(F)</bold> some hepatocytes form rosettes (R), mononuclear inflammatory cell infiltrate (&#x002A;) is seen around a congested vessel (V) and extending between hepatocytes. <bold>(G)</bold> The inflammatory infiltrate is formed mainly of lymphocytes (Ly) and plasma cells (Pc). <bold>(H)</bold> A plasma cell (Pc); oval, basophilic with rounded eccentric deeply stained nucleus. <bold>(I)</bold> A lymphocyte (Ly) is seen inside a hepatocyte (Emperipolesis). <bold>(J)</bold> A multinucleated giant cell (&#x25B4;). <italic>H&#x0026;E: <bold><italic>(A,D)</italic></bold> &#x00D7;&#x2009;100; <bold><italic>(B,C,E,F)</italic></bold> &#x00D7;&#x2009;400; <bold><italic>(G,H,I,J)</italic></bold> &#x00D7;&#x2009;1,000.</italic></p>
</caption>
<graphic xlink:href="fncel-17-1268126-g007.tif"/>
</fig>
</sec>
<sec id="sec51">
<label>3.3.1.2.2.</label>
<title>Adult group</title>
<p>Examination of H&#x0026;E stained liver sections of the adult control group showed the normal architecture of the liver parenchyma in the form of polygonal lobules with central veins in their centers and portal areas at the corners (<xref rid="fig8" ref-type="fig">Figure 8</xref>). Assessment of H&#x0026;E stained liver sections of the treated-adult model group showed diffuse mononuclear inflammatory cells within the hepatic lobules. Mononuclear inflammatory cells were seen near the central veins, with different amounts ranging from only few cells to large areas of aggregated mononuclear inflammatory cells, extending between the hepatocytes. Also, the portal areas showed mononuclear inflammatory cell infiltrate (interface hepatitis). The inflammatory infiltrate was formed mainly of lymphocytes and plasma cells. Plasma cells appeared oval with basophilic cytoplasm and rounded eccentric deeply stained nucleus. Sometimes intact lymphocytes were seen inside hepatocytes (Emperipolesis). Some hepatocytes appeared shrunken with pyknotic nuclei and deeply stained acidophilic cytoplasm. Also, necrotic areas with homogenous acidophilic centers and inflammatory cells were seen (focal necrosis) (<xref rid="fig8" ref-type="fig">Figure 8</xref>). Based on the aforementioned histological findings, it can be concluded that the administration of indomethacin resulted in similar histological effects as observed in the juvenile group. Notably, the impact of indomethacin was more pronounced in the juvenile group compared to other groups.</p>
<fig position="float" id="fig8">
<label>Figure 8</label>
<caption>
<p>Showing liver sections in adult groups. <bold>(A&#x2013;C)</bold> Control. <bold>(A)</bold> Showing normal hepatic architecture with central veins (CV) and a portal area (P). <bold>(B)</bold> Showing cords of hepatocytes (&#x2191;) separated by blood sinusoids (S). Some hepatocytes are binucleated (&#x25B4;). <bold>(C)</bold> Showing branch of bile duct (B), hepatic artery (A) and portal vein (P). <bold>(D&#x2013;K)</bold> Indomethacin group. <bold>(D)</bold> Showing diffuse (waved arrow) and aggregated (&#x002A;) mononuclear inflammatory cells. <bold>(E)</bold> showing mononuclear inflammatory cells (waved arrows) near the central vein (CV) and in-between the hepatocytes. <bold>(F)</bold> A portal area (P) with mononuclear inflammatory cell infiltrate (&#x002A;). Some hepatocytes (&#x2191;) are shrunken with pyknotic nuclei and deeply stained acidophilic cytoplasm. <bold>(G)</bold> Mononuclear inflammatory cell infiltrate (&#x002A;) is seen around a central vein (V) and extending between hepatocytes. <bold>(H)</bold> Area of focal necrosis (&#x25B4;) within a hepatic lobule. <bold>(I)</bold> Inflammatory infiltrate formed mainly of lymphocytes (Ly) and plasma cells (Pc). <bold>(J)</bold> Showing a plasma cell (Pc). <bold>(K)</bold> A lymphocyte (Ly) is seen inside a hepatocyte (Emperipolesis). <italic>H&#x0026;E: <bold><italic>(A,D)</italic></bold> &#x00D7;&#x2009;100; <bold><italic>(B,C,E,F,G,H)</italic></bold> &#x00D7;&#x2009;400; <bold><italic>(I,J,K)</italic></bold> &#x00D7;&#x2009;1,000.</italic></p>
</caption>
<graphic xlink:href="fncel-17-1268126-g008.tif"/>
</fig>
</sec>
</sec>
</sec>
<sec id="sec52">
<label>3.3.2.</label>
<title>Light microscopic analysis (Mallory&#x2019;s trichrome stain)</title>
<sec id="sec53">
<label>3.3.2.1.</label>
<title>Assessment of intestinal mucosa tissue</title>
<p>To gain insight into the degree of the inflammatory reaction in intestinal fibrous tissue, we employed Mallory&#x2019;s Trichrome Stain to assess the amount of collagen tissue deposition in intestinal wall layers of juvenile and adult groups.</p>
<sec id="sec54">
<label>3.3.2.1.1.</label>
<title>Juvenile group</title>
<p>Examination of Mallory&#x2019;s trichrome stained jejunal sections of the juvenile control group showed a layer of regularly arranged collagen fibers between the mucosa and the musculosa with few thin fibers extending into the cores of the villi. The area % of collagen fibers in the submucosa and lamina propria measured 6.83&#x2009;&#x00B1;&#x2009;0.933 (<xref rid="fig4" ref-type="fig">Figure 4</xref>). Examination of Mallory&#x2019;s trichrome stained juvenile sections of the juvenile model group showed apparently increased amount of irregularly arranged collagen fibers between the mucosa and the musculosa. The area % of collagen fibers in the submucosa and lamina propria measured 14.32&#x2009;&#x00B1;&#x2009;1.16. The results suggest that the use of indomethacin leads to an increase in the deposition of collagen fibers in the juvenile section when compared to the control group. This increase may be attributed to the inflammatory response triggered by the administration of indomethacin.</p>
</sec>
<sec id="sec55">
<label>3.3.2.1.2.</label>
<title>Adult group</title>
<p>Examination of Mallory&#x2019;s trichrome stained juvenile sections of the adult control group showed a layer of regularly arranged collagen fibers between the mucosa and the musculosa with few thin fibers extending longitudinally into the cores of the villi. The area % of collagen fibers in the submucosa and lamina propria measured 5.27&#x2009;&#x00B1;&#x2009;0.617 (<xref rid="fig9" ref-type="fig">Figure 9</xref>). Examination of Mallory&#x2019;s trichrome stained jejunal sections of the adult model group showed increased amount of discontinuous and irregularly arranged collagen fibers between the mucosa and the musculosa. Most of the villi had distorted collagen fibers in their cores. The area % of collagen fibers in the submucosa and lamina propria measured 19.54&#x2009;&#x00B1;&#x2009;2.11. The findings demonstrate that the administration of indomethacin induced histological changes similar to those observed in the juvenile group. Notably, the effects of indomethacin were more pronounced in the juvenile group.</p>
<fig position="float" id="fig9">
<label>Figure 9</label>
<caption>
<p>Showing intestinal mucosa in adult groups. <bold>(A,B)</bold> Control. <bold>(A)</bold>: showing the mucosa of the jejunum separated from the musculosa by a layer of collagen fibers (&#x25B4;). <bold>(B)</bold>: showing thin, longitudinal collagen fibers inside the villi (waved arrow). <bold>(C,D)</bold>: indomethacin (Model) group. <bold>(C)</bold>: the collagen fibers appear discontinuous and irregular (&#x25B4;). <bold>(D)</bold>: most of the villi are seen with distorted collagen fibers. <italic>Mallory&#x2019;s trichrome stain: <bold><italic>(A,C)</italic></bold> &#x00D7;&#x2009;100; <bold><italic>(B,D)</italic></bold> &#x00D7;&#x2009;400</italic>. <bold>(E)</bold>: effect of daily oral administration of indomethacin (3&#x2009;mg/kg/day) for 4&#x2009;weeks on mucosal thickness of small intestine. Data are presented as mean&#x2009;&#x00B1;&#x2009;SD, using Unpaired <italic>T</italic>-test, <italic>n</italic>&#x2009;=&#x2009;6. <sup>a</sup> significant difference in comparison to adult control; <sup>a</sup> (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05), <sup>b</sup> significant difference in comparison to juvenile control; <sup>b</sup> (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05).</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g009.tif"/>
</fig>
</sec>
</sec>
