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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Cell Dev. Biol.</journal-id>
<journal-title>Frontiers in Cell and Developmental Biology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Cell Dev. Biol.</abbrev-journal-title>
<issn pub-type="epub">2296-634X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1096899</article-id>
<article-id pub-id-type="doi">10.3389/fcell.2022.1096899</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Cell and Developmental Biology</subject>
<subj-group>
<subject>Mini Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>The many hats of transmembrane emp24 domain protein TMED9 in secretory pathway homeostasis</article-title>
<alt-title alt-title-type="left-running-head">Roberts and Satpute-Krishnan</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fcell.2022.1096899">10.3389/fcell.2022.1096899</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Roberts</surname>
<given-names>Benjamin S.</given-names>
</name>
<uri xlink:href="https://loop.frontiersin.org/people/2098809/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Satpute-Krishnan</surname>
<given-names>Prasanna</given-names>
</name>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2095341/overview"/>
</contrib>
</contrib-group>
<aff>
<institution>Department of Biochemistry and Molecular Biology</institution>, <institution>Uniformed Services University of the Health Sciences</institution>, <addr-line>Bethesda</addr-line>, <addr-line>MD</addr-line>, <country>United States</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1769021/overview">Francesca Zappa</ext-link>, Altos labs, United States</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1521899/overview">Tiziana Anelli</ext-link>, San Raffaele Scientific Institute (IRCCS), Italy</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Prasanna Satpute-Krishnan, <email>prasanna.krishnan@usuhs.edu</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Signaling, a section of the journal Frontiers in Cell and Developmental Biology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>16</day>
<month>01</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>10</volume>
<elocation-id>1096899</elocation-id>
<history>
<date date-type="received">
<day>12</day>
<month>11</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>29</day>
<month>12</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Roberts and Satpute-Krishnan.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Roberts and Satpute-Krishnan</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The secretory pathway is an intracellular highway for the vesicular transport of newly synthesized proteins that spans the endoplasmic reticulum (ER), Golgi, lysosomes and the cell surface. A variety of cargo receptors, chaperones, and quality control proteins maintain the smooth flow of cargo along this route. Among these is vesicular transport protein TMED9, which belongs to the p24/transmembrane emp24 domain (TMED) family of proteins, and is expressed across vertebrate species. The TMED family is comprised of structurally-related type I transmembrane proteins with a luminal N-terminal Golgi-dynamics domain, a luminal coiled-coil domain, a transmembrane domain and a short cytosolic C-terminal tail that binds COPI and COPII coat proteins. TMED9, like other members of the TMED family, was first identified as an abundant constituent of the COPI and COPII coated vesicles that mediate traffic between the ER and the Golgi. TMED9 is typically purified in hetero-oligomers together with TMED family members, suggesting that it may function as part of a complex. Recently, TMED family members have been discovered to play various roles in secretory pathway homeostasis including secreted protein processing, quality control and degradation of misfolded proteins, and post-Golgi trafficking. In particular, TMED9 has been implicated in autophagy, lysosomal sorting, viral replication and cancer, which we will discuss in this Mini-Review.</p>
</abstract>
<kwd-group>
<kwd>transmembrane emp24 domain</kwd>
<kwd>p24 family</kwd>
<kwd>cargo receptor</kwd>
<kwd>autophagy</kwd>
<kwd>secretory pathway homeostasis</kwd>
<kwd>COP Coatomer</kwd>
<kwd>endoplasmic reticulum</kwd>
<kwd>Golgi</kwd>
</kwd-group>
<contract-sponsor id="cn001">National Institute of General Medical Sciences<named-content content-type="fundref-id">10.13039/100000057</named-content>
