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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Built Environ.</journal-id>
<journal-title>Frontiers in Built Environment</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Built Environ.</abbrev-journal-title>
<issn pub-type="epub">2297-3362</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">891612</article-id>
<article-id pub-id-type="doi">10.3389/fbuil.2022.891612</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Built Environment</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Wave Attenuation by Vegetation: Model Implementation and Validation Study</article-title>
<alt-title alt-title-type="left-running-head">Abdolali et al.</alt-title>
<alt-title alt-title-type="right-running-head">Wave&#x2013;Vegetation Interaction</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Abdolali</surname>
<given-names>Ali</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1489515/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hesser</surname>
<given-names>Tyler J.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Anderson Bryant</surname>
<given-names>Mary</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Roland</surname>
<given-names>Aron</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Khalid</surname>
<given-names>Arslaan</given-names>
</name>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1710954/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Smith</surname>
<given-names>Jane</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1058653/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ferreira</surname>
<given-names>Celso</given-names>
</name>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/715726/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Mehra</surname>
<given-names>Avichal</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/627024/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Sikiric</surname>
<given-names>Mathieu Dutour</given-names>
</name>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>NWS/NCEP/Environmental Modeling Center</institution>, <institution>National Oceanic and Atmospheric Administration (NOAA)</institution>, <addr-line>College Park</addr-line>, <addr-line>MD</addr-line>, <country>United States</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>I.M. Systems Group, Inc. (IMSG)</institution>, <addr-line>Rockville</addr-line>, <addr-line>MD</addr-line>, <country>United States</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>University of Maryland</institution>, <addr-line>College Park</addr-line>, <addr-line>MD</addr-line>, <country>United States</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>US Army Engineer Research and Development Center</institution>, <institution>Coastal and Hydraulics Laboratory</institution>, <addr-line>Vicksburg</addr-line>, <addr-line>MS</addr-line>, <country>United States</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>BGS IT &#x26; E</institution>, <addr-line>Darmstadt</addr-line>, <country>Germany</country>
</aff>
<aff id="aff6">
<sup>6</sup>
<institution>Civil, Environmental and Infrastructure Engineering</institution>, <institution>George Mason University</institution>, <addr-line>Fairfax</addr-line>, <addr-line>VA</addr-line>, <country>United States</country>
</aff>
<aff id="aff7">
<sup>7</sup>
<institution>Laboratory for Physic of the Sea and Chemistry of Water Systems</institution>, <institution>Rudjer Bo&#x161;kovi&#x107; Institute</institution>, <addr-line>Zagreb</addr-line>, <country>Croatia</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/951712/overview">Spyros Hirdaris</ext-link>, Aalto University, Finland</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1230931/overview">Edgar Mendoza</ext-link>, National Autonomous University of Mexico, Mexico</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/849549/overview">Giovanni Besio</ext-link>, University of Genoa, Italy</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Ali Abdolali, <email>ali.abdolali@noaa.gov</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Coastal and Offshore Engineering, a section of the journal Frontiers in Built Environment</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>01</day>
<month>07</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>8</volume>
<elocation-id>891612</elocation-id>
<history>
<date date-type="received">
<day>08</day>
<month>03</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>03</day>
<month>05</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Abdolali, Hesser, Anderson Bryant, Roland, Khalid, Smith, Ferreira, Mehra and Sikiric.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Abdolali, Hesser, Anderson Bryant, Roland, Khalid, Smith, Ferreira, Mehra and Sikiric</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Wave&#x2013;vegetation interaction is implemented in the WAVEWATCH III (WW3) model. The vegetation sink term followed the early formulations of Dalrymple et al. (Journal of Waterway, Port, Coastal, and Ocean Engineering, 1984, 110, 67&#x2013;79), which focused on monochromatic waves and vegetation approximated as an array of rigid, vertical cylinders, and was later expanded by Mendez and Losada (Coastal Engineering, 2004, 51, 103&#x2013;118) for random wave transformations over mildly sloping vegetation fields under breaking and nonbreaking conditions assuming a Rayleigh distribution of wave heights. First, validation is carried out for 63 laboratory cases (<xref ref-type="bibr" rid="B4">Anderson and Smith, 2014</xref>) with homogeneous vegetation fields for single and double-peak wave spectra. Then, a field case application is conducted to assess the wave attenuation in a wetland environment with spatially variable vegetation fields during stormy conditions. The case study uses data collected at the Magothy Bay located in the Chesapeake Bay, United States, during Hurricanes Jose and Maria in 2017. The domain decomposition parallelization and the implicit scheme have been used for the simulations to efficiently resolve complex shorelines and high-gradient wave zones, incorporating dominant physics in the complicated coastal zone, including wave breaking, wave&#x2013;current interaction, bottom friction and scattering, wave&#x2013;vegetation interaction, and nonlinearity (<xref ref-type="bibr" rid="B1">Abdolali et al., 2020</xref>). The lab validation and field application demonstrate that WW3 is an effective tool for evaluating the capacity of wetland natural or nature-based features to attenuate wave energy to achieve coastal flood risk reduction.</p>
</abstract>
<kwd-group>
<kwd>wave&#x2013;vegetation interaction</kwd>
<kwd>spectral wave model WAVEWATCH III</kwd>
<kwd>wetland hydrodynamics</kwd>
<kwd>hurricane</kwd>
<kwd>marshland</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>Wetlands are key natural and nature-based features used to dissipate wave energy and reduce flood risk. Historically, the operational practice to account for wave energy reduction due to wetland vegetation was through bottom friction sink terms implemented in nearshore wave models. The formulations most often applied use Manning&#x2019;s roughness coefficients <italic>n</italic>, which traditionally described bottom roughness in uniform flows for open channels and floodplains (<xref ref-type="bibr" rid="B13">Chow, 1959</xref>). These Manning&#x2019;s coefficients <italic>n</italic> account for spatial variations tied to local terrain and roughness, and many numerical studies, particularly those coupling phase-averaged wave models to hydrodynamic models such as the ADvanced CIRCulation model (ADCIRC), select Manning&#x2019;s <italic>n</italic> based on land-cover databases and standard hydraulic literature (<xref ref-type="bibr" rid="B17">Dietrich et al., 2011</xref>; <xref ref-type="bibr" rid="B10">Bender et al., 2013</xref>; <xref ref-type="bibr" rid="B22">Hope et al., 2013</xref>; <xref ref-type="bibr" rid="B25">Lawler et al., 2016</xref>; <xref ref-type="bibr" rid="B11">Bryant and Jensen, 2017</xref>). Controlled laboratory experiments continue to highlight the complexity of wave&#x2013;vegetation interactions, most notably the effect of vegetation properties such as rigidity, height, density, and diameter on wave attenuation (<xref ref-type="bibr" rid="B4">Anderson and Smith, 2014</xref>; <xref ref-type="bibr" rid="B33">Ozeren et al., 2014</xref>; <xref ref-type="bibr" rid="B28">Luhar et al., 2017</xref>; <xref ref-type="bibr" rid="B23">Jacobsen et al., 2019</xref>; <xref ref-type="bibr" rid="B34">Phan et al., 2019</xref>; <xref ref-type="bibr" rid="B41">van Veelen et al., 2020</xref>). These studies suggest there are key physics that Manning&#x2019;s <italic>n</italic> does not properly represent, such as the drag force exerted on the water column due to temporally and spatially varying immersed vegetation. These potential shortfalls of Manning&#x2019;s <italic>n</italic> led to the derivation and subsequent implementation of vegetation-dissipation sink terms in widely used nearshore wave models, such as WWM-III (<xref ref-type="bibr" rid="B35">Roland, 2008</xref>), SWAN (<xref ref-type="bibr" rid="B37">Suzuki et al., 2012</xref>), STWAVE (<xref ref-type="bibr" rid="B3">Anderson and Smith, 2015</xref>), and XBEACH (<xref ref-type="bibr" rid="B40">Van Rooijen et al., 2015</xref>). These vegetation-dissipation sink terms are a function of the local hydrodynamic conditions and account directly for measurable vegetation characteristics. Both <xref ref-type="bibr" rid="B36">Smith et al. (2016)</xref> and <xref ref-type="bibr" rid="B8">Baron-Hyppolite et al. (2019)</xref> reported an underestimation of wave dissipation using enhanced Manning&#x2019;s <italic>n</italic> to represent vegetation compared to vegetation-dissipation formulations that explicitly account for plant properties.</p>
