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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Cell. Infect. Microbiol.</journal-id>
<journal-title>Frontiers in Cellular and Infection Microbiology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Cell. Infect. Microbiol.</abbrev-journal-title>
<issn pub-type="epub">2235-2988</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/fcimb.2021.769671</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Cellular and Infection Microbiology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Multilocus Sequence Typing of Non-JP2 Serotype b <italic>Aggregatibacter actinomycetemcomitans</italic> Strains of Ghanaian and Swedish Origin</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Claesson</surname>
<given-names>Rolf</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Johansson</surname>
<given-names>Anders</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/859730"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>H&#xf6;glund &#xc5;berg</surname>
<given-names>Carola</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Esberg</surname>
<given-names>Anders</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1152498"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Haubek</surname>
<given-names>Dorte</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/76990"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Oscarsson</surname>
<given-names>Jan</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1461613"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Division of Oral Microbiology, Department of Odontology, Ume&#xe5; University</institution>, <addr-line>Ume&#xe5;</addr-line>, <country>Sweden</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Division of Molecular Periodontology, Department of Odontology, Ume&#xe5; University</institution>, <addr-line>Ume&#xe5;</addr-line>, <country>Sweden</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Department of Odontology, Ume&#xe5; University</institution>, <addr-line>Ume&#xe5;</addr-line>, <country>Sweden</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Section for Paediatric Dentistry, Department of Dentistry and Oral Health, Aarhus University</institution>, <addr-line>Aarhus</addr-line>, <country>Denmark</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Gunnar Dahlen, University of Gothenburg, Sweden</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Senthil Kumar Velusamy, Rutgers Biomedical and Health Sciences, United States; Jaroslav Hrabak, Charles University, Czechia</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Jan Oscarsson, <email xlink:href="mailto:jan.oscarsson@umu.se">jan.oscarsson@umu.se</email> </p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Clinical Microbiology, a section of the journal Frontiers in Cellular and Infection Microbiology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>14</day>
<month>12</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>11</volume>
<elocation-id>769671</elocation-id>
<history>
<date date-type="received">
<day>02</day>
<month>09</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>26</day>
<month>11</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2021 Claesson, Johansson, H&#xf6;glund &#xc5;berg, Esberg, Haubek and Oscarsson</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Claesson, Johansson, H&#xf6;glund &#xc5;berg, Esberg, Haubek and Oscarsson</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Objective and Methods</title>
<p>The Gram-negative bacterium, <italic>Aggregatibacter actinomycetemcomitans</italic> is associated with periodontitis affecting young individuals. The geographic dissemination of the highly leukotoxic JP2 genotype of serotype b of this species was previously studied by multilocus sequence typing (MLST). Here, we have used MLST to genetically characterize non-JP2 genotype strains of serotype b, isolated from individuals living in Ghana (n=41), and in Sweden (n=13), respectively.</p>
</sec>
<sec>
<title>Results</title>
<p>The MLST analysis revealed a total of nine sequence types (ST). Both Ghanaian and Swedish isolates were distributed in ST 1-3. ST 5 and 6 were only identified among the Ghanaian strains, whereas ST 4, 7, 8 and 9 were uniquely represented among the Swedish strains. Previously, we characterized these non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> serotype b by arbitrarily-primed (AP)-PCR, which distributed them into three groups, AP-PCR type 1, 2, and 3, respectively. AP-PCR type 1 strains are generally highly leukotoxic, and are associated with progression of periodontal attachment loss. As AP-PCR type 1 includes both JP2 genotype strains and a proportion of non-JP2 genotype strains of serotype b, a straightforward diagnostic procedure has been sought. This has revealed a gene, <italic>cagE</italic>, which appears to be conserved only in this AP-PCR type. According to our results, MLST was not a highly discriminatory method to identify AP-PCR type 1, as strains of this AP-PCR type could be found within three different ST: ST 2, ST 3 and ST 8.</p>
</sec>
<sec>
<title>Conclusion</title>
<p>According to MLST, a geographic dissemination of non-JP2 genotype <italic>A. actinomycetemcomitans</italic> serotype b appears to exist. However, aiming to identify carriers of AP-PCR type 1, non-JP2 genotype serotype b, PCR with <italic>cagE</italic>-specific primers is likely the most efficient diagnostic procedure known today.</p>
</sec>
</abstract>
<kwd-group>
<kwd>
<italic>Aggregatibacter actinomycetemcomitans</italic>
</kwd>
<kwd>multilocus sequence typing (MLST)</kwd>
<kwd>non-JP2</kwd>
<kwd>serotype b</kwd>
<kwd>
<italic>cagE</italic>
</kwd>
<kwd>evolutionary analysis</kwd>
<kwd>genomic analysis</kwd>
</kwd-group>
<counts>
<fig-count count="2"/>
<table-count count="3"/>
<equation-count count="0"/>
<ref-count count="38"/>
<page-count count="8"/>
<word-count count="4422"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>
