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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Bioeng. Biotechnol.</journal-id>
<journal-title>Frontiers in Bioengineering and Biotechnology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Bioeng. Biotechnol.</abbrev-journal-title>
<issn pub-type="epub">2296-4185</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">843887</article-id>
<article-id pub-id-type="doi">10.3389/fbioe.2022.843887</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Bioengineering and Biotechnology</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Biosynthetic Pathway and Metabolic Engineering of Succinic Acid</article-title>
<alt-title alt-title-type="left-running-head">Liu et&#x20;al.</alt-title>
<alt-title alt-title-type="right-running-head">Advances in Succinic Acid Biosynthesis</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Xiutao</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1548647/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhao</surname>
<given-names>Guang</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/234503/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Sun</surname>
<given-names>Shengjie</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Fan</surname>
<given-names>Chuanle</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Feng</surname>
<given-names>Xinjun</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1399053/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Xiong</surname>
<given-names>Peng</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>School of Life Sciences and Medicine</institution>, <institution>Shandong University of Technology</institution>, <addr-line>Zibo</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>State Key Lab of Microbial Technology</institution>, <institution>Shandong University</institution>, <addr-line>Qingdao</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>CAS Key Laboratory of Biobased Materials</institution>, <institution>Qingdao Institute of Bioenergy and Bioprocess Technology</institution>, <institution>Chinese Academy of Sciences</institution>, <addr-line>Qingdao</addr-line>, <country>China</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>School of Chemical Engineering</institution>, <institution>University of Chinese Academy of Sciences</institution>, <addr-line>Beijing</addr-line>, <country>China</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/234264/overview">Xiao-Jun Ji</ext-link>, Nanjing Tech University, China</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/802876/overview">Jiangfeng Ma</ext-link>, Nanjing Tech University, China</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/37935/overview">Katja Bettenbrock</ext-link>, Max Planck Society, Germany</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Xinjun Feng, <email>fengxj@qibebt.ac.cn</email>; Peng Xiong, <email>xiongp@sdut.edu.cn</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Bioprocess Engineering, a section of the journal Frontiers in Bioengineering and Biotechnology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>08</day>
<month>03</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>10</volume>
<elocation-id>843887</elocation-id>
<history>
<date date-type="received">
<day>27</day>
<month>12</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>16</day>
<month>02</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Liu, Zhao, Sun, Fan, Feng and Xiong.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Liu, Zhao, Sun, Fan, Feng and Xiong</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these&#x20;terms.</p>
</license>
</permissions>
<abstract>
<p>Succinic acid, a dicarboxylic acid produced as an intermediate of the tricarboxylic acid (TCA) cycle, is one of the most important platform chemicals for the production of various high value-added derivatives. As traditional chemical synthesis processes suffer from nonrenewable resources and environment pollution, succinic acid biosynthesis has drawn increasing attention as a viable, more environmentally friendly alternative. To date, several metabolic engineering approaches have been utilized for constructing and optimizing succinic acid cell factories. In this review, different succinic acid biosynthesis pathways are summarized, with a focus on the key enzymes and metabolic engineering approaches, which mainly include redirecting carbon flux, balancing NADH/NAD<sup>&#x2b;</sup> ratios, and optimizing CO<sub>2</sub> supplementation. Finally, future perspectives on the microbial production of succinic acid are discussed.</p>
</abstract>
<kwd-group>
<kwd>succinic acid</kwd>
<kwd>biosynthesis pathways</kwd>
<kwd>metabolic engineering</kwd>
<kwd>CO2 fixation</kwd>
<kwd>NADH/NAD &#x2b; ratio</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>Succinic acid is a C4-dicarboxylic acid produced as a key intermediate of the tricarboxylic acid (TCA) cycle. As a widely investigated high-value chemical, it has numerous applications in the fields of agriculture, green solvents, pharmaceuticals, and biodegradable plastics. It can also be chemically converted into a variety of important industrial chemicals such as 1,4-butanediol, butadiene, and tetrahydrofuran. Succinic acid has been identified as one of the 12&#x20;value-added bio-based platform chemicals by the United&#x20;States Department of Energy (DOE) (<xref ref-type="bibr" rid="B125">Werpy et&#x20;al., 2004</xref>). The market potential of succinic acid and its direct derivatives is estimated to be as high as 245,000 tons per year, while the market size of succinic acid-based polymers is expected to be 25&#xa0;million tons per year (<xref ref-type="bibr" rid="B13">Bozell and Petersen, 2010</xref>). In traditional chemical synthesis methods, maleic anhydride from petrochemical feedstocks serves as the key substrate for succinic acid, and Ni or Pd-based catalysts have been employed for the hydrogenation of maleic anhydride to succinic acid (<xref ref-type="bibr" rid="B144">Zhang et&#x20;al., 2020</xref>). Although the conversion rate is high, many problems still exist, such as the complex operations required for synthesis, the high-energy consumption, and the harsh reaction conditions (<xref ref-type="bibr" rid="B84">Louast&#xe9; and Eloutassi, 2020</xref>; <xref ref-type="bibr" rid="B144">Zhang et&#x20;al., 2020</xref>). Therefore, much attention has focused on succinic acid biosynthesis, and to date, some efficient succinic acid bio-producers have been successfully applied for industrial purposes (<xref ref-type="bibr" rid="B125">Willke and Vorlop, 2004</xref>; <xref ref-type="bibr" rid="B53">Kequan et&#x20;al., 2008</xref>). Compared with chemical processing, the raw materials of biosynthesis are more widely availableand lower in cost. Crude glycerol (<xref ref-type="bibr" rid="B36">Gao et&#x20;al., 2016</xref>), food processing waste (<xref ref-type="bibr" rid="B65">Li et&#x20;al., 2019</xref>), corn fiber (<xref ref-type="bibr" rid="B19">Chen et&#x20;al., 2011</xref>), cassava root (<xref ref-type="bibr" rid="B117">Thuy et&#x20;al., 2017</xref>), lignocellulose hydrolyzate (<xref ref-type="bibr" rid="B144">Zhang et&#x20;al., 2020</xref>), maltose syrup, and other renewable biomass resources are potential sources of the raw materials for these reactions. Significantly, CO<sub>2</sub> fixation and utilization processes are an integral part of succinic acid biosynthesis in almost all pathways (<xref ref-type="table" rid="T1">Table&#x20;1</xref>). Theoretically speaking, the biological production of 1&#xa0;kg of succinic acid can fix at least 0.37&#xa0;kg CO<sub>2</sub>, which presents an environmental benefit to the use of succinic acid biosynthesis upstream of the production of other chemicals (<xref ref-type="bibr" rid="B121">Wang et&#x20;al., 2011</xref>).</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Comparison of different succinic acid biosynthetic pathways.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Pathways</th>
<th align="center">rTCA (PPC)</th>
<th align="center">rTCA (PCK)</th>
<th align="center">rTCA (PYC)</th>
<th align="center">rTCA (MAE)</th>
<th align="center">oTCA pathway</th>
<th align="center">GAC pathway</th>
<th align="center">3HP pathway</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td rowspan="2" align="left">Precursors</td>
<td align="center">PEP</td>
<td align="center">PEP</td>
<td align="center">PEP</td>
<td align="center">PEP</td>
<td align="center">Acetyl-CoA</td>
<td align="center">Acetyl-CoA</td>
<td align="center">Acetyl-CoA</td>
</tr>
<tr>
<td align="center">CO<sub>2</sub>
</td>
<td align="center">CO<sub>2</sub>
</td>
<td align="center">CO<sub>2</sub>
</td>
<td align="center">CO<sub>2</sub>
</td>
<td align="center">OAA</td>
<td align="center">OAA</td>
<td align="center">CO<sub>2</sub>
</td>
</tr>
<tr>
<td align="left">Reaction steps</td>
<td align="center">4</td>
<td align="center">4</td>
<td align="center">5</td>
<td align="center">4</td>
<td align="center">5</td>
<td align="center">3</td>
<td align="center">6</td>
</tr>
<tr>
<td align="left">ATP/SA (mol/mol)</td>
<td align="center">0</td>
<td align="center">&#x2b;1</td>
<td align="center">0</td>
<td align="center">&#x2b;1</td>
<td align="center">&#x2b;1</td>
<td align="center">0</td>
<td align="center">&#x2212;2</td>
</tr>
<tr>
<td align="left">NADH/SA (mol/mol)</td>
<td align="center">&#x2212;2</td>
<td align="center">&#x2212;2</td>
<td align="center">&#x2212;2</td>
<td align="center">&#x2212;2</td>
<td align="center">&#x2b;2</td>
<td align="center">0</td>
<td align="center">&#x2212;3</td>
</tr>
<tr>
<td align="left">CO<sub>2</sub>/SA (mol/mol)</td>
<td align="center">&#x2212;1</td>
<td align="center">&#x2212;1</td>
<td align="center">&#x2212;1</td>
<td align="center">&#x2212;1</td>
<td align="center">&#x2b;2</td>
<td align="center">0</td>
<td align="center">&#x2212;2</td>
</tr>
<tr>
<td align="left">CO<sub>2</sub>-fixing enzymes</td>
<td align="center">PPC</td>
<td align="center">PCK</td>
<td align="center">PYC</td>
<td align="center">MAE</td>
<td align="center">NE</td>
<td align="center">NE</td>
<td align="center">ACC, PCC</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>SA: succinic&#x20;acid.</p>
</fn>
<fn>
<p>NE: non-existent.</p>
</fn>
<fn>
<p>Abbreviationr: TCA, the reductive branch of the TCA, cycle; oTCA, the oxidative branch pathway of the TCA, cycle; GAC, the glyoxylate shunt pathway.</p>
</fn>
<fn>
<p>(&#x2212;) means to consume (&#x2b;) means to produce.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>Many anaerobic and facultative anaerobic microbes produce succinic acid as their fermentation end product. These succinic acid-producing strains can be divided into two categories, namely, the natural succinic acid producers (<xref ref-type="table" rid="T2">Table&#x20;2</xref>) and the metabolic engineering succinic acid producers (<xref ref-type="table" rid="T3">Table&#x20;3</xref>). The natural succinic acid producers mainly include <italic>Actinobacillus succinogenes</italic> (<xref ref-type="bibr" rid="B117">Thuy et&#x20;al., 2017</xref>), <italic>Anaerobiospirillum succiniciproducens</italic> (<xref ref-type="bibr" rid="B88">Meynial-Salles et&#x20;al., 2010</xref>), <italic>Mannheimia succiniciproducens</italic> (<xref ref-type="bibr" rid="B61">Lee et&#x20;al., 2003</xref>), <italic>Basfia succiniciproducens</italic> (<xref ref-type="bibr" rid="B24">Choi et&#x20;al., 2015</xref>) and <italic>Escherichia coli</italic> (<xref ref-type="bibr" rid="B116">Thakker et&#x20;al., 2011</xref>). Among these strains, <italic>A. succinogenes</italic> and <italic>A. succiniciproducens</italic> were the first identified natural overproducers of succinic acid (<xref ref-type="bibr" rid="B15">Bretz and Kabasci, 2012</xref>). <italic>A. succinogenes</italic>, originally isolated from bovine rumen, is a Gram-negative, capnophilic, facultative anaerobic bacterium, and has been used as a succinic acid-producing chassis since 1981 by the Michigan Biotechnology Institute (MBI). <italic>A. succinogenes</italic> has a better tolerance of high concentrations of succinic acid than other strains (<xref ref-type="bibr" rid="B120">Wan et&#x20;al., 2008</xref>) and can utilize extensive carbon sources, including glucose, xylose, glycerol, cellobiose, cheese whey (<xref ref-type="bibr" rid="B120">Wan et&#x20;al., 2008</xref>), cane molasses (<xref ref-type="bibr" rid="B82">Liu et&#x20;al., 2008</xref>), straw hydrolysate (<xref ref-type="bibr" rid="B146">Zheng et&#x20;al., 2009</xref>), and crop stalk wastes. However, <italic>A. succinogenes</italic> also