</contract-sponsor>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>The first member of the transmembrane emp24 domain (TMED) family proteins, TMED11, was discovered in rough microsomes derived from canine endoplasmic reticulum (ER) in 1991 (<xref ref-type="bibr" rid="B81">Wada et al., 1991</xref>). Within a few years, TMED9 and other TMED family proteins were found to be type I transmembrane COPI and COPII coatomer binding proteins localized to the secretory pathway and conserved across mammals, yeast, and plants (<xref ref-type="bibr" rid="B67">Schimmoller et al., 1995</xref>; <xref ref-type="bibr" rid="B72">Stamnes et al., 1995</xref>; <xref ref-type="bibr" rid="B7">Belden and Barlowe, 1996</xref>; <xref ref-type="bibr" rid="B29">Elrod-Erickson and Kaiser, 1996</xref>; <xref ref-type="bibr" rid="B71">Sohn et al., 1996</xref>; <xref ref-type="bibr" rid="B26">Dominguez et al., 1998</xref>; <xref ref-type="bibr" rid="B19">Contreras et al., 2004a</xref>; <xref ref-type="bibr" rid="B20">Contreras et al., 2004b</xref>). The TMED family was originally referred to as the p24 family after their size (&#x223c;24&#xa0;kDa), subfamily (&#x251;, &#x3b2;, &#x3b4;, or &#x3b3;), and the order in which they were identified (1&#x2013;5) (<xref ref-type="bibr" rid="B74">Strating et al., 2009</xref>). Each TMED protein has several aliases. <xref ref-type="bibr" rid="B74">Strating et al. (2009)</xref> organized the names in a useful reference table.</p>
<p>The secretory pathway is the major biosynthetic hub for the production, secretion, and turnover of soluble secretory and transmembrane proteins in eukaryotic cells. Traffic through the secretory pathway begins at the ER, where proteins are synthesized, folded, and processed prior to export to the Golgi for subsequent transport to the cell surface or lysosomes. Within the early secretory pathway, which is comprised of the ER, ER-Golgi intermediate compartment (ERGIC) and Golgi, protein folding is aided and monitored by chaperones and protein quality control (PQC) machinery (<xref ref-type="bibr" rid="B4">Anelli and Sitia, 2008</xref>; <xref ref-type="bibr" rid="B2">Adams et al., 2019</xref>; <xref ref-type="bibr" rid="B75">Sun and Brodsky, 2019</xref>). While TMED9 and TMED family members are well-characterized as regulators of homeostasis and vesicular transport within the early secretory pathway (<xref ref-type="bibr" rid="B73">Strating and Martens, 2009</xref>; <xref ref-type="bibr" rid="B63">Pastor-Cantizano et al., 2016</xref>; <xref ref-type="bibr" rid="B21">D&#x27;Arcangelo et al., 2015</xref>; <xref ref-type="bibr" rid="B6">Belden and Barlowe, 2001</xref>; <xref ref-type="bibr" rid="B29">Elrod-Erickson and Kaiser, 1996</xref>), their precise functions within this area are yet to be determined.</p>
<p>TMED family proteins promote efficient and selective secretion of diverse classes of proteins. TMED family members, including TMED10 and TMED2, facilitate ER-export of glycosylphosphatidylinositol-anchored proteins (GPI-APs) in yeast and cultured mammalian cells (<xref ref-type="bibr" rid="B54">Muniz et al., 2000</xref>; <xref ref-type="bibr" rid="B50">Marzioch et al., 1999</xref>; <xref ref-type="bibr" rid="B21">D&#x27;Arcangelo et al., 2015</xref>; <xref ref-type="bibr" rid="B67">Schimmoller et al., 1995</xref>; <xref ref-type="bibr" rid="B6">Belden and Barlowe, 2001</xref>; <xref ref-type="bibr" rid="B33">Fujita et al., 2011</xref>), and are required for ER-export of misfolded GPI-APs destined for lysosomal degradation (<xref ref-type="bibr" rid="B66">Satpute-Krishnan et al., 2014</xref>; <xref ref-type="bibr" rid="B70">Sikorska et al., 2016</xref>; <xref ref-type="bibr" rid="B87">Zavodszky and Hegde, 2019</xref>). TMED10 was recently shown to promote the unconventional protein secretion (UPS) of leaderless cargo including mature IL-1&#x3b2; (<xref ref-type="bibr" rid="B89">Zhang M. et al., 2020</xref>). TMED9 in particular has emerged as a major regulator of secretory pathway protein homeostasis through its involvement in protein trafficking and degradation. TMED9 has a propensity to form and function as a hetero-oligomer with other TMED family members (<xref ref-type="bibr" rid="B7">Belden and Barlowe, 1996</xref>; <xref ref-type="bibr" rid="B34">Fullekrug et al., 1999</xref>; <xref ref-type="bibr" rid="B54">Muniz et al., 2000</xref>; <xref ref-type="bibr" rid="B33">Fujita et al., 2011</xref>). Therefore, in this review we will describe TMED9 in the context of the larger TMED family of proteins.</p>
</sec>
<sec id="s2">
<title>The TMED family of secretory pathway proteins</title>
<sec id="s2-1">
<title>TMED protein expression patterns</title>
