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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Cell. Infect. Microbiol.</journal-id>
<journal-title>Frontiers in Cellular and Infection Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Cell. Infect. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">2235-2988</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fcimb.2022.1105811</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Cellular and Infection Microbiology</subject>
<subj-group>
<subject>Mini Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Gastric microbiota in gastric cancer: Different roles of <italic>Helicobacter pylori</italic> and other microbes</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Guo</surname>
<given-names>Yang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1186199"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Cao</surname>
<given-names>Xue-Shan</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhou</surname>
<given-names>Meng-Ge</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/999985"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Yu</surname>
<given-names>Bo</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1880791"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Dermatology, Institute of Dermatology, Peking University Shenzhen Hospital, Shenzhen Peking University-The Hong Kong University of Science and Technology Medical Center</institution>, <addr-line>Shenzhen</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>College of Life Science and Oceanography, Shenzhen University</institution>, <addr-line>Shenzhen</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Department of Epidemiology and Biostatistics, Institute of Basic Medical Sciences Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Xin Zhou, Stanford University, United Sates</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Kai Fu, Johnson &amp; Johnson, United States; Amin Talebi Bezmin Abadi, Tarbiat Modares University, Iran</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Yang Guo, <email xlink:href="mailto:yangguoanny@163.com">yangguoanny@163.com</email>; Bo Yu, <email xlink:href="mailto:drboyu_derm@126.com">drboyu_derm@126.com</email>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Intestinal Microbiome, a section of the journal Frontiers in Cellular and Infection Microbiology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>10</day>
<month>01</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>12</volume>
<elocation-id>1105811</elocation-id>
<history>
<date date-type="received">
<day>23</day>
<month>11</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>21</day>
<month>12</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Guo, Cao, Zhou and Yu</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Guo, Cao, Zhou and Yu</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Gastric cancer (GC) is one of the leading causes of cancer-related deaths worldwide. The gastric microbiota plays a critical role in the development of GC. First, <italic>Helicobacter pylori</italic> (<italic>H. pylori</italic>) infection is considered a major risk factor for GC. However, recent studies based on microbiota sequencing technology have found that non-<italic>H. pylori</italic> microbes also exert effects on gastric carcinogenesis. Following the infection of <italic>H. pylori</italic>, gastric microbiota dysbiosis could be observed; the stomach is dominated by <italic>H. pylori</italic> and the abundances of non-<italic>H. pylori</italic> microbes reduce substantially. Additionally, decreased microbial diversity, alterations in the microbial community structure, negative interactions between <italic>H. pylori</italic> and other microbes, etc. occur, as well. With the progression of gastric lesions, the number of <italic>H. pylori</italic> decreases and the number of non-<italic>H. pylori</italic> microbes increases correspondingly. Notably, <italic>H. pylori</italic> and non-<italic>H. pylori</italic> microbes show different roles in different stages of gastric carcinogenesis. In the present mini-review, we provide an overview of the recent findings regarding the role of the gastric microbiota, including the <italic>H. pylori</italic> and non-<italic>H. pylori</italic> microbes, in the development of GC.</p>
</abstract>
<kwd-group>
<kwd>gastric cancer</kwd>
<kwd>gastric microbiota</kwd>
<kwd>
<italic>Helicobacter pylori</italic>
</kwd>
<kwd>carcinogenesis</kwd>
<kwd>dysbiosis</kwd>
</kwd-group>
<counts>
<fig-count count="1"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="66"/>
<page-count count="9"/>