<italic>Aggregatibacter actinomycetemcomitans</italic> produces a toxin, which associates this bacterium with periodontitis affecting young individuals (<xref ref-type="bibr" rid="B15">Haubek et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B18">Henderson et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B27">K&#xf6;n&#xf6;nen and Muller, 2014</xref>; <xref ref-type="bibr" rid="B12">Fine et&#xa0;al., 2020</xref>). Since the toxin causes lethal effects on leukocytes of different types, it is considered a leukotoxin (LtxA). The production and release of LtxA is affected by alterations in the promoter region of the <italic>ltxCABD</italic> operon (<xref ref-type="bibr" rid="B26">Kolodrubetz et&#xa0;al., 1989</xref>; <xref ref-type="bibr" rid="B31">Spitznagel et&#xa0;al., 1991</xref>). Of the seven serotypes of <italic>A. actinomycetemcomitans</italic> (a-g), a specific variant of serotype b has a deletion of 530 base pairs (bp) in the promoter region (<xref ref-type="bibr" rid="B4">Brogan et&#xa0;al., 1994</xref>). This variant is genetically different from those having a full-length promoter, and is since long referred to as the JP2 genotype (<xref ref-type="bibr" rid="B14">Haubek, 2010</xref>). As a consequence, all variants of <italic>A. actinomycetemcomitans</italic> with a full-length leukotoxin gene promoter are typically referred to as non-JP2 genotype. In serotype b strains, also additional <italic>ltxCABD</italic> promoter types have been identified, with either deletions of alternative regions of the promoter, or with insertions in it (<xref ref-type="bibr" rid="B19">He et&#xa0;al., 1999</xref>; <xref ref-type="bibr" rid="B8">Claesson et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B7">Claesson et&#xa0;al., 2020</xref>).</p>
<p>The JP2 genotype of <italic>A. actinomycetemcomitans</italic> serotype b is highly leukotoxic (<xref ref-type="bibr" rid="B34">Tsai et&#xa0;al., 2018</xref>), and carriers of this specific type are at substantial risk for rapid loss of tooth-supporting tissues, including alveolar bone (<xref ref-type="bibr" rid="B5">Bueno et&#xa0;al., 1998</xref>; <xref ref-type="bibr" rid="B13">Haraszthy et&#xa0;al., 2000</xref>; <xref ref-type="bibr" rid="B15">Haubek et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B6">Burgess et&#xa0;al., 2017</xref>). While the JP2 genotype appears to be distributed only in serotype b of <italic>A.&#xa0;actinomycetemcomitans</italic>, the non-JP2 genotype is found among all serotypes (a-g). Non-JP2 genotype strains of <italic>A.&#xa0;actinomycetemcomitans</italic> are generally low-leukotoxic. However,&#xa0;a subgroup of non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> serotype b that exhibit high leukotoxicity, and has enhanced association with periodontal disease progression, has been identified (<xref ref-type="bibr" rid="B1">Asikainen et&#xa0;al., 1995</xref>; <xref ref-type="bibr" rid="B20">H&#xf6;glund &#xc5;berg et&#xa0;al., 2014</xref>).</p>
<p>In addition to leukotoxin promoter typing, <italic>A. actinomycetemcomitans</italic> strains have been genotypically characterized by a range of other DNA-based methods (<xref ref-type="bibr" rid="B2">Asikainen and Karched, 2008</xref>; <xref ref-type="bibr" rid="B25">Kittichotirat et&#xa0;al., 2016</xref>). One of them is arbitrarily-primed (AP)-PCR (<xref ref-type="bibr" rid="B37">van Belkum, 1994</xref>), which has revealed that all hitherto tested JP2 genotype strains belong to the same AP-PCR banding pattern group (AP-PCR type 1), whereas for non-JP2 strains a number of different AP-PCR types have been identified (<xref ref-type="bibr" rid="B20">H&#xf6;glund &#xc5;berg et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B9">Claesson et&#xa0;al., 2017</xref>). Interestingly, a subgroup of non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> serotype b that expresses enhanced levels of LtxA also belongs to AP-PCR type 1, and hence appears to be genetically related to the JP2 genotype of <italic>A. actinomycetemcomitans</italic> (<xref ref-type="bibr" rid="B20">H&#xf6;glund &#xc5;berg et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B23">Johansson et&#xa0;al., 2017</xref>). Moreover, all hitherto assessed <italic>A. actinomycetemcomitans</italic> strains of serotype b belonging to AP-PCR type 1 have the property in common that they carry the gene <italic>cagE</italic>, which with very few exceptions appears to be present in this AP-PCR type only, and as the gene is absent in the other <italic>A. actinomycetemcomitans</italic> serotypes, it could be used for diagnostic purposes (<xref ref-type="bibr" rid="B23">Johansson et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B22">Johansson et&#xa0;al., 2019</xref>).</p>
<p>AP-PCR characterization mirrors genetic variability within bacterial species without requiring the analysis of specific genes, whereas Multilocus Sequence Typing (MLST) is a molecular typing method that is used to characterize bacterial strains in terms of pathogenicity and dissemination (<xref ref-type="bibr" rid="B11">Dogan et&#xa0;al., 1999b</xref>; <xref ref-type="bibr" rid="B17">Haubek et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B24">Jolley and Maiden, 2014</xref>). This is a highly discriminatory typing method based on sequencing of a number of housekeeping genes. MLST of bacterial strains renders so called sequence types (ST), which can be further used in dissemination studies. As judged by the MLST-based characterization, the JP2 genotype of serotype b emerged from the Mediterranean part of Africa about 2400 years ago, and has then subsequently been spread worldwide (<xref ref-type="bibr" rid="B17">Haubek et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B30">Rylev and Kilian, 2008</xref>).</p>