has some drawbacks as a succinic acid production platform, such as numerous auxotrophies and lack of useful genetic tools (<xref ref-type="bibr" rid="B3">Ahn et&#x20;al., 2016</xref>). <italic>A. succiniciproducens</italic> is a Gram-negative and strictly anaerobic bacterium (<xref ref-type="bibr" rid="B121">Wang et&#x20;al., 2011</xref>) that produces succinic acid and acetate as its major end products, while producing lactate and ethanol as minor products, depending on culture conditions (<xref ref-type="bibr" rid="B62">Lee et&#x20;al., 1999</xref>). Compared with <italic>A. succinogenes</italic>, <italic>A. succiniciproducens</italic> shows only weak salt tolerance (<xref ref-type="bibr" rid="B15">Bretz and Kabasci, 2012</xref>), which partly hinders the wide application of this strain. <italic>M. succiniciproducens</italic>, also isolated from bovine rumen, is a facultatively anaerobic, mesophilic, non-motile, non-spore-forming, Gram-negative bacterium, and can utilize a wide variety of carbon sources, similar to <italic>A. succinogenes</italic> (<xref ref-type="bibr" rid="B63">Lee et&#x20;al., 2002</xref>). This bacterium has an excellent CO<sub>2</sub>-fixing pathway and can produce succinic acid as a major end product through simple anaerobic fermentation. Nevertheless, this species also has some disadvantages, such as its pH sensitivity and auxotrophy for several amino acids and vitamins (<xref ref-type="bibr" rid="B3">Ahn et&#x20;al., 2016</xref>). <italic>B. succiniciproducens</italic>, a new member of the family Pasteurellaceae, was isolated from the rumen of a German cow in 2008, and shows high similarity to <italic>M. succinciproducens</italic> (<xref ref-type="bibr" rid="B3">Ahn et&#x20;al., 2016</xref>). In the 2,363 open reading frames (ORFs) of <italic>B. succiniciproducens</italic> DD1 and the 2,380 ORFs of <italic>M. succiniciproducens</italic> MBEL55&#xa0;E, 2006 ORFs were found to be homologous (<xref ref-type="bibr" rid="B57">Kuhnert et&#x20;al., 2010</xref>). This bacterium can export succinic acid as an end product and has been used as a succinic acid-producing chassis by the Succinity Company (a joint venture of BASF and Purac). Wild-type <italic>E.&#x20;coli</italic> can also produce minor amounts of succinic acid under anaerobic conditions, whereas under aerobic conditions succinic acid is formed only as an intermediate of the TCA cycle unless the glyoxylate bypass is operating (<xref ref-type="bibr" rid="B115">Thakker et&#x20;al., 2012</xref>). <xref ref-type="table" rid="T2">Table&#x20;2</xref> shows a summary of bio-based succinic acid production by different wild-type strains with various fermentation substrates reported in selected papers. Among this list, <italic>A. succinogenes</italic>, <italic>B. succiniciproducens</italic>, and <italic>M. succiniciproducens</italic> are the most promising wild-type bacterial strains which have relatively high yield and productivity, but they still cannot satisfy industrial production requirements. Most wild-type strains show a tendency to degenerate (<xref ref-type="bibr" rid="B74">Lin et&#x20;al., 2005b</xref>), pH sensitivity and auxotrophy, and they require a rich, complex medium for efficient growth. Thus, further optimization and improvement is needed before natural succinic acid producers can be used for industrial purposes.</p>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>Production capacity of succinic acid by main natural microbes.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Strains</th>
<th align="center">Substrate</th>
<th align="center">Fermentation type</th>
<th align="center">Titer (g/L)</th>
<th align="center">Productivity (g/h/L)</th>
<th align="center">Yield (g/g)</th>
<th align="center">References</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">
<italic>A. succinogenes</italic> FZ53</td>
<td>Glucose</td>
<td>Anaerobic batch</td>
<td align="char" char=".">105.8</td>
<td align="center">1.36</td>
<td align="center">0.82</td>
<td>
<xref ref-type="bibr" rid="B94">Pateraki et&#x20;al. (2016)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>A. succinogenes</italic> 130 Z</td>
<td>Cheese whey</td>
<td>Anaerobic batch</td>
<td align="char" char=".">21.5</td>
<td align="center">0.44</td>
<td align="center">0.57</td>
<td>
<xref ref-type="bibr" rid="B120">Wan et&#x20;al. (2008)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>A. succinogenes</italic> 130 Z</td>
<td>Glucose</td>
<td>Anaerobic batch</td>
<td align="char" char=".">67.2</td>
<td align="center">0.80</td>
<td align="center">N/A</td>
<td>
<xref ref-type="bibr" rid="B41">Guettler et&#x20;al. (1996)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>A. succinogenes</italic> 130 Z</td>
<td>Xylose</td>
<td>Anaerobic batch</td>
<td align="char" char=".">38.4</td>
<td align="center">0.94</td>
<td align="center">0.70</td>
<td>
<xref ref-type="bibr" rid="B155">Michael et&#x20;al. (2015)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>A. succinogenes</italic> CGMCC1593</td>
<td>Glucose</td>
<td>Anaerobic batch</td>
<td align="char" char=".">60.2</td>
<td align="center">1.30</td>
<td align="center">0.75</td>
<td>
<xref ref-type="bibr" rid="B121">Wang et&#x20;al. (2011)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>A. succinogenes</italic> CGMCC1593</td>
<td>Cane molasses</td>
<td>Anaerobic batch</td>
<td align="char" char=".">50.6</td>
<td align="center">0.84</td>
<td align="center">0.80</td>
<td>
<xref ref-type="bibr" rid="B82">Liu et&#x20;al. (2008)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>A. succinogenes</italic> NJ113</td>
<td>Glucose</td>
<td>Anaerobic batch</td>
<td align="char" char=".">35.4</td>
<td align="center">N/A</td>
<td align="center">0.73</td>
<td>
<xref ref-type="bibr" rid="B20">Chen et&#x20;al. (2018)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>A. succinogenes</italic> CGMCC1593</td>
<td>Straw hydrolysate</td>
<td>Anaerobic batch</td>
<td align="char" char=".">45.5</td>
<td align="center">0.19</td>
<td align="center">0.81</td>
<td>
<xref ref-type="bibr" rid="B146">Zheng et&#x20;al. (2009)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>A. succinogenes</italic> CGMCC2650</td>
<td>Cotton stalk</td>
<td>Anaerobic batch</td>
<td align="char" char=".">15.8</td>
<td align="center">0.62</td>
<td align="center">1.23</td>
<td>
<xref ref-type="bibr" rid="B69">Li et&#x20;al. (2010)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>A.succiniciproducens</italic> ATCC53488</td>
<td>Glucose</td>
<td>Anaerobicbatch</td>
<td align="char" char=".">1.5</td>
<td align="center">0.75</td>
<td align="center">N/A</td>
<td>
<xref ref-type="bibr" rid="B88">Meynial-Salles et&#x20;al. (2010)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>M. succiniciproducens</italic> MBEL55&#xa0;E</td>
<td>Whey</td>
<td>Anaerobic batch</td>
<td align="char" char=".">13.4</td>
<td align="center">1.18</td>
<td align="center">0.71</td>
<td>
<xref ref-type="bibr" rid="B61">Lee et&#x20;al. (2003)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>M. succiniciproducens</italic> MBEL55&#xa0;E</td>
<td>Glucose</td>
<td>Anaerobic batch</td>
<td align="char" char=".">14</td>
<td align="center">1.87</td>
<td align="center">0.7</td>
<td>
<xref ref-type="bibr" rid="B63">Lee et&#x20;al. (2002)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>M. succiniciproducens</italic> MBEL55&#xa0;E</td>
<td>Wood hydrolysate</td>
<td>Anaerobic batch</td>
<td align="char" char=".">11.73</td>
<td align="center">1.17</td>
<td align="center">0.56</td>
<td>
<xref ref-type="bibr" rid="B55">Kim et&#x20;al. (2004)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>B. succiniciproducens</italic> DD1</td>
<td>Glucose</td>
<td>Anaerobic batch</td>
<td align="char" char=".">20</td>
<td align="center">0.68</td>
<td align="center">0.49</td>
<td>
<xref ref-type="bibr" rid="B10">Becker et&#x20;al. (2013)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>E.&#x20;coli</italic>
</td>
<td>Glucose</td>
<td>Anaerobic batch</td>
<td align="char" char=".">1.18</td>
<td align="center">0.13</td>
<td align="center">0.12</td>
<td>
<xref ref-type="bibr" rid="B37">Gokarn et&#x20;al. (1998)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>C. glutamicum</italic> R</td>
<td>Glucose</td>
<td>Micro-aerobic, fed-batch with membrane for cell recycling</td>
<td align="char" char=".">23.0</td>
<td align="center">3.63</td>
<td align="center">0.19</td>
<td>
<xref ref-type="bibr" rid="B91">Okino et&#x20;al. (2005)</xref>
</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap id="T3" position="float">
<label>TABLE 3</label>
<caption>
<p>Production capacity of succinic acid by metabolic engineering strains in selected papers.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Strains</th>
<th align="center">Genotype</th>
<th align="center">Substrate</th>
<th align="center">Fermentation type</th>
<th align="center">Titer (g/L)</th>
<th align="center">Productivity (g/h/L)</th>
<th align="center">Yield (g/g)</th>
<th align="center">References</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">
<italic>E.&#x20;coli</italic> W1485</td>
<td>
<italic>&#x394;pflAB::Cm, &#x394;ldhA::Kan, &#x394;ptsG,</italic> expression of <italic>E.&#x20;coli cra</italic> gene with mutation at R57K, A58G, G59Q, R60Q, S75H, T76Y, D148I, R149I</td>
<td>Glucose</td>
<td>Two-stage fed-batch</td>
<td align="char" char=".">79.8</td>
<td align="char" char=".">1.00</td>
<td align="char" char=".">0.78</td>
<td>
<xref ref-type="bibr" rid="B148">Zhu et&#x20;al. (2016)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>E.&#x20;coli</italic> W1485</td>
<td>
<italic>&#x394;ackA-pta, &#x394;iclR, &#x394;poxB, &#x394;mgsA, &#x394;sdhA::kan</italic>
<sup>
<italic>R</italic>
</sup>
<italic>,</italic> expression of <italic>C.glutamicum</italic> ATCC13032&#x20;<italic>pyc</italic> gene</td>
<td>Glucose</td>
<td>Aerobic fed-batch</td>
<td align="char" char=".">36.1</td>
<td align="char" char=".">0.69</td>
<td align="char" char=".">0.37</td>
<td>
<xref ref-type="bibr" rid="B135">Yang et&#x20;al. (2014)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>E.&#x20;coli</italic> DY329</td>
<td>
<italic>&#x394;ackA, &#x394;pta, &#x394;ldhA, &#x394;pstG</italic>, expression of <italic>E.&#x20;coli mdh</italic> gene</td>
<td>Glucose</td>
<td>Two-stage fed-batch</td>
<td align="char" char=".">32.3</td>
<td align="char" char=".">0.40</td>
<td align="center">-</td>
<td>
<xref ref-type="bibr" rid="B150">Zhu et&#x20;al. (2014)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>E.&#x20;coli</italic> SD121</td>
<td>Expression of <italic>ppc</italic>; deletion of <italic>pflB</italic>, <italic>ldhA</italic> and <italic>pts</italic>G</td>
<td>Glucose</td>
<td>Dual-phase fed- batch</td>
<td align="char" char=".">116.2</td>
<td align="char" char=".">1.55</td>
<td align="char" char=".">1.13</td>
<td>
<xref ref-type="bibr" rid="B121">Wang et&#x20;al. (2011)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>E.&#x20;coli</italic> AFP111</td>
<td>Deletion of <italic>pflB, ldhA</italic> and <italic>ptsG</italic>
</td>
<td>Glucose</td>
<td>Dual-phase fed- batch</td>
<td align="char" char=".">101.2</td>
<td align="char" char=".">1.89</td>
<td align="char" char=".">1.07</td>
<td>
<xref ref-type="bibr" rid="B49">Jiang et&#x20;al. (2010)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>E.&#x20;coli</italic> MG1655</td>
<td>
<italic>&#x394;adhE, &#x394;ldhA,</italic> expression of <italic>Lactococcus lactis pyc</italic> gene</td>
<td>Glucose</td>
<td>Anaerobic fed-batch</td>
<td align="char" char=".">15.6</td>
<td align="char" char=".">0.65</td>
<td align="char" char=".">0.85</td>
<td>
<xref ref-type="bibr" rid="B100">S&#xe1;nchez et&#x20;al. (2005)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>E.&#x20;coli</italic> HL27659k (pKK313)</td>
<td>
<italic>&#x394;sdhAB, &#x394;ackA-pta, &#x394;poxB, &#x394;iclR, &#x394;ptsG,</italic> expression of <italic>Sorghum vulgare pepc</italic> gene</td>
<td>Glucose</td>
<td>Aerobic fed-batch</td>
<td align="char" char=".">58.3</td>
<td align="char" char=".">0.99</td>
<td align="char" char=".">0.61</td>
<td>
<xref ref-type="bibr" rid="B71">Lin et&#x20;al. (2005d)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>E.&#x20;coli</italic> NZN111</td>
<td>Expression of <italic>Ascaris suummaeA</italic>gene</td>
<td>Glucose</td>
<td>Anaerobic shake flask</td>
<td align="char" char=".">7.07</td>
<td align="center">-</td>
<td align="center">-</td>
<td>
<xref ref-type="bibr" rid="B112">Stols et&#x20;al. (1997)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>E.&#xa0;coli</italic> JCL1208</td>