<sec id="sec56">
<label>3.3.2.2.</label>
<title>Assessment of liver tissue</title>
<p>Further, we conducted Mallory&#x2019;s Trichrome to assess the extent of collagen fiber deposition within the hepatocytes, central vein, and portal tracts in both the juvenile and adult groups. This staining technique provided valuable insights into the amount of collagen fiber accumulation in these specific areas, allowing for a better understanding of the fibrotic changes in the liver.</p>
<sec id="sec57">
<label>3.3.2.2.1.</label>
<title>Juvenile group</title>
<p>Examination of Mallory&#x2019;s trichrome stained liver sections of the juvenile control group showed few, thin collagen fibers in portal areas and around central veins. The area % of collagen fibers in the liver measured 6.46&#x2009;&#x00B1;&#x2009;1.03 (<xref rid="fig10" ref-type="fig">Figure 10</xref>). Examination of Mallory&#x2019;s trichrome stained liver sections of the juvenile model group showed enlarged portal areas with moderately increased amount of collagen fibers that appeared extending between adjacent portal areas. There was also increased collagen fibers around central veins. The area % of collagen fibers in the liver measured 9.93&#x2009;&#x00B1;&#x2009;1.24. The histological findings presented demonstrate that the administration of indomethacin leads to an increase in the deposition of collagen fibers in the liver parenchymal tissue compared to the control group. This increase may be attributed to the translocation of intestinal bacteria into the circulation, which triggers immune system activation. Subsequently, this activation leads to the infiltration of inflammatory cells, ultimately inducing the activation of hepatic stellate cells and resulting in collagen deposition.</p>
<fig position="float" id="fig10">
<label>Figure 10</label>
<caption>
<p>Showing liver sections in juvenile groups. <bold>(A&#x2013;C)</bold> Control, showing few, thin collagen fibers around central vein (CV) and in portal area (P). <bold>(D&#x2013;F)</bold> Indomethacin (Model) group. <bold>(D)</bold> Enlarged portal areas (P) with increased amount of collagen fibers. <bold>(E)</bold> Increased amount of collagen fibers (&#x2191;) around a markedly congested central vein. <bold>(F)</bold> Collagen fibers extending between adjacent portal areas (P). <italic>Mallory&#x2019;s trichrome stain: <bold><italic>(A,D)</italic></bold> &#x00D7;&#x2009;100; <bold><italic>(B,C,E,F)</italic></bold> &#x00D7;&#x2009;400.</italic></p>
</caption>
<graphic xlink:href="fncel-17-1268126-g010.tif"/>
</fig>
</sec>
<sec id="sec58">
<label>3.3.2.2.2.</label>
<title>Adult group</title>
<p>Examination of Mallory&#x2019;s trichrome stained liver sections of the adult control group showed few, thin collagen fibers in portal areas and around central veins. The area % of collagen fibers in the liver measured 5.27&#x2009;&#x00B1;&#x2009;0.852 (<xref rid="fig11" ref-type="fig">Figure 11</xref>). Assessment of Mallory&#x2019;s trichrome stained liver sections of the adult model group showed enlarged portal areas with moderately increased amount of collagen fibers that appeared extending between adjacent portal areas. There was also increased collagen fibers around central veins. Necrotic areas with central fibrosis were also seen. The area % of collagen fibers in the liver measured 7.72&#x2009;&#x00B1;&#x2009;1.44. Based on the preceding histological findings, it can be inferred that indomethacin elicited similar histological effects as observed in the juvenile group. Notably, the impact was more prominent in the juvenile group, highlighting a greater susceptibility to indomethacin-induced changes compared to adult group.</p>
<fig position="float" id="fig11">
<label>Figure 11</label>
<caption>
<p>Showing liver sections in adult groups. <bold>(A&#x2013;C)</bold> Control. <bold>(A)</bold> Collagen fibers in portal areas (P). <bold>(B)</bold> showing thin collagen fibers (&#x2191;) around a central vein (CV). <bold>(C)</bold> Section showing few, thin collagen fibers (&#x2191;) in a portal area. <bold>(D&#x2013;G)</bold> Indomethacin group. <bold>(D)</bold> Enlarged portal areas (P), with increased amount of collagen fibers. <bold>(E)</bold> Increased amount of collagen fibers (&#x2191;) around a central vein (CV). <bold>(F)</bold> Enlarged portal area (P), with increased amount of collagen fibers. <bold>(G)</bold> Focal necrosis (&#x25B4;) seen within a hepatic lobule. <italic>Mallory&#x2019;s trichrome stain: <bold><italic>(A,D)</italic></bold> &#x00D7;&#x2009;100; <bold><italic>(B,C,E,F,G)</italic></bold> &#x00D7;&#x2009;400.</italic></p>
</caption>
<graphic xlink:href="fncel-17-1268126-g011.tif"/>
</fig>
</sec>
</sec>
</sec>
<sec id="sec59">
<label>3.3.3.</label>
<title>Transmission electron microscopic (TEM) analysis</title>
<sec id="sec60">
<label>3.3.3.1.</label>
<title>Assessment of intestinal mucosa tissue</title>
<p>To obtain a comprehensive understanding of the ultrastructural changes occurring in various cell types of the intestinal wall, such as enterocytes, goblet cells, microvilli, junctional complexes, and inflammatory cells, transmission electron microscopy (TEM) was utilized to examine the jejunum. This technique allowed for a detailed analysis of the cellular structures and provided insights into the alterations taking place at the subcellular level.</p>
<sec id="sec61">
<label>3.3.3.1.1.</label>
<title>Juvenile group</title>
<p>TEM examination of the jejunum of the juvenile control group showed enterocytes with oval, basal, euchromatic nuclei and intact microvilli, goblet cell appeared full of well defined, homogenous (nearly of same density and size), secretory granules. Junctional complex was seen with its components (tight junction, adhering junction and desmosomes). Lateral membrane interdigitations were clear. Microvilli were seen intact, regular with equal lengths and widths. Occasionally, mast cells and eosinophils were seen in the subepithelial layer (<xref rid="fig3" ref-type="fig">Figure 3</xref>). TEM examination of the jejunum of the juvenile model group showed most enterocytes with irregular nuclei, few enterocytes had shrunken electron dens cytoplasm and nuclei. Goblet cells had ill defined, heterogenous (with variable densities and size) secretory granules. Mast cell (degranulated) and eosinophils were seen in the subepithelial layer. Junctional complex appeared widely separated. Some areas showed enterocytes with loss of their microvilli. Intraepithelial lymphocytes were present (<xref rid="fig12" ref-type="fig">Figure 12</xref>). The findings suggest that the administration of indomethacin leads to a reduction in the tight junctions and adherence between the microvilli, causing distortion of the enterocytes. Additionally, there is infiltration of mast cells and eosinophils. This effect highlights the ability of indomethacin to disrupt the intestinal barrier, leading to dysbiosis.</p>
<fig position="float" id="fig12">
<label>Figure 12</label>
<caption>
<p>Electron photomicrographs of the intestine of the juvenile groups. <bold>(A&#x2013;D)</bold> Control. <bold>(A)</bold> Showing normal enterocytes (En) and goblet cell (&#x002A;) with well defined, homogenous granules. <bold>(B)</bold> Showing enterocytes (En) with oval, basal, euchromatic nuclei and intact microvilli (&#x25B4;). <bold>(C)</bold> Showing junctional complex (JC), lateral membrane interdigitations (L) and microvilli (&#x25B4;). <bold>(D)</bold> Showing a mast cell (MC) with electron dens granules and an eosinophil (Eo) in the subepithelial layer. <bold>(E&#x2013;H)</bold> Indomethacin (Model) group. <bold>(E)</bold> Enterocytes (En) have irregular nuclei, goblet cells (&#x002A;) have ill defined, heterogenous secretory granules, Mast cell (M) (degranulated) and an eosinophil (Eo). <bold>(F)</bold> Enterocytes (En) with irregular nuclei, one enterocyte has shrunken electron dens cytoplasm and nucleus (&#x2191;). <bold>(G)</bold> Junctional complex (JC) appear widely separated. <bold>(H)</bold> Enterocytes with loss of their microvilli (&#x25B4;), intraepithelial lymphocyte (Ly). <italic>TEM: <bold><italic>(D,E,H)</italic></bold> &#x00D7;&#x2009;1,000; <bold><italic>(A,B,F)</italic></bold> &#x00D7;&#x2009;1,500; <bold><italic>(C,G)</italic></bold> &#x00D7;&#x2009;7,500</italic>.</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g012.tif"/>