<p>In the present study, we have carried out MLST-characterization of non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> serotype b from two of our clinical collections, isolated from individuals living in Ghana and Sweden, respectively (<xref ref-type="bibr" rid="B21">H&#xf6;glund &#xc5;berg et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B9">Claesson et&#xa0;al., 2017</xref>). Thereby, we have been able to compare the genetic variability of non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> serotype b collected from carriers living in two from each other separated continents, to assess if geographic dissemination of such strains may exist. In addition, our aim was to study whether any correlation could&#xa0;be observed between AP-PCR/<italic>cagE</italic> genotype and MLST&#x2013;based sequence types of non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> serotype b. To this end, the MLST pattern of each strain was compared with their genetic discrepancies earlier revealed by AP-PCR and <italic>cagE</italic> genotyping (<xref ref-type="bibr" rid="B20">H&#xf6;glund &#xc5;berg et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B9">Claesson et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B23">Johansson et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B22">Johansson et&#xa0;al., 2019</xref>).</p>
</sec>
<sec id="s2" sec-type="materials|methods">
<title>Materials and Methods</title>
<sec id="s2_1">
<title>
<italic>A. actinomycetemcomitans</italic> Strain Collections</title>
<p>A list of all strains used in this work is presented as <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material</bold>
</xref> (<xref ref-type="supplementary-material" rid="SM1">
<bold>Table S1</bold>
</xref>). A total of 56 non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> serotype b, collected and isolated from subgingival plaque samples, were used in this work. These included 41 collected from adolescents in a Ghanaian (Gh) study cohort (<xref ref-type="bibr" rid="B21">H&#xf6;glund &#xc5;berg et&#xa0;al., 2012</xref>), 13 sampled from patients living in Sweden (Sw), and recruited to specialist periodontal treatment (<xref ref-type="bibr" rid="B9">Claesson et&#xa0;al., 2017</xref>), and two reference strains named HK908, and HK912. For all strains used in this work, AP-PCR and <italic>cagE</italic> genotype have earlier been examined, respectively (<xref ref-type="bibr" rid="B20">H&#xf6;glund &#xc5;berg et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B9">Claesson et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B23">Johansson et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B22">Johansson et&#xa0;al., 2019</xref>). The 56 strains were grouped into AP-PCR type 1 (n=18, all <italic>cagE</italic>-positive), AP-PCR type 2 (n=16; all <italic>cagE</italic>-negative), and AP-PCR type 3 (n=21; 20 <italic>cagE</italic>-negative). The latter AP-PCR type actually includes AP-PCR types 3 to 11, as defined earlier (<xref ref-type="bibr" rid="B9">Claesson et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B22">Johansson et&#xa0;al., 2019</xref>). One strain, Gh 26 (<italic>cagE</italic>-negative), was non-typeable by AP-PCR. Of the strains&#xa0;isolated in Ghana, 15 are AP-PCR type 1, 13 type 2, and 12 type 3. Of the strains isolated in Sweden, two are AP-PCR type 1, two&#xa0;are type 2 and nine type 3. Moreover, <italic>A. actinomycetemcomitans</italic> strains HK908 (AP-PCR type 2), originally referred to as non-serotypeable (<xref ref-type="bibr" rid="B17">Haubek et&#xa0;al., 2007</xref>), but later confirmed as serotype b (<xref ref-type="bibr" rid="B23">Johansson et&#xa0;al., 2017</xref>), and HK912 (AP-PCR type 1; serotype b) (<xref ref-type="bibr" rid="B17">Haubek et&#xa0;al., 2007</xref>) were used as references. All strains were cultured on blood agar plates (5% defibrinated horse blood, 5 mg hemin/L, 10 mg vitamin K/L, Columbia agar base) and incubated in air supplemented with 5% CO<sub>2</sub>, at 37&#xb0;C.</p>
</sec>
<sec id="s2_2">
<title>Multilocus Sequence Typing (MLST) and Evolutionary Analyses</title>
<p>The gene fragments used for MLST in this study were originally selected from the <italic>A. actinomycetemcomitans</italic> serotype b, JP2 genotype strain, named HK1651 (<xref ref-type="bibr" rid="B16">Haubek et&#xa0;al., 2006</xref>), which were utilized for the analysis of JP2 genotype strains (<xref ref-type="bibr" rid="B17">Haubek et&#xa0;al., 2007</xref>). In the present study, fragments of genes encoding four housekeeping enzymes were selected for MLST: <italic>recA</italic> (GenBank accession EF142768) encoding the RecA protein, <italic>adk</italic> (EF142164) encoding adenylate kinase, <italic>frdB</italic> (EF142336) encoding fumarate reductase, and <italic>atpG</italic> (EF142218) encoding the gamma subunit of ATP synthase F1. In addition, two fragments of the hemoglobin-binding protein pseudogene <italic>hbpA</italic> (<italic>hbpA-1</italic>, and <italic>hbpA-2</italic>; EF142408 and EF142489), and one fragment of the transferring-binding protein pseudogene, <italic>tbpA</italic> (EF142817). Templates for PCR were obtained by boiling a loopful of <italic>A. actinomycetemcomitans</italic> colonies in water. PCR amplification and DNA sequencing were performed as previously described (<xref ref-type="bibr" rid="B17">Haubek et&#xa0;al., 2007</xref>). The MLST sequence types (ST) of the 56 non-JP2 genotype strains were defined based on single nucleotide polymorphisms (SNPs) within the seven DNA fragments. A cluster analysis of the 56 <italic>A. actinomycetemcomitans</italic> strains was performed based on the concatenated sequences of the seven DNA fragments in the order <italic>adk, atpG, frdB, recA, hbpA</italic>-<italic>1, hbpA</italic>-<italic>2, and tbpA</italic>. Evolutionary analyses were conducted by using the Minimum Evolution algorithm in MEGA, version 7.21 (<xref ref-type="bibr" rid="B33">Tamura et&#xa0;al., 2013</xref>). A total of 3176 nucleotide positions were used in the final dataset.</p>
</sec>
<sec id="s2_3">
<title>Ethical Considerations</title>
<p>Ethical clearance for this work was obtained from the Noguchi Memorial Institute for Medical Research, University of Ghana (IRB 000 1276), and from the local ethical committee of Ume&#xe5; University, Sweden (Dnr 2010-188-31M).</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<title>Results</title>
<sec id="s3_1">
<title>Identification of Polymorphic Sites and SNPs</title>