<td>lacks the <italic>lac</italic> operon but contains a chromosomally inserted<italic>lacI</italic>
<sup>
<italic>q</italic>
</sup>gene, expression of <italic>E.&#x20;coli ppc</italic>under <italic>tac</italic> promoter</td>
<td>Glucose</td>
<td>Anaerobic batch</td>
<td align="char" char=".">10.7</td>
<td align="char" char=".">0.59</td>
<td align="char" char=".">0.30</td>
<td>
<xref ref-type="bibr" rid="B89">Millard et&#x20;al. (1996)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>E.&#xa0;coli</italic> K-12</td>
<td>
<italic>&#x394;ppc,</italic> expression of <italic>A. succinogenes pckA</italic> gene</td>
<td>Glucose</td>
<td>Anaerobic batch</td>
<td align="char" char=".">20.2</td>
<td align="center">-</td>
<td align="center">-</td>
<td>
<xref ref-type="bibr" rid="B89">Millard et&#x20;al. (1996)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>M. succiniciproducens</italic> MBEL55&#xa0;E</td>
<td>
<italic>&#x394;ldhA::Km</italic>
<sup>
<italic>r</italic>
</sup>
<italic>, &#x394;pflB::Cm</italic>
<sup>
<italic>r</italic>
</sup>
<italic>, &#x394;pta-ackA::Sp</italic>
<sup>
<italic>r</italic>
</sup>
</td>
<td>Glucose</td>
<td>Anaerobic fed-batch</td>
<td align="char" char=".">52.4</td>
<td align="char" char=".">1.80</td>
<td align="char" char=".">1.16</td>
<td>
<xref ref-type="bibr" rid="B64">Lee et&#x20;al. (2006)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>M. succiniciproducens</italic> PALK</td>
<td>
<italic>&#x394;ldhA::Km</italic>
<sup>
<italic>r</italic>
</sup>
<italic>, &#x394;pta-ackA::Sp</italic>
<sup>
<italic>r</italic>
</sup>
<italic>,</italic> expression of <italic>C. glutamicummdh</italic>gene</td>
<td>Glucose</td>
<td>Two-stage fed-batch</td>
<td align="char" char=".">134.3</td>
<td align="char" char=".">21.3</td>
<td align="char" char=".">0.81</td>
<td>
<xref ref-type="bibr" rid="B4">Ahn et&#x20;al. (2020)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>M. succiniciproducens</italic> PALFK</td>
<td>Deletion of <italic>ldhA, fruA</italic> and <italic>pta-ackA</italic>
</td>
<td>Sucrose and glycerol</td>
<td>Anaerobic fed-batch</td>
<td align="char" char=".">78.4</td>
<td align="char" char=".">6.02</td>
<td align="char" char=".">1.07</td>
<td>
<xref ref-type="bibr" rid="B60">Lee et&#x20;al. (2016)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>M. succiniciproducens</italic> LPK7</td>
<td>Expression of <italic>fdh;</italic> deletion of <italic>ldhA, pflB</italic> and <italic>pta-ackA</italic>
</td>
<td>Sucrose and formic acid</td>
<td>Anaerobic fed-batch</td>
<td align="char" char=".">76.1</td>
<td align="char" char=".">4.08</td>
<td align="center">-</td>
<td>
<xref ref-type="bibr" rid="B2">Ahn et&#x20;al. (2017)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>S. cerevisiaestrain</italic> PMCFfg</td>
<td>
<italic>MATa ura3-52, &#x394;his3, &#x394;fum1, &#x394;gpd1, &#x394;pdc1, &#x394;pdc5, &#x394;pdc6</italic> (YIP-PYC2MDH3R, pRS313CF)</td>
<td>Glucose At PH 3.8</td>
<td>Aerobic batch</td>
<td align="char" char=".">13.0</td>
<td align="char" char=".">0.11</td>
<td align="center">-</td>
<td>
<xref ref-type="bibr" rid="B134">Yan et&#x20;al. (2014)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>S.cerevisiae</italic>CEN. PK 2-1C</td>
<td>
<italic>&#x394;sdh2,</italic> expression of <italic>Rhizopus oryzaepyc</italic> gene</td>
<td>Glucose</td>
<td>Anaerobic shake flask</td>
<td align="char" char=".">0.8</td>
<td align="char" char=".">0.01</td>
<td align="center">-</td>
<td>
<xref ref-type="bibr" rid="B21">Chen et&#x20;al. (2019)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>Y. lipolytica</italic> Y-3314</td>
<td>Expression of <italic>pck, scs2;</italic> deletion of <italic>ach</italic>
</td>
<td>Glycerol</td>
<td>Aerobic fed-batch</td>
<td align="char" char=".">110.7</td>
<td align="char" char=".">0.80</td>
<td align="char" char=".">0.53</td>
<td>
<xref ref-type="bibr" rid="B31">Cui et&#x20;al. (2017)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>Y. lipolytica</italic> PGC01003</td>
<td>Deletion of <italic>sdh5</italic>
</td>
<td>Glycerol</td>
<td>Aerobic fed-batch</td>
<td align="char" char=".">198.2</td>
<td align="center">-</td>
<td align="center">-</td>
<td>
<xref ref-type="bibr" rid="B67">Li et&#x20;al. (2017)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>Y. lipolytica</italic> Y-3314</td>
<td>Deletion of <italic>sdh1</italic>, <italic>sdh2</italic> and <italic>suc2</italic>
</td>
<td>Glycerol</td>
<td>Aerobic fed-batch</td>
<td align="char" char=".">45.4</td>
<td align="char" char=".">0.28</td>
<td align="char" char=".">0.36</td>
<td>
<xref ref-type="bibr" rid="B138">Yuzbashev et&#x20;al. (2010)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>C. glutamicum</italic>ATCC 13032</td>
<td>
<italic>&#x394;ldh, &#x394;pta-ackA, &#x394;actA, &#x394;poxB, pyc</italic>
<sup>P458</sup>
<italic>, &#x394;pck_</italic>P<sub>tuf</sub>
<italic>::Ms.pckG,</italic> P<sub>tuf</sub>
<italic>::ppc, &#x394;ptsG</italic>,expression of <italic>C. glutamicum NCgl0275</italic> gene</td>
<td>Glucose</td>
<td>Two-stage fed-batch</td>
<td align="char" char=".">152.2</td>
<td align="char" char=".">0.95</td>
<td align="char" char=".">1.1</td>
<td>
<xref ref-type="bibr" rid="B27">Chung et&#x20;al. (2017)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>C. glutamicum</italic>
</td>
<td>Expression of <italic>pyc;</italic> deletion of <italic>ldhA</italic>
</td>
<td>Glucose</td>
<td>Micro-aerobic fed- batch with membrane for cell recycling</td>
<td align="char" char=".">146.0</td>
<td align="char" char=".">3.17</td>
<td align="char" char=".">0.92</td>
<td>
<xref ref-type="bibr" rid="B92">Okino et&#x20;al. (2008)</xref>
</td>
</tr>
<tr>
<td align="left">
<italic>C. glutamicum</italic> BOL</td>
<td>Expression of <italic>pyc, fdh</italic> and <italic>gapA;</italic> deletion of <italic>cat, pqo, ldhA</italic> and <italic>pta-ackA</italic>
</td>
<td>Glucose</td>
<td>Dual phase fed- batch</td>
<td align="char" char=".">133.8</td>
<td align="char" char=".">2.53</td>
<td align="char" char=".">1.09</td>
<td>
<xref ref-type="bibr" rid="B75">Litsanov et&#x20;al. (2012)</xref>
</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Metabolic engineering strategies, however, is a promising way of generating succinic acid-producing strains, using not only natural succinic acid producers, but also unnatural producers, such as <italic>Corynebacterium glutamicum, Yarrowia lipolytica, Saccharomyces cerevisiae, and Pichia kudriavzevii</italic> (<xref ref-type="table" rid="T3">Table&#x20;3</xref>). Taking <italic>C. glutamicum</italic> as an example, the highest concentration of 152.2&#xa0;g/L of succinic acid with a yield and productivity of 1.1&#xa0;g/g glucose and 1.11&#xa0;g/L/h, respectively, were achieved by the engineered strain S071 (<italic>&#x394;ldh</italic>, <italic>&#x394;pta-ackA</italic>, <italic>&#x394;actA</italic>, <italic>&#x394;poxB</italic>, <italic>pyc</italic>
<sup>P458</sup>, <italic>&#x394;pck</italic>_P<sub>tuf</sub>:<italic>Ms.pckG</italic>, P<sub>tuf</sub>:<italic>ppc</italic>, <italic>&#x394;ptsG</italic>)/pGEX4-NCgl0275 under anaerobic conditions. Compared with the initial strain, this engineered strain showed more than 30-fold increase in succinic acid production. (<xref ref-type="bibr" rid="B27">Chung et&#x20;al., 2017</xref>). In the case of <italic>Y. lipolytica</italic>, the highest succinic acid concentration of 110.7&#xa0;g/L was achieved, by the engineered strain <italic>Y. lipolytica</italic> PGC202 (<italic>&#x394;Sdh5</italic>, <italic>&#x394;Ach1</italic>, with <italic>pck</italic> from <italic>S. cerevisiae</italic> overexpression and <italic>SCS2</italic> from <italic>Y. lipolytica</italic> overexpression) in fed-batch cultivation using glycerol without pH control. Compared with the initial strain, this engineered strain showed 4.3-fold increase and has the highest fermentative succinic acid titer achieved in yeast at low pH condition (<xref ref-type="bibr" rid="B31">Cui et&#x20;al., 2017</xref>). For <italic>E.&#x20;coli</italic>, metabolic engineering strategies could be used to improve its succinic acid biosynthesis ability. Wu et&#x20;al. constructed an engineered strain <italic>E.&#x20;coli</italic> K12 (<italic>&#x394;pfl, &#x394;ldhA, &#x394;ptsG</italic>)/pMD19T-<italic>gadBC</italic>. This strain could produce 32.01&#xa0;g/L succinic acid at pH 5.6, which was 2.6-fold higher than the initial strain (<xref ref-type="bibr" rid="B131">Wu et&#x20;al., 2017</xref>). These metabolic engineering producers have shown high production efficiency, demonstrating the great potential of the production of industrially competitive bio-based succinic&#x20;acid.</p>
<p>In this review, several different typical succinic acid biosynthetic pathways reported in recent years are summarized, and the main metabolic engineering strategies to improve the production efficiency are presented in detail. Additionally, the main challenges as well as the future perspectives for succinic acid biosynthesis are discussed.</p>
</sec>
<sec id="s2">
<title>2 Biosynthetic Pathway of Succinic Acid</title>
<p>To date, seven natural or artificial succinic acid biosynthesis pathways have been reported in the literature (<xref ref-type="fig" rid="F1">Figure&#x20;1</xref>), including the reductive branch of the TCA cycle coupled to PEP carboxylase (PPC) pathway, the reductive branch of the TCA cycle coupled to PEP carboxykinase (PCK) pathway, the reductive branch of the TCA cycle coupled to pyruvate carboxylase (PYC) pathway, the reductive branch of the TCA cycle coupled to malic enzyme (MAE) pathway, the glyoxylate shunt pathway, the oxidative branch pathway of the TCA cycle, and the 3-hydroxypropionate cycle for the production of succinic acid. Each biosynthesis pathway has its own characteristics that determine the scope of their unique application (<xref ref-type="table" rid="T1">Table&#x20;1</xref>). The reductive branch pathways of the TCA cycle are the main succinic acid-producing approaches under anaerobic conditions (<xref ref-type="bibr" rid="B147">Zhu and Tang, 2017</xref>), while the other pathways can be effective under aerobic conditions. In the next subsections, these different pathways and their specific features are discussed.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Succinic acid production biosynthetic pathways. Abbreviations: PEP, Phosphoenolpyruvic acid; <italic>ldhA</italic>, lactic dehydrogenase; <italic>pfl</italic>, pyruvate formate lyase; <italic>fdh</italic>, formate dehydrogenase; <italic>adhE</italic>, alcohol dehydrogenase; <italic>pta</italic>, phosphotransacetylase; <italic>ackA</italic>, acetate kinase; <italic>gltA</italic>, citrate synthetase; <italic>acnAB</italic>, aconitase; <italic>icd</italic>, isocitrate dehydrogenase; <italic>sucABCD</italic>, succinyl-CoA synthetase; <italic>frdABCD</italic>, succinate dehydrogenase; <italic>fumABC</italic>, fumarate hydratase; <italic>mdh</italic>, malate dehydrogenase; <italic>ppc</italic>, PEP carboxylase; <italic>pck,</italic> PEP carboxykinase; <italic>pyc</italic>, pyruvate carboxylase; <italic>pyk</italic>, pyruvate kinase; <italic>maeAB</italic>, malic enzyme; <italic>acc</italic>, acetyl-CoA carboxylase; <italic>mcr</italic>, malonyl-CoA reductase; <italic>pcc</italic>, propionyl-CoA carboxylase; <italic>pcs</italic>, propionyl-CoA synthase; <italic>mmcEM</italic>, methylmalonyl-CoA epimerase and mutase.</p>
</caption>
<graphic xlink:href="fbioe-10-843887-g001.tif"/>
</fig>
<sec id="s2-1">
<title>2.1 Anaerobic Succinic Acid-Producing Pathways</title>
