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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Bioeng. Biotechnol.</journal-id>
<journal-title>Frontiers in Bioengineering and Biotechnology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Bioeng. Biotechnol.</abbrev-journal-title>
<issn pub-type="epub">2296-4185</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">777320</article-id>
<article-id pub-id-type="doi">10.3389/fbioe.2021.777320</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Bioengineering and Biotechnology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Proteomic Analysis of Silk Fibroin Reveals Diverse Biological Function of Different Degumming Processing From Different Origin</article-title>
<alt-title alt-title-type="left-running-head">Wang et al.</alt-title>
<alt-title alt-title-type="right-running-head">Proteomic Analysis of Silk Fibroin</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Yaling</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1471253/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liang</surname>
<given-names>Yunyun</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Huang</surname>
<given-names>Jiacen</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Gao</surname>
<given-names>Yisheng</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Xu</surname>
<given-names>Zhixin</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ni</surname>
<given-names>Xuejun</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Yang</surname>
<given-names>Yumin</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Yang</surname>
<given-names>Xiaoming</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/740736/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Zhao</surname>
<given-names>Yahong</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<label>
<sup>1</sup>
</label>
<institution>Key Laboratory of Neuroregeneration of Jiangsu and Ministry of Education</institution>, <institution>Co-innovation Center of Neuroregeneration</institution>, <institution>NMPA Key Laboratory for Research and Evaluation of Tissue Engineering Technology Products</institution>, <institution>Nantong University</institution>, <addr-line>Nantong</addr-line>, <country>China</country>
</aff>
<aff id="aff2">
<label>
<sup>2</sup>
</label>
<institution>School of Pharmacy</institution>, <institution>Nantong University</institution>, <addr-line>Nantong</addr-line>, <country>China</country>
</aff>
<aff id="aff3">
<label>
<sup>3</sup>
</label>
<institution>School of Public Health</institution>, <institution>Nantong University</institution>, <addr-line>Nantong</addr-line>, <country>China</country>
</aff>
<aff id="aff4">
<label>
<sup>4</sup>
</label>
<institution>Affiliated Hospital of Nantong University</institution>, <institution>Nantong University</institution>, <addr-line>Nantong</addr-line>, <country>China</country>
</aff>
<author-notes>
<corresp id="c001">&#x2a;Correspondence: Yumin Yang, <email>yangym@ntu.edu.cn</email>; Xiaoming Yang, <email>sammy@ntu.edu.cn</email>; Yahong Zhao, <email>Zhaoyh108@ntu.edu.cn</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Biomaterials, a section of the journal Frontiers in Bioengineering and Biotechnology</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/153227/overview">Diego Mantovani</ext-link>, Laval University, Canada</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/955255/overview">Kunyu Zhang</ext-link>, Johns Hopkins University, United States</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1545905/overview">Renchuan You</ext-link>, Wuhan Textile University, China</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/1130252/overview">Mingzhong Li</ext-link>, Soochow University, China</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>07</day>
<month>02</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>9</volume>
<elocation-id>777320</elocation-id>
<history>
<date date-type="received">
<day>15</day>
<month>09</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>29</day>
<month>12</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 Wang, Liang, Huang, Gao, Xu, Ni, Yang, Yang and Zhao.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>Wang, Liang, Huang, Gao, Xu, Ni, Yang, Yang and Zhao</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Silk, as a kind of natural fibrin, has been prepared into various biomaterials due to its excellent biocompatibility and mechanicalness. However, there are some controversies on the biocompatibility of silk fibroin (SF), especially when it coexists with sericin. In this study, two kinds of silk from Jiangsu and Zhejiang were degummed with two concentrations of Na<sub>2</sub>CO<sub>3</sub> solution, respectively, to obtain four kinds of silk fibroin. The effects of different degumming treatments on silk fibroin properties were analyzed by means of color reaction, apparent viscosity measurement, and transmission electron microscope and isobaric tags for relative and absolute quantification analyses, and the effects of different silk fibroin membranes on the growth of Schwann cells were evaluated. The results showed that the natural silk from Zhejiang treated with 0.05% Na<sub>2</sub>CO<sub>3</sub> solution had a fuller structure, higher apparent viscosity, and better protein composition. While SF obtained by degumming with 0.5% Na<sub>2</sub>CO<sub>3</sub> solution was more beneficial to cell adhesion and proliferation due to the thorough removal of sericin. This study may provide important theoretical and experimental bases for the selection of biomaterials for fabricating artificial nerve grafts.</p>