<p>The MLST analysis of a total of 56 non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> serotype b, including the reference strains HK908 and HK912, was based on four house-keeping genes and three additional gene fragments, as described in Materials and Methods. When using the JP2 genotype strain, HK1651 as a reference for the comparisons, 14 polymorphic sites could be identified (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). However, four polymorphic sites, located in the <italic>atpG</italic> (at nucleotide [nt] position 231), <italic>hbpA-1</italic> (at nt 44), and in the <italic>hbpA-2</italic> (at nt 6 and nt 214) gene fragments, respectively, were unique for HK1651, and there was no variation among the 56 non-JP2 genotype strains at these sites. In these strains, on the other hand, six polymorphic sites were identified in one strain each: <italic>adk</italic> (at nt 107), <italic>atpG</italic> (at nt 459 and 479), <italic>frdB</italic> (at nt 143), <italic>recA</italic> (at nt 111), and <italic>hbpA-2</italic> (at nt 123). In all of the 56 non-JP2 genotype strains, a total of 290 SNPs were detected at the ten polymorphic sites, representing &#x2248;0.1% of the total number of nucleotides of the sequenced gene fragments.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>The polymorphic sites of the nine sequence types (ST) identified by MLST analysis of 56 non-JP2 genotype, serotype b <italic>A. actinomycetemcomitans</italic> strains.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">ST</th>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
</tr>
<tr>
<th valign="top" align="left"/>
<th valign="top" align="center"/>
<th valign="top" align="center">Gh</th>
<th valign="top" align="center">Sw</th>
<th valign="top" align="center">Ref</th>
<th valign="top" align="center">
<italic>adk</italic>
</th>
<th valign="top" align="center">
<italic>atpG</italic>
</th>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center">
<italic>frdB</italic>
</th>
<th valign="top" align="center"/>
<th valign="top" align="center">
<italic>recA</italic>
</th>
<th valign="top" align="center">
<italic>hbpA-1</italic>
</th>
<th valign="top" align="center"/>
<th valign="top" align="center">
<italic>hbpA-2</italic>
</th>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center">
<italic>tbpA</italic>
</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">lenght (bp)</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">559</td>
<td valign="top" align="center">500</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">510</td>
<td valign="top" align="center"/>
<td valign="top" align="center">495</td>
<td valign="top" align="center">439</td>
<td valign="top" align="center"/>
<td valign="top" align="center">329</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">344</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">position</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">107</td>
<td valign="top" align="center">231</td>
<td valign="top" align="center">318</td>
<td valign="top" align="center">459</td>
<td valign="top" align="center">479</td>
<td valign="top" align="center">143</td>
<td valign="top" align="center">272</td>
<td valign="top" align="center">111</td>
<td valign="top" align="center">44</td>
<td valign="top" align="center">307</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">123</td>
<td valign="top" align="center">214</td>
<td valign="top" align="center">56</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left">1</td>
<td valign="top" align="left"/>
<td valign="top" align="center">13</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>C</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">
<bold>T</bold>
</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">-</td>
</tr>
<tr>
<td valign="top" align="left">2</td>
<td valign="top" align="left"/>
<td valign="top" align="center">21</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">1(a)</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>C</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">-</td>
</tr>
<tr>
<td valign="top" align="left">3</td>
<td valign="top" align="left"/>
<td valign="top" align="center">5</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">1(b)</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>C</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">A</td>
</tr>
<tr>
<td valign="top" align="left">4</td>
<td valign="top" align="left"/>
<td valign="top" align="center"/>
<td valign="top" align="center">2</td>
<td valign="top" align="center"/>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>C</bold>
</td>
<td valign="top" align="center">
<bold>A</bold>
</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">A</td>
</tr>
<tr>
<td valign="top" align="left">5</td>
<td valign="top" align="left"/>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>C</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">
<bold>A</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">-</td>
</tr>
<tr>
<td valign="top" align="left">6</td>
<td valign="top" align="left"/>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>C</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">
<bold>T</bold>
</td>
<td valign="top" align="center">
<bold>T</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">A</td>
</tr>
<tr>
<td valign="top" align="left">7</td>
<td valign="top" align="left"/>
<td valign="top" align="center"/>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>C</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">
<bold>T</bold>
</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">A</td>
</tr>
<tr>
<td valign="top" align="left">8</td>
<td valign="top" align="left"/>
<td valign="top" align="center"/>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>C</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">
<bold>A</bold>
</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">-</td>
</tr>
<tr>
<td valign="top" align="left">9</td>
<td valign="top" align="left"/>
<td valign="top" align="center"/>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center">
<bold>T</bold>
</td>
<td valign="top" align="center">
<bold>C</bold>
</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">G</td>
<td valign="top" align="center">
<bold>T</bold>
</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">C</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">
<bold>T</bold>
</td>
<td valign="top" align="center">
<bold>G</bold>
</td>