<p>The reductive branch of the TCA cycle coupled to PEP carboxylase (PPC) for succinic acid formation (rTCA (PPC) pathway), which exists in almost all microbes, is one of the most commonly used processes in bio-based succinic acid production. In this pathway, PEP carboxylase (PPC) converts PEP and CO<sub>2</sub> into oxaloacetate, which is then converted into malate catalyzed by malate dehydrogenase (MDH). Then, malate is transformed into fumarate by fumarate hydratase (FumABC). Finally, fumarate and NADH are turned into succinic acid catalyzed by fumarate reductase (FrdABCD). Through this pathway, succinic acid is synthesized from PEP and CO<sub>2</sub> at a stoichiometric ratio of 1:1. Among the components in this process, PPC (EC 4.1.1.31) plays a critical role in CO<sub>2</sub> fixation. Taking <italic>E.&#x20;coli</italic> as an example, PPC is produced during growth on glycolytic substrates (<xref ref-type="bibr" rid="B54">Keseler et&#x20;al., 2011</xref>). PPC catalyzes the carboxylation of PEP with bicarbonate to form oxaloacetate and inorganic phosphate using Mg<sup>2&#x2b;</sup> as a cofactor (<xref ref-type="bibr" rid="B89">Millard et&#x20;al., 1996</xref>; <xref ref-type="bibr" rid="B51">Kai et&#x20;al., 1999</xref>). The main function of PPC is to replenish the oxaloacetate consumed by biosynthetic reactions, and under anaerobic fermentation conditions, it can direct a portion of PEP to succinic acid (<xref ref-type="bibr" rid="B89">Millard et&#x20;al., 1996</xref>). Studies have shown that under a CO<sub>2</sub> atmosphere, <italic>E.&#x20;coli &#x394;ppc</italic> strains grow slower and more poorly than wild-type strains in glucose-based medium (40% reduction in biomass and more than 70% reduction in succinic acid production) (<xref ref-type="bibr" rid="B89">Millard et&#x20;al., 1996</xref>; <xref ref-type="bibr" rid="B4">Ahn et&#x20;al., 2020</xref>). PPC also exhibits high catalytic velocity (the enzymatic activity is 250&#xa0;&#x3bc;mol/min/mg) and high substrate affinity (the <italic>K</italic>
<sub>m</sub> value for HCO<sub>3</sub>
<sup>-</sup> is 0.1&#xa0;mM and the <italic>K</italic>
<sub>m</sub> value for PEP is 0.19&#xa0;mM), which is conducive to succinic acid biosynthesis (<xref ref-type="bibr" rid="B89">Millard et&#x20;al., 1996</xref>; <xref ref-type="bibr" rid="B51">Kai et&#x20;al., 1999</xref>; <xref ref-type="bibr" rid="B114">Tan et&#x20;al., 2013</xref>). Millard et&#x20;al. evaluated the effect of PPC on the amount of succinic acid produced in <italic>E.&#x20;coli</italic> under control of the <italic>tac</italic> promoter. The engineered strain that overexpressed PPC showed a 3.5-fold increase in the concentration of succinic acid, from 3.0&#xa0;g/L in a control culture to 10.7&#xa0;g/L, and the yield showed a 3.75-fold increase, from 0.12&#xa0;mol/mol glucose to 0.45&#xa0;mol/mol glucose (<xref ref-type="table" rid="T3">Table&#x20;3</xref>) (<xref ref-type="bibr" rid="B89">Millard et&#x20;al., 1996</xref>). There seemed to be a positive correlation between PPC activity and succinic acid production, but excessive PPC activity was detrimental to cell growth and succinic acid formation (<xref ref-type="bibr" rid="B114">Tan et&#x20;al., 2013</xref>). Tan et&#x20;al. found higher PPC activity along with higher succinic acid production, when the PPC activity was equal to or less than 0.47&#xa0;U/mg protein (<xref ref-type="bibr" rid="B114">Tan et&#x20;al., 2013</xref>). The reason may have been that the overexpression of PPC caused a shortage of PEP. PEP is also essential for the PEP-PTS (phosphoenolpyruvate-phosphotransferase) system, which has both a transport function and an extensive regulatory function. And the shortage of PEP will lead to a compromise in glucose uptake and cell growth (<xref ref-type="bibr" rid="B38">Gokarn et&#x20;al., 2000</xref>). Therefore, the regulation of PPC expression was significant when using the PPC dependent biosynthesis pathway for succinic acid production.</p>
<p>The reductive branch of the TCA cycle coupled to PEP carboxykinase (PCK) for succinic acid formation (rTCA (PCK) pathway), is another representative succinic acid biosynthesis route that mainly exists in bacteria and fungi, especially in some natural succinic acid producers (<xref ref-type="bibr" rid="B124">Werf et&#x20;al., 1997</xref>; <xref ref-type="bibr" rid="B64">Lee et&#x20;al., 2006</xref>). This process is almost the same as the PPC-dependent pathway, except for the key CO<sub>2</sub>-fixation enzyme. In this pathway, the key CO<sub>2</sub>-fixation enzyme is PCK (EC 4.1.1.31) which can catalyze the carboxylation of PEP with bicarbonate and ADP to form oxaloacetate and ATP. Compared with PPC, the PCK catalytic process is accompanied by the production of energy, and as such it is more suitable for cell growth and succinic acid production (<xref ref-type="bibr" rid="B147">Zhu and Tang, 2017</xref>). However, the overexpression of PCK in <italic>E.&#x20;coli</italic> at low CO<sub>2</sub> concentrations in fact has no effect on succinic acid biosynthesis. PCK can be valuable for succinic acid production but only in the presence of high HCO<sub>3</sub>
<sup>-</sup> concentrations (<xref ref-type="bibr" rid="B89">Millard et&#x20;al., 1996</xref>; <xref ref-type="bibr" rid="B59">Kwon et&#x20;al., 2006</xref>). There are two possible explanations for this result: 1) PCK has low HCO<sub>3</sub>
<sup>-</sup> affinity (the <italic>K</italic>
<sub>m</sub> value for HCO<sub>3</sub>
<sup>-</sup> is 13&#xa0;mM, 130&#x20;times larger than that of PPC, the <italic>K</italic>m value for PEP is 0.07&#xa0;mM and the <italic>K</italic>m value for ADP is 0.05&#xa0;mM); 2) PCK has low catalytic velocity (the enzymatic activity is 28&#xa0;&#x3bc;mol/min/mg, which is just 11.2% of the PPC activity) (<xref ref-type="bibr" rid="B56">Krebs and Bridger, 1980</xref>; <xref ref-type="bibr" rid="B141">Zhang et&#x20;al., 2009a</xref>; <xref ref-type="bibr" rid="B114">Tan et&#x20;al., 2013</xref>). Previous studies have demonstrated that when 20&#xa0;g/L NaHCO<sub>3</sub> was added to a culture, the succinic acid titer in recombinant <italic>E.&#x20;coli</italic> overexpressing PCK was 2.2-fold higher than a wild-type strain, from 6.4&#xa0;g/L in a control culture to 14.2&#xa0;g/L (<xref ref-type="bibr" rid="B59">Kwon et&#x20;al., 2006</xref>). Kim et&#x20;al. found that in wild-type <italic>E.&#x20;coli</italic> K12 cells, PCK overexpression had no effect on succinic acid fermentation, but the overexpression of PCK in an engineered <italic>E.&#x20;coli</italic> K12&#x20;<italic>&#x394;ppc</italic> strain was 6.5-fold higher than <italic>E.&#x20;coli</italic> K12&#x20;<italic>&#x394;ppc</italic>, and rose from 3.1&#xa0;g/L to 20.2&#xa0;g/L (<xref ref-type="table" rid="T3">Table&#x20;3</xref>) (<xref ref-type="bibr" rid="B89">Millard et&#x20;al., 1996</xref>). In addition, the PCK activity was closely related to succinic acid biosynthesis. Tan et&#x20;al. reported that the succinic acid titer and yield were positively correlated with the PCK activity. A 16-fold increase in PCK activity resulted in a 57-fold increase in succinic acid titer (from 4 to 226&#xa0;mM) in <italic>E.&#x20;coli</italic> Suc-T108 (<xref ref-type="bibr" rid="B114">Tan et&#x20;al., 2013</xref>). In some natural succinic acid producers, such as <italic>A. succiniciproducens</italic> (<xref ref-type="bibr" rid="B89">Millard et&#x20;al., 1996</xref>)<italic>, M. succiniciproducens</italic> (<xref ref-type="bibr" rid="B46">Hong et&#x20;al., 2004</xref>; <xref ref-type="bibr" rid="B64">Lee et&#x20;al., 2006</xref>)<italic>,</italic> and <italic>A. succinogenes</italic> (<xref ref-type="bibr" rid="B89">Millard et&#x20;al., 1996</xref>; <xref ref-type="bibr" rid="B124">Werf et&#x20;al., 1997</xref>), PCK is mainly employed in CO<sub>2</sub> fixation and cell growth instead of PPC. Taking <italic>M. succiniciproducens</italic> as an example, genes encoding PPC, PCK, or MAE were separately disrupted, and fermentation results showed that strains with PPC or MAE deletion did not show much effect on succinic acid productivity or cell growth, while the strain with PCK inactivation showed severe growth retardation and a remarkable decrease in succinic acid productivity (<xref ref-type="bibr" rid="B64">Lee et&#x20;al., 2006</xref>). This result was significant because although PCK has a high <italic>K</italic>
<sub>m</sub> value for HCO<sub>3</sub>
<sup>-</sup>, it still plays a major role in succinic acid biosynthesis in <italic>M. succiniciproducens</italic>. Compared with <italic>M. succiniciproducens</italic>, the indispensable feature of PCK was not observed in wild-type <italic>E.&#x20;coli</italic>. It might have been due to the differences in the internal concentration of HCO<sub>3</sub>
<sup>-</sup> in these two organisms (<xref ref-type="bibr" rid="B89">Millard et&#x20;al., 1996</xref>). These results also suggests that the optimization of a CO<sub>2</sub> delivery system and the amelioration of the intracellular inorganic carbon concentration may be a good choice for improving the PCK depended succinic acid biosynthesis route (<xref ref-type="bibr" rid="B132">Xiao et&#x20;al., 2017</xref>). Except for PCK, MDH was reported to be another rate-limiting enzyme for succinic acid production (<xref ref-type="bibr" rid="B46">Hong et&#x20;al., 2004</xref>; <xref ref-type="bibr" rid="B4">Ahn et&#x20;al., 2020</xref>). In <italic>M. succiniciproducens</italic>, MDH reduces oxaloacetate to malate using NADH as a cofactor, but it shows low specific activity and strong uncompetitive inhibition towards oxaloacetate (<xref ref-type="bibr" rid="B4">Ahn et&#x20;al., 2020</xref>). <italic>In silico</italic> simulation suggested that MDH is instrumental in succinic acid production (<xref ref-type="bibr" rid="B4">Ahn et&#x20;al., 2020</xref>). Jung et&#x20;al. reported biochemical and structural analyses of various MDH variants and discovered a key amino acid residue (Gly-11) required for high kinetic efficiency in MDH. After screening, a valuable MDH mutant (MDH-G11Q) was obtained, which had high enzyme activity (2.9-fold increase in activity) and less substrate inhibition (6.4-fold increase in <italic>k</italic>
<sub>
<italic>i</italic>
</sub>) compared with a wild type MDH. Furthermore, the application of this MDH-G11Q mutant in engineering bacteria led to a 1.4-fold increase in succinic acid production, indicating the significance of enzyme optimization in strain development (<xref ref-type="bibr" rid="B25">Choi et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B4">Ahn et&#x20;al., 2020</xref>).</p>
<p>The reductive branch of the TCA cycle coupled to pyruvate carboxylase (PYC) for succinic acid formation (rTCA (PYC) pathway), is widespread in fungi, plants, as well as some bacteria (<xref ref-type="bibr" rid="B90">Modak and Kelly, 1995</xref>), but it is absent in Enterobacteriaceae (<xref ref-type="bibr" rid="B38">Gokarn et&#x20;al., 2000</xref>). In this pathway, PEP is first converted into pyruvate by pyruvate kinase (PYK). Then PYC (EC 6.4.1.1) catalyzes the ATP-dependent carboxylation of pyruvate to produce oxaloacetate. Oxaloacetate is further converted into succinic acid through MDH, FumABC and FrdABCD. As the key CO<sub>2</sub>-fixation step, the reaction catalyzed by PYC also plays an anaplerotic role in the provision of oxaloacetate for maintaining the dynamic balance of the TCA cycle. In <italic>R. etli</italic>, the anaplerotic role of PYC has been shown to be essential for its normal growth (<xref ref-type="bibr" rid="B50">Jitrapakdee et&#x20;al., 2008</xref>), and thus PYC can be considered to be one of the most significant regulatory enzymes in this pathway (<xref ref-type="bibr" rid="B90">Modak and Kelly, 1995</xref>). In most PYC catalytic reactions, acetyl-CoA acts as a positive allosteric activator (<xref ref-type="bibr" rid="B50">Jitrapakdee et&#x20;al., 2008</xref>; <xref ref-type="bibr" rid="B118">Tong, 2013</xref>), except for PYC from <italic>L. lactis</italic>, which is regulated by the bacterial second messenger c-di-AMP (<xref ref-type="bibr" rid="B23">Choi et&#x20;al., 2017</xref>). The PYC depended route is a promising tool for succinic acid biosynthesis. Yan et&#x20;al. reconstructed this pathway in <italic>S. cerevisiae</italic>, and found that the engineered strain showed a 19.3-fold increase in succinic acid production in shaken flasks, rising from 0.32&#xa0;g/L to 6.17&#xa0;g/L (<xref ref-type="bibr" rid="B134">Yan et&#x20;al., 2014</xref>). Chen et&#x20;al. reported that the overexpression of PYC from <italic>R. oryzae</italic> in a <italic>S. cerevisiae&#x394;sdh2</italic> strain resulted in a 1.2-fold increase in the concentration of succinic acid, from 0.709&#xa0;g/L to 0.841&#xa0;g/L (<xref ref-type="table" rid="T3">Table&#x20;3</xref>) (<xref ref-type="bibr" rid="B21">Chen et&#x20;al., 2019</xref>). In addition, the functions of PYC, PPC and MAE on the carboxylation processes for high succinic acid productivity in <italic>E.&#x20;coli</italic> were analyzed <italic>in silico</italic>. According to analysis results, carboxylation reactions catalyzed by PYC were the most suitable ones for obtain high productivity in <italic>E.&#x20;coli</italic>. Furthermore, based on these analysis results, PYC from <italic>C. glutamicum</italic> ATCC13032 was overexpressed in <italic>E.&#x20;coli</italic> ZJG13 and the final succinic acid production was 36.1&#xa0;g/L, with a specific productivity and yield of 2.75&#xa0;mmol&#xa0;g CDW<sup>&#x2212;1</sup> h<sup>&#x2212;1</sup> and 0.72&#xa0;mol&#xa0;mol<sup>&#x2212;1</sup> glucose, respectively (<xref ref-type="table" rid="T3">Table&#x20;3</xref>) (<xref ref-type="bibr" rid="B135">Yang et&#x20;al., 2014</xref>). S&#xe1;nchez et&#x20;al. overexpressed the <italic>L. lactis pyc</italic> gene in <italic>E.&#x20;coli</italic> MG1655 (<italic>&#x394;adhE, &#x394;ldhA</italic>) and found that a 25-fold increasein succinic acid production, from 0.6&#xa0;g/L to 15.6&#xa0;g/L, as well as a 6-fold increase in the yield, from 0.13&#xa0;g/g glucose to 0.78&#xa0;g/g glucose (<xref ref-type="table" rid="T3">Table&#x20;3</xref>) (<xref ref-type="bibr" rid="B100">S&#xe1;nchez et&#x20;al., 2005</xref>).</p>