<word-count count="3718"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>Gastric cancer (GC) is one of the leading causes of cancer-related deaths worldwide, ranking fifth in incidence and third in mortality of cancers (<xref ref-type="bibr" rid="B5">Bray et&#xa0;al., 2018</xref>). According to World Health Organization International Agency for Research on Cancer (WHO-IARC), the annual burden of GC will increase to approximately 1.8 million new cases and 1.3 million deaths by 2040. Compared with those in 2020, the numbers of new cases and deaths will increase by approximately 63% and 66%, respectively (<xref ref-type="bibr" rid="B43">Morgan et&#xa0;al., 2022</xref>). <italic>Helicobacter pylori</italic> (<italic>H. pylori</italic>) infection is a critical risk factor for GC (<xref ref-type="bibr" rid="B2">Amieva and Peek, 2016</xref>) and <italic>H. pylori</italic> was classified by the WHO-IARC as a type I carcinogen (<xref ref-type="bibr" rid="B60">WHO-IARC, 1994</xref>). In recent years, sequencing-based studies focusing on microbiota have shown that patients with GC have gastric microbiota dysbiosis, including reduced microbial diversity, altered microbial community structure, altered compositions, and abnormal bacterial interactions (<xref ref-type="bibr" rid="B21">Gantuya et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B30">Kadeerhan et&#xa0;al., 2021</xref>). Furthermore, non-<italic>H. pylori</italic> microbes might also promote gastric lesions and even GC (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B66">Yu et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B30">Kadeerhan et&#xa0;al., 2021</xref>). The interactions between <italic>H. pylori</italic> and other microbes may be also involved in gastric carcinogenesis.</p>
<p>In the present mini-review, we aim to discuss the recent findings regarding the role of gastric microbiota, including <italic>H. pylori</italic> and non-<italic>H. pylori</italic> microbes, in the development of GC.</p>
</sec>
<sec id="s2">
<title>
<italic>H. pylori</italic> infection, eradication, and GC</title>
<p>
<italic>H. pylori</italic> is a gram-negative, flagellated, microaerophilic bacterium belonging to the <italic>Campylobacterota</italic> phylum, which was first identified in 1982 (<xref ref-type="bibr" rid="B58">Warren and Marshall, 1983</xref>). <italic>H. pylori</italic> colonizes in the stomach and becomes the predominant microbe in stomach after infection (<xref ref-type="bibr" rid="B50">Schulz et&#xa0;al., 2018</xref>). In terms of the global epidemiology of <italic>H. pylori</italic> infection, according to a global meta-analysis (<xref ref-type="bibr" rid="B27">Hooi et&#xa0;al., 2017</xref>), there were about 4.4 billion <italic>H. pylori</italic>-positive cases worldwide in 2015. The prevalence rate of <italic>H. pylori</italic> infection varied by region, with the highest prevalence rate in Africa (70.1%, 95% CI: 62.6-77.7%) and the lowest prevalence rate in Oceania (24.4%, 95% CI: 18.5-30.4%). Furthermore, for the temporal trend of <italic>H. pylori</italic> infection, the prevalence in different regions is stable or decreasing, especially in the developed world and in children (<xref ref-type="bibr" rid="B6">Burucoa and Axon, 2017</xref>; <xref ref-type="bibr" rid="B27">Hooi et&#xa0;al., 2017</xref>).</p>
<p>
<italic>H. pylori</italic> infection is considered a major risk factor for gastric carcinogenesis. Overall, a large-scale pooled analysis of case-control studies nested within prospective cohorts showed that <italic>H. pylori</italic> infection was associated with nearly six-fold increased risk of non-cardia cancer (<xref ref-type="bibr" rid="B25">Helicobacter and Cancer Collaborative Group, 2001</xref>). The mechanism that <italic>H. pylori</italic> induces GC has been explored (<xref ref-type="bibr" rid="B29">Ishaq and Nunn, 2015</xref>; <xref ref-type="bibr" rid="B54">Talebi Bezmin Abadi, 2016</xref>). First, <italic>H. pylori</italic> primarily triggers the transition from normal mucosa to non-atrophic gastritis and then initiates precancerous lesions (<xref ref-type="bibr" rid="B13">D&#xed;az et&#xa0;al., 2018</xref>). The responses after infection are mainly mediated through the action of bacterial virulence factors, including cytotoxin-associated gene A (CagA), vacuolating cytotoxin A (VacA), and other outer membrane proteins (<xref ref-type="bibr" rid="B13">D&#xed;az et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B1">Alipour, 2021</xref>). CagA has multiple effects on epithelial cells, including stimulating cell proliferation, reducing epithelial cell apoptosis, etc. (<xref ref-type="bibr" rid="B48">Saadat et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B44">Nagy et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B7">Buti et&#xa0;al., 2011</xref>). Additionally, inflammatory cells can be recruited and oxygen species-induced damage can be induced after CagA and the type IV secretion system (T4SS) activate the inflammatory signaling (<xref ref-type="bibr" rid="B57">Viala et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B8">Chaturvedi et&#xa0;al., 2011</xref>). VacA can also cause alterations of cells, such as vacuolization and promoting immune regulation (<xref ref-type="bibr" rid="B61">Willhite et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B63">Yang et&#xa0;al., 2022</xref>). Further, the urease production by <italic>H. pylori</italic> and the glandular atrophy induced by <italic>H. pylori</italic> infection lead to reduced acid production and shifts in gastric pH value. As a result, the bacterial colonization environment in the stomach changes and gastric microbiota dysbiosis may occur (<xref ref-type="bibr" rid="B49">Schulz et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B45">Noto and Peek, 2017</xref>). The above-mentioned effects promote GC development.</p>