</abstract>
<kwd-group>
<kwd>silk</kwd>
<kwd>silk fibroin</kwd>
<kwd>silk sericin</kwd>
<kwd>degum</kwd>
<kwd>proteomic</kwd>
</kwd-group>
<contract-num rid="cn001">2018YFC1105600</contract-num>
<contract-num rid="cn002">31830028</contract-num>
<contract-sponsor id="cn001">National Key Research and Development Program of China<named-content content-type="fundref-id">10.13039/501100012166</named-content>
</contract-sponsor>
<contract-sponsor id="cn002">Key Program of NSFC-Tongyong Union Foundation<named-content content-type="fundref-id">10.13039/100017338</named-content>
</contract-sponsor>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Peripheral nerve repair has been one of the difficult problems in the field of neuroscience, especially the repair of long-distance serious injury. With the development of tissue engineering, artificial nerve grafts are becoming more and more popular. It is expected to replace autologous nerve transplantation (the &#x201c;gold standard&#x201d; at present) to repair long-distance injury because it can make up for the shortage of autologous nerve transplantation, such as limited source, tissue size and structure mismatch, long-term denervation, and secondary injury of the donor site (<xref ref-type="bibr" rid="B17">Martins et al., 2013</xref>; <xref ref-type="bibr" rid="B20">Ring, 2013</xref>; <xref ref-type="bibr" rid="B3">Castillo-Galvan et al., 2014</xref>).</p>
<p>In the past few decades, a large number of natural or synthetic materials, such as chitosan (<xref ref-type="bibr" rid="B26">Wang et al., 2005</xref>; <xref ref-type="bibr" rid="B7">Demina et al., 2017</xref>; <xref ref-type="bibr" rid="B33">Yu et al., 2017</xref>), silk fibroin (<xref ref-type="bibr" rid="B1">Baecker et al., 2017</xref>; <xref ref-type="bibr" rid="B16">Luo and Shao, 2017</xref>), collagen (<xref ref-type="bibr" rid="B21">Sayanagi et al., 2020</xref>), and poly (lactic-co-glycolic acid) (<xref ref-type="bibr" rid="B28">Wang et al., 2014</xref>), have been used to prepare artificial nerve grafts.</p>
<p>Among numerous biomaterials, silk, one of the earliest animal proteins, was first used in the textile industry and as surgical suture. Silk is a kind of natural high-molecular-protein polymer, which is synthesized in the special glands of the epithelial cells of silkworms, secreted into the cavity, and finally spun into fibers. It mainly contains silk fibroin (SF) and sericin. SF is in the middle of the silk, surrounded by sericin (<xref ref-type="bibr" rid="B18">Minoura et al., 1995</xref>). The content of SF accounts for most of the silk, about 70&#x2013;80%, and sericin accounts for about 20&#x2013;30%.</p>
<p>
<italic>In vivo</italic> and <italic>in vitro</italic> studies have shown that SF without sericin will not cause obvious inflammation (<xref ref-type="bibr" rid="B27">Wang et al., 2008</xref>; <xref ref-type="bibr" rid="B31">Yang et al., 2007a</xref>). Therefore, SF-based biomaterials have been widely used in bone, tendon, and nerve repair and other tissue engineering fields due to their favorable biocompatibility, robust mechanical properties, physicochemical properties, and biological activities (<xref ref-type="bibr" rid="B9">Gotoh et al., 2004</xref>; <xref ref-type="bibr" rid="B5">Dal Pra et al., 2005</xref>; <xref ref-type="bibr" rid="B2">Bhardwaj and Kundu, 2012</xref>; <xref ref-type="bibr" rid="B11">Guptaa et al., 2013</xref>). In terms of sericin, it was not well investigated during the past decades and was simply discarded as waste in traditional silk reeling industry (<xref ref-type="bibr" rid="B15">Lamboni et al., 2015</xref>). Fortunately, in recent years, people have gradually realized that sericin is a kind of polymer material with specific biological properties (<xref ref-type="bibr" rid="B34">Yun et al., 2016</xref>). It facilitates cell adhesion and can inhibit cell apoptosis, can promote cell differentiation (<xref ref-type="bibr" rid="B23">Song et al., 2016</xref>), and has been used in the fabrication of a variety of biomaterials, such as thin films (<xref ref-type="bibr" rid="B36">Zhang et al., 2015</xref>), hydrogels (<xref ref-type="bibr" rid="B22">Siritientong et al., 2011</xref>; <xref ref-type="bibr" rid="B24">Tao et al., 2019</xref>), and scaffolds (<xref ref-type="bibr" rid="B6">Dash et al., 2009</xref>).</p>