<p>The reductive branch of the TCA cycle coupled to malic enzyme (MAE) for succinic acid formation (rTCA (MAE) pathway), is shorter than the PYC dependent pathway. In the MAE dependent pathway, pyruvate and CO<sub>2</sub> are directly converted into malate by malic enzyme, and malate is further converted into succinic acid through FumABC and FrdABCD. There are two forms of malic enzymes: MaeA (EC 1.1.1.38) and MaeB (EC 1.1.1.40), which can use NADH and NADPH as electron donors, respectively. Stols et&#x20;al. overexpressed MAE from <italic>A. suum</italic> in <italic>E.&#x20;coli</italic> NZN111 to produce succinic acid, resulting in a 2.9-fold increase, from 2.45&#xa0;g/L to 7.07&#xa0;g/L (<xref ref-type="table" rid="T3">Table&#x20;3</xref>) (<xref ref-type="bibr" rid="B112">Stols et&#x20;al., 1997</xref>). Kwon et&#x20;al. cloned MaeA and MaeB, derived from <italic>E.&#x20;coli</italic> W3110, and overexpressed them in <italic>E.&#x20;coli</italic> W3110 under anaerobic conditions. They found that the enzyme activities of overexpressed MaeA and MaeB were 2.34 and 1.69&#xa0;&#x3bc;mol&#xa0;min<sup>&#x2212;1</sup>mg<sub>protein</sub>
<sup>&#x2212;1</sup>, whereas their activities were only 0.82 and 0.01&#xa0;&#x3bc;mol&#xa0;min<sup>&#x2212;1</sup>mg<sub>protein</sub>
<sup>&#x2212;1</sup> in the wild-type W3110 strain, respectively (<xref ref-type="bibr" rid="B58">Kwon et&#x20;al., 2007</xref>). Furthermore, the succinic acid yields were measured in different strains. MaeB overexpression resulted in a 2.4-fold increase in succinic acid production, to 15.43&#xa0;mmol/L, compared with 6.41&#xa0;mmol/L in wild-type <italic>E.&#x20;coli</italic> W3110. However, MaeA overexpression resulted in just 6.69&#xa0;mmol/L succinic acid, which was similar to a wild-type strain under the same anaerobic fermentation conditions (<xref ref-type="bibr" rid="B58">Kwon et&#x20;al., 2007</xref>). In this study, there was a negative correlation between succinic acid production and the activities of MaeA and MaeB. The main reason for this result might have been related to the differences in the intracellular co-substrate availability of MaeA and MaeB. The intracellular concentration of NADPH was 146&#xa0;&#x3bc;mol/L, which was 9.12-fold higher than the 16&#xa0;&#x3bc;mol/L of NADH intracellular concentration (<xref ref-type="bibr" rid="B12">Bochner and Ames, 1982</xref>; <xref ref-type="bibr" rid="B58">Kwon et&#x20;al., 2007</xref>). Correspondingly, NADPH-dependent MaeB showed an advantage over the NADH-dependent MaeA, which would encourage CO<sub>2</sub> fixation by MaeB over by MaeA in wild-type <italic>E.&#x20;coli</italic> (<xref ref-type="bibr" rid="B58">Kwon et&#x20;al., 2007</xref>). In addition, the reaction catalyzed by MAE is reversible and this enzyme prefers to form pyruvate, which is unfavorable for succinic acid formation (<xref ref-type="bibr" rid="B45">Hong and Lee, 2002</xref>). The <italic>K</italic>
<sub>m</sub> values of MAE for malate and pyruvate in <italic>E.&#x20;coli</italic> are 0.4 and 16&#xa0;mM, respectively. Similarly, the <italic>K</italic>
<sub>m</sub> values of MAE in <italic>C. glutamicum</italic>are 3.8&#xa0;mM for malate and 13.8&#xa0;mM for pyruvate, respectively (<xref ref-type="bibr" rid="B111">Stols and Donnelly, 1997</xref>; <xref ref-type="bibr" rid="B40">Gourdon et&#x20;al., 2000</xref>). This indicates that sufficiently high intracellular pyruvate concentrations may have a significant influence to overcome the unfavorable equilibrium of MAE catalytic processes. However, the wild-type strain is unable to accumulate a sufficiently high pyruvate concentration to allow MAE to be effective for producing excessive malate (<xref ref-type="bibr" rid="B112">Stols et&#x20;al., 1997</xref>). Therefore, the enhancement of the PYK catalytic process, which can convert PEP and ADP into pyruvate and ATP, maybe a good choice for intracellular pyruvate enrichment. In some natural succinic acid producers, this reaction is also closely related to normal metabolic activity. Taking <italic>M. succiniciproducens</italic> as an example, Lee found that PYK operates by providing the pyruvate and ATP required for cell growth, as its pyruvate concentration increases with cell growth and remains constant after cell growth has stopped (<xref ref-type="bibr" rid="B64">Lee et&#x20;al., 2006</xref>).</p>
</sec>
<sec id="s2-2">
<title>2.2 Aerobic Succinic Acid-Producing Pathways</title>
<p>Although high productivities and yields of succinic acid can be achieved through anaerobic biosynthesis pathways, some drawbacks still exist with using these pathways, such as their slow carbon throughput, limitation of NADH availability (2&#xa0;mol of NADH are required for 1&#xa0;mol succinic acid formation) and poor cell growth (<xref ref-type="bibr" rid="B135">Yang et&#x20;al., 2014</xref>). One solution is to produce succinic acid under aerobic conditions, which can generate higher biomass and extensive energy with O<sub>2</sub> as the electron acceptor (<xref ref-type="bibr" rid="B73">Lin et&#x20;al., 2005a</xref>; <xref ref-type="bibr" rid="B74">2005b</xref>; <xref ref-type="bibr" rid="B135">Yang et&#x20;al., 2014</xref>). The oxidative branch pathway of the TCA cycle (oTCA pathway) is one of the candidate aerobic biosynthesis routes for succinic acid production. In this pathway, acetyl-CoA and oxaloacetate are converted into succinic acid through citrate synthetase (GltA), aconitase (AcnAB), isocitrate dehydrogenase (ICD), and Succinyl-CoA synthetase (SucABCD), accompanied by the synthesis of NADH at a stoichiometric ratio of 2:1. Although succinic acid can be generated by oTCA under aerobic conditions, most of it will be further converted in the TCA cycle or to biomass and cannot be excreted from the cells. Thus, the metabolic engineering studies are necessary to improve its yield. Taking <italic>E.&#x20;coli</italic> as an example, succinic acid is a minor fermentation product under anaerobic conditions. Under aerobic conditions, however, succinic acid is only an intermediate of the TCA cycle and cannot be detected in the extracellular medium (<xref ref-type="bibr" rid="B28">Clark, 1989</xref>; <xref ref-type="bibr" rid="B74">Lin et&#x20;al., 2005b</xref>). Correspondingly, acetate is the main byproduct under the same aerobic conditions (<xref ref-type="bibr" rid="B74">Lin et&#x20;al., 2005b</xref>). In order to produce succinic acid as a major product aerobically, Lin et&#x20;al. created a mutant <italic>E.&#x20;coli</italic> HL27659k (pKK313) strain that overexpressed of <italic>S. vulgare pepc</italic> and had five enzymes inactivated: <italic>&#x394;sdhAB, &#x394;(ackA-pta), &#x394;poxB, &#x394;iclR, and&#x394;ptsG.</italic> This mutant strain could use both the oxidative branch pathway of the TCA cycle and the glyoxylate shunt pathway to produce succinic acid under aerobic conditions, and its maximum theoretical succinic acid yield could reach 1.0&#xa0;mol/mol glucose consumed (<xref ref-type="bibr" rid="B70">Lin et&#x20;al., 2005c</xref>). Fed-batch fermentation results showed that this strain could produce 58.3&#xa0;g/L of succinic acid under complete aerobic conditions with a yield of 0.94&#xa0;mol/mol glucose consumed (<xref ref-type="table" rid="T3">Table&#x20;3</xref>) (<xref ref-type="bibr" rid="B74">Lin et&#x20;al., 2005b</xref>; <xref ref-type="bibr" rid="B71">2005d</xref>). Arikawa et&#x20;al. constructed a <italic>Saccharomyces cerevisiae</italic> mutant with fumarate reductase (FRDS) and succinate dehydrogenase (SDH1) inactivated. However, under aerobic conditions, this mutant strain could synthesize succinic acid through the oxidative branch pathway of the TCA cycle and the succinic acid yield showed a 2.7-fold increase compared with the parental strain (<xref ref-type="bibr" rid="B6">Arikawa et&#x20;al., 1998</xref>). <italic>S. cerevisiae</italic> exhibits a high tolerance to low pH values, which makes it superior for succinic acid production (<xref ref-type="bibr" rid="B97">Qiang et&#x20;al., 2010</xref>). These results were significant and Lin et&#x20;al. inferred the potential of the oTCA pathway for aerobic succinic acid biosynthesis (<xref ref-type="bibr" rid="B74">Lin et&#x20;al., 2005b</xref>).</p>
<p>The glyoxylate shunt pathway (GAC pathway) is another aerobic succinic acid biosynthesis route. In this process, 2&#xa0;mol of acetyl-CoA and 1&#xa0;mol of oxalacetate are converted into 1&#xa0;mol of malate and 1&#xa0;mol of succinic acid by citrate synthetase (GltA), aconitase (AcnAB) and isocitrate lyase (AceAB). Compared with the oxidative branch pathway of the TCA cycle, this process bypasses the two oxidative steps where CO<sub>2</sub> is released, and thus it is considered to be an atom-economic aerobic pathway (<xref ref-type="bibr" rid="B72">Lin et&#x20;al., 2004</xref>). Additionally, malate is produced as the main byproduct in the glyoxylate shunt pathway. Malate can be catalyzed by malate dehydrogenase (MDH) to generate NADH and regeneration of oxaloacetate. Under anaerobic conditions, 1&#xa0;mol of malate can also be further transformed into 1&#xa0;mol of succinic acid by FumABC and FrdABCD by consuming 1&#xa0;mol of NADH. Compared with the traditional rTCA pathway (formation of 1&#xa0;mol of succinic acid requires 2&#xa0;mol of NADH), the glyoxylate shunt pathway does not contain NADH consumption process. Therefore, its application will be beneficial for solving the limitation of NADH availability during succinic acid biosynthesis (<xref ref-type="bibr" rid="B101">S&#xe1;nchez et&#x20;al., 2005</xref>). Vemuri et&#x20;al. found that in the absence of an additional electron acceptor under dual-phase conditions (an aerobic growth phase followed by an anaerobic production phase), the maximum theoretical succinic acid yield was up to 1.714&#xa0;mol/mol glucose, when 28.6% of the carbon flows to the glyoxylate shunt pathway and 71.4% of the carbon flows to the reductive branch pathway of the TCA cycle. It is worth noting that the maximal yield of succinic acid cannot be achieved without an active glyoxylate shunt pathway (<xref ref-type="bibr" rid="B119">Vemuri et&#x20;al., 2002</xref>). It should be noticed that C2 substrates like acetate or fatty acids are very prominent activators for the glyoxylate shunt pathway under aerobic conditions (<xref ref-type="bibr" rid="B42">Gui et&#x20;al., 1996</xref>). The <italic>aceBAK</italic> operon, which encodes enzymes of the glyoxylate cycle, is controlled by IclR. Under aerobic conditions, acetate can induce <italic>aceBAK</italic> and reduce the repressor activity of IclR, resulting in activation of the glyoxylate cycle (<xref ref-type="bibr" rid="B42">Gui et&#x20;al., 1996</xref>; <xref ref-type="bibr" rid="B101">S&#xe1;nchez et&#x20;al., 2005</xref>). Meanwhile, studies have also revealed that the disruption of <italic>iclR</italic> could dramatically induce the expression of the <italic>aceBAK</italic> operon even when growing on glucose (<xref ref-type="bibr" rid="B42">Gui et&#x20;al., 1996</xref>; <xref ref-type="bibr" rid="B72">Lin et&#x20;al., 2004</xref>; <xref ref-type="bibr" rid="B43">Hendrik et&#x20;al., 2011</xref>). Thus, the inactivation of <italic>iclR</italic> is significant for activating the glyoxylate shunt pathway for succinic acid production (<xref ref-type="bibr" rid="B101">S&#xe1;nchez et&#x20;al., 2005</xref>). Lin et&#x20;al. constructed an engineered <italic>E.&#x20;coli</italic> HL27615k strain with mutations in the TCA cycle (<italic>&#x394;iclR, &#x394;icd,</italic> and <italic>&#x394;sdhAB</italic>) and acetate pathways (<italic>&#x394;poxB,</italic> and <italic>&#x394;ackA-pta</italic>) for maximal aerobic succinic acid production through the glyoxylate shunt pathway. The results of aerobic batch fermentation showed that the succinic acid production reached 43&#xa0;mM with a yield of 0.7, which was close to the maximum theoretical yield of 1&#xa0;mol/mol glucose (<xref ref-type="bibr" rid="B72">Lin et&#x20;al., 2004</xref>). Except for the absence of the <italic>iclR</italic> mutation, Zhu et&#x20;al. demonstrated that the glyoxylate shunt pathway could also be activated by deleting other relevant genes in <italic>E.&#x20;coli</italic> under anaerobic conditions. The key genes included <italic>ackA</italic> (a gene encoding an acetate kinase) and <italic>pta</italic> (a gene encoding a phosphotransacetylase). Metabolic flux analysis reflected that the carbon flow shunted to the glyoxylate pathway from oxalacetate in wild-type <italic>E.&#x20;coli</italic> DY329 was 0 and 31% in the mutant YJ003 (<italic>&#x394;ackA, &#x394;pta, &#x394;ldhA,</italic> and <italic>&#x394;pstG</italic>). In addition, the succinic acid production also showed a 6-fold increase, from 25.13&#xa0;mM in DY329 to 150.78&#xa0;mM in YJ003, implying the importance of the activation of the glyoxylate shunt pathway (<xref ref-type="bibr" rid="B150">Zhu et&#x20;al., 2014</xref>).</p>