<p>The fundamental formulation for wave dissipation through vegetation was derived by <xref ref-type="bibr" rid="B14">Dalrymple et al. (1984)</xref> for monochromatic waves using the conservation of energy flux equation, where the horizontal force <italic>F</italic>
<sub>
<italic>x</italic>
</sub> acting on the vegetation per unit volume is expressed in terms of a Morison-type equation neglecting swaying motion and inertial force:<disp-formula id="e1">
<mml:math id="m1">
<mml:msub>
<mml:mrow>
<mml:mi>F</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>x</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
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<mml:mn>1</mml:mn>
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</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mrow>
<mml:mi>b</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bd;</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mi>N</mml:mi>
<mml:mi>u</mml:mi>
<mml:mo stretchy="false">&#x7c;</mml:mo>
<mml:mi>u</mml:mi>
<mml:mo stretchy="false">&#x7c;</mml:mo>
</mml:math>
<label>(1)</label>
</disp-formula>where <italic>&#x3c1;</italic> is water density, <italic>C</italic>
<sub>
<italic>d</italic>
</sub> is the depth-averaged bulk drag coefficient, <italic>b</italic>
<sub>
<italic>v</italic>
</sub> is stem diameter, <italic>N</italic> is plant density (<italic>stems</italic>/<italic>m</italic>
<sup>2</sup>), and <italic>u</italic> is horizontal velocity due to wave motion.</p>
<p>Although plant motion is neglected, <xref ref-type="disp-formula" rid="e1">Eq. 1</xref> may still be applied to swaying plants because the bulk drag coefficient <italic>C</italic>
<sub>
<italic>d</italic>
</sub> accounts for our ignorance of plant motion, interactions between stems, and other unresolved processes. Indeed, <xref ref-type="bibr" rid="B31">Mendez et al. (1999)</xref> stated that using the relative velocity between the fluid and plant required a higher value of <italic>C</italic>
<sub>
<italic>d</italic>
</sub> to obtain the same amount of attenuation. <xref ref-type="bibr" rid="B30">Mendez and Losada (2004)</xref> expanded upon <xref ref-type="bibr" rid="B14">Dalrymple et al. (1984)</xref> and derived an analytical solution for random wave transformations over mildly sloped vegetation fields under breaking and nonbreaking conditions by assuming a Rayleigh distribution of wave heights. The modification by <xref ref-type="bibr" rid="B30">Mendez and Losada (2004)</xref> is incorporated into several phase-averaged nearshore wave models similar to <xref ref-type="bibr" rid="B37">Suzuki et al. (2012)</xref>, with verification largely focused on laboratory studies, albeit field applications are now gaining traction (<xref ref-type="bibr" rid="B20">Garzon et al., 2019</xref>). As an alternative to field surveys to collect vegetation properties, <xref ref-type="bibr" rid="B19">Figueroa-Alfaro et al. (2022)</xref> proposed a modified parameterization using a leaf area index-based measurement that can be readily derived from satellite imagery, but its application is limited to emergent vegetation. While these developments are advancing wave&#x2013;vegetation modeling, continued research into the drag coefficient <italic>C</italic>
<sub>
<italic>d</italic>
</sub>, which directly affects the dissipation rate, is critical given the growing concerns regarding its assumptions and derivations (<xref ref-type="bibr" rid="B39">Tempest et al., 2015</xref>).</p>
<p>This study is arranged as follows: a summary of the implementation of <xref ref-type="bibr" rid="B30">Mendez and Losada (2004)</xref> in WAVEWATCH III (WW3) is presented in <xref ref-type="sec" rid="s2">Section 2</xref>; <xref ref-type="sec" rid="s3">Section 3</xref> provides a brief overview of the validation studies using laboratory data of homogeneous vegetation fields and field case application with observations in Virginia during Hurricanes Jose and Maria in 2017; and concluding remarks are provided in <xref ref-type="sec" rid="s4">Section 4</xref>.</p>
</sec>
<sec id="s2">
<title>2 Formulation</title>
<p>In spectral wave models such as WW3, the waves are defined in terms of wave action density spectrum <italic>N</italic> (<italic>&#x3c3;</italic>, <italic>&#x3b8;</italic>) as a function of angular wave frequency and wave direction:<disp-formula id="e2">
<mml:math id="m2">
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
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<mml:mi>N</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mo>&#x2207;</mml:mo>
</mml:mrow>
<mml:mrow>
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<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>c</mml:mi>
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<mml:mi>g</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2b;</mml:mo>
<mml:mi mathvariant="bold">U</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mi>N</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
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<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
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<mml:mi>c</mml:mi>
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<mml:mrow>
<mml:mi>&#x3c3;</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mi>N</mml:mi>
<mml:mo>&#x2b;</mml:mo>
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<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
</mml:mrow>
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<mml:mi>&#x2202;</mml:mi>
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<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
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<mml:mi>N</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mi>S</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3c3;</mml:mi>
</mml:mrow>
</mml:mfrac>
</mml:math>
<label>(2)</label>
</disp-formula>where <italic>N</italic> (<italic>k</italic>, <italic>&#x3b8;</italic>) is the wave action density spectrum related to the wave energy density spectrum <italic>F</italic> (<italic>k</italic>, <italic>&#x3b8;</italic>), where <italic>N</italic> (<italic>k</italic>, <italic>&#x3b8;</italic>) &#x3d; <italic>F</italic> (<italic>k</italic>, <italic>&#x3b8;</italic>)/<italic>&#x3c3;</italic> and <italic>c</italic>
<sub>
<italic>g</italic>
</sub>, <bold>U</bold>, <italic>c</italic>
<sub>
<italic>&#x3c3;</italic>
</sub>, and <italic>c</italic>
<sub>
<italic>&#x3b8;</italic>
</sub> are the group velocity, the current velocity depth-time averaged over the scales of individual waves, propagation velocity in frequency <italic>&#x3c3;</italic>, and direction <italic>&#x3b8;</italic> spaces, respectively.</p>
<p>The terms on the left-hand side of <xref ref-type="disp-formula" rid="e2">Equation 2</xref> represent wave action density change in time, propagation in geographical space, shifting of the relative frequency due to changes in current and depth, and depth and current-induced refraction, respectively.</p>
<p>The energy density source term <italic>S</italic> is placed on the right-hand side of <xref ref-type="disp-formula" rid="e2">Eq. 2</xref> and accounts for generation (i.e., by wind), dissipation (i.e., whitecapping, bottom friction, depth induced breaking), and nonlinear wave&#x2013;wave interaction.</p>
<p>Without vegetation, wave energy flux remains constant if no energy is lost or gained. In the presence of vegetation, the wave energy flux, following <xref ref-type="bibr" rid="B14">Dalrymple et al. (1984)</xref>, <xref ref-type="bibr" rid="B24">Kobayashi et al. (1993)</xref>m and <xref ref-type="bibr" rid="B30">Mendez and Losada (2004)</xref> becomes<disp-formula id="e3">
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<mml:mrow>