</fig>
</sec>
<sec id="sec62">
<label>3.3.3.1.2.</label>
<title>Adult group</title>
<p>TEM examination of the jejunum of the adult control group showed normal enterocytes with oval nuclei, and goblet cells with electron dens secretory granules and rER. Components of junctional complex were clear, and microvilli were regular and intact. Few eosinophils were found in the subepithelial layer (<xref rid="fig13" ref-type="fig">Figure 13</xref>). TEM examination of the jejunum of the adult model group showed some enterocytes with electron dens, vacuolated cytoplasm, goblet cells had electron lucent secretory granules and condensed electron dens cytoplasm. Junctional complex appeared abnormal (short and destructed) as compared to the control group. Inflammatory infiltrate seen in subepithelial layer contained many eosinophils and mast cells. In some areas, enterocytes appeared with loss of their microvilli (<xref rid="fig14" ref-type="fig">Figure 14</xref>). Based on the previous histological findings, it can be concluded that indomethacin administration resulted in histological changes similar to those observed in the juvenile group. Notably, the effects of indomethacin were more pronounced in the juvenile group.</p>
<fig position="float" id="fig13">
<label>Figure 13</label>
<caption>
<p>Representative graphs showed the correlation between ASMA and ANA expression and the degree of ASD severity in control <bold>(A,C)</bold> and disease groups <bold>(B,D)</bold>; where 1&#x2009;=&#x2009;mild social communication &#x0026; 2&#x2009;=&#x2009;moderate restricted &#x0026; 3&#x2009;=&#x2009;repetitive behaviors.</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g013.tif"/>
</fig>
<fig position="float" id="fig14">
<label>Figure 14</label>
<caption>
<p>Electron photomicrographs of the intestine of the adult groups. <bold>(A&#x2013;D)</bold> Control. <bold>(A)</bold> Showing normal enterocytes (E) with oval nuclei, and goblet cells (&#x002A;). <bold>(B)</bold> A goblet cell (&#x002A;) with electronwell defined, homogenous dens secretory granules and rER. <bold>(C)</bold> Showing junctional complex (JC), and microvilli (&#x25B4;). <bold>(D)</bold> An eosinophil (Eo) in the subepithelial layer. <bold>(E&#x2013;J)</bold> Indomethacin (Model) group. <bold>(E)</bold> A goblet cell (&#x002A;) with few ill defined, heterogenous secretory granules, and intraepithelial lymphocyte (Ly). <bold>(F)</bold> A goblet cell (&#x002A;) with ill defined, heterogenous secretory granules and electron dens cytoplasm. <bold>(G)</bold> Showing abnormal (short and destructed) junctional complex (JC). <bold>(H)</bold> Inflammatory infiltrate in subepithelial layer mainly eosinophils (Eo) and mast cells (MC). <bold>(I)</bold> Showing enterocytes (En) with electron dens, vacuolated cytoplasm. <bold>(J)</bold> ENTEROCYTES with loss of their microvilli (&#x25B4;). <italic>TEM: <bold><italic>(A,E,H,I)</italic></bold></italic> <italic>&#x00D7;&#x2009;1,000</italic>; <bold><italic>(B,F)</italic></bold> <italic>&#x00D7;&#x2009;1,500</italic>; <bold><italic>(D,J)</italic></bold> <italic>&#x00D7;&#x2009;2000</italic>; <bold><italic>(G)</italic></bold> <italic>&#x00D7;&#x2009;4,000</italic>; <bold><italic>(C)</italic></bold> <italic>&#x00D7;&#x2009;6,000</italic>.</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g014.tif"/>
</fig>
</sec>
</sec>
<sec id="sec63">
<label>3.3.3.2.</label>
<title>Assessment of liver tissue</title>
<p>To examine the effect of indomethacin administration on the ultrastructure of liver tissue, TEM analysis was applied on liver sections.</p>
<sec id="sec64">
<label>3.3.3.2.1.</label>
<title>Juvenile group</title>
<p>TEM examination of the liver of the juvenile control group showed hepatocyte polygonal in shape with euchromatic central rounded nuclei and prominent nucleoli. Their cytoplasm contained numerous mitochondria and regular, closely packed cisternae of rough endoplasmic reticulum (rER). Sometimes bile canaliculi were seen between adjacent hepatocytes (<xref rid="fig15" ref-type="fig">Figure 15</xref>). TEM examination of the liver of the juvenile model group showed hepatocytes with dilated, distorted cisternae of rER. Occasionally a lymphocyte could be seen inside a hepatocyte (Emperipolesis). Plasma cells appeared in between hepatocytes. Hepatocytes contained many peroxisomes in their cytoplasm. Bundle of collagen fibers were deposited in between hepatocytes (<xref rid="fig15" ref-type="fig">Figure 15</xref>). Based on these histological findings, it can be concluded that the administration of indomethacin triggered the activation of the immune system by inducing intestinal bacterial translocation. As a consequence, lymphocytes and plasma cells targeted the liver cells, leading to hepatocyte damage.</p>
<fig position="float" id="fig15">
<label>Figure 15</label>
<caption>
<p>Electron photomicrographs of the liver of the juvenile groups. <bold>(A,B)</bold> Control. <bold>(A)</bold> Showing polygonal hepatocyte (H) with euchromatic central rounded nucleus (n) and prominent nucleolus (waved arrow). <bold>(B)</bold> Showing mitochondria (m), rough endoplasmic reticulum (rER) and a bile canaliculus (&#x2191;). <bold>(C&#x2013;G)</bold> Indomethacin (Model) group. <bold>(C)</bold> Showing rER with dilated, distorted cisternae. <bold>(D)</bold> Showing collagen fibers (curved arrow) deposited in between hepatocytes. <bold>(E)</bold> Showing a lymphocyte (Ly) inside a hepatocyte (Emperipolesis). <bold>(F)</bold> A plasma cell (Pc) in between hepatocytes. <bold>(G)</bold> Many peroxisomes (&#x2191;) in a hepatocyte and a bundle of collagen fibers (&#x25B4;). v<italic>TEM: <bold><italic>(A,E)</italic></bold> &#x00D7;&#x2009;1,000; <bold><italic>(C,D,F)</italic></bold> &#x00D7;&#x2009;1,200; <bold><italic>(B,G)</italic></bold> &#x00D7;&#x2009;3,000</italic>.</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g015.tif"/>
</fig>
</sec>
</sec>
</sec>
<sec id="sec65">
<label>3.3.4.</label>
<title>Immunohistochemical analysis</title>
<p>To examine the effect of indomethacin administration on the activation of caspase 8 expression, detailed immunohistochemical study was conducted. Examination of immunohistochemically stained liver sections for detection of positive expression of Caspase-8 in the juvenile control group showed minimal reaction. The number of hepatocytes with positive expression of Caspase-8 revealed 4.50&#x2009;&#x00B1;&#x2009;0.428 (<xref rid="fig16" ref-type="fig">Figures 16</xref>, <xref rid="fig17" ref-type="fig">17</xref>). Assessment of immunohistochemically stained liver sections for detection of positive expression of Caspase-8 in the juvenile model group showed significantly increased reaction. The number of hepatocytes with positive expression of Caspase-8 measured as 38.67&#x2009;&#x00B1;&#x2009;2.31 (<xref rid="fig18" ref-type="fig">Figure 18</xref>). These results emphasize the impact of indomethacin-induced dysbiosis on increasing the expression of caspase 8, resulting in the subsequent activation of the NLRP3 inflammasome pathway.</p>
<fig position="float" id="fig16">
<label>Figure 16</label>
<caption>
<p>Representative graphs showed the correlation between JAK1 and IL-6 expression and degree of ASD severity in control <bold>(A,C)</bold> and disease groups <bold>(B,D)</bold>; where 1&#x2009;=&#x2009;mild social communication &#x0026; 2&#x2009;=&#x2009;moderate restricted &#x0026; 3&#x2009;=&#x2009;repetitive behaviors.</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g016.tif"/>
</fig>
<fig position="float" id="fig17">
<label>Figure 17</label>
<caption>
<p>Representative diagram for the proposed mode of action of NSAID-induced dysbiosis on the development of AIH and severity of ASA.</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g017.tif"/>
</fig>
<fig position="float" id="fig18">
<label>Figure 18</label>
<caption>