<td valign="top" align="center">A</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left"/>
<td valign="top" align="center">41</td>
<td valign="top" align="center">13</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left">HK1651</td>
<td valign="top" align="left"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">
<italic>C</italic>
</td>
<td valign="top" align="center">
<italic>G</italic>
</td>
<td valign="top" align="center">
<italic>G</italic>
</td>
<td valign="top" align="center">
<italic>C</italic>
</td>
<td valign="top" align="center">
<italic>G</italic>
</td>
<td valign="top" align="center">
<italic>G</italic>
</td>
<td valign="top" align="center">
<italic>G</italic>
</td>
<td valign="top" align="center">
<italic>C</italic>
</td>
<td valign="top" align="center">
<italic>T</italic>
</td>
<td valign="top" align="center">
<italic>C</italic>
</td>
<td valign="top" align="center">
<italic>T</italic>
</td>
<td valign="top" align="center">
<italic>G</italic>
</td>
<td valign="top" align="center">
<italic>A</italic>
</td>
<td valign="top" align="center">
<italic>A</italic>
</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Indicated are the polymorphic sites identified in the gene fragments adk, atpG, frdB, recA, hbpA-1, hbpA-2 and tbpA, which were used for MLST analysis 56 non-JP2 serotype b strains of Ghanaian (Gh) and Swedish (Sw) origin, respectively. The reference non-JP2 serotype b strains (Ref; HK912 [a], and HK908 [b]) are also included in the table. For comparison, the polymorphic sites of A. actinomycetemcomitans strain, HK1651 a JP2 genotype reference strain (<xref ref-type="bibr" rid="B16">Haubek et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B17">Haubek et&#xa0;al., 2007</xref>), is included in the table. Bold letters in the table show nucleotides that are distinguished from HK1651.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_2">
<title>Identification of Sequence Types</title>
<p>Based on the MLST scheme used, nine sequence types (ST) could be identified among the 56 non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> serotype b, and which in this work were denoted ST 1 to ST 9 (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). The two non-JP2 genotype serotype b reference strains, HK908 and HK912, were confirmed to belong to ST 3 and ST 2, respectively. The overall most common sequence types among the 56 strains were ST 1 (25%), and ST 2 (46.3%). The number of SNPs among the different ST varied between four and seven (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>).</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Sequence types (ST) of the 56 non-JP2 serotype b <italic>A. actinomycetemcomitans</italic> strains.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">ST</th>
<th valign="top" align="center">1</th>
<th valign="top" align="center">2</th>
<th valign="top" align="center">3</th>
<th valign="top" align="center">4</th>
<th valign="top" align="center">5</th>
<th valign="top" align="center">6</th>
<th valign="top" align="center">7</th>
<th valign="top" align="center">8</th>
<th valign="top" align="center">9</th>
<th valign="top" align="center">n</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">Gh</td>
<td valign="top" align="center">13</td>
<td valign="top" align="center">21</td>
<td valign="top" align="center">5</td>
<td valign="top" align="center"/>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">41</td>
</tr>
<tr>
<td valign="top" align="left">Sw</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">4</td>
<td valign="top" align="center">3</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">13</td>
</tr>
<tr>
<td valign="top" align="left">Ref</td>
<td valign="top" align="center"/>
<td valign="top" align="center">1(a)</td>
<td valign="top" align="center">1(b)</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">2</td>
</tr>
<tr>
<td valign="top" align="left">Total</td>
<td valign="top" align="center">14</td>
<td valign="top" align="center">26</td>
<td valign="top" align="center">9</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">56</td>
</tr>
<tr>
<td valign="top" align="left">%</td>
<td valign="top" align="center">25</td>
<td valign="top" align="center">46.3</td>
<td valign="top" align="center">16.1</td>
<td valign="top" align="center">3.6</td>
<td valign="top" align="center">1.8</td>
<td valign="top" align="center">1.8</td>
<td valign="top" align="center">1.8</td>
<td valign="top" align="center">1.8</td>
<td valign="top" align="center">1.8</td>
<td valign="top" align="center">100</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>The numbers of Ghanaian (Gh), and Swedish (Sw) serotype b A. actinomycetemcomitans non-JP2 genotype strains distributed according to the nine detected sequence types (ST 1 to 9), and the proportions of the different ST are indicated. The reference strains (Ref; HK912 [a], and HK908 [b]) are also included in the table.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_3">
<title>Distribution of Sequence Types Among the Strains Isolated in Ghana and Sweden and Cluster Analysis</title>
<p>As indicated in <xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>, a large portion of the non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> of serotype b isolated in Ghana and Sweden, respectively, were distributed in ST 1 to 3, which were the only sequence types identified in both countries. This supports that geographic dissemination of the non-JP2 genotype of <italic>A. actinomycetemcomitans</italic> serotype b may exist. In both collections of non-JP2 genotype serotype b strains, ST2 was the most common, representing 51.2% of the Ghanaian and 30.8% of the Swedish strains, respectively. The second most frequent sequence type, ST 1, was more common among the strains of Ghanaian (n=13) relative to those of Swedish origin (n=1). Moreover, whereas ST 5 and 6 were only identified among the Ghanaian strains, ST 4, 7, 8, and 9 were unique for the strains isolated in Sweden (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>). Two major clusters could be identified based on the presence and absence of a deletion of an &#x201c;A&#x201d; at nt position 