<mml:mi>E</mml:mi>
<mml:mo>.</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>c</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>g</mml:mi>
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</mml:msub>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
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<mml:mi>&#x3bd;</mml:mi>
</mml:mrow>
</mml:msub>
</mml:math>
<label>(3)</label>
</disp-formula>where wave energy is defined as<disp-formula id="e4">
<mml:math id="m4">
<mml:mi>E</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
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</mml:mrow>
<mml:mrow>
<mml:mn>8</mml:mn>
</mml:mrow>
</mml:mfrac>
<mml:mi>&#x3c1;</mml:mi>
<mml:mi>g</mml:mi>
<mml:msup>
<mml:mrow>
<mml:mi>H</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msup>
</mml:math>
<label>(4)</label>
</disp-formula>and <italic>&#x3f5;</italic>
<sub>
<italic>&#x3bd;</italic>
</sub> is a function of the drag force <italic>F</italic>
<sub>
<italic>x</italic>
</sub> (<xref ref-type="disp-formula" rid="e1">Equation 1</xref>) integrated over the height of the vegetation<disp-formula id="e5">
<mml:math id="m5">
<mml:msub>
<mml:mrow>
<mml:mi>&#x3f5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bd;</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:msubsup>
<mml:mrow>
<mml:mo>&#x222b;</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>h</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:mi>h</mml:mi>
<mml:mo>&#x2b;</mml:mo>
<mml:mi>&#x3b1;</mml:mi>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:msub>
<mml:mrow>
<mml:mi>F</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>x</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mi>u</mml:mi>
<mml:mi>d</mml:mi>
<mml:mi>z</mml:mi>
</mml:mrow>
<mml:mo>&#x304;</mml:mo>
</mml:mover>
</mml:mrow>
</mml:math>
<label>(5)</label>
</disp-formula>
</p>
<p>Assuming linear wave theory is valid to calculate <italic>u</italic>, the horizontal velocity due to wave motion, the mean rate of energy dissipation per unit horizontal area <italic>&#x3f5;</italic>
<sub>
<italic>&#x3bd;</italic>
</sub> due to wave damping by vegetation becomes<disp-formula id="e6">
<mml:math id="m6">
<mml:msub>
<mml:mrow>
<mml:mi>&#x3f5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bd;</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
<mml:msqrt>
<mml:mrow>
<mml:mi>&#x3c0;</mml:mi>
</mml:mrow>
</mml:msqrt>
</mml:mrow>
</mml:mfrac>
<mml:mi>&#x3c1;</mml:mi>
<mml:msub>
<mml:mrow>
<mml:mi>C</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>d</mml:mi>
</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mrow>
<mml:mi>b</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bd;</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mi>N</mml:mi>
<mml:msup>
<mml:mrow>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>g</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
<mml:mi>&#x3c3;</mml:mi>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mfrac>
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mi>sinh</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>&#x3b1;</mml:mi>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x2b;</mml:mo>
<mml:mn>3</mml:mn>
<mml:mo>&#x2061;</mml:mo>
<mml:mi>sinh</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>&#x3b1;</mml:mi>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
<mml:mi>k</mml:mi>
<mml:mo>&#x2061;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mi>cosh</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
</mml:mfrac>
<mml:msubsup>
<mml:mrow>
<mml:mi>H</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>m</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
<label>(6)</label>
</disp-formula>where <italic>k</italic> is wave number, <italic>&#x3b1;</italic> is the ratio of plant height <italic>l</italic>
<sub>
<italic>s</italic>
</sub> to water depth <italic>h</italic> (<italic>L</italic>
<sub>
<italic>s</italic>
</sub>/<italic>h</italic>), and <italic>H</italic>
<sub>
<italic>rms</italic>
</sub> is root mean square wave height.</p>
<p>Combining <xref ref-type="disp-formula" rid="e3">Eqs (3)</xref>&#x2013;<xref ref-type="disp-formula" rid="e6">(6</xref>),<disp-formula id="e7">
<mml:math id="m7">
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:msubsup>
<mml:mrow>
<mml:mi>H</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>m</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x2202;</mml:mi>
<mml:mi>x</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mo>&#x2212;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3f5;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bd;</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mn>8</mml:mn>
</mml:mrow>
</mml:mfrac>
<mml:mi>&#x3c1;</mml:mi>
<mml:mi>g</mml:mi>
<mml:msub>
<mml:mrow>
<mml:mi>c</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>g</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
<mml:msqrt>
<mml:mrow>
<mml:mi>&#x3c0;</mml:mi>
</mml:mrow>
</mml:msqrt>
</mml:mrow>
</mml:mfrac>
<mml:msub>
<mml:mrow>
<mml:mi>C</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>d</mml:mi>
</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mrow>
<mml:mi>b</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bd;</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mi>N</mml:mi>
<mml:mi>k</mml:mi>
<mml:mfrac>
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mi>sinh</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>&#x3b1;</mml:mi>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x2b;</mml:mo>
<mml:mn>3</mml:mn>
<mml:mo>&#x2061;</mml:mo>
<mml:mi>sinh</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>&#x3b1;</mml:mi>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mfenced open="[" close="]">
<mml:mrow>
<mml:mi>sinh</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mn>2</mml:mn>
<mml:mi>k</mml:mi>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x2b;</mml:mo>
<mml:mn>2</mml:mn>
<mml:mi>k</mml:mi>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mi>sinh</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
</mml:mfrac>
<mml:msubsup>
<mml:mrow>
<mml:mi>H</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>m</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
<label>(7)</label>
</disp-formula>
</p>
<p>A spectral version implemented in WW3 is divided by &#x2212; <italic>&#x3c1;g</italic> and written in a spectral/directional form:<disp-formula id="e8">
<mml:math id="m8">
<mml:msub>
<mml:mrow>
<mml:mi>S</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>v</mml:mi>
<mml:mi>e</mml:mi>
<mml:mi>g</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c3;</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>D</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mi>o</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>E</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mi>o</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
<mml:mi>E</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>&#x3c3;</mml:mi>
<mml:mo>,</mml:mo>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:math>
<label>(8)</label>
</disp-formula>
<disp-formula id="e9">
<mml:math id="m9">
<mml:msub>
<mml:mrow>
<mml:mi>D</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mi>o</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mo>&#x2212;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
<mml:mi>g</mml:mi>
<mml:msqrt>
<mml:mrow>
<mml:mi>&#x3c0;</mml:mi>
</mml:mrow>
</mml:msqrt>
</mml:mrow>
</mml:mfrac>
<mml:mspace width="0.3333em"/>
<mml:msub>
<mml:mrow>
<mml:mi>C</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>d</mml:mi>
</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mrow>
<mml:mi>b</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bd;</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mi>N</mml:mi>
<mml:msup>
<mml:mrow>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>k</mml:mi>
</mml:mrow>
<mml:mo>&#x304;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mi>g</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3c3;</mml:mi>
</mml:mrow>
<mml:mo>&#x304;</mml:mo>
</mml:mover>
</mml:mrow>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mfrac>
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mi>sinh</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>k</mml:mi>
</mml:mrow>
<mml:mo>&#x304;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x2b;</mml:mo>
<mml:mn>3</mml:mn>
<mml:mo>&#x2061;</mml:mo>
<mml:mi>sinh</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>k</mml:mi>
</mml:mrow>
<mml:mo>&#x304;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>k</mml:mi>
</mml:mrow>
<mml:mo>&#x304;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mi>cosh</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msup>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>k</mml:mi>