<p>The 3-hydroxypropionate cycle is one of the natural aerobic CO<sub>2</sub>-fixation pathways, and mainly exists in photosynthetic green nonsulfur bacteria (<xref ref-type="bibr" rid="B44">Herter et&#x20;al., 2001</xref>). This cycle is complex, containing 16 enzymatic reaction steps that are catalyzed by 13 enzymes (<xref ref-type="bibr" rid="B39">Gong et&#x20;al., 2016</xref>). Liu et&#x20;al. introduced part of this cycle into recombinant <italic>E.&#x20;coli</italic> for succinic acid production (3HP pathway) (<xref ref-type="bibr" rid="B81">Liu et&#x20;al., 2020</xref>). In this process, acetyl-CoA is carboxylated by acetyl-CoA carboxylase (ACC) to generate malony-CoA. Malony-CoA is converted into propionyl-CoA by malonyl-CoA reductase (MCR) and propionyl-CoA synthase (PCS). Then propionyl-CoA is carboxylated by propionyl-CoA carboxylase (PCC) to generate (<italic>S</italic>)-methylmalonyl-CoA. Next, methylmalonyl-CoA epimerase (MmcE) and methylmalonyl-CoA mutase (MmcM) convert (<italic>S</italic>)-methylmalonyl-CoA into its isomer succinyl-CoA. Finally, succinyl-CoA is deesterificated by succinyl-CoA synthetase (SucCD) to generate succinic acid (<xref ref-type="bibr" rid="B154">Menendez et&#x20;al., 1999</xref>; <xref ref-type="bibr" rid="B81">Liu et&#x20;al., 2020</xref>). The conversion of 1&#xa0;mol of acetyl-CoA into 1&#xa0;mol of succinic acid via the 3-hydroxypropionate cycle can fix 2&#xa0;mol of CO<sub>2</sub>, which was confirmed by isotope labeling experiments with NaH<sup>13</sup>CO<sub>3</sub> (<xref ref-type="bibr" rid="B81">Liu et&#x20;al., 2020</xref>). Compared with succinic acid production based on carboxylation of PEP or pyruvate, this route showed a higher CO<sub>2</sub> fixation efficiency. Among these pathway, ACC (EC 6.4.1.2) and PCC (EC 6.4.1.3) are the key CO<sub>2</sub>-fixing and rate-limiting enzymes. Both ACC and PCC belong to a subgroup of biotin-dependent short-chain acyl-CoA carboxylases that contain biotin carboxyl carrier protein domain (BCCP), biotin carboxylase domain (BC), and carboxyltransferase domain (CT), and utilize a covalently bound biotin as a cofactor (<xref ref-type="bibr" rid="B128">Wongkittichote et&#x20;al., 2017</xref>; <xref ref-type="bibr" rid="B152">Liu and Jiang, 2021</xref>). The CT domain determines the specificity of the substrate, and these proteins can even work with other BCCP and BC domains from different enzymes (<xref ref-type="bibr" rid="B83">Lombard and Moreira, 2012</xref>; <xref ref-type="bibr" rid="B118">Tong, 2013</xref>). To obtain PCC with high enzymatic activity, Liu et&#x20;al. tested different CT subunits of the PCC homologs from diverse bacterial species and developed a direct evolution strategy to further optimize this protein. A highly active PCC mutant (PccB<sub>BS</sub>-N220I/I391T) was obtained, which showed a 94-fold increase in overall catalytic efficiency indicated by <italic>k</italic>
<sub>cat</sub>/<italic>K</italic>
<sub>m</sub> compared with a wild-type PCC. In addition, the application of this PCC mutant resulted in a 1.5-fold increase in succinic acid production compared to the engineered strain with wild-type PCC, which indicated the significance of this rate-limiting enzyme engineering strategy for microbial production (<xref ref-type="bibr" rid="B81">Liu et&#x20;al., 2020</xref>). ACC acts as another CO<sub>2</sub>-fixing enzyme and ACC is essential for most living organism&#x2019;s growth (<xref ref-type="bibr" rid="B7">Baba et&#x20;al., 2006</xref>). The intracellular concentration of its carboxylation product (malonyl-CoA) is tightly regulated to be very low, leading to limited production of ACC-derived compounds (<xref ref-type="bibr" rid="B140">Zha et&#x20;al., 2009</xref>; <xref ref-type="bibr" rid="B79">Liu et&#x20;al., 2010</xref>). It has been reported that ACC is negatively regulated by AMP-activated serine/threonine protein kinase (Snf1) in <italic>S. cerevisiae</italic> when glucose is depleted. Moreover, the phosphorylation triggered by Snf1 at one or more serine residues results in the deactivation of ACC (<xref ref-type="bibr" rid="B129">Woods et&#x20;al., 1994</xref>; <xref ref-type="bibr" rid="B104">Scott et&#x20;al., 2002</xref>). Jin et&#x20;al. identified a critical amino acid (Ser-1157) responsible for deactivation via phosphorylation and mutated it to an alanine. The <italic>in&#x20;vitro</italic> activity results showed that this ACC mutant (ACC-S1157A) resulted in 9-fold higher specific activity relative to wild-type ACC (<xref ref-type="bibr" rid="B22">Choi and Silva, 2014</xref>). Shi et&#x20;al. demonstrated that introduction of this S659A mutation in ACC-S1157A could also lead to an enhanced enzyme activity with 1.72-fold increase (<xref ref-type="bibr" rid="B105">Shi et&#x20;al., 2014</xref>). Further utilization of these modified acetyl-CoA carboxylase will be beneficial for product biosynthesis built from malonyl-CoA, such as succinic acid (<xref ref-type="bibr" rid="B22">Choi and Silva, 2014</xref>). Except for ACC and PCC, malonyl-CoA reductase (MCR), a characteristic enzyme of the 3-hydroxypropionate cycle, is regarded as another rate-limiting enzyme (<xref ref-type="bibr" rid="B35">Fixation et&#x20;al., 2002</xref>). MCR catalyzes a two-step NADPH-dependent reduction of malonyl-CoA to 3-hydroxypropionate, and malonate semialdehyde has been suggested to be the likely free intermediate (<xref ref-type="bibr" rid="B35">Fixation et&#x20;al., 2002</xref>; <xref ref-type="bibr" rid="B77">Liu et&#x20;al., 2013</xref>). Liu et&#x20;al. demonstrated that MCR, a natural fusion protein of two short-chain dehydrogenase/reductases, has higher enzyme activity when dissected into two functionally individual fragments, including an MCR-C fragment (amino acids 550&#x2013;1,219) and MCR-N fragment (amino acids 1&#x2013;549) (<xref ref-type="bibr" rid="B77">Liu et&#x20;al., 2013</xref>). Further studies indicated that the initial reduction of malonyl-CoA to malonate semialdehyde catalyzed by MCR-C was the rate-limiting step of MCR (<xref ref-type="bibr" rid="B77">Liu et&#x20;al., 2013</xref>; <xref ref-type="bibr" rid="B78">Liu et&#x20;al., 2016</xref>). Liu et&#x20;al. developed a direct evolution strategy to further optimize MCR-C. A triple MCR-C mutant (N940V/K1106W/S1114R) was obtained, which showed a 5.54-fold increase in enzyme activity. Combined with fine tuning of the MCR-N expression levels and culture condition optimization, the 3-hydroxypropionate yield showed a 270-fold increase, which could relieve the pressure of being the rate-limiting step in succinic acid biosynthesis (<xref ref-type="bibr" rid="B78">Liu et&#x20;al., 2016</xref>). Although some progress has been achieved in this succinic acid pathway, some problems are still worthy of attention. The main challenge is that significant amounts of ATP and reducing power (3ATP and 3NADPH) are consumed from one molecule acetyl-CoA to one molecule succinic acid. Using fatty acids as carbon sources or feeding electricity to bacteria to produce intracellular energy may be optional promising approaches (<xref ref-type="bibr" rid="B20">Chen et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B76">Liu et&#x20;al., 2019</xref>).</p>
</sec>
</sec>
<sec id="s3">
<title>3 Metabolic Engineering for Enhancing Succinic Acid Biosynthesis</title>
<p>Up to now, the bio-based succinic acid synthetic process has become increasingly mature. There are several strategies to enhance succinic acid biosynthesis, which mainly include redirecting carbon flux, balancing the redox ratio (NADH/NAD<sup>&#x2b;</sup>) and optimizing CO<sub>2</sub> supplementation. And the different strategies will be discussed in more details in the later chapters.</p>
<sec id="s3-1">
<title>3.1 Redirecting Carbon Flux</title>
<p>Whether under anaerobic or aerobic conditions, succinic acid is not the main product of many microbes. In general, microbes preferentially accumulate substances such as acetate, lactate, and ethanol etc. These by-product pathways compete with the succinic acid pathway for ATP or reducing power. Therefore, it is necessary to redirect the carbon flux from these competitive pathways into succinic acid production (<xref ref-type="bibr" rid="B68">Li et&#x20;al., 2020</xref>). The redirection methods often used mainly include blocking these competitive pathways and regulating succinic acid biosynthesis pathways.</p>
<sec id="s3-1-1">
<title>3.1.1 Blocking Competitive Pathways</title>
<p>As the main competing by-products, acetate, lactate, and ethanol are the targets of metabolic regulation, and deletion of the genes related to their production is usually performed. Specifically, single deletion of <italic>ldhA</italic> (encoding lactate dehydrogenase), which can convert pyruvate and NADH into lactate and NAD<sup>&#x2b;</sup> in <italic>E.&#x20;coli</italic>, led to a 1.6-fold increase in succinic acid yield under anaerobic conditions, from 0.13 to 0.21&#xa0;mol/mol glucose. Meanwhile, the lactate concentration of this <italic>&#x394;ldhA</italic> mutant was 92% lower than a wild-type strain, dropping from 214 to 17&#xa0;mM (<xref ref-type="bibr" rid="B142">Zhang et&#x20;al., 2009b</xref>). Single deletion of <italic>adhE</italic> (encoding alcohol dehydrogenase), which converts acetyl-CoA and NADH into ethanol and NAD<sup>&#x2b;</sup>, resulted in a 1.125-fold increase in succinic acid yield. Correspondingly, the ethanol concentration of this <italic>&#x394;adhE</italic> mutant was 0, compared with 133&#xa0;mM in a wild-type strain (<xref ref-type="bibr" rid="B142">Zhang et&#x20;al., 2009b</xref>). Zhang et&#x20;al. constructed an <italic>E.&#x20;coli &#x394;ldhA&#x394;adhE</italic> double mutant strain, which showed a 1.77-fold increase in succinic acid yield, and lactate and ethanol were not detected in its fermentation broth (<xref ref-type="bibr" rid="B142">Zhang et&#x20;al., 2009b</xref>). There are two major acetate-producing pathways in <italic>E.&#x20;coli</italic>, respectively through the enzyme pyruvate oxidase (encoded by <italic>poxB</italic>) and acetate kinase/phosphotransacetylase (encoded by <italic>ackA-pta</italic>). Pyruvate oxidase catalyzes the decarboxylation of pyruvate to acetate and CO<sub>2</sub>, and is more active in the stationary stage of cell growth (<xref ref-type="bibr" rid="B33">Mey et&#x20;al., 2007</xref>; <xref ref-type="bibr" rid="B34">Dittrich, 2010</xref>). Ahmed et&#x20;al. demonstrated that PoxB was useful for overall metabolism functioning and single deletion of <italic>poxB</italic> led to a decrease of 24% in biomass. Thus, they suggested that employing <italic>poxB</italic> served as a method to decrease acetate production (<xref ref-type="bibr" rid="B1">Abdel-Hamid et&#x20;al., 2001</xref>). The <italic>ackA-pta</italic> pathway, which is more active in the exponential phases of cell growth, involves two consecutive reactions. PTA converts acetyl-CoA and Pi into acetyl phosphate and CoA. AckA then converts acetyl phosphate and ADP into acetate and ATP (<xref ref-type="bibr" rid="B150">Zhu et&#x20;al., 2014</xref>). It was demonstrated that <italic>pta</italic> mutants grow more slowly than wild-type strains. The specific rate of growth of <italic>E.