<p>Showing liver sections with Caspase-8 immunostaining in juvenile <bold>(A,B)</bold> and adult <bold>(C,D)</bold> groups. <bold>(A,C)</bold> Control, showing few hepatocytes with positive expression of Caspase-8 (&#x2191;). <bold>(B,D)</bold> Indomethacin group, showing many hepatocytes with positive expression of Caspase-8 (&#x2191;). <italic>Caspase-8: <bold><italic>(A,D)</italic></bold> &#x00D7;&#x2009;400</italic>. <bold>(E)</bold> Effect of daily oral administration of indomethacin (3&#x2009;mg/kg, 4&#x2009;weeks) on the number of cells positive to caspase 8. Data are presented as mean&#x2009;&#x00B1;&#x2009;SD using Unpaired <italic>T</italic>-test. <italic>n</italic>&#x2009;=&#x2009;6. <sup>a</sup> significant difference in comparison to adult control; <sup>a</sup> (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05), <sup>b</sup> significant difference in comparison to juvenile control; <sup>b</sup> (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05).</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g018.tif"/>
</fig>
<p>Further, the expression of caspase 8 in liver tissue in adult group was examined by immunohistochemistry study. Investigation of immunohistochemically stained liver sections for detection of positive expression of caspase-8 in the adult control group showed few hepatocytes with positive expression of Caspase-8. They appeared with dark brown reaction in their cytoplasm. The number of hepatocytes with positive expression of Caspase-8 measured as 5.66&#x2009;&#x00B1;&#x2009;0.494 (<xref rid="fig17" ref-type="fig">Figure 17</xref>). Assessment of immunohistochemically stained liver sections for detection of positive expression of caspase-8 in the adult-treated group showed significantly increased reaction. The number of hepatocytes with positive expression of caspase-8 assessed as 51.33&#x2009;&#x00B1;&#x2009;3.39 (<xref rid="fig18" ref-type="fig">Figure 18</xref>). These histological findings suggest that indomethacin induces similar histological changes as observed in the juvenile group. However, the effects of indomethacin were notably more pronounced in the juvenile group.</p>
<p>We conducted further analysis to evaluate the extent of collagen fiber area in the small intestine of both the juvenile and adult groups. The results demonstrated that the untreated groups of both juveniles and adults exhibited a normal collagen fiber area, measuring 4.83 and 5.27%, respectively. In contrast, when indomethacin (3&#x2009;mg/kg/day) was administered for a duration of 4&#x2009;weeks, there was a significant (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05) increase in the collagen fiber area (%) within the submucosa and lamina propria of the small intestine. The juvenile treated group showed an area of 14.32%, while the adult treated group exhibited an area of 19.54%, as compared to the control groups (<xref rid="fig19" ref-type="fig">Figure 19</xref>). Lastly, we evaluated the area of collagen fibers in the liver tissue of both the juvenile and adult groups. Similar to the results observed in the small intestine, the untreated groups exhibited a normal range of collagen fiber area in both the juvenile (6.46%) and adult (5.27%) groups. However, when indomethacin was administered at a dosage of 3&#x2009;mg/kg/day for a duration of 4&#x2009;weeks, there was a significant (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.01) increase in the percentage of collagen fiber area in the liver tissue of both the juvenile (9.93%) and adult (7.72%) treated groups, as compared to the control groups (<xref rid="fig19" ref-type="fig">Figure 19</xref>). The findings of increased collagen fiber area in the intestinal submucosa and lamina propria in the indomethacin-treated group compared to the control group suggest a potential association between indomethacin administration, intestinal fibrosis, and the development of AIH in the context of ASD.</p>
<fig position="float" id="fig19">
<label>Figure 19</label>
<caption>
<p>Effect of daily oral administration of indomethacin (3 mg/kg, 4 weeks) on the area% of collagen fibers in intestinal submucosa and lamina propria <bold>(A)</bold>, and in liver tissue <bold>(B)</bold>. Data are presented as mean&#x2009;&#x00B1;&#x2009;SD using Unpaired <italic>T</italic>-test. n&#x2009;=&#x2009;6. <sup>a</sup> significant difference in comparison to adult control; <sup>a</sup> (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05), <sup>b</sup> significant difference in comparison to juvenile control; <sup>b</sup> (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05).</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g019.tif"/>
</fig>
</sec>
</sec>
<sec id="sec66">
<label>3.4.</label>
<title>Clinical studies</title>
<p>NSAIDs drugs are administered to a significant number of infants and young children during their early stages of life. These medications serve as pain relievers, fever reducers, and are also used to promote the closure of patent ductus arteriosis (<xref ref-type="bibr" rid="ref111">Ziesenitz et al., 2022</xref>). Notable medical records of children with ASD have revealed that a certain proportion of them were administered NSAIDs during their early years, while another percentage was diagnosed with autoimmune liver disease (<xref ref-type="bibr" rid="ref42">Hodges et al., 2020</xref>). Encouraged by these facts and by our biochemical, histological and immunological findings, we hypothesized that there is a close association between indomethacin administration, intestinal dysbiosis, AIH, and ASD severity, especially in the juvenile group. Accordingly, we conducted an initial clinical study with the objective of investigating the relationship between the markers identified in our <italic>in vivo</italic> experimental research and the level of severity observed in individuals with ASD. Furthermore, our objective was to explore the potential molecular connection between autoimmune liver disease and ASD, ultimately establishing the relationship between dysbiosis, AIH, and the severity of ASD symptoms. The identification of this correlation between the potential markers and the severity of ASD could serve as a valuable tool for early diagnosis and prognosis of the disease, particularly in children who have been exposed to NSAIDs during their early years and are also affected by autoimmune liver disease.</p>
<sec id="sec67">
<label>3.4.1.</label>
<title>Exploration of the correlation between liver function test and degree of ASD severity</title>
<p>To investigate the possible association between impaired liver function and the severity of ASD symptoms, we assessed the serum ALT and AST levels in control and disease group and conducted a correlation study. In control group, the results revealed a non-significant correlation between serum ALT and AST levels and ASD severity, (<italic>R</italic>&#x2009;=&#x2009;0.03506) and (<italic>R</italic>&#x2009;=&#x2009;0.1946), respectively (<xref rid="fig20" ref-type="fig">Figure 20</xref>). On the other hand, there was a significant (<italic>p</italic> &#x003C;&#x2009;0.001) positive correlation between serum ALT (<italic>R</italic> =&#x2009;0.4188) and AST (<italic>R</italic> =&#x2009;0.9147) levels and the degree of ASD severity in the disease group (<xref rid="fig20" ref-type="fig">Figure 20</xref>). The significant positive correlation between serum ALT and AST levels and the degree of ASD severity in the disease group suggests a potential link between compromised liver function and the severity of ASD symptoms.</p>
<fig position="float" id="fig20">
<label>Figure 20</label>
<caption>
<p>Representative graphs showed the correlation between serum ALT and AST levels and the degree of ASD severity in control <bold>(A,C)</bold> and disease groups <bold>(B,D)</bold>; where 1&#x2009;=&#x2009;mild social communication &#x0026; 2&#x2009;=&#x2009;moderate restricted &#x0026; 3&#x2009;=&#x2009;repetitive behaviors.</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g020.tif"/>
</fig>
</sec>
<sec id="sec68">
<label>3.4.2.</label>
<title>Exploration of the correlation between autoimmune markers (ASMA and ANA) and the degree of ASD severity</title>