<p>In humans there are 11 genes annotated as TMED1-11. TMED family members are expressed throughout the body, as demonstrated in mice (<xref ref-type="bibr" rid="B74">Strating et al., 2009</xref>), and are highly expressed in secretory cell types (<xref ref-type="bibr" rid="B88">Zhang and Volchuk, 2010</xref>). Given their ubiquity, it is thus unsurprising that some TMED proteins are developmentally essential and knockout of either <italic>TMED2</italic> or <italic>TMED10</italic> is embryonic lethal in mice (<xref ref-type="bibr" rid="B23">Denzel et al., 2000</xref>; <xref ref-type="bibr" rid="B41">Jerome-Majewska et al., 2010</xref>) and reduces viability in cultured cells (<xref ref-type="bibr" rid="B9">Blomen et al., 2015</xref>).</p>
<p>Various studies have shown that the TMED proteins form oligomers of varying stoichiometry (<xref ref-type="bibr" rid="B34">Fullekrug et al., 1999</xref>; <xref ref-type="bibr" rid="B30">Emery et al., 2000</xref>; <xref ref-type="bibr" rid="B40">Jenne et al., 2002</xref>). A series of siRNA knockdown experiments revealed that knockdown of TMEDs 2, 4, 5, 9, or 10 destabilized other TMED family members while TMED7 knockdown primarily affected TMED5. Loss of TMEDs nine or 10 inhibited GPI-AP trafficking, whereas WNT trafficking was inhibited in cells lacking either TMEDs 2, 4, 9, or 10 (<xref ref-type="bibr" rid="B76">Tashima et al., 2022</xref>). Because of the interdependency between TMED family member expression and function, it is technically challenging to discriminate between the functions of individual TMED proteins or their oligomeric complexes.</p>
</sec>
<sec id="s2-2">
<title>The role of TMED9 in the secretory pathway</title>
<p>Mammalian TMED9 and its yeast homolog, Erv25p, were first discovered as secretory pathway proteins (<xref ref-type="bibr" rid="B26">Dominguez et al., 1998</xref>; <xref ref-type="bibr" rid="B50">Marzioch et al., 1999</xref>). TMED9 localizes primarily to the ER and ERGIC, but is found in post-Golgi secretory vesicles along with other TMED family proteins (<xref ref-type="bibr" rid="B68">Shevchenko et al., 1997</xref>; <xref ref-type="bibr" rid="B26">Dominguez et al., 1998</xref>; <xref ref-type="bibr" rid="B50">Marzioch et al., 1999</xref>; <xref ref-type="bibr" rid="B12">Breuza et al., 2004</xref>). Later TMED9 was discovered to be critical for the generation of ER exit sites (ERES) in a cell-free microsome budding assay (<xref ref-type="bibr" rid="B45">Lavoie et al., 1999</xref>). Further emphasizing its role(s) in the secretory pathway, depletion of TMED9 leads to the fragmentation of Golgi structures and the partial dissociation of COPI from the Golgi (<xref ref-type="bibr" rid="B52">Mitrovic et al., 2008</xref>). The yeast homolog of TMED9, Erv25p, has been shown to be play a role in efficient ER-to-Golgi transport of the yeast GPI-AP, Gas1 (<xref ref-type="bibr" rid="B7">Belden and Barlowe, 1996</xref>). However teasing apart TMED9&#x2019;s individual role from other TMED-family members, including TMEDs 2 and 10, is difficult because knockdown of each impacts the expression of the others (<xref ref-type="bibr" rid="B33">Fujita et al., 2011</xref>). Taken together, TMED9 along with its family appears to regulate multiple critical trafficking steps in the secretory pathway. Excellent reviews have been written to discuss the role of the TMED proteins in the early secretory pathway (<xref ref-type="bibr" rid="B63">Pastor-Cantizano et al., 2016</xref>; <xref ref-type="bibr" rid="B1">Aber et al., 2019</xref>).</p>
<p>Recently, TMED9 was shown to participate in unconventional protein secretion (UPS) from the ER to the plasma membrane during ER stress in cells expressing the dominant-inhibitory form of ADP-ribosylation factor 1 (ARF1-Q71L), which blocks ER-to-Golgi transport (<xref ref-type="bibr" rid="B62">Park et al., 2022</xref>). TMED9 was found to participate in the assembly of a heterooligomeric trafficking complex governing SARS-Cov2 spike protein and cystic fibrosis transmembrane conductance regulator (CFTR) secretion (<xref ref-type="bibr" rid="B62">Park et al., 2022</xref>). Although <xref ref-type="bibr" rid="B62">Park et al. (2022)</xref> found that TMED9 did not bind to CFTR or Spike proteins, silencing TMED9 reduced the cell surface trafficking of these UPS cargo. These findings suggest that TMED9 may participate in a variety of yet undiscovered trafficking pathways.</p>
</sec>
<sec id="s2-3">
<title>Structure-function relationships in the TMED family</title>