<p>Early studies have reported the biocompatibility of silk. It is generally believed that sericin has certain immunogenicity (<xref ref-type="bibr" rid="B8">Dewair et al., 1985</xref>; <xref ref-type="bibr" rid="B29">Wen et al., 1990</xref>), which is not conducive to its application as a biomaterial <italic>in vivo</italic>. In recent years, with the progress of science and technology and further research on sericin, researchers believe that sericin itself will not cause a strong immune rejection (<xref ref-type="bibr" rid="B12">Jiao et al., 2017</xref>). When sericin was co-cultured with mouse macrophages (RAW264.7), the mRNA expression levels of IL-1 &#x3b2; and TNF-&#x3b1; were lower than those in negative control group, which proved that sericin did not cause an immune response (<xref ref-type="bibr" rid="B19">Panilaitis et al., 2003</xref>). Some people think that only the co-existence of sericin and silk fibroin can produce immunogenicity, but the two alone will not (<xref ref-type="bibr" rid="B32">Yang et al., 2007b</xref>; <xref ref-type="bibr" rid="B25">Teuschl et al., 2014</xref>). Therefore, different silk and degumming degrees will have different effects on the properties and biocompatibility of silk fibroin.</p>
<p>In this paper, silk from Jiangsu and Zhejiang were degummed with 0.05% Na<sub>2</sub>CO<sub>3</sub> and 0.5% Na<sub>2</sub>CO<sub>3</sub>, respectively, to obtain four kinds of SF, and the antherea silk was taken as the control group. The composition and structure differences of each sample and its influence on cell growth were analyzed. The study is anticipated to provide important theoretical and experimental bases for the selection of biomaterials for artificial nerve graft preparation.</p>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>Materials and Methods</title>
<sec id="s2-1">
<title>Materials</title>
<p>
<italic>Bombyx mori</italic> silk was purchased from Jiangsu and Zhejiang (China). Dulbecco&#x2019;s modified Eagle&#x2019;s medium and fetal bovine serum were obtained from Gibco (United States). Forskolin, heregulin, cytosine arabinoside, and 488-labeled goat anti-mouse IgG were obtained from Sigma-Aldrich (United States). Rabbit anti-S100 beta monoclonal antibody was obtained from Abcam. CCK-8 kit was purchased from Ribobio (Guangzhou, China).</p>
</sec>
<sec id="s2-2">
<title>Degumming of Silkworm Raw Silk</title>
<p>Fresh silkworm raw silk from different sources (Jiangsu and Zhejiang) was weighed and put into a sodium carbonate solution with different concentrations (0.05 and 0.5&#xa0;wt%) in proportion. The silk was boiled three times in Na<sub>2</sub>CO<sub>3</sub> solution (half an hour each time). The degummed silk was thoroughly rinsed with Millipore water and air-dried on a super clean platform to obtain refined silk, that is, silk fibroin sample for standby. There are 4 samples in total: the raw silk from Jiangsu degummed with 0.05 and 0.5% Na<sub>2</sub>CO<sub>3</sub> are sample 1 and sample 2, respectively, while the raw silk from Zhejiang degummed with 0.05 and 0.5% Na<sub>2</sub>CO<sub>3</sub> are sample 3 and sample 4, respectively. The tussah silk degummed with 0.5% Na<sub>2</sub>CO<sub>3</sub> is labeled as sample 5.</p>
</sec>
<sec id="s2-3">
<title>Dissolution of Silk Fibroin</title>
<p>The refined silk of silkworm was dissolved in a ternary solvent system of CaCl<sub>2</sub>/H<sub>2</sub>O/C<sub>2</sub>H<sub>5</sub>OH (mole ratio, 1:8:2) at 75 &#xb1; 2&#xb0;C and then dialyzed against Millipore water in a cellulose tube (molecular cutoff &#x3d; 12,000&#x2013;14,000) at room temperature for 3&#xa0;days.</p>
</sec>
<sec id="s2-4">
<title>Degumming Degree Test</title>
<p>Picric acid&#x2013;carmine staining was used to evaluate the degumming degree of silk degummed with two kinds of Na<sub>2</sub>CO<sub>3</sub> solution (<xref ref-type="bibr" rid="B35">Zhang et al., 2014</xref>). First, in preparing the staining solution, carmine was dissolved in 25% ammonia, followed by adding saturated picric acid aqueous solution and adjusting the pH to 8.0&#x2013;9.0. Then, the refined bombyx silk samples were immersed in the staining solution in test tubes, and the tubes were heated in boiling water bath for 5&#xa0;min. Lastly, the samples were thoroughly rinsed with ddH<sub>2</sub>O and air-dried. Raw silk was taken as the control.</p>
</sec>
<sec id="s2-5">
<title>Determination of Apparent Viscosity</title>
<p>The refined samples were dissolved in a tertiary solvent system of CaCl<sub>2</sub>/H<sub>2</sub>O/C<sub>2</sub>H<sub>5</sub>OH (mole ratio, 1:8:2) and then kept in water bath at 20&#xb0;C for 2&#xa0;h. Apparent viscosity was then measured with NDJ-7 rotary viscometer.</p>
</sec>
<sec id="s2-6">
<title>Transmission Electron Microscopy Observation</title>