<p>For <italic>H. pylori</italic>-positive cases, eradication therapy could be given (<xref ref-type="bibr" rid="B17">Fallone et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B41">Malfertheiner et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B37">Liu et&#xa0;al., 2018</xref>). The effect of <italic>H. pylori</italic> eradication therapy on the GC risk has been evaluated. You et&#xa0;al. reported that, based on a randomized trial with a follow-up of 7.3 years, <italic>H. pylori</italic> treatment resulted in statistically significant decreases in the combined prevalence of severe chronic atrophic gastritis, intestinal metaplasia, dysplasia, or GC (OR = 0.77, 95% CI: 0.62-0.95) (<xref ref-type="bibr" rid="B64">You et&#xa0;al., 2006</xref>). With a follow-up of 22 years for this randomized trial, this team found that the protective effect of <italic>H pylori</italic> treatment on GC incidence (OR= 0.48, 95% CI: 0.32-0.71) and GC death (HR= 0.62, 95% CI: 0.39-0.99) persisted 22 years post-intervention (<xref ref-type="bibr" rid="B38">Li et&#xa0;al., 2019</xref>). Additionally, a recent well-designed meta-analysis enrolling randomized controlled trials (RCTs) with 10 or more years of follow-up found that the GC incidence decreased significantly with <italic>H. pylori</italic> eradication therapy (RR=0.54, 95% CI: 0.41-0.72); on the other hand, eradication of <italic>H. pylori</italic> showed significant reductions in GC mortality (RR=0.66, 95% CI: 0.46-0.95) (<xref ref-type="bibr" rid="B19">Ford et&#xa0;al., 2022</xref>).</p>
</sec>
<sec id="s3">
<title>
<italic>H. pylori</italic> associated gastric microbiota dysbiosis</title>
<p>The gastrointestinal microbiota refers to microorganisms lived in the gastrointestinal tracts, which is critical to many aspects of human health (<xref ref-type="bibr" rid="B10">Clemente et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B56">Valdes et&#xa0;al., 2018</xref>). For human immune, the microbiota is key to the induction, training, and function of the host immune system (<xref ref-type="bibr" rid="B3">Belkaid and Hand, 2014</xref>; <xref ref-type="bibr" rid="B33">Ling et&#xa0;al., 2022</xref>). Regarding the gastric microbiota, due to the high acidity of the stomach, the human stomach was once assumed to be a sterile organ (<xref ref-type="bibr" rid="B15">Espinoza et&#xa0;al., 2018</xref>). However, <italic>H. pylori</italic> is able to colonize the human gastric mucosa and survive in the highly acidic environment of the stomach (<xref ref-type="bibr" rid="B49">Schulz et&#xa0;al., 2015</xref>). With the advent of novel techniques for analyzing the microbial community, the unique features of the gastric microbiota have been identified that the major microbes in the healthy human stomach environment are <italic>Firmicutes</italic>, <italic>Bacteroidetes</italic>, <italic>Actinobacteria</italic>, <italic>Fusobacteria</italic>, and <italic>Proteobacteria</italic> (<xref ref-type="bibr" rid="B24">Guo et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B23">Guo et&#xa0;al., 2021</xref>).</p>
<p>For <italic>H. pylori</italic>-infected individuals, the stomach is dominated by <italic>H. pylori</italic> and accordingly, the abundances of non-<italic>H. pylori</italic> microbes reduce substantially (<xref ref-type="bibr" rid="B4">Brawner et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B12">Das et&#xa0;al., 2017</xref>). In addition to the changes of microbial composition, other phenomena of gastric microbiota dysbiosis have also been found. For the microbial alpha diversity, Gantuya et&#xa0;al. reported that individuals infected with <italic>H. pylori</italic> showed significant decreased microbial diversity compared with <italic>H. pylori</italic>-negative individuals (<xref ref-type="bibr" rid="B20">Gantuya et&#xa0;al., 2019</xref>). Another study found that there was a negative association between the gastric microbiome diversity and <italic>Helicobacter</italic> abundance (<xref ref-type="bibr" rid="B12">Das et&#xa0;al., 2017</xref>). In addition to microbial alpha diversity, infection with <italic>H. pylori</italic> results in alterations of the microbial community structure (beta diversity). According to a population-based study, the <italic>H. pylori</italic> positive group and negative group were clearly separated according to beta diversity (<xref ref-type="bibr" rid="B39">Llorca et&#xa0;al., 2017</xref>). Furthermore, studies focusing on the microbial ecological interactions found shifts of the interactions between <italic>H. pylori</italic> and other microbes in the stomach environment. In detail, according to an Indian study using16S rRNA gene sequencing, the network analyses showed that <italic>Helicobacter</italic> had negative interactions with other microbes of the gastric microbiome (<xref ref-type="bibr" rid="B12">Das et&#xa0;al., 2017</xref>); another Chinese study reported similar findings (<xref ref-type="bibr" rid="B24">Guo et&#xa0;al., 2020</xref>). Regarding the numbers of interactions, Coker et&#xa0;al. found that <italic>H. pylori</italic> infection reduces the number of gastric microbiome interactions (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>). However, all the above-mentioned findings were based on statistical analyses of sequencing data. Thus, we need more clinical data supporting current presented concept (<xref ref-type="bibr" rid="B47">Rivas-Ortiz et&#xa0;al., 2017</xref>).</p>