56 in <italic>tbpA</italic>, respectively (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). The cluster lacking this deletion, referred to as cluster A, contained 14 strains, which were distributed in ST 3, 4, 6, 7, and 9. Cluster B contained 42 strains with the deletion in <italic>tbpA</italic>, i.e., these strains exhibited a deleted &#x201c;A&#x201d; at nt position 56 in <italic>tbpA</italic> (ST 1, 2, 5 and 8). Among the 41 Ghanaian strains, 35 (85%) were distributed in cluster B, consistent with a rather homogeneous population of non-JP2 genotype strains of serotype b. In contrast, the strains of Swedish origin appeared to be more heterogeneous, with seven (54%) belonging to cluster A, and the remaining 6 (46%) to cluster&#xa0;B. This difference may reflect that there is a diversity in the genetic composition between the strains of Ghanaian and Swedish&#xa0;origin. However, as shown in the phylogenetic tree (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2</bold>
</xref>), cluster analysis, using the seven concatenated gene sequences revealed a close genetic relationship between essentially all 56 strains regardless of country of origin. We observed though that all 14 ST 1 strains in cluster B were represented in a separate monophyletic branch, and that strain Sw 10 (ST 9) appeared more distantly related.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>Schematic illustration of the separation of 56 non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic>, serotype b strains into two clusters by MLST. Cluster A (blue background), and B (yellow), respectively, were separated based on the nine identified sequence types (ST 1-9). The numbers and proportions of each ST out of the 56 strains are indicated. All ST distributed into Cluster B carry the deletion of an &#x201c;A&#x201d; at nucleotide position 56 in <italic>tbpA</italic> (tbpA 56 &gt;-). The AP-PCR-type (1-3, or non-typeable [nt]) is indicated within parentheses for each strain. Gh, Ghanaian strains; Sw, strains of Swedish origin. The reference strains HK908 and HK912 are included in the diagram.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-11-769671-g001.tif"/>
</fig>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Phylogenetic relationship of 56 non-JP2 genotype <italic>A.&#xa0;actinomycetemcomitans</italic> strains of serotype b, based on MLST. The&#xa0;phylogenetic tree with the highest log likelihood is shown. The percentages of trees, in which the associated strains clustered together, is shown next to the branches. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. The bar indicates genetic distance. GH, Ghanaian strains; SW, Swedish strains.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="fcimb-11-769671-g002.tif"/>
</fig>
</sec>
<sec id="s3_4">
<title>Correlation Between MLST-Based Sequence Types and AP-PCR Genotype</title>
<p>The 56 non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic>, serotype b strains were earlier assessed by AP-PCR, and were distributed into AP-PCR types 1, 2 and 3, as described in Materials and Methods. The AP-PCR type of each of the nine MLST-based ST found among the Ghanaian and Swedish strains together, including the reference strains HK908 and HK912, is indicated in <xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>. Among the 18 AP-PCR type 1 (and <italic>cagE<sup>+</sup>
</italic>) strains, a large majority, i.e., 14 (77.8%) were found to belong to ST 2. However, ST 2 did not exhibit any unique SNP at the ten polymorphic sites (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). Of the 16 AP-PCR type 2 strains, the majority (12; 75%) belonged to ST 1. Thus, the polymorphic site at nt 307 in <italic>hbpA-1</italic> (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>), unique for ST 1 strains, could be considered rather strongly associated with AP-PCR type 2. The 21 AP-PCR type 3 strains, were as expected a less homogeneous group, and were distributed into ST 1, 2, 3, 4, 6, 7, and 9. Based on these observations together, we could conclude that the AP-PCR genotypes to some extent do cluster into specific MLST-defined ST, but that <italic>cagE</italic>-genotyping presently appears to be a stronger, and more easily implemented tool to diagnose carriage of virulent non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> serotype b.</p>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>AP-PCR types of the 56 non-JP2 serotype b <italic>A. actinomycetemcomitans</italic> strains.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">ST</th>
<th valign="top" align="center">Sw</th>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center">Gh</th>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
<th valign="top" align="center">Ref</th>
<th valign="top" align="center"/>
<th valign="top" align="center"/>
</tr>
<tr>
<th valign="top" align="left"/>
<th valign="top" align="center"/>
<th valign="top" align="center">AP1</th>
<th valign="top" align="center">AP2</th>
<th valign="top" align="center">AP3</th>
<th valign="top" align="center"/>
<th valign="top" align="center">AP1</th>
<th valign="top" align="center">AP2</th>
<th valign="top" align="center">AP3</th>
<th valign="top" align="center">nt</th>
<th valign="top" align="center"/>
<th valign="top" align="center">AP1</th>
<th valign="top" align="center">AP2</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left"> 1</td>
<td valign="top" align="center">
<bold>1</bold>
</td>
<td valign="top" align="center"/>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center">
<bold>13</bold>
</td>
<td valign="top" align="center"/>
<td valign="top" align="center">11</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left"> 2</td>
<td valign="top" align="center">
<bold>4</bold>
</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center">3</td>
<td valign="top" align="center">
<bold>21</bold>
</td>
<td valign="top" align="center">13</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">6</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">
<bold>1</bold>
</td>
<td valign="top" align="center">1(a)</td>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left"> 3</td>
<td valign="top" align="center">