<p>ASMA and ANA are widely recognized markers that exhibit elevated levels in various autoimmune diseases, particularly in cases of autoimmune liver disease (<xref ref-type="bibr" rid="ref109">Zeman and Hirschfield, 2010</xref>). To affirm the association between autoimmune liver disease and ASD severity, we assessed the expression of ASMA and ANA markers and performed a correlation study analysis toward ASD severity in control and diseased group. As displayed in <xref rid="fig13" ref-type="fig">Figure 13</xref>, the results demonstrated a non-significant correlation between ASMA and ANA serum levels and ASD severity (<italic>R</italic>&#x2009;=&#x2009;0.2272) &#x0026; (<italic>R</italic>&#x2009;=&#x2009;0.01045), respectively. Interestingly, in the diseased group, the results revealed a significant (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.001) positive correlation between ASMA and ANA expression levels and the degree of ASD severity, (<italic>R</italic>&#x2009;=&#x2009;0.8278) &#x0026; (<italic>R</italic>&#x2009;=&#x2009;0.7561), respectively (<xref rid="fig13" ref-type="fig">Figure 13</xref>). ANA and ASMA are peripheral inflammatory markers recognized for their involvement in autoimmune liver diseases, and research has indicated their heightened expression in children who were administered NSAIDs during their early years (<xref ref-type="bibr" rid="ref85">Muratori et al., 2023</xref>). Moreover, these markers are found to be highly expressed in children with ASD history (<xref ref-type="bibr" rid="ref40">Higazi et al., 2021</xref>). Considering these facts and our findings, a potential connection may emerge between the disruption of intestinal permeability induced by NSAIDs and the progression of ASD severity in children. Furthermore, our results underscore the potential significance of ASMA and ANA expression as promising prognostic markers for children with ASD and a history of autoimmune liver disease.</p>
</sec>
<sec id="sec69">
<label>3.4.3.</label>
<title>Exploration of the correlation between inflammatory markers (NLRP3 &#x0026; IL18) and degree of ASD severity</title>
<p>To affirm the connection between the activation of the NLPR3 inflammasome pathway in children exposed to NSAIDs and the level of severity of ASD, the expression of serum NLRP3 and IL18 genes were examined and a correlation study analysis with ASD severity in the control and diseased groups was performed. In agreement with our hypothesis, the results demonstrated a non-significant correlation between expression levels of NLRP3 and IL-18 genes and the degree of ASD severity in the control group (<italic>R</italic> =&#x2009;0.05931) and (<italic>R</italic> =&#x2009;0.1960), respectively. Meanwhile, a significant (<italic>p</italic> &#x003C;&#x2009;0.0001) positive correlation between expression levels of NLRP3 and IL-18 genes and the degree of ASD severity (<italic>R</italic> =&#x2009;0.8375) and (<italic>R</italic> =&#x2009;0.6767), respectively were noticed in the diseased group (<xref rid="fig21" ref-type="fig">Figure 21</xref>). NLRP3 inflammasome plays key role in the modulation of liver inflammation and fibrosis through NLRP3/IL-18 inflammasome pathway. Further, NLRP3 inflammasome pathway is highly related to intestinal dysbiosis and autoimmune reaction progression in the liver tissue (<xref ref-type="bibr" rid="ref13">Blevins et al., 2022</xref>). In numerous psychiatric disorders, elevated levels of IL-1 and IL-18 serve as indicators for the activation of the NLRP3 inflammasome. The NLRP3 inflammasome, being a valuable diagnostic biomarker, has been previously characterized in various mental health conditions, encompassing depression, Alzheimer&#x2019;s disease, anxiety disorders, cognitive impairments, post-traumatic stress disorder, and autism spectrum disorders (<xref ref-type="bibr" rid="ref16">&#x00C7;elik et al., 2022</xref>). In children with ASD, an increase in the NLRP3 inflammasome and another inflammasome complex, absent in melanoma 2, and accordingly the production of IL-1&#x03B2; and IL-18 inflammatory cytokines were observed. Central and peripheral IL-1&#x03B2; reduces neurogenesis and increases anxiety, stress, and abnormal social interaction (<xref ref-type="bibr" rid="ref73">Masi et al., 2017</xref>). Our presented findings revealed that the elevated levels of NLRP3/IL-18 inflammatory markers are also associated with the severity of ASD in children who previously received NSAIDs. Taken together, these results affirm the correlation between NSAIDs-induced dysbiosis, AIH, and ASD severity, and further, suggest NLPR3 and IL18 genes as appropriate prognostic markers for early diagnosis of ASD children with AIH history.</p>
<fig position="float" id="fig21">
<label>Figure 21</label>
<caption>
<p>Representative graph showed the correlation between serum NLRP3 and IL18 expression levels and the degree of ASD severity in control <bold>(A,C)</bold> and disease groups <bold>(B,D)</bold>; where 1&#x2009;=&#x2009;mild social communication &#x0026; 2&#x2009;=&#x2009;moderate restricted &#x0026; 3&#x2009;=&#x2009;repetitive behaviors.</p>
</caption>
<graphic xlink:href="fncel-17-1268126-g021.tif"/>
</fig>
</sec>
<sec id="sec70">
<label>3.4.4.</label>
<title>Exploration of the correlation between neuronal inflammatory markers (JAK1 and IL-6 expression) and degree of ASD severity</title>
<p>Finally, to affirm the role of AIH and ASD in children exposed to NSAIDs in their early life, we have assessed the expression of JAK1 and IL6 genes expression and a correlation analysis study with ASD severity has been conducted in both control and diseased groups. As shown in <xref rid="fig16" ref-type="fig">Figure 16</xref>, a non-significant correlation between expression levels of JAK1 (R&#x2009;=&#x2009;0.01319) and IL-6 (R&#x2009;=&#x2009;0.03005) genes and the degree of ASD severity was observed in the control group. Conversely, there was a significant (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.0001) positive correlation between expression levels of JAK1 and IL-6 genes and the degree of ASD severity, (<italic>R</italic>&#x2009;=&#x2009;0.7966) and (<italic>R</italic>&#x2009;=&#x2009;0.7121), respectively, in the diseased group (<xref rid="fig16" ref-type="fig">Figure 16</xref>). Previous reports revealed that JAK1 expression is highly elevated in children with liver disease and that JAK1-signaling pathway is significantly activated in children with ASD, suggesting the association of neuroinflammation (<xref ref-type="bibr" rid="ref49">Jiang et al., 2022</xref>). Further, the expression of JAK1 is strongly linked to increased levels of IL-6, which has been demonstrated to disrupt the adhesion and movement of neuronal cells. This disruption ultimately results in an imbalance between excitatory and inhibitory circuits in individuals with ASD (<xref ref-type="bibr" rid="ref98">Shen et al., 2021</xref>). Taken together, our findings suggest that children who develop autoimmune hepatitis as a result of NSAIDs-induced dysbiosis may be at risk of experiencing autism spectrum disorder during their lifetime.</p>
</sec>
</sec>
</sec>
<sec sec-type="discussions" id="sec71">
<label>4.</label>
<title>Discussion</title>
<p>Autism spectrum disorder is influenced by a diversity of genetic, environmental, and immunological factors (<xref ref-type="bibr" rid="ref74">Matelski and Van de Water, 2016</xref>). Moreover, pharmaceutical drugs, toxicants, metabolic and nutritional factors, and immunologic risk factors have been identified as increasing autism risk (<xref ref-type="bibr" rid="ref22">Delaye et al., 2018</xref>). However, the clinical diagnosis is founded primarily on the development of complex behavioral disorders by the age of 12&#x2013;18&#x2009;months (<xref ref-type="bibr" rid="ref104">Wan et al., 2013</xref>). Therefore, the proposed therapies that need more investigation include special diets, probiotics, immune modulation, oxytocin, and personalized pharmacogenomic targets (<xref ref-type="bibr" rid="ref12">Bharathi et al., 2019</xref>; <xref ref-type="bibr" rid="ref93">Quaranta et al., 2019</xref>). Given the need for evidence to establish the correlation between ASD and autoimmune mechanisms, the aim was to identify a specific immunological signature for ASD to have a better understanding of the link between ASD, dysbiosis, and AIH.</p>