<p>Samples under different degumming treatments were fixed in pre-cooled 2.5% glutaraldehyde, post-fixed in 1% osmium acid, dehydrated with gradient ethanol, embedded in EPON 812 epoxy resin, and cut into slices of 70-nm thickness. The ultra-thin sections were stained with lead citrate and uranium acetate, followed by observation under a transmission electron microscope (JEOL Ltd., Tokyo, Japan). In Photoshop 7.0, the fiber diameter was measured by measuring tools. The diameter of at least 60 fibers was measured from 10 photos taken in different fields randomly. The average value and standard deviation of the fiber diameter were calculated.</p>
</sec>
<sec id="s2-7">
<title>Isolation of Schwann Cells</title>
<p>In this study, all experimental procedures involving animals were conducted as per the institutional animal care guidelines and approved ethically by the administration committee of experimental animals, Jiangsu Province, China.</p>
<p>Schwann cells (SCs) were harvested as described previously (<xref ref-type="bibr" rid="B4">Chen et al., 2017</xref>). Briefly, the sciatic nerves and dorsal root ganglia were isolated from neonatal Sprague&#x2013;Dawley rats (1 to 2&#xa0;days) to get primary rat Schwann cells. The obtained tissues were triturated and enzymatically digested with 0.25% trypsin at 37&#xb0;C for 30&#xa0;min. Then, the mixture was centrifuged and re-suspended in Dulbecco&#x2019;s modified Eagle&#x2019;s medium (DMEM) supplemented with 10% fetal bovine serum (FBS), followed by plating on poly-<sc>l</sc>-lysine pre-coated dishes. After incubation for 24&#xa0;h, cytosine arabinoside was added to allow cell incubation for another 24&#xa0;h to remove fibroblasts. Next, the cells were cultured in DMEM supplemented with 10% FBS, 2&#xa0;mM forskolin, and 2&#xa0;ng/ml heregulin to stimulate cell proliferation. When cells covered 90% of the dish surface, they were further purified with anti-Thy1 antibody (1:1,000, AbD Serotec, Raleigh, NC, United States) and complement (Jackson Immuno, West Grove, PA). Lastly, the purified SCs were cultured in DMEM with FBS and growth factor until the cells were sufficient to seed on the SF membrane.</p>
</sec>
<sec id="s2-8">
<title>Schwann Cells Culture</title>
<p>The prepared SF membranes were sterilized with 75% alcohol for 30&#xa0;min and rinsed extensively with sterilized phosphate-buffered saline (PBS). Then, all samples were put in 24-well culture plates, and cell suspension was added in. The seeding cell density was 1 &#xd7; 10<sup>5</sup> cells/well. At different times of culture, the morphological changes of Schwann cells on these different SF membranes were observed under an inverted light microscope.</p>
</sec>
<sec id="s2-9">
<title>CCK-8 Assay</title>
<p>CCK-8 kit was used to evaluate the viability and proliferation of SCs on different samples after culturing for 1 and 3&#xa0;days, respectively. At different times, fresh DMEM medium with CCK-8 reagent (<italic>V</italic>
<sub>medium</sub> / <italic>V</italic>
<sub>CCK-8</sub> &#x3d; 10:1) was added to replace the cell medium to allow cell incubation at 37&#xb0;C for 4&#xa0;h. Then, 150&#xa0;&#x3bc;l of suspension was transferred to a 96-well plate. The absorbance was measured at 450&#xa0;nm by an ElX-800 micro-ELISA reader (Bio-Tek Inc., United States).</p>
</sec>
<sec id="s2-10">
<title>Immunostaining of Schwann Cells</title>
<p>The morphology of Schwann cells on different samples was examined by the immunostaining method. In brief, after 2&#xa0;days of culture, cells were rinsed with PBS for three times thoroughly; then, they were fixed in 4% paraformaldehyde at 4&#xb0;C for 4&#xa0;h and stained with S100 (1:400) at 4&#xb0;C for 24&#xa0;h, followed by further reaction with IgG-488 (1:400) at 37&#xb0;C for 2&#xa0;h. Subsequently, the cells were incubated with Hoechst (final concentration: 5&#xa0;&#x3bc;g/ml) at room temperature for 15&#xa0;min. Finally, cell samples were observed under an immuno-fluorescence microscope (Leica, Germany).</p>
</sec>
<sec id="s2-11">
<title>Calcein AM/PI Test</title>
<p>The viability of Schwann cells was evaluated with Calcein-AM/PI Double Staining Kit (Invitrogen, L3224). Schwann cells were seeded on four different silk fibroin membranes and control plates at a density of 1 &#xd7; 10<sup>5</sup> cells/well. After the SCs were cultured for 1&#xa0;and 3&#xa0;days, DMEM with 10% FBS was discarded, and the samples were rinsed with PBS. Then, calcein-AM and propidium iodide (PI) were added, and the cells were incubated at 37&#xb0;C for 30&#xa0;min. Images were captured by an immuno-fluorescence microscope.</p>
</sec>
<sec id="s2-12">
<title>Proteomic Quantitative Analysis of Different Silk Fibroin Samples</title>
<p>To find out the different proteins between samples and select the appropriate silk materials, we used isobaric tags for relative and absolute quantification (iTRAQ) to analyze proteins in different samples quantitatively (<xref ref-type="bibr" rid="B37">Zou et al., 2019</xref>). The phenol extraction method was used for protein extraction, which can effectively remove the small molecular interference in the sample. At the same time, filter-aided proteome preparation enzymolysis strategy was used for protein digestion. Then, the peptides of each sample were labeled with iTRAQ, and the labeled samples were graded by high-pH reversed-phase classification strategy. Finally, data collection of samples obtained by classification was carried out by the ultra-high-resolution mass spectrometer Q-Exactive.</p>