<p>The TMED proteins are structurally conserved among eukaryotes despite significant variations in sequence identity (<xref ref-type="bibr" rid="B74">Strating et al., 2009</xref>) (<xref ref-type="fig" rid="F1">Figure 1A</xref>). Each family member contains four major regions: the GOLD domain, coiled-coil domain, transmembrane domain, and a cytoplasmic COP-binding region (<xref ref-type="fig" rid="F1">Figures 1B, C</xref>). Whether these conserved domains allow the TMED proteins to act interchangeably in certain processes is unknown.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>
<bold>(A)</bold> The protein sequence for human TMEDs 1, 2, 3, 4, 5, 6, 7, 9, and 10 are shown. Sequences were aligned with Muscle and drawn with AlignmentViewer (<ext-link ext-link-type="uri" xlink:href="http://alignmentviewer.org">alignmentviewer.org</ext-link>). Aligned amino acids are colored in the Clustal2 color code. Structural motifs for TMED9 are indicated (SS: signal sequence, GOLD, CC: coiled-coil, TMD: transmembrane domain, COP: COPI/II). <bold>(B)</bold> The Alphafold (<xref ref-type="bibr" rid="B43">Jumper et al., 2021</xref>; <xref ref-type="bibr" rid="B80">Varadi et al., 2022</xref>) structure for the human TMED9 protein (AF-Q9BVK6-F1). The signal sequence (SS, red), GOLD domain (yellow), coiled-coil (CC, lilac), transmembrane domain (TMD, green), and COP I/II (pink) binding sites are indicated <bold>(C)</bold> A predicted domain map of the human TMED9 protein (Q9BVK6) as compiled and annotated by Uniprot (<xref ref-type="bibr" rid="B79">UniProt, 2021</xref>). The structural domains from the N-terminus &#x201c;N&#x201d; to the C-terminus &#x201c;C&#x201d; in <bold>(B)</bold> are indicated, as well as a conserved disulfide bond, N-linked glycan (GlcNAc), and the COPI and COPII binding sites. Amino acid positions are given and domains are depicted to scale.</p>
</caption>
<graphic xlink:href="fcell-10-1096899-g001.tif"/>
</fig>
<sec id="s2-3-1">
<title>GOLD domain</title>
<p>The Golgi dynamics (GOLD) domain consists of eight &#x3b2;-strands and one disulfide bond (<xref ref-type="bibr" rid="B57">Nagae et al., 2016</xref>). Despite low sequence homology, the GOLD domains found in TMEDs 1, 2, 5, and 10 are structurally similar (<xref ref-type="bibr" rid="B57">Nagae et al., 2016</xref>; <xref ref-type="bibr" rid="B58">Nagae et al., 2017</xref>; <xref ref-type="bibr" rid="B53">Mota et al., 2022</xref>). The GOLD domain is chiefly involved in hetero and homo-oligomerization (<xref ref-type="bibr" rid="B57">Nagae et al., 2016</xref>; <xref ref-type="bibr" rid="B89">Zhang M. et al., 2020</xref>; <xref ref-type="bibr" rid="B53">Mota et al., 2022</xref>). Heterodimerization occurs across a range of sites on each GOLD domain, depending on the TMED proteins involved (<xref ref-type="bibr" rid="B57">Nagae et al., 2016</xref>). Dimerization is dependent on solution ionic strength (<xref ref-type="bibr" rid="B53">Mota et al., 2022</xref>) and pH (<xref ref-type="bibr" rid="B57">Nagae et al., 2016</xref>) <italic>in vitro</italic>, suggesting that intracellular localization may influence dimerization. These findings are largely sourced from studies involving purified GOLD domains rather than intact TMED proteins. Beyond its role in oligomerization, the GOLD domain has also been shown to participate in substrate recognition (<xref ref-type="bibr" rid="B62">Park et al., 2022</xref>) and the interaction between TMEDs 9 and 10 with syntaxin 17 (<xref ref-type="bibr" rid="B56">Muppirala et al., 2011</xref>).</p>
</sec>
<sec id="s2-3-2">
<title>Coiled-coil domain</title>
<p>The coiled-coil (CC) domain mediates TMED oligomerization and substrate recognition. Early observations showed that CC deletion abolished post-ER transport of hetero-oligomeric complexes (<xref ref-type="bibr" rid="B16">Ciufo and Boyd, 2000</xref>; <xref ref-type="bibr" rid="B30">Emery et al., 2000</xref>) and recently the TMED7 CC was shown to participate in TMED7 homooligomerization (<xref ref-type="bibr" rid="B94">Liaunardy-Jopeace et al., 2014</xref>). Recent studies have also shown that the CC domain appears to mediate substrate recognition in the case of GPI-anchored proteins (<xref ref-type="bibr" rid="B78">Theiler et al., 2014</xref>) and TLR4 complex binding (<xref ref-type="bibr" rid="B94">Liaunardy-Jopeace et al., 2014</xref>).</p>
</sec>
<sec id="s2-3-3">
<title>Transmembrane domain</title>