<p>In our experimental study indomethacin produced AIH and this was confirmed by the histopathological examination which revealed the presence of salient features of AIH. Inflammatory cell infiltration including lymphocytes and plasma cells was found in indomethacin-treated rats both juvenile and adult animals. Multinucleated giant cells, rosettes, and intact lymphocytes were found in hepatic tissue. Aggregation of the inflammatory cells around the central vain and extending beyond the portal area &#x2013; interphase hepatitis. Moreover, intact lymphocytes were noticed inside the hepatocytes giving rise to the characteristic feature of emperipolesis. Furthermore, collagen fibers were abundant in hepatic tissue detected by Mallory&#x2019;s trichrome in both juvenile and adult animals. In addition, Caspase-8 was abundantly expressed in both juvenile and adult indomethacin-treated rats with significantly increased reaction compared to the control group. These features are typical of AIH as recommended by the American Association for the Study of Liver diseases (AASLD) (<xref ref-type="bibr" rid="ref70">Manns et al., 2010</xref>) and the European Association for the Study of the Liver (EASL) (<xref ref-type="bibr" rid="ref25">EASL Clinical Practice Guidelines, 2015</xref>) guidelines. According to the guidelines, it was stated that the presence of hepatic inflammation irrespective of the degree, interface hepatitis, and plasma cells are the hallmark of the diagnosis of AIH (<xref ref-type="bibr" rid="ref19">Covelli et al., 2021</xref>). Emperipolesis and hepatic rosette formation are mandatory in the diagnosis of the typical form of AIH as well (<xref ref-type="bibr" rid="ref39">Hennes et al., 2008</xref>). Consequently, the current study represents a typical model of AIH. Besides, AIH is characterized by the upregulation of apoptosis mechanisms, either intrinsic or extrinsic pathways. Caspase-8 mediates the intrinsic mitochondrial pathway as well as the extrinsic legend-mediated pathway (<xref ref-type="bibr" rid="ref20">Czaja, 2014</xref>). Therefore, Caspase-8 is considered a therapeutic target in AIH (<xref ref-type="bibr" rid="ref23">Dempke et al., 2017</xref>; <xref ref-type="bibr" rid="ref38">Hendawy, 2017</xref>). The detection of Caspase-8 in the indomethacin-treated rats is a strong prediction of AIH in our model (<xref rid="fig17" ref-type="fig">Figure 17</xref>).</p>
<p>In the present study, gram-negative bacteria were dominant in blood culture after the administration of indomethacin to both juvenile and adult Wistar rats. The predominant organisms were E-coli, Enterococcus spp., and Klebsiella spp. Non-steroidal anti-inflammatory drugs (NSAID) were established to cause gastrointestinal injury including stomach, duodenum, and distal small intestine -drug-induced enteropathy. Consequently, NSAID induces dysbiosis with the predominance of gram-negative bacteria over gram-positive bacteria (<xref ref-type="bibr" rid="ref94">Rogers and Aronoff, 2016</xref>; <xref ref-type="bibr" rid="ref72">Maseda et al., 2019</xref>). However, the dynamics of dysbiosis in the small intestine remain to be elucidated (<xref ref-type="bibr" rid="ref110">Zhang et al., 2022</xref>). Therefore, the current study is in accordance with the current literature emphasizing the significant role of indomethacin, an NSAID, in intestinal epithelial injury and dysbiosis.</p>
<p>In the present study, there was increased thickness of the mucosa and the width of the villi. The indomethacin-received groups showed swollen and distorted villi with sloughed tips. Most of the enterocytes appeared cubical with rounded nuclei. The core of the villi was markedly vacuolated (edematous). The goblet cells showed ill-defined secretory granules with diverse densities and sizes. Most of the villi were with unapparent collagen fibers. However, collagen fibers were abundant in the submucosa. Submucosa collagen fibers were discontinuous and irregular. MNC infiltration was noticed as well.</p>
<p>After a single subcutaneous injection of indomethacin (10&#x2009;mg/kg), <xref ref-type="bibr" rid="ref59">Lang et al. (1988)</xref> detected two brief terminal ileal structures that were characterized histologically by submucosal fibrosis and mucosal villous distortion. The same findings were found by <xref ref-type="bibr" rid="ref86">Nakajima et al. (2012)</xref>, and they suggested that edema and neutrophil infiltration could be to blame. In addition, rats who were given indomethacin exhibited symptoms such as granulomatous inflammation, villus atrophy, crypt hyperplasia, and depletion of Paneth cells and goblet cells (<xref ref-type="bibr" rid="ref17">Chamoun-Emanuelli et al., 2019</xref>). These pathological changes, which were attributed to the administration of indomethacin, were postulated to result in the disruption of the intestinal barrier (analgesic enteropathy) and the leakage of intestinal bacteria and certain toxins, both of which have the potential to reach the liver cells through the portal circulation and induce AIH. Clinical trials provided evidence that lent weight to this perspective (<xref ref-type="bibr" rid="ref75">Matsumoto et al., 2006</xref>). <xref ref-type="bibr" rid="ref75">Matsumoto et al. (2006)</xref> reported mild to moderate inflammatory infiltrates in the lamina propria with atrophy along with, apoptotic cells in the epithelia and lymph follicle in the submucosa of the villi that were correlated with NSAID administration.</p>
<p>In this study, hepatic aminotransferase enzymes, AST and ALT, were shown to rise in both indomethacin-treated juvenile and adult rat groups compared to control groups. In addition, a positive correlation was found between the level of hepatic aminotransferase enzymes and ASD severity. The rise of aminotransferase is an indication of liver cell injury (<xref ref-type="bibr" rid="ref19">Covelli et al., 2021</xref>). Drug-induced AIH, including indomethacin in therapeutic doses, showed a high titer of AST and ALT (<xref ref-type="bibr" rid="ref68">Lucas, 2016</xref>; <xref ref-type="bibr" rid="ref103">Tan et al., 2022</xref>). Noteworthy, accumulating evidence from the literature support the impact of NSAIDs, including indomethacin, on small and large intestine leading to dysbiosis in preclinical and clinical studies (<xref ref-type="bibr" rid="ref61">L&#x00E1;z&#x00E1;r et al., 2021</xref>). Furthermore, recent evidence suggests the implication of dysbiosis in the pathogenesis of autism in children (<xref ref-type="bibr" rid="ref69">&#x0141;ukasik et al., 2019</xref>; <xref ref-type="bibr" rid="ref90">Pan et al., 2022</xref>). Moreover, autoimmune inflammation has been implicated in the pathogenesis of autism (<xref ref-type="bibr" rid="ref99">Singh, 2009</xref>). Taken together, Therefore, the elevation of aminotransferases, noticed in this study, in correlation with ASD suggests the relationship between indomethacin-induced dysbiosis, AIH, and the autistic behavior noticed in children who received NSAIDs (<xref rid="fig17" ref-type="fig">Figure 17</xref>).</p>