</sec>
<sec id="s2-13">
<title>Statistical Analysis</title>
<p>The statistical significance was analyzed by GraphPad Prism 7.0 (GraphPad Software, Inc.). One-way ANOVA followed by Tukey&#x2019;s <italic>post-hoc</italic> test was used to compare individuals among different groups of the same time. Two-way analysis of variance (two-way ANOVA), followed by Sidak&#x2019;s multiple-comparisons test, was employed when comparing &#x2212;ES and &#x2b;ES groups of all groups. Data were presented as mean &#xb1; SD. <italic>p</italic> &#x3c; 0.05 was considered statistically significant.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec id="s3-1">
<title>Effect of Degumming Method on Degumming Degree</title>
<p>Two kinds of Na<sub>2</sub>CO<sub>3</sub> solution (0.05 and 0.5&#xa0;wt%) were chosen to degum silk from different sources. All silk from different sources in the two solutions were boiled for 0.5&#xa0;h, and the test was repeated three times. The degumming degree of two kinds of Na<sub>2</sub>CO<sub>3</sub> solutions on the raw silk from different sources was determined by the picric acid&#x2013;carmine staining method. SF and sericin have different absorbance capacity on picric acid and carmine. Silk fibroin turns yellow in alkaline solution due to its selective adsorption of picric acid. However, sericin has a strong capacity to absorb both picric acid and carmine; red covers yellow, so it appears red. Therefore, after dyeing and washing, the yellow surface of raw silk indicates that sericin has been completely removed; otherwise, it indicates that sericin has not been completely removed. It can be seen from <xref ref-type="fig" rid="F1">Figure 1</xref> that, after degumming with the Na<sub>2</sub>CO<sub>3</sub> solution, samples 1&#x2013;4 are yellow (<xref ref-type="fig" rid="F1">Figures 1A,B,D,E</xref>), indicating that sericin has been removed, while the control group without degumming can be clearly observed to be red (<xref ref-type="fig" rid="F1">Figures 1C,F</xref>). With the increase of Na<sub>2</sub>CO<sub>3</sub> solution concentration, the samples appear pure yellow (<xref ref-type="fig" rid="F1">Figures 1B,E</xref>), showing that the degumming degree is higher.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Optical images of dyed silkworm silk from different sources, degummed by Na<sub>2</sub>CO<sub>3</sub> with different concentration <bold>(A&#x2013;F)</bold> and epivisal viscosity <bold>(G)</bold>, &#x2a;<italic>p</italic> &#x3c; 0.05. Silk from Jiangsu degummed by 0.05% Na<sub>2</sub>CO<sub>3</sub> <bold>(A)</bold> and 0.5% Na<sub>2</sub>CO<sub>3</sub> <bold>(B)</bold>; no degumming treatment <bold>(C)</bold>. Silk from Zhejiang degummed by 0.05% Na<sub>2</sub>CO<sub>3</sub> <bold>(D)</bold> and 0.5% Na<sub>2</sub>CO<sub>3</sub> <bold>(E)</bold>; no degumming treatment <bold>(F)</bold>.</p>
</caption>
<graphic xlink:href="fbioe-09-777320-g001.tif"/>
</fig>
</sec>
<sec id="s3-2">
<title>Effect of Silkworm Raw Materials on Apparent Viscosity</title>
<p>The SF obtained by different degumming methods was dissolved in ternary solution in the same proportion, and its apparent viscosity was measured (<xref ref-type="fig" rid="F1">Figure 1G</xref>). The viscosity of Zhejiang silk decreased from 630 to 78 CP, while that of Jiangsu silk changed from 450 to 75 CP as the concentration of Na<sub>2</sub>CO<sub>3</sub> changed from 0.05 to 0.5%, indicating that the high concentration of Na<sub>2</sub>CO<sub>3</sub> can catalyze the degradation or hydrolysis of SF. Under the catalysis of the high concentration of Na<sub>2</sub>CO<sub>3</sub>, the molecular chain of SF becomes shorter, the number of entangled nodes in the solution decreases, and the friction resistance between molecules decreases, which leads to the decrease of viscosity. Therefore, according to the viscosity change, the concentration of Na<sub>2</sub>CO<sub>3</sub> should be reduced as much as possible to reduce the damage to the viscosity of SF. At the same time, we also found that the viscosity of the SF solution of Zhejiang silkworm was higher than that of Jiangsu silkworm under two kinds of Na<sub>2</sub>CO<sub>3</sub> concentration.</p>
</sec>
<sec id="s3-3">
<title>The Effect of Degumming Method on the Structure of Silk Fibroin</title>