<p>For <italic>H. pylori</italic>-positive individuals, the <italic>H. pylori</italic> eradication could reverse gastric microbiota dysbiosis and exert beneficial effects on the gastric microbiota (<xref ref-type="bibr" rid="B22">Guo et&#xa0;al., 2022</xref>). Firstly, for the reduced gastric microbial diversity among <italic>H. pylori</italic>-positive cases, the diversity could increase significantly after successful eradication of <italic>H. pylori</italic> (<xref ref-type="bibr" rid="B24">Guo et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B42">Mao et&#xa0;al., 2021</xref>). Also, significant differences were observed for the microbial community structure (the beta diversity) following eradication (<xref ref-type="bibr" rid="B24">Guo et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B53">Sung et&#xa0;al., 2020b</xref>; <xref ref-type="bibr" rid="B42">Mao et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B59">Watanabe et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B65">Yuan et&#xa0;al., 2021</xref>). For the gastric microbiota composition, after removing <italic>H. pylori</italic> in the stomach environment, the gastric commonly dominant commensals are enriched (<xref ref-type="bibr" rid="B24">Guo et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B51">Shin et&#xa0;al., 2020</xref>). Different changes of specific microbes were reported, which may be resulted from different population, sequence methods, and sampling details. The common reported commensals included <italic>Firmicutes</italic>, <italic>Streptococcus, Prevotella.</italic>, etc. (<xref ref-type="bibr" rid="B26">He et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B24">Guo et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B42">Mao et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B59">Watanabe et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B65">Yuan et&#xa0;al., 2021</xref>). In terms of interactions between gastric commensal bacteria, a reduction in these interactions was reported after eradication of <italic>H. pylori</italic> (<xref ref-type="bibr" rid="B53">Sung et&#xa0;al., 2020b</xref>; <xref ref-type="bibr" rid="B65">Yuan et&#xa0;al., 2021</xref>), which were also based on statistical analyses of sequencing data and required further validation. Moreover, due to the development of bioinformatics, microbiota function could be predicted and analyzed. According to the bioinformatic analysis of functional capacity, the bacteria reproduction-related pathways are down-regulated and pathways of gastric acid secretion, etc. are up-regulated (<xref ref-type="bibr" rid="B26">He et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B24">Guo et&#xa0;al., 2020</xref>), indicating beneficial effect of eradication on the recovery of gastric microbiota. In combination with the prevention effect of <italic>H. pylori</italic> eradication on GC, the alterations in gastric microbiota after eradication may contribute to the reduction in GC risk; further studies with long-term follow-up are needed (<xref ref-type="bibr" rid="B22">Guo et&#xa0;al., 2022</xref>).</p>
</sec>
<sec id="s4">
<title>The overall features of the gastric microbiota associated with GC</title>
<p>In recent years, the characterization of the gastric microbiota associated with GC has been identified, indicating that gastric microbiota dysbiosis occur in gastric carcinogenesis (<xref ref-type="bibr" rid="B62">Yang et&#xa0;al., 2021</xref>). In the year of 2009, the team of Prof. Engstrand compared the gastric microbiota of patients with GC and controls using the terminal restriction fragment length polymorphism (T-RFLP) and 16S rRNA gene cloning and sequencing. They found that diversity indices of GC microbiota were not significantly different from that in controls according to the T-RFLP. In terms of gastric microbiota composition of GC, the abundance of <italic>H. pylori</italic> was low and the GC microbiota was dominated by the following genera: <italic>Streptococcus</italic>, <italic>Lactobacillus</italic>, <italic>Veillonella</italic> and <italic>Prevotella</italic> (<xref ref-type="bibr" rid="B14">Dicksved et&#xa0;al., 2009</xref>). However, the sample size of this study was small (only ten patients and five controls); additionally, 16S rRNA sequencing technology and related procedures are not yet developed and extensively used, therefore this work is an initial investigation of this field.</p>