&#x20;coli</italic> MG1655 &#x394;<italic>pta</italic> was 9.3% lower than the parent strain under aerobic conditions and 37.2% lower under anaerobic conditions (<xref ref-type="bibr" rid="B103">Sch&#xfc;tze et&#x20;al., 2020</xref>). This may have been due to pyruvate accumulation, acetyl-P accumulation or a redox imbalance in <italic>pta</italic> mutants (<xref ref-type="bibr" rid="B127">Wolfe, 2005</xref>). Wolfe reported that <italic>pta</italic> mutants or <italic>ackA-pta</italic> mutants did not accumulate extracellular acetate, and <italic>ackA</italic> mutants could accumulate small amounts of acetate (<xref ref-type="bibr" rid="B127">Wolfe, 2005</xref>). Compared to a particular mutation, the combination of mutations was proved more useful for enhancing succinic acid production in many cases. Zhang et&#x20;al. constructed a <italic>&#x394;ldhA&#x394;adhE&#x394;ackA</italic> triple mutant, which showed a 3.2-fold increase in succinic acid concentration and a 5.4-fold increase in yield (<xref ref-type="bibr" rid="B142">Zhang et&#x20;al., 2009b</xref>). Lu et&#x20;al. constructed a <italic>E.&#x20;coli</italic> JH208 (<italic>&#x394;ldhA</italic>, <italic>&#x394;pflB</italic>, <italic>&#x394;adhE, &#x394;poxB, &#x394;ackA, &#x394;cscR</italic>) mutant strain, and found that this mutant could produce 48.46&#xa0;g/L succinic acid in 46&#xa0;h with the productivity of 1.01&#xa0;g/L/h and the yield of 0.83&#xa0;g/g sucrose. Compared with the initial strain, the production efficiency of succinic acid has been improved 72% (<xref ref-type="bibr" rid="B85">Lu et&#x20;al., 2015</xref>). Olajuyin et&#x20;al. constructed an <italic>E.&#x20;coli</italic> K-12 (<italic>&#x394;ldhA</italic>, <italic>&#x394;pflB</italic>, <italic>&#x394;poxB, &#x394;pta-ackA</italic>) mutant for succinic acid production, the concentration and molar yield of succinic acid were respectively 22.40&#x20;&#xb1; 0.12&#xa0;g/L and 1.13&#x20;&#xb1; 0.02&#xa0;mol/mol total sugar after 72&#xa0;h dual phase fermentation, and the final concentration of succinic acid was 6.2-fold higher than the wild-type strain (<xref ref-type="bibr" rid="B93">Olajuyin et&#x20;al., 2016</xref>). These results indicated the necessity of blocking competitive pathways for improving succinic acid&#x20;yield.</p>
</sec>
<sec id="s3-1-2">
<title>3.1.2 Regulating Succinic Acid Pathways</title>
<p>Direct overexpression of important enzymes (mentioned in <xref ref-type="sec" rid="s2">Section 2</xref>) is the most frequently used method for enhancing the production of the succinic acid pathways. However, biosynthetic processes are usually regulated by multiple genes, and positive expected results are difficult to obtain by simple genetic engineering. In recent years, investigation of the global regulation of gene expression has been shown to be effective for solving the limitations of classical metabolic engineering approaches (<xref ref-type="bibr" rid="B26">Chong et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B147">Zhu and Tang, 2017</xref>). Some global regulators are good targets for improving the succinic acid biosynthesis process, such as ArcA, Crp, Cya and Cra. Among them, the Arc (anoxic respiration control) system composed of ArcA and ArcB regulates gene expression in response to redox conditions (<xref ref-type="bibr" rid="B80">Liu and Wulf, 2004</xref>; <xref ref-type="bibr" rid="B113">Sun et&#x20;al., 2020</xref>). As reported, ArcA, when phosphorylated, represses the expressions of the genes involved in the TCA cycle and the glyoxylate shunt genes (<xref ref-type="bibr" rid="B108">Shimizu, 2013</xref>). Knocking out of ArcA did not affect the growth rate and the glucose uptake rate, but increased the TCA cycle activity by over 60% under aerobic conditions. It is significant for the oTCA pathway and the glyoxylate shunt pathway (<xref ref-type="bibr" rid="B95">Perrenoud and Sauer, 2005</xref>). Crp (cyclic AMP receptor protein) is the catabolite repressor that is activated by adenylate cyclase (Cya)-synthesized cAMP (<xref ref-type="bibr" rid="B145">Zhang et&#x20;al., 2014</xref>). Crp/cAMP is a positive transcriptional regulator for <italic>mdh, ptsG, pckA, sdhABCD, acnAB, gltA</italic> (<xref ref-type="bibr" rid="B95">Perrenoud and Sauer, 2005</xref>; <xref ref-type="bibr" rid="B126">Wilfredo et&#x20;al., 2021</xref>). Research showed that knocking out of Crp or Cya would decrease the growth rate, the glucose consumption rate and reduce the metabolic flux from PEP to oxaloacetate (<xref ref-type="bibr" rid="B95">Perrenoud and Sauer, 2005</xref>). Catabolite repressor/activator (Cra), also known as FruR, is an important global transcription factor, and it plays a key role in balancing the levels of the genes involved in carbon metabolism in <italic>E.&#x20;coli</italic> (<xref ref-type="bibr" rid="B5">Akira, 2000</xref>; <xref ref-type="bibr" rid="B48">Ishihama, 2010</xref>; <xref ref-type="bibr" rid="B107">Shimada et&#x20;al., 2011</xref>). Cra can activate genes related to the tricarboxylic acid cycle, the glyoxylate shunt pathway (<xref ref-type="bibr" rid="B30">Cozzone and El-Mansi, 2005</xref>; <xref ref-type="bibr" rid="B32">Dayanidhi et&#x20;al., 2008</xref>; <xref ref-type="bibr" rid="B107">Shimada et&#x20;al., 2011</xref>), and negatively affects genes related with the ED and glycolytic pathways (<xref ref-type="bibr" rid="B99">Ramseier, 1996</xref>; <xref ref-type="bibr" rid="B102">Sarkar et&#x20;al., 2008</xref>; <xref ref-type="bibr" rid="B98">Ramseier et&#x20;al., 2010</xref>). In a study from Zhu et&#x20;al., Cra was first engineered for achieving high product concentration through error-prone PCR. After screening and mutation site integration, a high succinic acid producing mutant strain (Cra-R57K/A58G/G59Q/R60Q/S75H/T76Y/D148I/R149I), was obtained. This strain (<italic>E.&#x20;coli</italic> W1485 (<italic>&#x394;pflAB, &#x394;ldhA, &#x394;ptsG</italic>)/pTrc-mutant <italic>cra</italic>) produced succinic acid to a concentration of 79.8&#xa0;g/L, which was 22.8% higher than a control strain (<italic>E.&#x20;coli</italic> W1485 (<italic>&#x394;pflAB, &#x394;ldhA, &#x394;ptsG</italic>)/pTrc) (<xref ref-type="bibr" rid="B148">Zhu et&#x20;al., 2016</xref>). Further studies demonstrated that the significant increase of succinic acid in a Cra mutant may be caused by the activation of PEP carboxylation, reductive branches of the TCA cycle and the glyoxylate pathway (<xref ref-type="bibr" rid="B148">Zhu et&#x20;al., 2016</xref>). Meanwhile, Li et&#x20;al. first reported a positive correlation between succinic acid production and the affinity of Cra for its effector fructose-1,6-bisphosphate (FBP) in <italic>E.&#x20;coli</italic> (<xref ref-type="bibr" rid="B122">Wei et&#x20;al., 2016</xref>). To heighten this affinity, a semi-rational strategy based on computer-assisted virtual saturation mutagenesis was designed, and a Cra mutant (D101R/D148R/G274R) was obtained. Compared with wild-type Cra (the <italic>K</italic>
<sub>
<italic>d</italic>
</sub> of Cra-FBP was 1,360&#x20;&#xb1; 6.2&#xa0;nM), the triple mutant Cra showed a high affinity with its effector fructose-1,6-bisphosphate (FBP) (the <italic>K</italic>
<sub>
<italic>d</italic>
</sub> of Cra-FBP was 154.2&#x20;&#xb1; 4.3&#xa0;nM). Further experimental results indicated that this enhanced affinity increased the activation of succinic acid biosynthetic pathways, especially <italic>pck</italic> and <italic>aceB</italic>, and led to a succinic acid concentration of 92.7&#xa0;g/L in engineered strain (<italic>E.&#x20;coli</italic> W1485 (<italic>&#x394;pflAB, &#x394;ldhA, &#x394;ptsG</italic>)/pTrc99A-<italic>cra</italic> D101R/D148R/G274R), which was 34% higher than a control strain (<italic>E.&#x20;coli</italic> W1485 (<italic>&#x394;pflAB, &#x394;ldhA, &#x394;ptsG</italic>)/pTrc99A) (<xref ref-type="bibr" rid="B122">Wei et&#x20;al., 2016</xref>). The advantage of using global transcription factors is that they can regulate the expression of multiple pathway-related genes (<xref ref-type="bibr" rid="B130">Wu et&#x20;al., 2007</xref>; <xref ref-type="bibr" rid="B122">Wei et&#x20;al., 2016</xref>). In conclusion, these results demonstrate the great potentials of global transcription factors combined with the traditional metabolic engineering strategies in succinic acid production process, and this strategy can also be used as a reference for other valuable chemical biosynthetic pathways.</p>
</sec>
</sec>
<sec id="s3-2">
<title>3.2 Balancing the Redox Ratio (NADH/NAD<sup>&#x2b;</sup>)</title>
<p>The intracellular redox ratio is closely related to metabolite profiles, membrane transport, microbial fitness and cellular functions (<xref ref-type="bibr" rid="B11">Berr&#xed;os-Rivera et&#x20;al., 2004</xref>; <xref ref-type="bibr" rid="B110">Singh et&#x20;al., 2009</xref>). The redox ratio is mainly reflected by the intracellular NADH/NAD<sup>&#x2b;</sup> ratio, which is influenced by several factors, such as the physiological state of a given strain, the oxidation state of carbon sources, and the expression levels of NADH/NAD<sup>&#x2b;</sup>-related enzymes (such as formate dehydrogenase, membrane-bound transhydrogenase, NAD<sup>&#x2b;</sup> dehydrogenase, terminal oxidases and lactic dehydrogenase) (<xref ref-type="bibr" rid="B73">Lin et&#x20;al., 2005</xref>a; <xref ref-type="bibr" rid="B110">Singh et&#x20;al., 2009</xref>). In microbes, both NADH and NAD<sup>&#x2b;</sup> are kept in balance. NADH is oxidized to NAD<sup>&#x2b;</sup> through the oxidative phosphorylation process or fermentation reactions. NADH provides the reducing power for reductive product formation and NAD<sup>&#x2b;</sup> serves as an electron acceptor during substrate degradation (<xref ref-type="bibr" rid="B67">Li et&#x20;al., 2017</xref>). In addition, the appropriate NADH/NAD<sup>&#x2b;</sup> ratio is a major prerequisite of many biosynthetic processes, and it is also crucial for succinic acid production (<xref ref-type="bibr" rid="B143">Zhang Y. et&#x20;al., 2009</xref>; <xref ref-type="bibr" rid="B67">Li et&#x20;al., 2017</xref>).</p>
<p>Taking <italic>E.&#x20;coli</italic> as an example, lactate dehydrogenase (encoded by <italic>ldhA</italic>), which drives the formation of lactate, and pyruvate formate lyase (encoded by <italic>pflB</italic>), which drives the formation of formate and acetyl-CoA derivants (acetate, ethanol), were deleted to redirect the carbon flux towards succinic acid under anaerobic conditions (<xref ref-type="bibr" rid="B109">Singh et&#x20;al., 2010</xref>). This mutant was termed <italic>E.&#x20;coli</italic> NZN111, and it has been considered an excellent candidate as a succinic acid producer (<xref ref-type="bibr" rid="B47">Hui et al., 2009</xref>). However, <italic>E.&#x20;coli</italic> NZN111 lost its ability to ferment glucose anaerobically and accumulates high levels of pyruvate and NADH intracellularly (<xref ref-type="bibr" rid="B130">Wu et&#x20;al., 2007</xref>; <xref ref-type="bibr" rid="B87">Ma et&#x20;al., 2013</xref>). It has been reported that <italic>E.&#x20;coli</italic> NZN111 growth was impaired mainly due to the anomalously high NADH/NAD<sup>&#x2b;</sup> ratio <italic>in vivo</italic>, which was shown to be three times higher than a wild-type <italic>E.&#x20;coli</italic> strain (<xref ref-type="bibr" rid="B110">Singh et&#x20;al., 2009</xref>; <xref ref-type="bibr" rid="B109">Singh et&#x20;al., 2010</xref>). To reduce this NADH/NAD<sup>&#x2b;</sup> ratio, an effective genomic library-based screening approach was employed, and genes including <italic>pfkB</italic> (encoding phosphofructokinase II), <italic>marA</italic> (encoding DNA-binding transcriptional repressor), and <italic>moaE</italic> (encoding the subunit of molybdopterin synthase), were shown to be significant for balancing the redox ratio. Overexpression of these genes was beneficial for succinic acid production, especially <italic>pfkB</italic>, and led to a 7.8-fold increase in M9&#x2b;10&#xa0;g/L glucose medium under microaerobic conditions (that means controlled dosing of small amount of air or oxygen into reactor).</p>