<bold>3</bold>
</td>
<td valign="top" align="center"/>
<td valign="top" align="center">1</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">
<bold>5</bold>
</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center"/>
<td valign="top" align="center">3</td>
<td valign="top" align="center"/>
<td valign="top" align="center">
<bold>1</bold>
</td>
<td valign="top" align="center"/>
<td valign="top" align="center">1(b)</td>
</tr>
<tr>
<td valign="top" align="left"> 4</td>
<td valign="top" align="center">
<bold>2</bold>
</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">2</td>
<td valign="top" align="center">
<bold>0</bold>
</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left"> 5</td>
<td valign="top" align="center">
<bold>0</bold>
</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">
<bold>1</bold>
</td>
<td valign="top" align="center"/>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left"> 6</td>
<td valign="top" align="center">
<bold>0</bold>
</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">
<bold>1</bold>
</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left"> 7</td>
<td valign="top" align="center">
<bold>1</bold>
</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left"> 8</td>
<td valign="top" align="center">
<bold>1</bold>
</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left"> 9</td>
<td valign="top" align="center">
<bold>1</bold>
</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center">1</td>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
<td valign="top" align="center"/>
</tr>
<tr>
<td valign="top" align="left">Total</td>
<td valign="top" align="center">
<bold>13</bold>
</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">2</td>
<td valign="top" align="center">9</td>
<td valign="top" align="center">
<bold>41</bold>
</td>
<td valign="top" align="center">15</td>
<td valign="top" align="center">13</td>
<td valign="top" align="center">12</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">
<bold>2</bold>
</td>
<td valign="top" align="center">1</td>
<td valign="top" align="center">1</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Indicated is the distribution of AP-PCR types within the different ST of the non-JP2 genotype strains of A. actinomycetemcomitans, serotype b of Ghanaian (Gh) and Swedish (Sw) origin. The reference (Ref) strains, HK912 (a) and HK 908 (b), which were distributed in AP-PCR type 1 and 2, respectively, are also included. One Ghanaian strain was non-typeable (nt) by AP-PCR. Totals are highlighted in bold.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<title>Discussion</title>
<p>In this work, we have used MLST to investigate the genetic&#xa0;diversity of 56 non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> serotype b, with 41 strains originating from Ghana and 13 from Sweden.</p>
<p>Interestingly, serotype b includes a genetic variant that can be found both among JP2 genotype, and among some non-JP2 genotype strains. We have earlier demonstrated that these strains belong to the same AP-PCR type (i.e., AP-PCR type 1) (<xref ref-type="bibr" rid="B23">Johansson et&#xa0;al., 2017</xref>). While JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> previously have been characterized by MLST, corresponding studies of non-JP2 strains of serotype b have been scarcely reported on (<xref ref-type="bibr" rid="B17">Haubek et&#xa0;al., 2007</xref>). Based on the MLST analysis of the 56 non-JP2 genotype serotype b strains, we suggest that the overall mutation rate of this genotype is rather low. Comparing the nine identified MLST sequence types with their corresponding AP-PCR genotype, we found both similarities and discrepancies, as the strains were distributed in different clusters based on the two genotyping methods.</p>
<p>In this study, although the mutation rate within the non-JP2 genotype strains appeared to be low as evidenced by MLST, discrepancies between the strains of Ghanaian and Swedish origin were detected. This was emphasized by the five unique SNPs among the Ghanaian strains, and seven among the strains isolated from individuals living in Sweden, despite that the number of assessed Swedish strains was more than three times lower. This indicates that the Swedish strains may represent a more diverse group. The reason for this could probably be that the Ghanaian collection of strains was sampled from a more homogeneous group of individuals with regards to age and geographic localization (<xref ref-type="bibr" rid="B21">H&#xf6;glund &#xc5;berg et&#xa0;al., 2012</xref>). The notion that <italic>A. actinomycetemcomitans</italic> serotype b that colonizes the Swedish population, are more prone to mutations is another possible explanation.</p>
<p>
<italic>A. actinomycetemcomitans</italic> strain HK908 is one of few non-JP2 genotype serotype b strains that has been analyzed previously by MLST (<xref ref-type="bibr" rid="B17">Haubek et&#xa0;al., 2007</xref>). This strain was in that study described as non-serotypeable. As HK908 in the study by Haubek and coworkers (<xref ref-type="bibr" rid="B17">Haubek et&#xa0;al., 2007</xref>) was used to illustrate the evolutionary stage, where non-JP2 genotype <italic>A. actinomycetemcomitans</italic> serotype b evolved into the JP2 genotype, we chose to include this strain also in the present study, after confirmation that it did in fact belong to serotype b (<xref ref-type="bibr" rid="B23">Johansson et&#xa0;al., 2017</xref>). For further comparisons, also the non-JP2 genotype serotype b strain, HK 912 was included as a reference. In the study by Haubek and coworkers (<xref ref-type="bibr" rid="B17">Haubek et&#xa0;al., 2007</xref>), HK908 was demonstrated to represent a breaking point, dividing JP2 and non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> of serotype b into two different clusters. In this work, HK908 was instead used to illustrate clustering among non-JP2 genotype strains. As the deletion of an &#x201c;A&#x201d; at nt position 56 in <italic>tbpA</italic> was observed only in non-JP2 genotype serotype b strains in the previous study (<xref ref-type="bibr" rid="B17">Haubek et&#xa0;al., 2007</xref>), we here used the presence and the absence of this deletion as a means to divide the 56 non-JP2 genotype serotype b strains into two major clusters, A and B, respectively. This led to the observation that strains of Ghanaian and Swedish origin were differentially distributed in these clusters, again indicating that there is a genetic diversity between the two collections of non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> serotype b from Ghana and Sweden, respectively.</p>