</mml:mrow>
<mml:mo>&#x304;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
</mml:mfrac>
<mml:msubsup>
<mml:mrow>
<mml:mi>H</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>r</mml:mi>
<mml:mi>m</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msubsup>
</mml:math>
<label>(9)</label>
</disp-formula>where the mean frequency <inline-formula id="inf1">
<mml:math id="m10">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3c3;</mml:mi>
</mml:mrow>
<mml:mo>&#x304;</mml:mo>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula>, mean wave number <inline-formula id="inf2">
<mml:math id="m11">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>k</mml:mi>
</mml:mrow>
<mml:mo>&#x304;</mml:mo>
</mml:mover>
</mml:mrow>
</mml:math>
</inline-formula>, and total wave energy <italic>E</italic>
<sub>
<italic>tot</italic>
</sub> are given by<disp-formula id="e10">
<mml:math id="m12">
<mml:mrow>
<mml:mover accent="true">
<mml:mrow>
<mml:mi>&#x3c3;</mml:mi>
</mml:mrow>
<mml:mo>&#x304;</mml:mo>
</mml:mover>
</mml:mrow>
<mml:mo>&#x3d;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>E</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>t</mml:mi>
<mml:mi>o</mml:mi>
<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
<mml:msubsup>
<mml:mrow>
<mml:mo>&#x222b;</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mn>0</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
<mml:mi>&#x3c0;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:msubsup>
<mml:mrow>
<mml:mo>&#x222b;</mml:mo>
</mml:mrow>
<mml:mrow>
<mml:mn>0</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x221e;</mml:mi>
</mml:mrow>
</mml:msubsup>
<mml:mfrac>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3c3;</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mi>E</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
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</p>
<p>Finally, substituting <inline-formula id="inf3">
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<mml:mi>t</mml:mi>
</mml:mrow>
</mml:msub>
</mml:math>
</inline-formula>, the wave&#x2013;vegetation sink term becomes (<xref ref-type="bibr" rid="B37">Suzuki et al., 2012</xref>)<disp-formula id="e13">
<mml:math id="m16">
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<label>(13)</label>
</disp-formula>
</p>
<p>Although not currently in WW3, the spectral wave&#x2013;vegetation sink term formulated by <xref ref-type="bibr" rid="B37">Suzuki et al. (2012)</xref> may consider different densities and stem widths between trunks and roots (i.e., mangrove trees) by considering layer schematization. Recent developments by <xref ref-type="bibr" rid="B14">Dalrymple et al. (1984)</xref> and <xref ref-type="bibr" rid="B30">Mendez and Losada (2004)</xref> include implementation into mild slope equation models (<xref ref-type="bibr" rid="B38">Tang et al., 2015</xref>) and the incorporation of wave&#x2013;current interactions for both following and opposing currents (<xref ref-type="bibr" rid="B26">Losada et al., 2016</xref>).</p>
</sec>
<sec id="s3">
<title>3 Validation</title>
<p>After implementing the vegetation sink term in WW3, we verified for idealized laboratory experiments, consisting of 63 cases with homogeneous vegetation fields. Then, we progressed to the large-scale field test case for Hurricanes Jose and Maria (2017).</p>
<sec id="s3-1">
<title>3.1 Laboratory Experiments (<xref ref-type="bibr" rid="B4">Anderson and Smith, 2014</xref>)</title>
<p>The Anderson and Smith&#xa0;(2014) experiments were performed at the U.S. Army Engineer Research and Development Center in Vicksburg, Mississippi, in a 63.4 m long, 1.5 m wide, and 1.5 m deep wave flume equipped with a piston-type wave-maker (<xref ref-type="fig" rid="F1">Figure 1</xref>). A 9.8 m long vegetation zone, populated with idealized <italic>Spartina alterniflora</italic> vegetation, was located 29.3 m from the wave-maker. The idealized vegetation was constructed of <italic>b</italic>
<sub>
<italic>v</italic>
</sub> &#x3d; 6.4&#xa0;mm diameter and <italic>l</italic>
<sub>
<italic>s</italic>
</sub> &#x3d; 41.5&#xa0;cm tall flexible polyolefin tubing considering two stem densities of <italic>N</italic> &#x3d; 200 and 400 stems/m<sup>2</sup> (corresponding to an element spacing of 7.1 and 5&#xa0;cm, respectively). Given the inherent complexities live vegetation introduces to the laboratory, Anderson and Smith&#xa0;(2014) selected polyolefin tubing similar in dimension and rigidity to <italic>Spartina alterniflora</italic> measured along the Louisiana coast (<xref ref-type="bibr" rid="B12">Chatagnier, 2012</xref>) in order to best approximate biomechanical properties of the real vegetation. The water depths of the experiments were <italic>h</italic> &#x3d; 30.5, 45.7, and 53.3 cm, simulating both submerged (<italic>l</italic>
<sub>
<italic>s</italic>
</sub>/<italic>h</italic> &#x3d; 0.78, 0.91) and emergent (<italic>l</italic>
<sub>
<italic>s</italic>
</sub>/<italic>h</italic> &#x3d; 1.0) conditions. The periods and significant wave heights for the the incident irregular waves with single- and double-peak periods vary between <italic>T</italic>
<sub>
<italic>p</italic>
</sub> &#x3d; 1.25&#x2013;2.25 s and <italic>H</italic>
<sub>
<italic>m</italic>0</sub> &#x3d; 5&#x2013;19.2&#xa0;cm, respectively. Wave attenuation by the vegetation was assessed relative to a bare control run (no vegetation) for each wave condition. A summary of the wave conditions tested by Anderson and Smith&#xa0;(2014) for each vegetation density is provided in <xref ref-type="table" rid="T1">Table 1</xref>.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>
<bold>(A)</bold> Schematic view of <xref ref-type="bibr" rid="B4">Anderson and Smith (2014)</xref> wave flume. <bold>(B)</bold> Single-peak and double-peak spectral density data for boundary forcing at the wave-maker in the flume and numerical model (red dot in panel (a)). <bold>(C)</bold> Installed idealized vegetation (vegetation height <italic>l</italic>
<sub>
<italic>s</italic>
</sub> and vegetation thickness <italic>b</italic>
<sub>
<italic>v</italic>
</sub>).</p>
</caption>
<graphic xlink:href="fbuil-08-891612-g001.tif"/>
</fig>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Wave condition at the beginning of vegetation zone (5th gauge from wave-maker).</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Case</th>
<th align="center">Wave type</th>
<th align="center">
<italic>h</italic> (m)</th>
<th align="center">
<italic>H</italic>
<sub>0</sub> (cm)</th>
<th align="center">
<italic>T</italic>
<sub>
<italic>p</italic>
</sub> (s)</th>
<th align="center">
<italic>&#x3bb;</italic>
<sub>
<italic>p</italic>
</sub> (m)</th>
<th align="center">
<italic>l</italic>
<sub>
<italic>s</italic>
</sub>/<italic>h</italic>
</th>
<th align="center">
<italic>H</italic>
<sub>0</sub>/<italic>h</italic>
</th>
<th align="center">
<italic>h</italic>/<italic>&#x3bb;</italic>
<sub>
<italic>p</italic>
</sub>
</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">1</td>
<td align="left">Single peak</td>
<td align="char" char=".">53.3</td>
<td align="char" char="plusmn">11.1 &#xb1; 0.07</td>
<td align="center">1.5</td>
<td align="char" char=".">2.89</td>
<td align="char" char=".">0.78</td>
<td align="char" char=".">0.21</td>
<td align="char" char=".">0.18</td>
</tr>
<tr>
<td align="left">2</td>
<td align="left"/>
<td align="char" char=".">53.3</td>
<td align="char" char="plusmn">11.0 &#xb1; 0.10</td>
<td align="center">1.75</td>
<td align="char" char=".">3.53</td>
<td align="char" char=".">0.78</td>
<td align="char" char=".">0.21</td>
<td align="char" char=".">0.15</td>
</tr>
<tr>
<td align="left">3</td>
<td align="left"/>
<td align="char" char=".">53.3</td>
<td align="char" char="plusmn">11.2 &#xb1; 0.06</td>
<td align="center">2.0</td>
<td align="char" char=".">4.16</td>
<td align="char" char=".">0.78</td>
<td align="char" char=".">0.21</td>
<td align="char" char=".">0.13</td>
</tr>
<tr>
<td align="left">4</td>
<td align="left"/>
<td align="char" char=".">45.7</td>
<td align="char" char="plusmn">8.1 &#xb1; 0.03</td>
<td align="center">1.5</td>
<td align="char" char=".">2.74</td>
<td align="char" char=".">0.91</td>
<td align="char" char=".">0.18</td>
<td align="char" char=".">0.17</td>
</tr>
<tr>
<td align="left">5</td>
<td align="left"/>
<td align="char" char=".">45.7</td>
<td align="char" char="plusmn">10.9 &#xb1; 0.05</td>
<td align="center">1.5</td>
<td align="char" char=".">2.74</td>
<td align="char" char=".">0.91</td>
<td align="char" char=".">0.24</td>
<td align="char" char=".">0.17</td>
</tr>
<tr>
<td align="left">6</td>
<td align="left"/>
<td align="char" char=".">45.7</td>
<td align="char" char="plusmn">13.9 &#xb1; 0.07</td>
<td align="center">1.5</td>
<td align="char" char=".">2.74</td>
<td align="char" char=".">0.91</td>