<p>The transmembrane domain (TMD) is essential in TMED protein sorting. The TMD of TMED2 but not TMED10 binds to sphingomyelin (SM) C18, promoting TMED2 dimerization and regulating cargo transport (<xref ref-type="bibr" rid="B13">Brugger et al., 2000</xref>; <xref ref-type="bibr" rid="B18">Contreras et al., 2012</xref>; <xref ref-type="bibr" rid="B3">Aisenbrey et al., 2019</xref>; <xref ref-type="bibr" rid="B61">Pannwitt et al., 2019</xref>). It is unclear if other TMED family members interact with SM in this way. Because membrane lipid content can affect membrane thickness, TMD length and lipid binding may increase the affinity of TMED proteins for membrane microdomains that are enriched with SM. Whereas no defined sorting motif has been identified within TMED protein TMDs, lengthening the TMED10 TMD impacts that protein&#x2019;s sorting (<xref ref-type="bibr" rid="B10">Blum and Lepier, 2008</xref>). Intriguingly, it has been reported that membrane SM content affects the formation of coatomer protein (COP)-marked vesicles (<xref ref-type="bibr" rid="B13">Brugger et al., 2000</xref>). It is possible this effect is mediated by TMED proteins, since they interact with membrane lipids and COP (<xref ref-type="bibr" rid="B61">Pannwitt et al., 2019</xref>).</p>
</sec>
<sec id="s2-3-4">
<title>Cytoplasmic domain</title>
<p>The cytoplasmic tail of the TMED proteins contains a region required for COP I/II binding, which we will discuss below. In addition, the cytoplasmic domain has been shown to bind to mature IL1&#x3b2; for TMED10 (<xref ref-type="bibr" rid="B89">Zhang M. et al., 2020</xref>), and syntaxin 17 and TC48 for TMEDs 9 and 10 (<xref ref-type="bibr" rid="B56">Muppirala et al., 2011</xref>; <xref ref-type="bibr" rid="B55">Muppirala et al., 2013</xref>). Intriguingly, the TMED9 cytoplasmic domain was also recently implicated in the formation of autophagic vesicles through its interaction with Sec12, the guanine-nucleotide exchange factor for Sar1 that functions upstream of COPII coat assembly (<xref ref-type="bibr" rid="B83">Weissman et al., 2001</xref>; <xref ref-type="bibr" rid="B46">Li et al., 2022</xref>).</p>
<p>COPI proteins bind to dilysine (KKXX) motifs and structurally related sites in cargo proteins (<xref ref-type="bibr" rid="B49">Ma and Goldberg, 2013</xref>). Of the TMEDs, only TMEDs 4, 9, 10, and 11 include a canonical KKXX motif, however KXK motifs in some TMED orthologs also enable COPI binding (<xref ref-type="bibr" rid="B77">Teasdale and Jackson, 1996</xref>; <xref ref-type="bibr" rid="B26">Dominguez et al., 1998</xref>; <xref ref-type="bibr" rid="B6">Belden and Barlowe, 2001</xref>; <xref ref-type="bibr" rid="B63">Pastor-Cantizano et al., 2016</xref>; <xref ref-type="bibr" rid="B79">UniProt, 2021</xref>). Consequently, TMEDs 9 and 10 have been shown to bind COPI components more strongly than TMEDs 2, 3, or 7. COPI binding is important for TMED retrieval from the Golgi back to the ER (<xref ref-type="bibr" rid="B11">Bremser et al., 1999</xref>) and mutations of this motif in TMEDs 2, 9, and 10 alters their ER-Golgi cycling kinetics (<xref ref-type="bibr" rid="B26">Dominguez et al., 1998</xref>; <xref ref-type="bibr" rid="B10">Blum and Lepier, 2008</xref>). Interestingly, COPI components recognize TMED oligomers rather than TMED monomers (<xref ref-type="bibr" rid="B8">Bethune et al., 2006</xref>).</p>
<p>COPII binding to the TMED proteins is mediated through aromatic residues in the cytoplasmic domain which fit into a binding pocket in the SEC24 COPII coat proteins (<xref ref-type="bibr" rid="B48">Ma et al., 2017</xref>). While all TMED family proteins display cytoplasmic aromatic residues, variations in the polypeptide sequence enable different TMED proteins to associate with different SEC24 isoforms (<xref ref-type="bibr" rid="B84">Wendeler et al., 2007</xref>).</p>
</sec>
</sec>
</sec>
<sec id="s3">
<title>TMED9 interactions in health and disease</title>
<p>Only a handful of diseases have been directly linked to TMED9. However, TMED family proteins have been tied to a variety of human diseases. Because the TMED proteins function as heteromeric complexes, TMED9 is likely to participate in some of the diseases associated with other TMED family members. Thus, we have listed diseases associated with each of the TMED proteins in <xref ref-type="table" rid="T1">Table 1</xref>.</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Diseases associated with individual TMED family proteins.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Protein</th>
<th align="left">Associated diseases</th>
<th align="left">Additional reference</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">TMED1</td>
<td align="left">Cardiovascular disease</td>
<td align="left">
<xref ref-type="bibr" rid="B47">Liew et al. (2010)</xref>; <xref ref-type="bibr" rid="B17">Connolly et al. (2013)</xref>