<p>Silk from different sources was degummed with different concentrations of Na<sub>2</sub>CO<sub>3</sub> solution. After degumming with 0.05% Na<sub>2</sub>CO<sub>3</sub>, the cross-section of the SF sample demonstrates a homogeneous oval with complete structure, smooth edge, and no attachment on the surface, indicating that 0.05% Na<sub>2</sub>CO<sub>3</sub> can not only remove sericin on the surface but also maintain the structure of SF. While treated with 0.5% Na<sub>2</sub>CO<sub>3</sub>, the section of degummed SF presents oval of different sizes and a long fusiform shape. It appears wrinkled with incomplete edge, and the diameter gets smaller, demonstrating that the high concentration of Na<sub>2</sub>CO<sub>3</sub> makes sericin completely removed, but it also destroys the structure of SF to some extent. Comparing the effect of source on the structure of SF, despite the concentration of the Na<sub>2</sub>CO<sub>3</sub> solution, the cross-section diameter of SF obtained from Zhejiang silkworms was larger than that from Jiangsu silkworms, indicating that the structure of Zhejiang silkworms was relatively full (<xref ref-type="fig" rid="F2">Figure 2</xref>).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Transmission electron microscopy of silkworm silk from different sources, degummed by Na<sub>2</sub>CO<sub>3</sub> with different concentration. Silk from Jiangsu degummed by 0.05% Na<sub>2</sub>CO<sub>3</sub> <bold>(A)</bold> and 0.5% Na<sub>2</sub>CO<sub>3</sub> <bold>(B)</bold>; no degumming treatment <bold>(C)</bold>. Silk from Zhejiang degummed by 0.05% Na<sub>2</sub>CO<sub>3</sub> <bold>(D)</bold> and 0.5% Na<sub>2</sub>CO<sub>3</sub> <bold>(E)</bold>; no degumming treatment <bold>(F)</bold>. The parts circled in yellow in samples <bold>(C)</bold> and <bold>(F)</bold> are marked as the sericin layer. <bold>(G)</bold> Statistical graph of the fiber diameter of <bold>(A&#x2013;F)</bold>. <bold>(A&#x2013;F)</bold>: bar &#x3d; 5&#xa0;&#x3bc;m.</p>
</caption>
<graphic xlink:href="fbioe-09-777320-g002.tif"/>
</fig>
</sec>
<sec id="s3-4">
<title>Morphology of Schwann Cells</title>
<p>Schwann cells play an important role in the formation of myelin sheath during peripheral nerve regeneration. Therefore, in this study, the adhesion, survival, and growth of Schwann cells on different silk fibroin membranes were studied to choose a suitable SF to prepare peripheral nerve grafts which can better promote peripheral nerve regeneration.</p>
<p>
<xref ref-type="fig" rid="F3">Figure 3</xref> shows the morphology observation of SCs on different samples for 24 and 48&#xa0;h, respectively. After 1&#xa0;day of culture, there were certain amounts of cell on all samples, but the number of cells on JS-0.5 and ZJ-0.5 was more than that on JS-0.05 and ZJ-0.05, and some cells on JS-0.05 and ZJ-0.05 shrank into a circle, indicating that cells could grow on all samples, but samples JS-0.5 and ZJ-0.5 were more conducive to cell adhesion. It may be that a small amount of residual sericin in JS-0.05 and ZJ-0.05 affected the interaction between cells and samples, resulting in inferior number and the morphology of cells on JS-0.05 and ZJ-0.05. Two days later, the cell density on sample JS-0.5 and ZJ-0.5 increased, indicating good cell growth and proliferation, and the number of cells on samples JS-0.05 and ZJ-0.05 increased, too, but not as much as that of JS-0.5 and ZJ-0.5, indicating that JS-0.05 and ZJ-0.05 can also support cell growth and promote cell proliferation, but the cell growth was slower than that of JS-0.5 and ZJ-0.5. The results of immunofluorescence staining tells us that, on samples JS-0.5 and ZJ-0.5, SC cells exhibited better adhesion and spreading and displayed a spindle-like shape with filopodia at both ends, while on sample JS-0.05 and ZJ-0.05 the cell bodies were spindle or round, which is consistent with the brightfield images. Moreover, the morphology and quantity of the cells on ZJ-SF were better than those on JS-SF.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Morphology observation of Schwann cells on different samples for 24 and 48&#xa0;h. Brightfield images (two columns to the left) and immunofluorescence staining (column to the right, 48&#xa0;h). <bold>(A)</bold> control, <bold>(B)</bold> JS-0.05, <bold>(C)</bold> JS-0.5, <bold>(D)</bold> ZJ-0.05, <bold>(E)</bold> ZJ-0.5. Scale bar, 50&#xa0;&#x3bc;m.</p>
</caption>
<graphic xlink:href="fbioe-09-777320-g003.tif"/>
</fig>
</sec>
<sec id="s3-5">
<title>Survival and Proliferation of Schwann Cells on Different Silk Fibroin Membranes</title>
<p>The viability and proliferation of Schwann cells on all samples were evaluated by calcein-AM/PI double staining and CCK-8 test, respectively. The results are shown in <xref ref-type="fig" rid="F4">Figure 4</xref>. It was found that Schwann cells can grow on all samples, and almost all cells are green (<xref ref-type="fig" rid="F4">Figure 4A</xref>), indicating that all samples can support cell survival and growth. Both staining test and CCK-8 test (<xref ref-type="fig" rid="F4">Figure 4B</xref>) showed that the number of cells increased over time, which further proved that all the samples exhibited no cytotoxicity and supported cell proliferation. However, the number of cells on the sample made of silk fibroin degummed with 0.05% Na<sub>2</sub>CO<sub>3</sub> was relatively larger, as the thoroughly degummed silk fibroin membrane was more conducive to cell adhesion. In addition, under the same degumming conditions, compared with JS-SF, the number of cells on the ZJ-SF samples is relatively more in 1 or 3&#xa0;days, and the morphology of the cells was better.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Viability of Schwann cells on different samples for 24 h and 48 h. Images of calcein-AM/propidium iodide (PI) double-staining: <bold>(A)</bold> control, <bold>(B)</bold> JS-0.05, <bold>(C)</bold> JS-0.5, <bold>(D)</bold> ZJ-0.05, and <bold>(E)</bold> ZJ-0.5. Scale bar, 50 mm. Green fluorescence indicates live cells stained with calcein-AM and red fluorescence indicates dead cells stained with PI. Scale bar, 200 &#x03BC;m. <bold>(F)</bold> CCK-8 test of Schwann cells.</p>