<p>In following decade, other findings have been reported. Firstly, the gastric microbial diversity alteration in GC has been the most focused topic. Several studies reported that compared with the gastritis status, gastric microbial diversity is significantly reduced; analyses showed that the microbial community structure (beta diversity) is significantly altered in GC patients (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>). Similarly, according to studies based on comparison between GC tissues and non-cancerous tissues, GC tissues also have reduced diversity and shifted microbiota structure (<xref ref-type="bibr" rid="B9">Chen et&#xa0;al., 2019</xref>). However, the conclusions are inconsistent across studies. For instants, two studies showed that the alpha diversity of GC gastric microbiota was increased (<xref ref-type="bibr" rid="B16">Eun et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B34">Linz et&#xa0;al., 2017</xref>). The difference of results may be caused by different populations, sampling sites and stage of gastric disease.</p>
<p>In addition to microbial diversity analysis, with the development of bioinformatics, more in-depth analysis methods have been developed and used. The function prediction analyses have been applied to explore potential mechanisms of gastric carcinogenesis. The most studies did function prediction analyses using PICRUSt (<xref ref-type="bibr" rid="B31">Langille et&#xa0;al., 2013</xref>). Ferreira et&#xa0;al. identified the presence of a nitrosating microbial community in GC cases, indicating that nitrate-reducing bacteria may contribute to gastric carcinogenesis (<xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>). Meanwhile, a switch towards purine metabolism, D-alanine metabolism, drug metabolism, etc. in GC were reported in another study (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>). These findings suggested that the microorganisms in the stomach may contribute to the development of GC through specific functional effects. Similarly, these findings need further validation of mechanisms.</p>
</sec>
<sec id="s5">
<title>The non-<italic>H. pylori</italic> microbes associated with GC</title>
<p>In addition to <italic>H. pylori</italic>, more and more studies have been focusing on other non-<italic>H. pylori</italic> gastric microorganisms. Similar to the bacterial driver-passenger model in the development of colorectal cancer (<xref ref-type="bibr" rid="B55">Tjalsma et&#xa0;al., 2012</xref>), the hypothesis of GC has been proposed that: <italic>H. pylori</italic>, as the &#x201c;driver&#x201d;, causes pathological changes of gastric mucosa and dysbiosis of gastric microbiota; with the progression of gastric lesions, the number of <italic>H. pylori</italic> decreases and the number of other microorganisms in the stomach, i.e. non-<italic>H. pylori</italic> microbes as the &#x201c;passengers&#x201d;, increases correspondingly. These non-<italic>H. pylori</italic> microbes play an important role in the pathogenesis of GC.</p>
<p>The above hypothesis has been confirmed in animal research. An animal study using hypergastrinemic insulin-gastrin (INS-GAS) transgenic mice found that compared with the specific pathogen free (SPF) INS-GAS mice, the duration of gastric lesions development was longer for germ-free INS-GAS mice; compared with INS-GAS mice infected with <italic>H. pylori</italic> only, INS-GAS mice with complex gastric microbiota had more severe gastric lesions and an earlier onset of gastrointestinal intraepithelial neoplasia (<xref ref-type="bibr" rid="B40">Lofgren et&#xa0;al., 2011</xref>). Another INS-GAS mice-based study reported that INS-GAS mice coinfected with <italic>H. pylori</italic> and other intestinal bacteria had a higher rate of development of gastrointestinal intraepithelial neoplasia than those infected with <italic>H. pylori</italic> alone (<xref ref-type="bibr" rid="B32">Lertpiriyapong et&#xa0;al., 2014</xref>). These findings indicate the potential role of non-<italic>H. pylori</italic> microbes and the interactions between <italic>H. pylori</italic> and non-<italic>H. pylori</italic> microbes in gastric carcinogenesis.</p>
<p>More researchers are paying attention to human studies as the hypothesis is supported in animal studies. In a population-based study using the 16S rRNA gene sequencing method, compared with individuals with gastritis, GC showed gastric microbiota dysbiosis and a lower abundance of <italic>Helicobacter</italic> and the over-representation of intestinal commensals was seen in GC gastric microbiota. In detail, 16 enriched taxa and 13 depleted taxa in GC according to the LEfSe analysis (<xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>). Another study comparing gastric microbiota of GC patients and superficial gastritis reported that 21 bacterial taxa were enriched in GC and 10 bacterial taxa were depleted in GC. Specifically, enrichment of oral microbes was observed