</td>
</tr>
<tr>
<td align="left">TMED2</td>
<td align="left">Non-alcoholic fatty liver disease</td>
<td align="left">
<xref ref-type="bibr" rid="B39">Hou et al. (2017)</xref>
</td>
</tr>
<tr>
<td align="left">TMED3</td>
<td align="left">Colon cancer</td>
<td align="left">
<xref ref-type="bibr" rid="B27">Duquet et al. (2014)</xref>
</td>
</tr>
<tr>
<td align="left">TMED4</td>
<td align="left"/>
<td align="left"/>
</tr>
<tr>
<td align="left">TMED5</td>
<td align="left">Cervical cancer</td>
<td align="left">
<xref ref-type="bibr" rid="B86">(Yang et al., 2019</xref>; <xref ref-type="bibr" rid="B85">Yang et al., 2021)</xref>
</td>
</tr>
<tr>
<td align="left">TMED6</td>
<td align="left">Diabetes</td>
<td align="left">
<xref ref-type="bibr" rid="B82">Wang et al. (2012)</xref>
</td>
</tr>
<tr>
<td align="left">TMED7</td>
<td align="left">Amyotrophic lateral sclerosis</td>
<td align="left">(<xref ref-type="bibr" rid="B93">Pradat et al., 2012</xref>)</td>
</tr>
<tr>
<td align="left">TMED9</td>
<td align="left">Breast cancer, Colon cancer, Head and neck squamous cell carcinoma, Hepatocellular carcinoma, Mucin-1 kidney disease, Epithelial ovarian cancer</td>
<td align="left">
<xref ref-type="bibr" rid="B28">Dvela-Levitt et al. (2019)</xref>; <xref ref-type="bibr" rid="B51">Mishra et al. (2019)</xref>; <xref ref-type="bibr" rid="B42">Ju et al. (2021)</xref>; <xref ref-type="bibr" rid="B85">Yang et al. (2021)</xref>; <xref ref-type="bibr" rid="B37">Han et al. (2022)</xref>
</td>
</tr>
<tr>
<td align="left">TMED10</td>
<td align="left">Alzheimer&#x2019;s disease</td>
<td align="left">
<xref ref-type="bibr" rid="B15">Chen et al. (2006)</xref>; <xref ref-type="bibr" rid="B69">Shin et al. (2019)</xref>
</td>
</tr>
</tbody>
</table>
</table-wrap>
<sec id="s3-1">
<title>Cancer</title>
<p>Elevated <italic>TMED9</italic> expression has been observed in multiple cancer types (<xref ref-type="bibr" rid="B42">Ju et al., 2021</xref>). In breast cancer, elevated TMED9 levels are associated with poor prognoses (<xref ref-type="bibr" rid="B42">Ju et al., 2021</xref>). In head and neck squamous cell carcinoma, expression of each of the TMED proteins is elevated. In particular, high expression of <italic>TMEDs 2, 9,</italic> and <italic>10</italic> was found to be associated with poor prognoses, whereas high expression of TMEDs 1, 3, 4, 5, 6, and 7 was not (<xref ref-type="bibr" rid="B35">Gao et al., 2022</xref>). Similarly, elevated <italic>TMED9</italic> expression is associated with reduced survival time in individuals with epithelial ovarian cancer (EOC) <italic>in vivo.</italic> TMED9 knockdown reduces EOC cell proliferation <italic>in vitro</italic> (<xref ref-type="bibr" rid="B37">Han et al., 2022</xref>).</p>
<p>TMED9 expression may regulate cancer cell proliferation through its effect on growth factor signaling (<xref ref-type="bibr" rid="B14">Buechling et al., 2011</xref>; <xref ref-type="bibr" rid="B59">Nakano et al., 2017</xref>; <xref ref-type="bibr" rid="B90">Zhang X. et al., 2020</xref>; <xref ref-type="bibr" rid="B24">Di Minin et al., 2022</xref>; <xref ref-type="bibr" rid="B76">Tashima et al., 2022</xref>). For example, biochemical and microscopy approaches revealed that TMED9 loss was associated with dysregulation of TGF&#x251; trafficking and secretion in colon cancer and hepatocellular carcinoma cells (<xref ref-type="bibr" rid="B51">Mishra et al., 2019</xref>; <xref ref-type="bibr" rid="B85">Yang et al., 2021</xref>). Furthermore, loss of TMED9 led to impaired WNT trafficking (<xref ref-type="bibr" rid="B76">Tashima et al., 2022</xref>) and significant changes in the expression of genes regulated by WNT signaling (<xref ref-type="bibr" rid="B85">Yang et al., 2021</xref>). This TMED9-WNT signaling axis has been implicated in Paneth cell function in the intestines (<xref ref-type="bibr" rid="B36">Goga et al., 2021</xref>).</p>
</sec>
<sec id="s3-2">
<title>Neurodegenerative disease</title>
<p>The TMED proteins have been implicated in various neurodegenerative diseases. TMED10 associates with and is required for the clearance of artificial and prion-disease associated mutants of prion protein (PrP) (<xref ref-type="bibr" rid="B66">Satpute-Krishnan et al., 2014</xref>). TMED2 was found to co-immunoprecipitate with atlastin whose misfolding leads to hereditary spastic paraplegia (<xref ref-type="bibr" rid="B60">Namekawa et al., 2007</xref>). Although TMED9 has not been thoroughly studied in the context of neurological disease, TMED9 has been shown to interact with wild type TDP-43, whose aggregation has been associated with the development of amyotrophic lateral sclerosis (ALS) (<xref ref-type="bibr" rid="B64">Redler and Dokholyan, 2012</xref>; <xref ref-type="bibr" rid="B32">Feneberg et al., 2020</xref>), and to associate with spastin whose mutations lead to hereditary spastic paraplegia (<xref ref-type="bibr" rid="B65">Reid et al., 2005</xref>). The precise motifs or domains of TMED9 involved in binding to TDP-43 or spastin remain unknown.</p>