<p>The current study showed a significant rise of circulating autoantibodies -ANA and ASMA- in indomethacin-treated juvenile and adult rat groups. In addition, these autoantibodies were noticed to be correlated with children with ASD. Circulating autoantibodies are considered the cornerstone in AIH type 1 diagnosis (<xref ref-type="bibr" rid="ref105">Wang et al., 2021</xref>). Given the similarity of the clinical pattern of drug-induced AIH to idiopathic AIH (<xref ref-type="bibr" rid="ref63">Licata et al., 2014</xref>), non-steroidal anti-inflammatory drugs (NSAIDs) have been considered culprits in AIH with circulating autoantibodies (<xref ref-type="bibr" rid="ref103">Tan et al., 2022</xref>). The literature suggested that there is a correlation between ASD and autoantibodies (<xref ref-type="bibr" rid="ref101">Sotgiu et al., 2020</xref>; <xref ref-type="bibr" rid="ref96">Rossignol and Frye, 2021</xref>; <xref ref-type="bibr" rid="ref76">McLellan et al., 2022</xref>) including, but not limited to, ANA, an anti-ribosomal P protein, and anti-endothelial cell antibodies (<xref ref-type="bibr" rid="ref112">Zou et al., 2020</xref>). Several studies correlated ASD with autoimmune diseases of the mother including rheumatoid arthritis and celiac disease (<xref ref-type="bibr" rid="ref5">Atlad&#x00F3;ttir et al., 2009</xref>) and an increase in the serum level of anti-myelin-basic protein autoantibodies (<xref ref-type="bibr" rid="ref82">Mostafa and AL-Ayadhi, 2011</xref>; <xref ref-type="bibr" rid="ref83">Mostafa and Al-Ayadhi, 2013</xref>). However, there is lack of comparison control studies to elicit solid evidence (<xref ref-type="bibr" rid="ref101">Sotgiu et al., 2020</xref>).</p>
<p>On the other hand, the gut microbiota has been emphasized as a key factor in the development of ASD (<xref ref-type="bibr" rid="ref44">Hughes et al., 2018</xref>). It was concluded that the development and severity of ASD features were correlated with dysbiosis (<xref ref-type="bibr" rid="ref45">Iglesias-V&#x00E1;zquez et al., 2020</xref>). However, there is a lack of consistency in the reported gut microbiome changes across ASD studies (<xref ref-type="bibr" rid="ref41">Ho et al., 2020</xref>), Administration of probiotics containing a mixture of <italic>Bifidobacteria, Streptococci</italic> and <italic>Lactobacilli</italic> showed promising results in the treatment of ASD (<xref ref-type="bibr" rid="ref31">Fattorusso et al., 2019</xref>). Furthermore, microbiota transfer therapy was suggested to restore gut symbiosis, thus improving children with ASD (<xref ref-type="bibr" rid="ref52">Kang et al., 2019</xref>). Our results, in line with the existing literature, showed a strong association between indomethacin and AIH on the one hand and autoantibodies as a marker of AIH and ASD on the other. Concerning the association between indomethacin and dysbiosis, a possible connection between dysbiosis, AIH, and ASD can be predicted.</p>
<p>The current study showed a significant rise in NLRP3, caspase-1, and IL-18 in indomethacin-treated juvenile and adult groups. There was a positive correlation between both NLRP3 and IL-18 and ASD severity. The NLRP3 inflammasome controlled the innate immune system responses against infection (<xref ref-type="bibr" rid="ref92">P&#x00E9;trilli et al., 2007</xref>). Uncontrolled activation of the NLRP3 inflammasome by non-pathogenic host stimuli has been implicated in the development of autoimmune disease (<xref ref-type="bibr" rid="ref27">Elliott and Sutterwala, 2015</xref>). Caspase-1 mediates the NLRP3 cascade through the activation of inactive pro-IL-18 (<xref ref-type="bibr" rid="ref108">Zannetti et al., 2016</xref>) leading to the initiation of the innate immune system (<xref ref-type="bibr" rid="ref27">Elliott and Sutterwala, 2015</xref>). Over-expression of NLRP3 inflammasome and cleaved levels of caspase-1 were reported in Concanavalin A (ConA)-induced hepatitis animal model (<xref ref-type="bibr" rid="ref35">Guan et al., 2022</xref>). Conversely, the mitigation of hepatocellular damage in NLRP3<sup>&#x2212;/&#x2212;</sup> mice compared to wild-type animals suggested the key role of NLRP3 in the pathogenesis of AIH (<xref ref-type="bibr" rid="ref67">Luan et al., 2018</xref>). Moreover, caspase-1 activation through NLRP3 mediates interleukin activation including IL-1&#x03B2; and IL-18 leading to hepatic cell damage (<xref ref-type="bibr" rid="ref51">Kamo et al., 2013</xref>). However, it was speculated that IL-18 rather than IL-1&#x03B2; was abundant in the fatal AIH model with amelioration of the AIH progression following <italic>in-vivo</italic> demonstration of anti-IL-18R (<xref ref-type="bibr" rid="ref46">Ikeda et al., 2014</xref>). The key role of IL-18 in AIH was further supported by the mitigation of hepatic inflammation through the implementation of caspase-1 inhibitors, IL-18 monoclonal antibodies, and soluble IL-18 inhibitors (<xref rid="fig17" ref-type="fig">Figure 17</xref>) (<xref ref-type="bibr" rid="ref46">Ikeda et al., 2014</xref>).</p>
<p>On the other hand, IL-18 has been implicated in dysbiosis. Accumulating evidence from preclinical studies proved that NLRP3 and IL-18 are implicated in the dysbiosis of gut microbiota with consequent development of liver cell inflammation and hepatocyte damage (<xref ref-type="bibr" rid="ref24">Dinarello, 2007</xref>; <xref ref-type="bibr" rid="ref37">Henao-Mejia et al., 2012</xref>). Therefore, the significant increase in the expression of hepatic NLRP3 supports its critical role in the initiation and progression of inflammation through NLRP3/caspase-1/IL-18 inflammasome and the correlation with intestinal dysbiosis. The changes of NLRP3/caspase-1/IL-18 were notable in children with ASD who previously received NSAIDs. Given the implication of indomethacin in dysbiosis and AIH, the connection between the degree of autistic behavior and the elevated level of the inflammasomes biomarkers suggests the close correlation between dysbiosis, AIH, and ASD (<xref rid="fig17" ref-type="fig">Figure 17</xref>).</p>
<p>There is accumulating evidence of impaired immunity occurring in individuals with ASD both immediately after birth and through the course of the disease progression (<xref ref-type="bibr" rid="ref44">Hughes et al., 2018</xref>). Neuroinflammation involving microglia, increased inflammatory cytokine and chemokine production in post-mortem brain tissue, systemic alterations of immune proteins, and reduced immunoglobulin (Ig) antibody production are some of the pieces of evidence that point to the possibility of an immune dysfunction being involved in autism (<xref ref-type="bibr" rid="ref89">Onore et al., 2012</xref>).</p>
<p>JAK/STAT molecules are essential for cytokine signaling allowing a better understanding of the role of cytokine activation in disease processes (<xref ref-type="bibr" rid="ref64">Linossi et al., 2018</xref>). JAK is activated by the binding of IL-6 to its receptor IL-6R on the surface of the cell, thus initiating the downstream process (<xref ref-type="bibr" rid="ref84">Murakami et al., 2019</xref>). Recent studies found that there is a positive correlation between JAK1 and IL-6 expression and ASD severity. JAK1 is a tyrosine kinase belonging to the Janus kinase/ signal transducers and activators of transcription (JAK/STAT) which mediates the downstream pathway of different interleukins such as IL-6, IL-2, and IL-10 (<xref ref-type="bibr" rid="ref87">O&#x2019;Shea et al., 2015</xref>). The mutation of JAK1 was concluded to be associated with an autoinflammatory skin disease associated with liver dysfunction and ASD (<xref ref-type="bibr" rid="ref102">Takeichi et al., 2022</xref>). Furthermore, Ahmed and colleagues found increased mRNA and protein expression for JAK1, pJAK1, STAT5, and pSTAT5 in ASD compared to control suggesting the presence of a correlation between ASD and the upregulation of JAK&#x2013;STAT signaling (<xref ref-type="bibr" rid="ref4">Ahmad et al., 2017</xref>).</p>
<p>IL-6 plays a substantial role in promoting anti- and pro- inflammatory outcomes through the activation of IL-6 receptors and the engagement of JAK1, 2, or 3 targets along with a downstream transcription of STAT1 and 3 families (<xref ref-type="bibr" rid="ref84">Murakami et al., 2019</xref>). Consequently, there is a growing body of evidence associating IL-6, a pro-inflammatory cytokine, with the neuroinflammatory process in 22q11.2 deletion syndrome (<xref ref-type="bibr" rid="ref77">Mekori-Domachevsky et al., 2017</xref>). Furthermore, social impairment was found to be correlated with the IL-6/IL-10 ratio (<xref ref-type="bibr" rid="ref95">Ross et al., 2013</xref>). Moreover, it was concluded that a high level of Il-6 impacts the cerebellar granule cells&#x2019; histopathology and hence the functionality (<xref ref-type="bibr" rid="ref106">Wei et al., 2011</xref>). However, strong evidence was lacking to establish the causation between IL-6 and JAK1 abnormalities with autism (<xref ref-type="bibr" rid="ref102">Takeichi et al., 2022</xref>). Although promising and mechanistically relevant, these results should be extrapolated to autism research with great caution, as a pathophysiological contribution of immune and microglia deficits to ASD has yet to be unambiguously demonstrated (<xref ref-type="bibr" rid="ref29">Estes and McAllister, 2015</xref>). Therefore, this study provided evidence of the correlation between immune mechanisms with the development of ASD. The findings of this study pointed to the existence of a correlation between the levels of expression of the genes JAK1 and IL-6 and the severity of autism spectrum disorder (ASD). Therefore, further studies are required to establish the link between autoimmune products and ASD (<xref rid="fig17" ref-type="fig">Figure 17</xref>).</p>