in the stomach of GC (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>). In addition to above two cross-sectional studies, a cohort study with a 4-year follow-up reported that <italic>Helicobacter</italic> abundance was lower in the subjects with progression of gastric lesions compared with non-progression group. Specifically, the remarkable decline in <italic>Helicobacter</italic> was observed after the progression to stage of dysplasia/GC compared with non-progression controls (<xref ref-type="bibr" rid="B30">Kadeerhan et&#xa0;al., 2021</xref>). The key non-<italic>H. pylori</italic> microbes associated with GC are summarized in <xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>. However, inconsistent results were found, necessitating additional validations.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Key non-<italic>H. pylori</italic> microbes associated with gastric cancer.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="left">PHYLUM</th>
<th valign="middle" align="center">CLASS</th>
<th valign="middle" align="center">ORDER</th>
<th valign="middle" align="center">FAMILY</th>
<th valign="middle" align="center">GENUS</th>
<th valign="middle" align="center">SPECIES</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" rowspan="5" align="left">
<italic>Firmicutes</italic>
</td>
<td valign="top" rowspan="4" align="left">
<italic>Bacilli</italic>
</td>
<td valign="top" rowspan="2" align="left">
<italic>Lactobacillales</italic>
</td>
<td valign="top" rowspan="2" align="left">
<italic>Streptococcacaeae</italic>
</td>
<td valign="top" align="left">
<italic>Lactococcus</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B28">Hsieh et&#xa0;al., 2018</xref>)</td>
<td valign="top" align="left">
<italic>Lactococcus lactis</italic>: potential beneficial microbes for gastric mucosa (<xref ref-type="bibr" rid="B9">Chen et&#xa0;al., 2019</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Streptococcus</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B9">Chen et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B36">Liu et&#xa0;al., 2019</xref>); also reported as potential beneficial microbes for gastric mucosa (<xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>)</td>
<td valign="top" align="left">
<italic>Streptococcus anginosus</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B36">Liu et&#xa0;al., 2019</xref>)<break/>
<italic>Streptococcus infantis</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Bacillales</italic>
</td>
<td valign="top" align="left">
<italic>Bacillaceae</italic>
</td>
<td valign="top" align="left">
<italic>Bacillus</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B30">Kadeerhan et&#xa0;al., 2021</xref>)</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">
<italic>Lactobacillales</italic>
</td>
<td valign="top" align="left">
<italic>Lactobacillaceae</italic>
</td>
<td valign="top" align="left">
<italic>Lactobacillus</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B28">Hsieh et&#xa0;al., 2018</xref>)</td>
<td valign="top" align="left">
<italic>Lactobacillus brevis</italic>: potential beneficial microbes for gastric mucosa (<xref ref-type="bibr" rid="B9">Chen et&#xa0;al., 2019</xref>)<break/>
<italic>Lactobacillus salivarius</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>)<break/>
<italic>Lactobacillus fermentum</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Clostridia</italic>
</td>
<td valign="top" align="left">
<italic>Clostridiales</italic>
</td>
<td valign="top" align="left">
<italic>Clostridiaceae</italic>
</td>
<td valign="top" align="left">
<italic>Clostridium</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B28">Hsieh et&#xa0;al., 2018</xref>)</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">
<italic>Bacteroidetes</italic>
</td>
<td valign="top" align="left">
<italic>Bacteroidetes</italic>
</td>
<td valign="top" align="left">
<italic>Bacteroidales</italic>
</td>
<td valign="top" align="left">
<italic>Prevotellaceae</italic>
</td>
<td valign="top" align="left">
<italic>Prevotella</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B9">Chen et&#xa0;al., 2019</xref>; Sung et&#xa0;al., 2020a; <xref ref-type="bibr" rid="B30">Kadeerhan et&#xa0;al., 2021</xref>); also reported as potential beneficial microbes for gastric mucosa (<xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B21">Gantuya et&#xa0;al., 2020</xref>)</td>
<td valign="top" align="left">
<italic>Prevotella melaninogenica</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B36">Liu et&#xa0;al., 2019</xref>)<break/>
<italic>Prevotella oris</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>)<break/>
<italic>Prevotella intermedia</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>Proteobacteria</italic>
</td>
<td valign="top" align="left">
<italic>Betaproteobacteria</italic>
</td>
<td valign="top" align="left">
<italic>Neisseriales</italic>
</td>
<td valign="top" align="left">
<italic>Neisseriaceae</italic>
</td>
<td valign="top" align="left">
<italic>Neisseria</italic>: potential beneficial microbes for gastric mucosa (<xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>)</td>