<p>Various studies have demonstrated that alterations in TMED9 and TMED10 (commonly referred to as TMP21 in the Alzheimer&#x2019;s field) expression promote the processing of amyloid precursor protein (APP) to amyloid beta (A&#x3b2;) by &#x3b3;-secretase. Alzheimer&#x2019;s disease has been associated with mutations in the genes encoding subunits of &#x3b3;-secretase (<xref ref-type="bibr" rid="B92">Zhang et al., 2011</xref>). A single nucleotide polymorphism in <italic>TMED10</italic> that resulted in heightened TMP21 expression was found to be genetically associated with Alzheimer&#x2019;s disease in patients (<xref ref-type="bibr" rid="B91">Zhang et al., 2018</xref>). Additionally, alterations in <italic>TMED10</italic> expression were found to impact pathological APP processing in cell culture models (<xref ref-type="bibr" rid="B91">Zhang et al., 2018</xref>). TMED10/TMP21 has been shown to co-immunoprecipitate with and regulate the activity of the &#x3b3;-secretase complex. Intriguingly, depletion of TMED10/TMP21, results in increased generation of A&#x3b2; (<xref ref-type="bibr" rid="B15">Chen et al., 2006</xref>; <xref ref-type="bibr" rid="B25">Dolcini et al., 2008</xref>). Similarly, TMED9 co-immunoprecipitates with the core &#x3b3;-secretase components and knockdown of TMED9 mRNA induces an increase in A&#x3b2; generation (<xref ref-type="bibr" rid="B38">Hasegawa et al., 2010</xref>; <xref ref-type="bibr" rid="B5">Bai et al., 2015</xref>). Because of TMED9&#x2019;s tendency to heterooligomerize with TMED10/TMP21 (<xref ref-type="bibr" rid="B26">Dominguez et al., 1998</xref>; <xref ref-type="bibr" rid="B34">Fullekrug et al., 1999</xref>), TMED9 may function in a complex with TMED10/TMP21 to regulate &#x3b3;-secretase processing of APP.</p>
</sec>
<sec id="s3-3">
<title>Mucin kidney disease</title>
<p>The proteinopathy mucin-1 kidney disease (MKD) results from a frameshift mutation in the <italic>MUC1</italic> gene. (<xref ref-type="bibr" rid="B28">Dvela-Levitt et al. (2019)</xref> recently demonstrated that TMED9 binds to and mediates the post-ER trafficking of MUC1 aggregates. Under steady-state conditions, this TMED9-MUC1 complex drives the accumulation of toxic MUC1 in the ERGIC. Fortuitously, the authors found that the small molecule BRD4780 was able to reduce MUC1 aggregate levels both <italic>in vivo</italic> in mice and <italic>in vitro</italic> in cell culture and human kidney organoid models by reducing TMED9 stability and accelerating clearance of TMED9-MUC1 complexes from the ER and ERGIC to lysosomes (<xref ref-type="bibr" rid="B28">Dvela-Levitt et al., 2019</xref>).</p>
</sec>
</sec>
<sec id="s4">
<title>TMED9 in autophagy</title>
<p>Over the last decade, TMED9 has emerged as an important regulator of cellular proteostasis. It has recently been shown that TMED9 contributes to autophagy and autophagosome biogenesis. TMED9 was first identified in intracellular vesicles enriched with ATG9 and Rab1 thought to participate in autophagosome assembly (<xref ref-type="bibr" rid="B44">Kakuta et al., 2017</xref>). A role for TMED9 in autophagosome maturation was later demonstrated by <xref ref-type="bibr" rid="B31">Evans et al. (2021)</xref>. The authors found that TMED9 knockdown attenuated autophagic activity and reduced viral production, potentially by decreasing COPII-dependent viral transport (<xref ref-type="bibr" rid="B22">Delorme-Axford et al., 2014</xref>; <xref ref-type="bibr" rid="B31">Evans et al., 2021</xref>).</p>
<p>In line with these findings, TMED9 was recently shown to directly participate in autophagosome biogenesis. It has long been known that TMED9 participates in ER exit site (ERES) formation for cargo transport to the Golgi (<xref ref-type="bibr" rid="B45">Lavoie et al., 1999</xref>; <xref ref-type="bibr" rid="B33">Fujita et al., 2011</xref>). However, <xref ref-type="bibr" rid="B46">Li et al. (2022)</xref> found that ERES-localized Sec12 and ERGIC-localized TMED9 interact directly in trans through their cytoplasmic domains, bringing ERES into close proximity with the ERGIC. ERES-ERGIC association is important for the generation of starvation-induced autophagosomes (<xref ref-type="bibr" rid="B46">Li et al., 2022</xref>). These findings suggest that TMED9 may directly influence the recruitment of COPII machinery at the ERGIC to contribute membranes for autophagosome formation.</p>