<td align="char" char=".">0.30</td>
<td align="char" char=".">0.17</td>
</tr>
<tr>
<td align="left">7</td>
<td align="left"/>
<td align="char" char=".">45.7</td>
<td align="char" char="plusmn">5.0 &#xb1; 0.03</td>
<td align="center">2.0</td>
<td align="char" char=".">3.91</td>
<td align="char" char=".">0.91</td>
<td align="char" char=".">0.11</td>
<td align="char" char=".">0.12</td>
</tr>
<tr>
<td align="left">8</td>
<td align="left"/>
<td align="char" char=".">45.7</td>
<td align="char" char="plusmn">10.7 &#xb1; 0.04</td>
<td align="center">2.0</td>
<td align="char" char=".">3.91</td>
<td align="char" char=".">0.91</td>
<td align="char" char=".">0.23</td>
<td align="char" char=".">0.12</td>
</tr>
<tr>
<td align="left">9</td>
<td align="left"/>
<td align="char" char=".">45.7</td>
<td align="char" char="plusmn">15.3 &#xb1; 0.10</td>
<td align="center">2.0</td>
<td align="char" char=".">3.91</td>
<td align="char" char=".">0.91</td>
<td align="char" char=".">0.33</td>
<td align="char" char=".">0.12</td>
</tr>
<tr>
<td align="left">10</td>
<td align="left"/>
<td align="char" char=".">45.7</td>
<td align="char" char="plusmn">19.2 &#xb1; 0.14</td>
<td align="center">2.0</td>
<td align="char" char=".">3.91</td>
<td align="char" char=".">0.91</td>
<td align="char" char=".">0.42</td>
<td align="char" char=".">0.12</td>
</tr>
<tr>
<td align="left">11</td>
<td align="left"/>
<td align="char" char=".">30.5</td>
<td align="char" char="plusmn">11.3 &#xb1; 0.09</td>
<td align="center">1.25</td>
<td align="char" char=".">2.88</td>
<td align="char" char=".">1.36</td>
<td align="char" char=".">0.37</td>
<td align="char" char=".">0.16</td>
</tr>
<tr>
<td align="left">12</td>
<td align="left"/>
<td align="char" char=".">30.5</td>
<td align="char" char="plusmn">11.0 &#xb1; 0.11</td>
<td align="center">1.5</td>
<td align="char" char=".">2.36</td>
<td align="char" char=".">1.36</td>
<td align="char" char=".">0.36</td>
<td align="char" char=".">0.13</td>
</tr>
<tr>
<td align="left">13</td>
<td align="left"/>
<td align="char" char=".">30.5</td>
<td align="char" char="plusmn">11.2 &#xb1; 0.10</td>
<td align="center">1.75</td>
<td align="char" char=".">2.82</td>
<td align="char" char=".">1.36</td>
<td align="char" char=".">0.37</td>
<td align="char" char=".">0.11</td>
</tr>
<tr>
<td align="left">14</td>
<td align="left"/>
<td align="char" char=".">30.5</td>
<td align="char" char="plusmn">11.1 &#xb1; 0.16</td>
<td align="center">2.0</td>
<td align="char" char=".">3.28</td>
<td align="char" char=".">1.36</td>
<td align="char" char=".">0.36</td>
<td align="char" char=".">0.09</td>
</tr>
<tr>
<td align="left">15</td>
<td align="left"/>
<td align="char" char=".">30.5</td>
<td align="char" char="plusmn">11.2 &#xb1; 0.13</td>
<td align="center">2.25</td>
<td align="char" char=".">3.73</td>
<td align="char" char=".">1.36</td>
<td align="char" char=".">0.37</td>
<td align="char" char=".">0.08</td>
</tr>
<tr>
<td align="left">16</td>
<td align="left">Double peaks</td>
<td align="char" char=".">53.3</td>
<td align="char" char="plusmn">13.7 &#xb1; 0.04</td>
<td align="center">1.25/2.0</td>
<td align="center">-</td>
<td align="char" char=".">0.78</td>
<td align="char" char=".">0.26</td>
<td align="center">-</td>
</tr>
<tr>
<td align="left">17</td>
<td align="left"/>
<td align="char" char=".">53.3</td>
<td align="char" char="plusmn">10.9 &#xb1; 0.03</td>
<td align="center">1.25/2.0</td>
<td align="center">-</td>
<td align="char" char=".">0.78</td>
<td align="char" char=".">0.20</td>
<td align="center">-</td>
</tr>
<tr>
<td align="left">18</td>
<td align="left"/>
<td align="char" char=".">45.7</td>
<td align="char" char="plusmn">13.6 &#xb1; 0.04</td>
<td align="center">1.25/2.0</td>
<td align="center">-</td>
<td align="char" char=".">0.91</td>
<td align="char" char=".">0.30</td>
<td align="center">-</td>
</tr>
<tr>
<td align="left">19</td>
<td align="left"/>
<td align="char" char=".">45.7</td>
<td align="char" char="plusmn">10.7 &#xb1; 0.05</td>
<td align="center">1.25/2.0</td>
<td align="center">-</td>
<td align="char" char=".">0.91</td>
<td align="char" char=".">0.23</td>
<td align="center">-</td>
</tr>
<tr>
<td align="left">20</td>
<td align="left"/>
<td align="char" char=".">30.5</td>
<td align="char" char="plusmn">13.0 &#xb1; 0.18</td>
<td align="center">1.25/2.0</td>
<td align="center">-</td>
<td align="char" char=".">1.36</td>
<td align="char" char=".">0.43</td>
<td align="center">-</td>
</tr>
<tr>
<td align="left">21</td>
<td align="left"/>
<td align="char" char=".">30.5</td>
<td align="char" char="plusmn">10.7 &#xb1; 0.14</td>
<td align="center">1.25/2.0</td>
<td align="center">-</td>
<td align="char" char=".">1.36</td>
<td align="char" char=".">0.35</td>
<td align="center">-</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>The bulk drag coefficient (<italic>C</italic>
<sub>
<italic>d</italic>
</sub>) is a function of wave parameters and vegetation species/characteristics. The relationship between <italic>C</italic>
<sub>
<italic>d</italic>
</sub> and flow parameters is given by<disp-formula id="e14">
<mml:math id="m20">
<mml:msub>
<mml:mrow>
<mml:mi>C</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>d</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>e</mml:mi>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2b;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>e</mml:mi>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b1;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msup>
</mml:math>
<label>(14)</label>
</disp-formula>
</p>
<p>for flow characteristics defined by Reynolds number:<disp-formula id="e15">
<mml:math id="m21">
<mml:mi>R</mml:mi>
<mml:mi>e</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>u</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>c</mml:mi>
</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mrow>
<mml:mi>b</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>v</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bd;</mml:mi>
</mml:mrow>
</mml:mfrac>
</mml:math>
<label>(15)</label>
</disp-formula>where <italic>&#x3bd;</italic> &#x3d; 10<sup>&#x2013;6</sup>&#xa0;m<sup>2</sup>/s is kinematic viscosity of water and <italic>u</italic>
<sub>
<italic>c</italic>
</sub> is the characteristic velocity acting on the plant. The characteristic velocity is defined here as the maximum horizontal velocity immediately in the front of the vegetation field as shown by red circle in <xref ref-type="fig" rid="F1">Figure 1</xref>:<disp-formula id="e16">
<mml:math id="m22">
<mml:msub>
<mml:mrow>
<mml:mi>u</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi mathvariant="italic">max</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mi>&#x3c3;</mml:mi>
<mml:mi>a</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>tanh</mml:mi>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mi>k</mml:mi>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
</mml:mfrac>
</mml:math>
<label>(16)</label>
</disp-formula>where <italic>H</italic>
<sub>
<italic>s</italic>
</sub> and <italic>T</italic>
<sub>
<italic>p</italic>
</sub> correspond to monochromatic wave train characteristics and the depth is <italic>z</italic> &#x3d; <italic>h</italic> (1 &#x2212; <italic>&#x3b1;</italic>). The Keulegan&#x2013;Carpenter number is a dimensionless number that describes the relative importance of the drag force over inertia for a vertical obstacle in an oscillating flow:<disp-formula id="e17">
<mml:math id="m23">
<mml:mi>K</mml:mi>
<mml:mi>C</mml:mi>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>u</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi mathvariant="italic">max</mml:mi>
</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mrow>
<mml:mi>T</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>p</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>b</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>&#x3bd;</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:math>
<label>(17)</label>
</disp-formula>
</p>
<p>The relation between <italic>C</italic>
<sub>
<italic>d</italic>
</sub> and <italic>KC</italic> number is evaluated based on experiments.</p>
<p>Following <xref ref-type="bibr" rid="B24">Kobayashi et al. (1993)</xref> and <xref ref-type="bibr" rid="B30">Mendez and Losada (2004)</xref> and considering the correction due to the canopy submergence (<italic>Ls</italic>/<italic>h</italic>), the empirical relationship between <italic>C</italic>
<sub>
<italic>d</italic>
</sub> and the nondimensional numbers <italic>Q</italic>
<sub>
<italic>Re</italic>
</sub> and <italic>Q</italic>
<sub>
<italic>KC</italic>
</sub> is shown in <xref ref-type="fig" rid="F2">Figure 2</xref> and given by<disp-formula id="e18">
<mml:math id="m24">
<mml:msub>
<mml:mrow>