<td valign="top" align="left"/>
</tr>
<tr>
<td valign="top" align="left">
<italic>Fusobacteria</italic>
</td>
<td valign="top" align="left">
<italic>Fusobacteria</italic>
</td>
<td valign="top" align="left">
<italic>Fusobacterales</italic>
</td>
<td valign="top" align="left">
<italic>Fusobacteriaceae</italic>
</td>
<td valign="top" align="left">
<italic>Fusobacterium:</italic> potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B28">Hsieh et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B9">Chen et&#xa0;al., 2019</xref>)</td>
<td valign="top" align="left">
<italic>Fusobacterium nucleatum</italic>: potential harmful microbes for gastric mucosa (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>)</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Furthermore, based on the current findings, a panel of differential gastric bacteria can be developed to distinguish GC and the progression of GC with outstanding performance. A recently published meta-analysis, which enrolled six independent studies, reported that eight bacterial taxa could serve as a panel of biomarkers to discriminate GC from superficial gastritis with an area under the curve (AUC) of 0.850 (<xref ref-type="bibr" rid="B35">Liu et&#xa0;al., 2022</xref>). Regarding the progression of GC, Kadeerhan et&#xa0;al. reported a combination of four genera (<italic>Bacillus</italic>, <italic>Capnocytophaga</italic>, <italic>Helicobater</italic>, <italic>Prevotella</italic>) with age and sex to distinguish subjects after lesion progression from non-progression controls (AUC = 0.927) (<xref ref-type="bibr" rid="B30">Kadeerhan et&#xa0;al., 2021</xref>). In addition to a panel of bacteria, a new single index called Microbial Dysbiosis Index (MDI) has been presented. MDI is calculated by log (total abundance of genera increased in GC/total abundance of genera decreased in GC); a higher value of MDI means a higher risk of GC. The application of MDI has been applied in the evaluation of GC: the GC gastric microbiota had a higher MDI and the findings were confirmed in the validation cohorts (<xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>).</p>
</sec>
<sec id="s6">
<title>The different roles of <italic>H. pylori</italic> and non-<italic>H. pylori</italic> microbes in gastric carcinogenesis</title>
<p>The progression of gastric carcinogenesis is detailed in <xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>. Like bacterial driver-passenger model of colorectal cancer, the development of GC showed similar change pattern of gastric microbiota. Thus, <italic>H. pylori</italic> and non-<italic>H. pylori</italic> microbes show different roles in different stages of gastric carcinogenesis. First of all, the load of <italic>H. pylori</italic> in the stomach increases after the initial infection, especially in the active gastritis stage (<xref ref-type="bibr" rid="B52">Stewart et&#xa0;al., 2020</xref>). Interestingly, the <italic>H. pylori</italic> load decreases with the progression of gastric lesions. A population-based study showed that a lower <italic>Helicobacter</italic> abundance was observed in subjects with the progression of gastric lesions (<xref ref-type="bibr" rid="B30">Kadeerhan et&#xa0;al., 2021</xref>); another study reported that the abundance of <italic>Helicobacter</italic> was substantially lower in GC patients than gastritis (<xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>). This phenomenon could be explained that, following <italic>H. pylori</italic> infection, due to the persistence of inflammation and the loss of acid-secreting parietal cells, the gastric environment becomes more favorable for the colonization of other bacteria and progression of lesions are accelerated (<xref ref-type="bibr" rid="B46">Polk and Peek, 2010</xref>). In detail, with the development of gastric lesions, oral or intestinal commensal microbes are enriched (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B52">Stewart et&#xa0;al., 2020</xref>). However, by the late stage of gastric precancerous lesions, the stomach environment is no longer suitable for <italic>H. pylori</italic> and the abundance <italic>H. pylori</italic> of decreases. This phenomenon has been confirmed in human studies (<xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B30">Kadeerhan et&#xa0;al., 2021</xref>). The key roles of <italic>H. pylori</italic> in different stages of gastric carcinogenesis were shown in the <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>. In addition to the overall description of the progression of gastric carcinogenesis, the roles of certain bacteria remain to be clarified and further mechanism investigation is needed for a deeper understanding of this issue.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>
<italic>H. pylori</italic> and non-<italic>H. pylori</italic> microbes in the development of gastric carcinogenesis. <italic>H. pylori</italic>, <italic>Helicobacter pylori</italic>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-12-1105811-g001.tif"/>