<p>Conversely, deficiency in NADH has a negative impact on succinic acid biosynthesis as well. Except for the glyoxylate shunt pathway, conversion of phosphoenolpyruvate, pyruvate or acetyl-CoA to one molecule of succinic acid requires a minimum of two molecules of reducing equivalents (<xref ref-type="bibr" rid="B70">Lin et&#x20;al., 2005c</xref>). However, only two molecules of NADH can be obtained from one molecule of glucose through the glycolytic pathway. Thus, the shortage of NADH limits the succinic acid production to a theoretical yield of 1&#xa0;mol/mol glucose (<xref ref-type="bibr" rid="B150">Zhu et&#x20;al., 2014</xref>). One solution is to use the glyoxylate shunt pathway (mentioned in <xref ref-type="sec" rid="s2">section 2</xref>), which has a theoretical yield of 1.7&#xa0;mol/mol glucose (<xref ref-type="bibr" rid="B119">Vemuri et&#x20;al., 2002</xref>). Another solution is to provide more NADH. NAD<sup>&#x2b;</sup>-dependent formate dehydrogenase can convert one molecule of formate into one molecule of CO<sub>2</sub> and NADH. In this reaction, formate is one of the main by-products produced by succinic acid producers, while CO<sub>2</sub> and NADH are necessary for succinic acid synthesis. When using glucose as a carbon source, the expression of formate dehydrogenase can double the maximum yield of NADH, from 2 to 4&#xa0;mol NADH/mol glucose consumed (<xref ref-type="bibr" rid="B11">Berr&#xed;os-Rivera et&#x20;al., 2004</xref>). In Grant et&#x20;al., <italic>fdh</italic> (encoding NAD<sup>&#x2b;</sup>-dependent formate dehydrogenase) from <italic>C. boidiniiwas</italic> and <italic>pycA</italic> (encoding pyruvate carboxylase) from <italic>L. lactis</italic> were co-expressed in <italic>E.&#x20;coli</italic> MG1655 (<italic>&#x394;adhE, &#x394;ldhA, &#x394;iclR, &#x394;ack-pta</italic>) under the control of the same promoters (<xref ref-type="bibr" rid="B116">Thakker et&#x20;al., 2011</xref>). Compared with the overexpression of <italic>pyc</italic> alone, this co-expression strain had better succinic acid production capacity. The succinic acid yield at 24&#xa0;h showed a 1.9-fold increase, from 176 to 334&#xa0;mM, and the succinic acid productivity showed a 2-fold increase, from 1 to 2&#xa0;g/L/h. Meanwhile the byproduct formate concentration showed a significant decrease, from 17&#xa0;mM to 0&#x2013;3&#xa0;mM. This indicated that higher NADH availability conditions significantly changed the final metabolite concentration pattern and promoted an increase in the contents of succinic acid. Additionally, providing carbon sources with different oxidation states is also an optional method. Sorbitol, for instance, has a higher NADH maximum theoretical yield (3&#xa0;mol NADH/mol sorbitol) than glucose (<xref ref-type="bibr" rid="B11">Berr&#xed;os-Rivera et&#x20;al., 2004</xref>). It has been reported that using sorbitol can also generate higher yield and productivity of succinic acid (<xref ref-type="bibr" rid="B18">Chatterjee et&#x20;al., 2001</xref>).</p>
</sec>
<sec id="s3-3">
<title>3.3 Optimizing CO<sub>2</sub> Supplementation</title>
<p>In succinic acid biosynthesis, HCO<sub>3</sub>
<sup>-</sup> is the major carboxylation substrate. During fermentation processes, CO<sub>2</sub> that is dissolved in the liquid medium, first crosses the cell membrane through passive diffusion, and is then converted into HCO<sub>3</sub>
<sup>-</sup> in the cytoplasm to participate in carboxylation (<xref ref-type="bibr" rid="B86">Lu et&#x20;al., 2009</xref>). However, the low concentration of CO<sub>2</sub> in the growth medium is the critical limiting step in succinic acid production (<xref ref-type="bibr" rid="B149">Zhu et&#x20;al., 2015</xref>). To date, several strategies have been attempted to improve succinic acid production by optimizing CO<sub>2</sub> supplementation and several satisfying results have been achieved.</p>
<sec id="s3-3-1">
<title>3.3.1 Promoting the Intracellular Conversion of HCO<sub>3</sub>
<sup>-</sup> and CO<sub>2</sub>
</title>
<p>Under anaerobic fermentation conditions, both CO<sub>2</sub> or HCO<sub>3</sub>
<sup>-</sup> can serve as a carboxylation substrate for PEP carboxykinase (PCK), but PCK prefers to use CO<sub>2</sub>, and its catalytic velocity with CO<sub>2</sub> was shown to be 7.6-fold higher than that with HCO<sub>3</sub>
<sup>-</sup> (<xref ref-type="bibr" rid="B29">Cotelesage et&#x20;al., 2007</xref>). Therefore, promoting the intracellular interconversion of HCO<sub>3</sub>
<sup>-</sup> and CO<sub>2</sub> is a way to improve its catalytic efficiency. Carbonic anhydrase (CA), which is an important component of the carboxysome, efficiently converts HCO<sub>3</sub>
<sup>-</sup> to CO<sub>2</sub> (<xref ref-type="bibr" rid="B29">Cotelesage et&#x20;al., 2007</xref>). For improving the carboxylation velocity of PCK, Xiao et&#x20;al. introduced the CA gene from <italic>Synechococcus</italic> sp. PCC7002 into <italic>E.&#x20;coli</italic> Suc-T110 <italic>&#x394;ppc.</italic> Due to the increase of the local CO<sub>2</sub> concentration, the carboxylation rate of PCK showed a 1.6-fold increase from 2.46 to 3.92&#xa0;&#x3bc;mol/min/mg protein. As a result of CA gene overexpression, the succinic acid titer at 36&#xa0;h showed a 35% increase as well (<xref ref-type="bibr" rid="B132">Xiao et&#x20;al., 2017</xref>). These results demonstrated that carbonic anhydrase was useful for improving succinic acid productivity.</p>
</sec>
<sec id="s3-3-2">
<title>3.3.2 Enhancing HCO<sub>3</sub>
<sup>-</sup> Transmembrane Transport</title>
<p>As the major carboxylation substrate, HCO<sub>3</sub>
<sup>-</sup> can also cross the cell membrane through passive diffusion, but the rate is very slow, limiting its direct utilization (<xref ref-type="bibr" rid="B8">Badger and Price, 2003</xref>). One feasible strategy to increase intracellular HCO<sub>3</sub>
<sup>-</sup> concentration is to use bicarbonate transporters. Among these, SbtA and BicA have been shown to be more efficient (<xref ref-type="bibr" rid="B96">Price et&#x20;al., 2004</xref>). BicA, which was identified from <italic>Synechococcus</italic> sp. PCC7002, is a Na<sup>&#x2b;</sup>-dependent transporter, and it has low transport affinity but a high flux rate (<xref ref-type="bibr" rid="B96">Price et&#x20;al., 2004</xref>). SbtA-mediated transport, which was identified from <italic>Synechocystis</italic> PCC6803, is also Na<sup>&#x2b;</sup>-dependent. Meanwhile, it can be induced by low CO<sub>2</sub> levels and shows a relatively high affinity for HCO<sub>3</sub>
<sup>-</sup> (<xref ref-type="bibr" rid="B106">Shibata et&#x20;al., 2002</xref>; <xref ref-type="bibr" rid="B149">Zhu et&#x20;al., 2015</xref>). To optimize succinic acid production, Xiao et&#x20;al. overexpressed the <italic>bicA</italic> and <italic>pck</italic> genes in <italic>E.&#x20;coli</italic>, and reported that the final cell density and succinic acid titers at 36&#xa0;h were 29 and 22% higher than those of control strains, respectively (<xref ref-type="bibr" rid="B132">Xiao et&#x20;al., 2017</xref>). Zhu et&#x20;al. contrasted SbtA and BicA in <italic>E.&#x20;coli</italic> AFP111, and demonstrated that overexpression of <italic>sbtA</italic> or/and <italic>bicA</italic> genes showed a positive effect on CO<sub>2</sub> absorption but a negative effect on succinic acid biosynthesis. Meanwhile, they found that the succinic acid concentration was improved only when bicarbonate transporters and carboxylase (PCK or PPC) were co-expressed. Among these, co-overexpression of the <italic>sbtA</italic> and <italic>pck</italic> genes was superior, and led to a 15% increase in succinic production (<xref ref-type="bibr" rid="B149">Zhu et&#x20;al., 2015</xref>). For further optimization, Yu et&#x20;al. balanced HCO<sub>3</sub>
<sup>-</sup> transport and fixation to maximize succinic acid titer. They demonstrated that the highest succinic acid production was obtained when the <italic>sbtA</italic>, <italic>bicA</italic>, and <italic>ppc</italic> genes were co-expressed under the control of the weak P4 promoter and the <italic>pck</italic> gene under the control of the strong P19 promoter. This led to a 1.4-fold increase in succinic acid production from 65 to 89.4&#xa0;g/L, and a 1.3-fold increase in succinic acid yield from 0.98 to 1.27&#xa0;mol/mol glucose (<xref ref-type="bibr" rid="B136">Yu et&#x20;al., 2016</xref>). All of these results indicated the necessity of CO<sub>2</sub> supplementation in succinic acid biosynthesis.</p>
</sec>
</sec>
</sec>
<sec id="s4">
<title>4 Conclusion and Perspectives</title>
<p>Succinic acid is an important four-carbon building-block chemical that can be used as the precursor of numerous products, including biodegradable plastics, feed additives, green solvents, and pharmaceutical products. As an alternative to environmentally unfriendly traditional method, biosynthesis is a promising means for succinic acid production and has become increasingly mature as well. This review summarized different succinic acid biosynthesis pathways, key enzymes, and the metabolic engineering approaches, particularly those developed for adjusting the carbon flux, balancing the redox ratio, and CO<sub>2</sub> supplementation for succinic acid production. It needs to be clear that one or more strategies have been applied jointly to obtain high performance strains in practical application. To date, some efficient succinic acid producers have been obtained and applied in industry, but several problems still exist, such as the low robustness of engineered bacteria or the high cost of downstream product recovery. Thus, increasing attention should be paid to the following prospects in future research.</p>
<p>Firstly, an economical fermentation process should be further explored. Most succinic acid producing strains prefer neutral pH conditions, but succinic acid formation acidifies the medium. To keep a neutral pH, a common method is the conversion of succinic acid into succinate by titration with bases during fermentation. However, generation of salts increases the difficulty and cost of post-processing for succinic acid production. Compared with feedstock costs and some other upstream costs, the downstream costs are also considerable, and represent about 30&#x2013;40% of the total production costs (<xref ref-type="bibr" rid="B153">L&#xf3;pez-Garz&#xf3;n and Straathof, 2014</xref>). One solution is to develop low pH (below or close to the p<italic>K</italic>
<sub>a</sub>) fermentation strategies, which can minimize the consumption of bases, reduce the generation of salts and avoid re-conversion of succinate into succinic acid. However, the highest succinic acid concentration has so far been achieved at neutral pH, not at low pH. The main reason is the low tolerance to low pH of most succinic acid producers, such as <italic>C. glutamicum</italic>, <italic>E.&#x20;coli</italic>, <italic>M. succiniciproducens</italic>, <italic>B. succiniciproducens</italic> and <italic>A. succinogenes</italic> (<xref ref-type="bibr" rid="B3">Ahn et&#x20;al., 2016</xref>). Therefore, to reduce the overall production costs, development of a competitive acid-tolerant strain is critical for enabling bio-based production of succinic acid. Meanwhile, more attention should be paid to revealing acid-tolerant mechanisms, which are meaningful for the production of any carboxylic&#x20;acid.</p>
<p>Furthermore, efficient biosynthesis process should be further explored. Making a detailed analyze and comparison of the seven succinic acid biosynthetic pathways is very important for understanding and designing greater efficiency biosynthesis pathway. And no matter which pathway is selected, the metabolic process for its production is a multigene pathway. Key enzyme overexpression is the traditional genetic engineering strategy used to overcome this, but the enzyme expression level in a multistep pathway is not simply &#x201c;the more the better&#x201d;. Liu et&#x20;al. demonstrated the importance of metabolic balancing in a multistep biosynthetic pathway (<xref ref-type="bibr" rid="B78">Liu et&#x20;al., 2016</xref>). Meanwhile, plasmid-based multigene over-expression systems can also lead to genetic instability and high cellular burdens. Thus, a functional balance between enzymes and the improvement of host stability in succinic acid biosynthetic processes should be considered. Some strategies are valuable, such as chromosomal integration, promoters or RBS engineering, microbial host engineering, and dynamic control of the pathway of interest.</p>
</sec>
</body>
<back>
<sec id="s5">
<title>Author Contributions</title>
<p>XF and XL developed the idea for the review. XL and XF wrote the manuscript. XF, GZ, SS, CF, and PX revised this manuscript. All authors read and approved the final manuscript.</p>
</sec>
<sec id="s6">
<title>Funding</title>
<p>This study was financially supported by the Natural Science Foundation of Shandong Province (ZR2021QB176 and ZR2019QB015), National Natural Science Foundation of China (31800081), State Key Laboratory of Microbial Technology Open Projects Fund (Project No. M2021-15), and start-up fund from Shandong University of Technology (to&#x20;XL).</p>
</sec>
<sec sec-type="COI-statement" id="s7">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s8">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors, and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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