<mml:mi>C</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>d</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>Q</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>e</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2b;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>Q</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>e</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3b8;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msup>
<mml:mo>;</mml:mo>
<mml:mspace width="0.3333em"/>
<mml:mspace width="0.3333em"/>
<mml:msub>
<mml:mrow>
<mml:mi>C</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>d</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>Q</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>K</mml:mi>
<mml:mi>C</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfenced>
<mml:mo>&#x3d;</mml:mo>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3bb;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo>&#x2b;</mml:mo>
<mml:msup>
<mml:mrow>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:mfrac>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3bb;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>2</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>Q</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>K</mml:mi>
<mml:mi>C</mml:mi>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:mfrac>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>&#x3bb;</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mn>3</mml:mn>
</mml:mrow>
</mml:msub>
</mml:mrow>
</mml:msup>
</mml:math>
<label>(18)</label>
</disp-formula>where [<italic>&#x3b8;</italic>
<sub>1</sub>, <italic>&#x3b8;</italic>
<sub>2</sub>, <italic>&#x3b8;</italic>
<sub>3</sub>] &#x3d; [ &#x2212; 0.22, 765.11, 0.67], [<italic>&#x3bb;</italic>
<sub>1</sub>, <italic>&#x3bb;</italic>
<sub>2</sub>, <italic>&#x3bb;</italic>
<sub>3</sub>] &#x3d; [0.25, 24.87, 2.15], and<disp-formula id="e19">
<mml:math id="m25">
<mml:msub>
<mml:mrow>
<mml:mi>Q</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>e</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mi>R</mml:mi>
<mml:mi>e</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>l</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>/</mml:mo>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mn>1.5</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:mfrac>
<mml:mo>;</mml:mo>
<mml:mspace width="0.3333em"/>
<mml:mspace width="0.3333em"/>
<mml:msub>
<mml:mrow>
<mml:mi>Q</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>K</mml:mi>
<mml:mi>C</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>&#x3d;</mml:mo>
<mml:mfrac>
<mml:mrow>
<mml:mi>K</mml:mi>
<mml:mi>C</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:msup>
<mml:mrow>
<mml:mfenced open="(" close=")">
<mml:mrow>
<mml:msub>
<mml:mrow>
<mml:mi>l</mml:mi>
</mml:mrow>
<mml:mrow>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:msub>
<mml:mo>/</mml:mo>
<mml:mi>h</mml:mi>
</mml:mrow>
</mml:mfenced>
</mml:mrow>
<mml:mrow>
<mml:mn>1.5</mml:mn>
</mml:mrow>
</mml:msup>
</mml:mrow>
</mml:mfrac>
</mml:math>
<label>(19)</label>
</disp-formula>
</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Bulk drag coefficient <italic>C</italic>
<sub>
<italic>d</italic>
</sub> as a function of (left) modified stem Reynolds number <italic>Q</italic>
<sub>
<italic>Re</italic>
</sub> and (right) modified Keulegan&#x2013;Carpenter number <italic>Q</italic>
<sub>
<italic>KC</italic>
</sub> accounting for stem submergence ratio for <xref ref-type="bibr" rid="B4">Anderson and Smith (2014)</xref> dataset. Different symbols represent different values of <italic>l</italic>
<sub>
<italic>s</italic>
</sub>/<italic>h</italic>.</p>
</caption>
<graphic xlink:href="fbuil-08-891612-g002.tif"/>
</fig>
<p>The results are shown in <xref ref-type="fig" rid="F3">Figure 3</xref> for two-single-peak (<italic>&#x23;</italic>6 and <italic>&#x23;</italic>12) and two-double-peak (<italic>&#x23;</italic>17 and <italic>&#x23;</italic>21) wave spectra. The spectra density observed at the 5th gauge in the flume and the corresponding forcing boundary condition at the WW3 wave-maker are shown in the upper panels. The time series of the significant wave heights extracted from the model (solid) is compared with the observations (dashed), shown in the lower panels for no vegetation (black), <italic>N</italic> &#x3d; 200 (blue) and <italic>N</italic> &#x3d; 400 stems/m<sup>2</sup> (black). The outputs of the model show a good agreement with the laboratory measurement for the wave attenuation due to wave&#x2013;vegetation as a function of distance from the wave-maker.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Upper panels) Spectral density for single-peak <bold>(A,B)</bold> and double-peak <bold>(C,D)</bold> waves at the 5<sup>
<italic>th</italic>
</sup> gauge in the flume (black circles) and boundary forcing in the WW3 model (solid blue). The dashed red lines show the peak(s). (Lower panels) Significant wave height observed in the lab (circles) and from the WW3 model (solid) for no vegetation (black), <italic>N</italic> &#x3d;200 stems/m<sup>2</sup> (blue) and <italic>N</italic> &#x3d;400 stems/m<sup>2</sup> (black). Wave conditions for Cases 6 <bold>(A)</bold>, 12 <bold>(B)</bold>, 17 <bold>(C)</bold>, and 21 <bold>(D)</bold> are provided in <xref ref-type="table" rid="T1">Table 1</xref>.</p>
</caption>
<graphic xlink:href="fbuil-08-891612-g003.tif"/>
</fig>
<p>The sensitivity of the model to vegetation characteristics (normalized by the observed values, for Case 1 from <xref ref-type="table" rid="T1">Table 1</xref>, <italic>C</italic>
<sub>
<italic>d</italic>
</sub> &#x3d; 0.369, <italic>b</italic>
<sub>
<italic>v</italic>
</sub> &#x3d; 0.0064&#xa0;m, <italic>l</italic>
<sub>
<italic>s</italic>
</sub> &#x3d; 0.415&#xa0;m, and <italic>N</italic> &#x3d; 400 stem/m<sup>2</sup>) is investigated in terms of mean error normalized by the significant wave height value at the 5th gauge (<italic>H</italic>
<sub>0</sub> &#x3d; 11.1&#xa0;cm). As is shown in <xref ref-type="fig" rid="F4">Figure 4</xref> and <xref ref-type="disp-formula" rid="e13">Eq. 13</xref>, the model sensitivity to stem density and drag coefficient is linear. On the contrary and for stem diameter (<italic>b</italic>
<sub>
<italic>v</italic>
</sub>), the drag coefficient (<italic>C</italic>
<sub>
<italic>d</italic>
</sub>) is a function of <italic>b</italic>
<sub>
<italic>v</italic>
</sub> (<xref ref-type="disp-formula" rid="e17">Eq. 17</xref>). Therefore, the error varies non-linearly with respect to changes in step diameter. Similarly, for step height (<italic>L</italic>
<sub>
<italic>s</italic>
</sub>), the drag coefficient (<italic>C</italic>
<sub>
<italic>d</italic>
</sub>) is a function of <italic>l</italic>
<sub>
<italic>s</italic>
</sub> (<xref ref-type="disp-formula" rid="e19">Eq. 19</xref>) and the parameter is in the sin term (<xref ref-type="disp-formula" rid="e13">Eq. 13</xref>). Overall, the wave attenuation due to vegetation is less sensitive to step height. The role of stem diameter is more important than other parameters.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Sensitivity of the model to vegetation characteristics (<italic>C</italic>
<sub>
<italic>d</italic>
</sub>, <italic>b</italic>
<sub>
<italic>v</italic>
</sub>, <italic>l</italic>
<sub>
<italic>s</italic>
</sub>, and <italic>N</italic>, normalized by the observed values) for Case 1 (see <xref ref-type="table" rid="T1">Table 1</xref>) in terms of mean error normalized by the significant wave height value at the 5th gauge.</p>
</caption>
<graphic xlink:href="fbuil-08-891612-g004.tif"/>
</fig>
</sec>
<sec id="s3-2">
<title>3.2 Field Case (September 17&#x2013;30, 2017)</title>
<p>A field case study was performed using data collected in Magothy Bay, located in Northampton County, Virginia, United States. The Magothy Bay Natural Area Preserve encompasses woodlands, forested wetlands, and extensive salt marshes. The location of the study area (A) is shown in <xref ref-type="fig" rid="F5">Figure 5</xref>. Eight low-frequency water level gauges and eight high-frequency (4&#xa0;Hz) wave gauges were deployed along two transects, as shown in box B. The transects are perpendicular to the coastline. The first gauges on each transect are deployed bayward of the marsh; therefore, they remain submerged and measure the entire tidal cycles. On each transect, three more water levels and three wave gauges were on the marsh surface, so they become wet during high tides or in stormy conditions. The vegetation characteristics, including stem height, density, and diameter, were measured across the marsh in a field campaign led by George Mason University. <xref ref-type="fig" rid="F6">Figure 6</xref> shows vegetation sampling, including height, density, and diameter. Additional details on the field data collection can be found in <xref ref-type="bibr" rid="B20">Garzon et al. (2019)</xref>. We have selected hurricanes Jose and Maria (2017) to verify the wave&#x2013;vegetation sink term implementation in the WW3 model due to the availability of observations and atmospheric forcing and proximity of hurricane tracks to the study area.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Numerical domain extent for the east coast of the United States. The black line shows the open boundaries. The best tracks with time tags of hurricanes Maria and Jose (2017) are shown by magenta and green lines, respectively. The zoom-in windows in Magothy Bay and the locations of wave and water level gauges are shown in the left-hand side panels.</p>