</fig>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Key roles of <italic>H. pylori</italic> in gastric carcinogenesis.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="left">Stages in the development of GC</th>
<th valign="middle" align="center">Descriptions</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Uninfected stage</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>The major microbes in the healthy human stomach environment are <italic>Firmicutes</italic>, <italic>Bacteroidetes</italic>, <italic>Actinobacteria</italic>, <italic>Fusobacteria</italic>, and <italic>Proteobacteria</italic> (<xref ref-type="bibr" rid="B24">Guo et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B23">Guo et&#xa0;al., 2021</xref>)</p>
</list-item>
<list-item>
<p>The abundance of <italic>H. pylori</italic> in the gastric microbiota of uninfected status is low (<xref ref-type="bibr" rid="B24">Guo et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B23">Guo et&#xa0;al., 2021</xref>).</p>
</list-item>
</list>
</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>H. pylori</italic>-dependent stage</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>
<italic>H. pylori</italic>, as the &#x201c;driver&#x201d;, causes pathological changes of gastric mucosa and dysbiosis of gastric microbiota.</p>
</list-item>
<list-item>
<p>After <italic>H. pylori</italic> infection, the stomach is dominated by <italic>H. pylori</italic> and accordingly, the abundances of non-<italic>H.pylori</italic> gastric commensals reduce substantially (<xref ref-type="bibr" rid="B4">Brawner et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B12">Das et&#xa0;al., 2017</xref>).</p>
</list-item>
<list-item>
<p>
<italic>H. pylori</italic> associated gastric microbiota dysbiosis includes: decreased microbial diversity, alterations in the microbial community structure, negative interactions between <italic>H. pylori</italic> and other microbes, etc. (<xref ref-type="bibr" rid="B12">Das et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B39">Llorca et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B20">Gantuya et&#xa0;al., 2019</xref>).</p>
</list-item>
</list>
</td>
</tr>
<tr>
<td valign="top" align="left">
<italic>H. pylori</italic>-independent stage</td>
<td valign="top" align="left">
<list list-type="bullet">
<list-item>
<p>With the progression of gastric lesions, the number of <italic>H. pylori</italic> decreases and the number of non-<italic>H. pylori</italic> microbes, as the &#x201c;passengers&#x201d;, increases correspondingly.</p>
</list-item>
<list-item>
<p>The &#x201c;passengers&#x201d; are considered oral or intestinal commensal microbes (<xref ref-type="bibr" rid="B11">Coker et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B18">Ferreira et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B52">Stewart et&#xa0;al., 2020</xref>).</p>
</list-item>
</list>
</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s7">
<title>Future perspectives</title>
<p>Non-<italic>H. pylori</italic> microbes and their interactions may also play a critical role in the development of GC. However, inconsistent findings were reported for non-<italic>H. pylori</italic> microbes associated with GC. Accordingly, further mechanism investigation is needed to validate these potential GC-associated non-<italic>H. pylori</italic> microbes, such as animal studies. Additionally, most human studies are case-control studies, which compared gastric microbiota of gastric mucosa between GC patients and control population. Due to this study design, we cannot infer a causal relationship between gastric microbiota dysbiosis and development and progression of GC. In other words, it is unclear whether gastric microbiota dysbiosis causes GC or whether GC causes gastric microbiota dysbiosis. Therefore, cohort studies with long-term follow-up are needed to confirm the major findings.</p>
</sec>
<sec id="s8" sec-type="author-contributions">
<title>Author contributions</title>
<p>YG drafted the manuscript, conceptualized the idea, and revised the manuscript. X-SC and M-GZ performed the literature search and revised the manuscript. YG and M-GZ contributed to drawing the figure. BY critically revised the manuscript and supervised the study. All authors contributed to the article and approved the submitted version.</p>
</sec>
</body>
<back>
<sec id="s9" sec-type="funding-information">
<title>Funding</title>
<p>This work was supported by the National Natural Science Foundation of China (No. 82103727), the fellowship of China Postdoctoral Science Foundation (No. 2021M702221), Guangdong Basic and Applied Basic Research Foundation (No. 2022A1515010957 and 2021A1515011558), Shenzhen Sanming Project (No. SZSM201812059), Shenzhen Key Medical Discipline Construction Fund (No. SZXK040), Shenzhen Science and Technology Program (No. RCBS20210706092408008).</p>
</sec>
<sec id="s10" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s11" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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