</caption>
<graphic xlink:href="fbioe-09-777320-g004.tif"/>
</fig>
</sec>
<sec id="s3-6">
<title>Proteome-Wide Identification and Classification of Different Samples</title>
<p>In order to find out the reasons for the differences of cell adhesion and growth on different products, we analyzed the protein of samples and found that there were 55 kinds of proteins which were classified according to their function. <xref ref-type="fig" rid="F5">Figure 5</xref> shows the correlation analysis of each sample. It can be seen that the correlation between sample JS-0.05 and sample ZJ-0.05 is very high, as well as that between sample JS-0.5 and ZJ-0.5, indicating that the silk fibroin composition of different sources treated with the same degumming method is similar. The sample <italic>Antheraea pernyi</italic> silk is different from the other samples and is closest to sample ZJ-0.5, which tells us that the protein composition of Zhejiang silk treated with 0.5% is the most similar to that of <italic>A. pernyi</italic> silk.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Correlation heat map of different samples. S1: JS-0.05, S2: JS-0.5, S3: ZJ-0.05, S4: ZJ-0.5, S5: <italic>Antheraea pernyi</italic> silk.</p>
</caption>
<graphic xlink:href="fbioe-09-777320-g005.tif"/>
</fig>
<p>Both <italic>A. pernyi</italic> silk fibroin and mulberry silk fibroin are fibrous proteins, and the category of amino acids is almost identical. However, there are obvious differences in quantity (<xref ref-type="bibr" rid="B13">Kim et al., 2012</xref>). The amino acid residues in the silk fibroin of <italic>A. pernyi</italic> are large, and the side chain contains rich active groups, including aspartic acid (ASP) and arginine (Arg), which can form a special RGD tripeptide sequence with glycine. Thus, <italic>A. pernyi</italic> silk is favorable to cell adhesion (<xref ref-type="bibr" rid="B14">Kopp et al., 2020</xref>), and its elongation and elasticity are higher than that of silkworm silk. Therefore, in our quantitative analysis, tussah silk was selected as the control. Through iTRAQ analysis, the silk with similar properties as tussah silk was determined so as to find the suitable silk source and degumming treatment method. According to the above-mentioned results, sample ZJ-0.5 is similar to sample <italic>A. pernyi</italic> silk, that is, the silk sample from Zhejiang Province being degummed in 0.5% Na<sub>2</sub>CO<sub>3</sub>. Previous cell experiments show that sample ZJ-0.5 is the best for cell adhesion, viability, or proliferation, which is well explained by the sample protein clustering here.</p>
<p>The 55 proteins identified in the samples could be classified into several categories based on their annotated molecular function: extracellular (16), binding (13), antimicrobial (1), fibroin (8), cell adhesion (2), integral of membrane (11), sericin (1), cyclosketen (2), and so on (<xref ref-type="fig" rid="F6">Figure 6</xref>). It can be found that, except silk fibroin and sericin, other proteins are closely related to cell growth, which is one of the reasons that silk fibroin has good biological activity and is widely used in the biomedical field.</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>Classification of proteins in silk fibroin.</p>
</caption>
<graphic xlink:href="fbioe-09-777320-g006.tif"/>
</fig>
</sec>
<sec id="s3-7">
<title>Comparison of the Relative Abundance of Proteins in the Samples</title>
<p>To compare protein abundances across different samples, we used scale function to realize data standardization. <xref ref-type="fig" rid="F7">Figure 7</xref> shows that the content of silk fibroin in samples JS-0.5 and ZJ-0.5 is higher, while the sericin content is lower, which is consistent with the degumming treatment method. Samples JS-0.5 and ZJ-0.5 were treated with 0.5% Na<sub>2</sub>CO<sub>3</sub>, and sericin is removed more thoroughly. Cell adhesion and DNA polymerase are also higher in samples JS-0.5 and ZJ-0.5, and there is more toxin-activity protein in samples 1 and 3, explaining why the cells on samples JS-0.5 and ZJ-0.5 survived more and grew better. However, the contents of cytoskeleton, binding, and extracellular proteins in samples JS-0.05 and ZJ-0.05 are higher than those in samples JS-0.5 and ZJ-0.5, indicating that a high concentration of Na<sub>2</sub>CO<sub>3</sub> can effectively remove sericin but also make silk fibroin lose some useful proteins. Therefore, the content of each protein in every sample is different. They play various roles in the process of cell adhesion and proliferation. We need to consider their effects on cell growth comprehensively, retaining as much natural matrix components as possible on the premise of thoroughly removing sericin.</p>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption>