</caption>
<graphic xlink:href="fbuil-08-891612-g005.tif"/>
</fig>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>Field measurements for vegetation sampling <bold>(A)</bold> and wave and water level gauges deployment/survey <bold>(B)</bold>. Spatial distribution of vegetation height <bold>(C)</bold>, vegetation density <bold>(D),</bold> and stem diameters <bold>(E)</bold> in Magothy Bay.</p>
</caption>
<graphic xlink:href="fbuil-08-891612-g006.tif"/>
</fig>
<sec id="s3-2-1">
<title>3.2.1 Hurricane Jose (5&#x2013;22 September 2017)</title>
<p>On 5 September, a week after the genesis of a tropical wave near the west coast of Africa, Jose developed into a tropical storm. Jose was a classic, long-lived Cape Verde hurricane that reached Category 4 strength (on the Saffir&#x2013;Simpson Hurricane Wind Scale) east of the Leeward Islands on 8 September, but fortunately, it spared the Irma-ravaged islands of the northeastern Caribbean Sea. Jose made a clockwise loop over the southwestern Atlantic and then meandered off the coast of New England as a tropical storm for several days. Jose produced tropical-storm-force winds and minor coastal flooding along portions of the mid-Atlantic and southern New England coastline. Jose was directly responsible for one death, with damage of $2.84&#xa0;million (2017 USD). It was the 10th named storm, fifth hurricane, and third major hurricane of the 2017 Atlantic hurricane season.</p>
</sec>
<sec id="s3-2-2">
<title>3.2.2 Hurricane Maria (16&#x2013;30 September 2017)</title>
<p>On 12 September, a Cape Verde tropical wave later named Hurricane Maria was generated on the west coast of Africa, swept westward over the Atlantic, and formed a tropical depression about 580 nautical miles east of Barbados on 16 September (49.7&#xb0;W, 12.2&#xb0;N), reaching Category 5 intensity (Saffir&#x2013;Simpson Hurricane Wind Scale) just before making landfall on Dominica on 18 September and high-end Category 4 hurricane by the time it struck Puerto Rico on 20 September. Maria gradually weakened over the Bahamas, swept eastward over the open Atlantic, and dissipated by 2 October. Maria was directly responsible for 3,059 deaths and indirectly responsible for further 82 fatalities, with damage of $91.61&#xa0;billion (2017 USD), mostly in Puerto Rico. Maria was the most intense tropical cyclone worldwide in 2017, the 13th named storm, 8th consecutive hurricane, 4th major hurricane, 2nd Category 5 hurricane, and deadliest storm of the extremely active 2017 Atlantic hurricane season. The best tracks of the Jose and Maria path are given in <xref ref-type="fig" rid="F5">Figure 5</xref>.</p>
<p>We have used the Hurricane Weather Research and Forecasting (HWRF) model (<xref ref-type="bibr" rid="B29">Ma et al., 2020</xref>) to provide winds and atmospheric pressures to force ADCIRC (<xref ref-type="bibr" rid="B27">Luettich et al., 1992</xref>) and WW3 models. HWRF has movable multilevel nesting technology and is designed for extreme events such as hurricanes. The model runs on a stationary parent and two movable nest domains. The parent domain covers 77.2&#xb0; &#xd7; 77.2&#xb0; with 13.5&#xa0;km resolution on a rotated latitude/longitude E-staggered grid. The middle nest domain, of about 17.8&#xb0; &#xd7; 17.8&#xb0; with 4.5&#xa0;km resolution, and the inner nest domain, of about 5.9&#xb0; &#xd7; 5.9&#xb0; with 1.5&#xa0;km resolution, move along with the storm using two-way interactive nesting. The hourly data are extracted for wind speed at 10&#xa0;m elevation and pressure at MSL (see <xref ref-type="bibr" rid="B1">Abdolali et al. (2020)</xref> and <xref ref-type="bibr" rid="B2">Abdolali et al. (2021)</xref> for more information on the HWRF model and forcing data preparation).</p>
<p>The extent of an unstructured grid is shown in <xref ref-type="fig" rid="F5">Figure 5</xref>. This grid is generated in accordance with enhancement in grid resolution and size in the study area down to 20 &#x223c; m coastal resolution. Such a resolution is required to represent complex marsh geometry (<xref ref-type="bibr" rid="B15">Deb et al., 2022b</xref>). We first conducted simulations with the ADCIRC model to prepare water level and current fields for WW3. Then, two sets of WW3 simulations were performed, forced by a wind from HWRF, water level, and current from the ADCIRC model. In the first simulation, the wave&#x2013;vegetation sink term was deactivated (VEG0). In the second simulation, the VEG1 sink term was activated. For this simulation, spatially variable vegetation characteristics were used in the model.</p>
<p>In the wave model simulations, the model resolves the source spectrum with frequencies between 0.05 and 0.9597 Hz, divided into 32 spectral bands with an increment factor of 1.1 and 36 directions with a 10&#xb0; increment. The boundary conditions are imposed at the eastern open boundary nodes of the unstructured mesh to include the effect of a distantly generated swell extracted from a global simulation on a structured grid with 0.5&#xb0;, forced by the GFS wind field. In addition (<xref ref-type="bibr" rid="B6">Ardhuin et al., 2010</xref>), source term parameterizations (ST4), nonlinear wave-wave interaction using the discrete interaction approximation, DIA (<xref ref-type="bibr" rid="B21">Hasselmann et al., 1985</xref>), moving bottom friction (SHOWEX-BT4) (<xref ref-type="bibr" rid="B5">Ardhuin et al., 2003</xref>), depth-limited breaking based on Battjes&#x2013;Janssen formulation (DB1) (<xref ref-type="bibr" rid="B9">Battjes and Janssen, 1978</xref>), nonlinear triad interactions (Lumped Triad Interaction method LTA) (<xref ref-type="bibr" rid="B18">Eldeberky and Battjes, 1996</xref>), and reflection by the coast (REF1) (<xref ref-type="bibr" rid="B7">Ardhuin and Roland, 2012</xref>) have been used for computations. The domain decomposition parallelization and the implicit numerical scheme are utilized for these simulations to avoid small time step in the explicit scheme, mandated by small grid resolution in the Magothy bay area (&#x223c;20&#xa0;m) (<xref ref-type="bibr" rid="B1">Abdolali et al., 2020</xref>).</p>
<p>We compared the time series of storm surge and wave model outputs at pressure gauge locations (<xref ref-type="fig" rid="F5">Figure 5D</xref>). The results are shown in <xref ref-type="fig" rid="F7">Figure 7</xref> for transect AA and <xref ref-type="fig" rid="F8">Figure 8</xref> for transect BB as time series of water level (<italic>&#x3b7;</italic>) from the storm surge model and significant wave height (<italic>H</italic>
<sub>
<italic>s</italic>
</sub>) from WW3. The gauges are sorted by proximity to the bay from top to bottom for each transect. In each panel, the observed and modeled water levels are shown by black and red lines, respectively. Wave observations and model outputs without vegetation sink term (VEG0) and with vegetation sink term (VEG1) are shown by blue, magenta, and green lines, respectively. Overall performance at pressure gauge locations is shown in the Taylor diagrams presented in <xref ref-type="fig" rid="F9">Figure 9</xref>, combining standard deviation (<italic>&#x3c3;</italic>), the root mean square deviation (RMSD), and correlation coefficient (<italic>CC</italic>) for the observation and model outputs. For water level <italic>&#x3b7;</italic>, the normalized standard deviation (<italic>&#x3c3;</italic>) varies between 1.05 and 1.51, whereas the RMSD range is 0.42&#x2013;0.87. The correlation coefficient <italic>(CC)</italic> range is 0.83&#x2013;0.92. A similar correlation coefficient is observed for the significant wave height time series at wave gauge locations within the ranges of 0.51&#x2013;0.88 and 0.52&#x2013;0.89 for VEG0 and VEG1 sink terms, respectively. However, a substantial improvement is achieved with the activation of the vegetation sink term for the standard deviation from the range of 1.19&#x2013;20.81 to 1.09&#x2013;2.54. Similarly, the RMSD improved from 0.55&#x2013;20.18 to 0.54&#x2013;2.18.</p>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption>