<p>Different types of PCR-based methods for the characterization of bacterial genomes have been developed during the last decades (<xref ref-type="bibr" rid="B37">van Belkum, 1994</xref>; <xref ref-type="bibr" rid="B24">Jolley and Maiden, 2014</xref>; <xref ref-type="bibr" rid="B3">Bonk et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B38">Wade and Prosdocimi, 2020</xref>). However, similar results will not necessarily be obtained, when bacterial collections are characterized with other PCR-based methods (<xref ref-type="bibr" rid="B35">Tsang et&#xa0;al., 2017</xref>). When we earlier characterized non-JP2 genotype strains of <italic>A</italic>. <italic>actinomycetemcomitans</italic>, serotype b by AP-PCR, we found more than 10 different banding patterns. The strains were grouped into AP-PCR types 1, 2 and others (referred to as AP-PCR type 3 in this work) (<xref ref-type="bibr" rid="B9">Claesson et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B22">Johansson et&#xa0;al., 2019</xref>). Among serotype b, strains of AP-PCR type 1 are in general more leukotoxic than the other AP-PCR types, and they are more frequently associated with periodontitis affecting young individuals (<xref ref-type="bibr" rid="B10">Dogan et&#xa0;al., 1999a</xref>; <xref ref-type="bibr" rid="B20">H&#xf6;glund &#xc5;berg et&#xa0;al., 2014</xref>). Thus, albeit AP-PCR&#x2013;based analyses of <italic>A</italic>. <italic>actinomycetemcomitans</italic> mainly reflects the general genetic diversity within this bacterial species, this methodology can be valuable for diagnostic purposes, to identify highly leukotoxic strains of serotype b. However, evidently AP-PCR is also a time-consuming method, which is associated with difficulties in standardization (<xref ref-type="bibr" rid="B28">Meunier and Grimont, 1993</xref>; <xref ref-type="bibr" rid="B29">Power, 1996</xref>; <xref ref-type="bibr" rid="B36">Tyler et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B32">Suzuki et&#xa0;al., 2003</xref>).</p>
<p>As evidenced from our present study, the MLST scheme implemented appeared not to be a highly discriminatory method to identify AP-PCR type 1, as strains of this AP-PCR&#xa0;type could be found within three different ST-types (ST&#xa0;2,&#xa0;ST 3 and ST 88). Interestingly, AP-PCR type 1 A<italic>. actinomycetemcomitans</italic> strains of serotype b, isolated from both Ghana and Sweden, regardless being of JP2 or non-JP2 genotype, carry a gene that with very few known exceptions is present only in this AP-PCR type, i.e., <italic>cagE</italic> (<xref ref-type="bibr" rid="B23">Johansson et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B22">Johansson et&#xa0;al., 2019</xref>). As discussed earlier (<xref ref-type="bibr" rid="B23">Johansson et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B22">Johansson et&#xa0;al., 2019</xref>), the <italic>cagE</italic> gene product <italic>per se</italic> is most likely not responsible for the increased leukotoxicity of AP-PCR type 1 strains. However, to identify whether carriers are infected with a more virulent <italic>A. actinomycetemcomitans</italic> serotype b, i.e., AP-PCR type 1, which includes both JP2 and non-JP2 genotypes, detection of the <italic>cagE</italic> gene by PCR-based methodology appears to represent a more efficient tool than MLST.</p>
</sec>
<sec id="s5" sec-type="conclusions">
<title>Conclusions</title>
<p>Although based on a limited number of assessed <italic>A. actinomycetemcomitans</italic> strains in this work, especially those collected from carriers in Sweden, there is a clear indication of a geographic dissemination across continents of non-JP2 genotype <italic>A. actinomycetemcomitans</italic> serotype b. Detection of the <italic>cagE</italic> gene is probably the currently known, most straightforward diagnostic procedure for detection of patients carrying the virulent AP-PCR type 1 of <italic>A. actinomycetemcomitans</italic>, serotype b. The <italic>cagE</italic> gene as a marker can be used to identify both JP2 and non-JP2 genotype strains of <italic>A. actinomycetemcomitans</italic> serotype b of this AP-PCR type, with PCR or qPCR, and <italic>cagE</italic>-specific oligonucleotide primers.</p>
</sec>
<sec id="s6" sec-type="data-availability">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material</bold>
</xref>. Further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author Contributions</title>
<p>Conceptualization, RC, AJ, and JO. Methodology, RC, AJ, AE, and JO. Validation, RC, AJ, CH, AE, and JO. Formal analysis, RC, AJ, and JO. Investigation, RC, AJ, and JO. Resources RC, AJ, CH, DH, and JO. Data curation, RC, AJ, and JO. Writing&#x2014;original draft preparation, RC, AJ, and JO. Writing&#x2014;review and editing, RC, AJ, CH, AE, DH, and JO. Visualization, RC, AJ, DH, and JO. Supervision, AJ, RC, and JO. Project administration, RC, AJ, and JO. funding acquisition, AJ and JO. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>This work was supported by TUA grants from the Region of V&#xe4;sterbotten, Sweden (AJ; 7003193 and JO; 7002667), and from Insamlingsstiftelsen, Medical Faculty, Ume&#xe5; University, Sweden.</p>
</sec>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
</body>
<back>
<ack>
<title>Acknowledgments</title>
<p>We are grateful to Chrissie Roth and Ewa Str&#xf6;mkvist-Engbo for valuable technical assistance.</p>
</ack>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fcimb.2021.769671/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fcimb.2021.769671/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="DataSheet_1.pdf" id="SM1" mimetype="application/pdf"/>
</sec>
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