</sec>
<sec sec-type="discussion" id="s5">
<title>Discussion</title>
<p>TMED9 has been found in every organelle along the secretory pathway from the ER and Golgi, to the plasma membrane, to lysosomes and autophagosomes (<xref ref-type="bibr" rid="B38">Hasegawa et al., 2010</xref>; <xref ref-type="bibr" rid="B46">Li et al., 2022</xref>). While precise mechanistic functions of TMED9 remain elusive at each point, it is clear that TMED9 wears many hats in secretory pathway homeostasis. Building upon early findings that TMED9 binds to COPI and COPII coat proteins (<xref ref-type="bibr" rid="B45">Lavoie et al., 1999</xref>), recent studies indicate that TMED9 regulates the initial recruitment of COP machinery to the ERGIC membrane to promote the formation of autophagic membranes in coordination with COPII machinery (<xref ref-type="bibr" rid="B44">Kakuta et al., 2017</xref>; <xref ref-type="bibr" rid="B31">Evans et al., 2021</xref>; <xref ref-type="bibr" rid="B46">Li et al., 2022</xref>). Furthermore, <italic>TMED9</italic> expression correlates with the development of multiple cancer types. Roles for TMED9 in the regulation of cancer cell growth (<xref ref-type="bibr" rid="B51">Mishra et al., 2019</xref>; <xref ref-type="bibr" rid="B42">Ju et al., 2021</xref>; <xref ref-type="bibr" rid="B85">Yang et al., 2021</xref>), APP processing (<xref ref-type="bibr" rid="B38">Hasegawa et al., 2010</xref>; <xref ref-type="bibr" rid="B5">Bai et al., 2015</xref>), and protein degradation (<xref ref-type="bibr" rid="B28">Dvela-Levitt et al., 2019</xref>) underscore the importance of this cargo receptor in health and disease.</p>
<sec id="s5-1">
<title>Future directions</title>
<p>The TMED protein family field is a rapidly evolving area of research. The exciting discovery that BRD4780 targets pathological TMED9-MUC1 aggregates to lysosomes demonstrates the potential to pharmacologically target TMED proteins for the resolution of proteinopathies (<xref ref-type="bibr" rid="B28">Dvela-Levitt et al., 2019</xref>). It is as yet unclear how BRD4780 induces lysosomal degradation of TMED9-MUC1, but possible mechanisms may involve directly altering TMED9&#x2019;s structure or by preventing its oligomerization with other TMED family members. Preventing hetero-oligomerization of TMED9 has been shown to reduce its stability and the stability of other TMED proteins (<xref ref-type="bibr" rid="B76">Tashima et al., 2022</xref>). Because of this interdependence, BRD4780 may potentially be exploited to modulate various PQC pathways involving TMED heterooligomers. These findings encourage future research into the role of TMED9 and the other TMED proteins in clinical proteinopathies.</p>
<p>Beyond their clinical implications, the TMED proteins have now been shown to participate in a variety of essential cellular processes. New empirical tools such as cryoelectron microscopy and AI based modeling tools like Alphafold2 enable future structural studies to better characterize the interaction of the TMED proteins with one another and their cargo. Furthermore, structure-driven mutagenesis strategies may be used to disrupt oligomer formation in order to reveal the independent functions of the TMED proteins in the secretory pathway. Compelling questions include: Does environmental pH affect the function and binding of TMED proteins? Does N-linked glycosylation influence TMED cargo recognition? What is the precise role of TMED9 in autophagosome biogenesis, and how is this balanced with its role in secretion? What are the specific roles of each TMED family member and their various oligomeric states? As we gain answers, we may soon understand the functions and clinical relevance of TMED9 and its stubbornly mysterious family of proteins.</p>
</sec>
</sec>
</body>
<back>
<sec id="s6">
<title>Author contributions</title>
<p>BR and PS-K have substantially and directly contributed to the conception, writing and design of this work. BR prepared the figure and table with input from PS-K.</p>
</sec>
<ack>
<p>We thank Karen Williams for her invaluable support.</p>
</ack>
<sec sec-type="COI-statement" id="s7">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s8">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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