<p>Wave and storm surge Models&#x2019; validation at the wave and water level gauges locations (transect AA) for significant wave height <italic>H</italic>
<sub>
<italic>s</italic>
</sub>(observation: blue; WW3 without wave&#x2013;vegetation interaction: magenta; and WW3 with wave&#x2013;vegetation interaction: green) and water level elevation <italic>&#x3b7;</italic> (observation: black; and ADCIRC: red).</p>
</caption>
<graphic xlink:href="fbuil-08-891612-g007.tif"/>
</fig>
<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption>
<p>Wave and storm surge Models&#x2019; validation at the wave and water level gauges locations (transect BB) for significant wave height <italic>H</italic>
<sub>
<italic>s</italic>
</sub>(observation: blue; WW3 without wave&#x2013;vegetation interaction: magenta; and WW3 with wave&#x2013;vegetation interaction: green) and water level elevation <italic>&#x3b7;</italic> (observation: black; and ADCIRC: red).</p>
</caption>
<graphic xlink:href="fbuil-08-891612-g008.tif"/>
</fig>
<fig id="F9" position="float">
<label>FIGURE 9</label>
<caption>
<p>Taylor diagrams for water level (<italic>&#x3b7;</italic>: top left); and significant wave height (<italic>H</italic>
<sub>
<italic>s</italic>
</sub>: right and bottom left (zoom in) representing modeled and collected data at gauges locations (red: ADCIRC; magenta: WW3 without wave&#x2013;vegetation interaction; and green: WW3 with wave&#x2013;vegetation interaction) in terms of the Pearson correlation coefficient, the normalized root mean square deviation (RMSD), and the normalized standard deviation <italic>&#x3c3;</italic>.</p>
</caption>
<graphic xlink:href="fbuil-08-891612-g009.tif"/>
</fig>
<p>From the linear regression analysis, a slight underestimation of water level by ADCIRC is observed with a skill of 0.97, whereas WW3 overestimates the significant wave height with skills of 1.17 without the vegetation sink term and 1.04 with the vegetation sink term (<xref ref-type="fig" rid="F10">Figure 10</xref>).</p>
<fig id="F10" position="float">
<label>FIGURE 10</label>
<caption>
<p>Linear regression comparison between collected data <italic>versus</italic> WW3 (significant wave height <italic>H</italic>
<sub>
<italic>s</italic>
</sub>: left) and ADCIRC (water elevation <italic>&#x3b7;</italic>: right) models. The linear regression (dotted-dashed lines) is shown in each subplot.</p>
</caption>
<graphic xlink:href="fbuil-08-891612-g010.tif"/>
</fig>
<p>Wave height significantly improved due to wave&#x2013;vegetation interaction. <xref ref-type="fig" rid="F11">Figure 11</xref> represents the maximum wave height during the whole simulation (17&#x2013;30 September) between VEG0 and VEG1 cases.</p>
<fig id="F11" position="float">
<label>FIGURE 11</label>
<caption>
<p>Wave model sensitivity to wave&#x2013;vegetation interaction in terms of the spatial distribution of the envelope of significant wave height <italic>H</italic>
<sub>
<italic>s</italic>
</sub>, extracted from the model without wave&#x2013;vegetation interaction (left) with wave&#x2013;vegetation interaction (right). The observed maximum values at wave gauge locations are shown with the circles.</p>
</caption>
<graphic xlink:href="fbuil-08-891612-g011.tif"/>
</fig>
</sec>
</sec>
</sec>
<sec id="s4">
<title>4 Summary and Conclusion</title>
<p>This study implemented wave&#x2013;vegetation interaction in the WW3 model. The application is examined using a standard laboratory flume case for wave dissipation due to homogeneous vegetation fields. Different submergence ratios, densities were examined for single and double-peaks incident waves. The drag coefficients <italic>C</italic>
<sub>
<italic>d</italic>
</sub> were calculated using the empirical relationship based on Keulegan&#x2013;Carpenter <italic>KC</italic> and Reynolds Re numbers, considering the correction due to the canopy submergence.</p>
<p>In addition to controlled laboratory experiments, we validated the model for a field application with spatially variable vegetation fields in a vegetated marshland during Hurricanes Jose and Maria, 2017. A well-known atmospheric model designed for hurricane modeling (HWRF) is used to drive the storm surge model (ADCIRC) to provide water level and current fields and the spectral wave model (WW3). These wind, current, and water level inputs were used to drive WW3 on a high-resolution triangular mesh with a &#x223c;1&#xa0;km resolution near the coast of the East Coast of the United States and a nominal resolution of <inline-formula id="inf7">
<mml:math id="m26">
<mml:mo>&#x223c;</mml:mo>
<mml:mn>20</mml:mn>
<mml:mspace width="0.3333em"/>
<mml:mi>m</mml:mi>
</mml:math>
</inline-formula> in the Magothy Bay where wave height observations were available for validation. Such a resolution is required for resolving wave action in complex marsh environments (<xref ref-type="bibr" rid="B16">Deb et al., 2022a</xref>). WW3 simulations were conducted with the domain decomposition parallelization algorithm and the implicit numerical solver (<xref ref-type="bibr" rid="B1">Abdolali et al., 2020</xref>), making it possible to run the model on a high-resolution grid efficiently. The model skills and improvement due to the vegetation sink terms were examined and discussed using time series of high-frequency pressure gauges. We conclude that the wave attenuation due to vegetation is significant in marsh environments, and neglecting the vegetation sink term leads to a significant bias in the model outputs and observations. It is shown that WW3 skills are improved over areas with vegetation, with sufficient grid resolution and proper representation of spatially variable vegetation fields. Designing and evaluating wetlands as nature-based flood risk reduction features require accurate modeling of wave dissipation by vegetation. Updated WW3 with the vegetation sink term coupled with a storm surge provides the necessary capability to model wave attenuation in wetlands. Such implementation provides an opportunity to investigate the effect of seasonal variability of vegetation coverage on wave characteristics. Organic protection methodologies can be designed for beach and wetland erosion mitigation purposes. In addition, the changes in the stem characteristic (diameter, height, and density) and hydrodynamics can be investigated to identify the role of dry/wetland cover before, during, and after the occurrence of severe storm surges. Further improvement can be achieved by a two-way coupling between the storm surge and wave models, where depth-integrated wave radiation stresses in the presence of vegetation affect the storm surge model. In return, the updated water level and current fields derive the wave model dynamically. In this way, the model components interact with each other representing what occurs in nature (<xref ref-type="bibr" rid="B32">Moghimi et al., 2020</xref>).</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s5">
<title>Data Availability Statement</title>
<p>The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found at <ext-link ext-link-type="uri" xlink:href="https://github.com/NOAA-emc/ww3">https://github.com/NOAA-emc/ww3</ext-link>.</p>
</sec>
<sec id="s6">
<title>Author Contributions</title>
<p>AA: conceptualization, methodology, code development, data curation, visualization, validation, writing&#x2014;original draft. TH: conceptualization, methodology, code development, writing&#x2014;review and editing. MA: laboratory experiments, writing&#x2014;original draft. AR: code development, writing&#x2014;review and editing. AK: field case observation collection and simulation. JS: methodology, program management, review and editing. CF: field case observation collection, review and editing. AM: program management, methodology. MS: Software.</p>
</sec>
<sec sec-type="COI-statement" id="s7">
<title>Conflict of Interest</title>
<p>AA was employed by the company I.M. Systems Group, Inc.</p>
<p>The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<ack>
<p>The author wishes to thank Drs. Saeideh Banihashemi and Matthew Masarik for fruitful discussions. AA and AM acknowledge the support of the Consumer Option for an Alternative System to Allocate Losses (COASTAL Act) Project within National Oceanic and Atmospheric Administration (NOAA).</p>
</ack>
<sec sec-type="disclaimer" id="s8">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations or those of the publisher, the editors, and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s9">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fbuil.2022.891612/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fbuil.2022.891612/full&#x23;supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Table1.pdf" id="SM1" mimetype="application/pdf" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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