</sec>
<sec sec-type="conclusions" id="sec72">
<label>5.</label>
<title>Conclusion</title>
<p>In conclusion, our research provides compelling evidence for the unique relationship between indomethacin-induced dysbiosis, autoimmune hepatitis (AIH), and the development of autism spectrum disorder (ASD). Dysbiosis emerged as a critical factor in the development of AIH, subsequently leading to the onset of ASD. The interconnectedness among these components, as supported by our findings, strengthens the hypothesis that the development of ASD may be linked to dysbiosis-induced autoimmune inflammatory processes. We have demonstrated that dysbiosis plays a pivotal role in the development of AIH, which subsequently contributes to the emergence of ASD. Our study revealed that intestinal dysbiosis, as evidenced by elevated serum levels of NLRP3 inflammasomes, TLR4, IL18, caspase1, along with decreased mucosal thickness and increased width between intestinal villi, is closely associated with AIH. Similarly, markers of AIH, such as elevated liver enzymes, circulating autoantibodies, JAK1, IL6, lymphocytes, and plasma cell infiltrates, were identified. Importantly, these markers exhibited a positive correlation with the severity of ASD symptoms, indicating a potential link between dysbiosis-induced autoimmune inflammatory processes and the development of ASD. The findings of our research have significant implications for early diagnosis and prognosis of ASD, particularly in children who have been exposed to non-steroidal anti-inflammatory drugs (NSAIDs) or who have AIH. The possibility of measuring the aforementioned parameters could potentially enable early identification of individuals at risk for developing ASD. Furthermore, these markers may serve as prognostic indicators, helping clinicians to anticipate the progression and severity of ASD in affected individuals. Building upon our findings, we recommend conducting a clinical trial to explore the role of probiotics in children with ASD and its impact on the measured inflammatory and autoimmune markers. Probiotics have shown promise in modulating gut microbiota and addressing dysbiosis-related conditions, and their potential benefits in the context of ASD warrant further investigation. Additionally, our study raises concerns regarding the use of NSAIDs in children. The potential association between NSAIDs, dysbiosis, AIH, and the subsequent development of ASD calls for caution in the administration of these medications to pediatric patients. This finding highlights the importance of raising awareness about the potential hazards associated with NSAID use in children and emphasizes the need for further research and regulatory considerations in this area. Overall, our study sheds light on the intricate relationship between dysbiosis, AIH, and ASD, providing a foundation for further research in this field. The identification of specific biomarkers associated with these conditions opens up new avenues for understanding their pathogenesis and developing targeted interventions. Ultimately, our findings contribute to a deeper understanding of the complex mechanisms underlying ASD and offer hope for improved diagnostic and therapeutic strategies in the future.</p>
</sec>
<sec sec-type="data-availability" id="sec73">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/supplementary material, further inquiries can be directed to the corresponding authors.</p>
</sec>
<sec sec-type="ethics-statement" id="sec74">
<title>Ethics statement</title>
<p>The studies involving humans were conducted in accordance with the Declaration of Helsinki and approved by the Institutional Review Board (or Ethics Committee) of Faculty of Medicine, Ain Shams University (FMASUR238/2023). The studies were conducted in accordance with the local legislation and institutional requirements. Written informed consent for participation in this study was provided by the participants&#x2019; legal guardians/next of kin. The animal study protocol was approved by the Institutional Review Board (or Ethics Committee) of Faculty of Medicine, Ain Shams University (FMASUR213/2023). The study was conducted in accordance with the local legislation and institutional requirements.</p>
</sec>
<sec sec-type="author-contributions" id="sec75">
<title>Author contributions</title>
<p>DM: Conceptualization, Investigation, Methodology, Project administration, Resources, Validation, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing. HHA: Data curation, Formal analysis, Methodology, Software, Validation, Visualization, Writing &#x2013; original draft. AE: Conceptualization, Investigation, Methodology, Project administration, Supervision, Visualization, Writing &#x2013; original draft. DE-W: Conceptualization, Data curation, Investigation, Methodology, Project administration, Resources, Supervision, Writing &#x2013; original draft. OE-K: Conceptualization, Investigation, Methodology, Project administration, Resources, Supervision, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing, Validation. SM: Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing &#x2013; review &#x0026; editing. YS: Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Writing &#x2013; review &#x0026; editing. RA: Data curation, Formal analysis, Funding acquisition, Investigation, Software, Validation, Visualization, Visualization. HAA: Data curation, Formal analysis, Investigation, Methodology, Resources, Software, Validation, Visualization, Writing &#x2013; review &#x0026; editing. AA: Data curation, Investigation, Software, Validation, Visualization, Writing &#x2013; review &#x0026; editing, Formal analysis, Funding acquisition, Supervision. II: Data curation, Investigation, Software, Validation, Visualization, Writing &#x2013; review &#x0026; editing, Methodology, Resources. SA: Data curation, Formal analysis, Investigation, Software, Validation, Visualization, Writing &#x2013; review &#x0026; editing, Funding acquisition. MJ: Data curation, Formal analysis, Investigation, Resources, Software, Validation, Visualization, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing, Supervision. A-HE: Formal analysis, Investigation, Methodology, Resources, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing, Data curation, Software, Validation, Visualization. ES: Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing.</p>
</sec>
</body>
<back>
<sec sec-type="funding-information" id="sec76">
<title>Funding</title>
<p>The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This research was funded by Faculty of Medicine, Ain Shams University, and Faculty of Science, Suez Canal University, Egypt. This research was also funded by Princess Nourah bint Abdulrahman University Researchers Supporting Project number (PNURSP2023R165), Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia.</p>
</sec>
<ack>
<p>The authors acknowledge the Princess Nourah bint Abdulrahman University for funding this work through the Researchers Supporting Project number (PNURSP2023R165), Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia.</p>
</ack>
<sec sec-type="COI-statement" id="sec77">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="sec100" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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