<p>Ratio of representative proteins in different samples. R1: JS-0.05, R2: JS-0.5, R3: ZJ-0.05, R4: ZJ-0.5, R5: <italic>Antheraea pernyi</italic> silk.</p>
</caption>
<graphic xlink:href="fbioe-09-777320-g007.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>A high concentration of Na<sub>2</sub>CO<sub>3</sub> solution can remove sericin more thoroughly, but it also destroys the structure of SF to a certain extent, resulting in the incomplete edge of SF and the decrease in cross-sectional diameter. At the same time, SF is degraded to a great extent and more peptide bonds, hydrogen bonds, and other secondary bonds are destroyed, forming shorter protein molecular chains and making the structure of SF loose and extended. Therefore, the viscosity of SF degummed with a high concentration of sodium carbonate is smaller.</p>
<p>Since the residual sericin around the core SF is considered to be the source of silk-related undesirable immune reactions, it is important to develop silk purification procedures by removing sericin thoroughly and retaining SF. In this study, Na<sub>2</sub>CO<sub>3</sub> solution with two different concentrations was chosen to remove sericin.</p>
<p>As a kind of glial cells, Schwann cells can not only guide the growth of regenerated axons to establish a precise innervation (<xref ref-type="bibr" rid="B30">Xu et al., 2013</xref>) but also secrete various neurotrophic factors, cell adhesion molecules, that are conducive to nerve regeneration (<xref ref-type="bibr" rid="B10">Guenard et al., 1992</xref>). Therefore, it is significant to figure out the growth of cells on silk fibroin scaffold. For this reason, we chose two different sources of silk and used different degumming methods to obtain different SF, and then SCs were co-cultured with membranes prepared with these SF.</p>
<p>On the SF-0.5% (SF treated with 0.5% Na<sub>2</sub>CO<sub>3</sub>) membrane, the cell survival rate was high and the cells took the standard spindle shape, showing a good growth situation. This is because SF obtained by degumming with 0.5% Na<sub>2</sub>CO<sub>3</sub> was purer, and there was no inflammatory reaction caused by residual sericin. Therefore, SF-0.5 promotes cell adhesion and supports cell proliferation.</p>
<p>In order to further explore the effect of different SF samples on cell survival and growth, we used iTRAQ technology to analyze the protein composition of different samples and took <italic>A. pernyi</italic> silk fibroin as a reference standard. <italic>A. pernyi</italic> silk contains a special RGD tripeptide sequence which is beneficial to cell adhesion and gives <italic>A. pernyi</italic> silk better elongation and elasticity. The iTRAQ results showed that the composition of ZJ-0.5 is the closest to that of <italic>A. pernyi</italic> silk. Therefore, ZJ-0.5 should be the best choice to support cell adhesion, proliferation, and growth, which is consistent with the results of the cell experiment.</p>
</sec>
<sec sec-type="conclusion" id="s5">
<title>Conclusion</title>
<p>In this paper, silk fibroin from different sources were treated with different degumming methods, their morphology, viscosity, and protein composition were analyzed, and silk fibroin membranes were prepared to co-culture with SC cells. The results indicated that the natural silk from Zhejiang Province that was treated with 0.05% Na<sub>2</sub>CO<sub>3</sub> solution had a fuller structure, higher apparent viscosity, and better protein composition, while SF obtained by degumming with 0.5% Na<sub>2</sub>CO<sub>3</sub> solution was more beneficial to cell adhesion and proliferation due to the thorough removal of sericin. Moreover, the different growth status of cells on different samples was explained by proteomic analysis. Overall, this study may offer an important basis for the construction of nerve conduit with suitable biomaterials.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s6">
<title>Data Availability Statement</title>
<p>The original contributions presented in the study are included in the article/Supplementary Material. Further inquiries can be directed to the corresponding authors.</p>
</sec>
<sec sec-type="ethics-statement" id="s7">
<title>Ethics Statement</title>
<p>The animal study was reviewed and approved by the Laboratory Animal Center of Nantong University.</p>
</sec>
<sec sec-type="author-contributions" id="s8">
<title>Author Contributions</title>
<p>YW contributed to conceptualization and writing&#x2014;review. YL contributed to conceptualization, methodology, and investigation. YG contributed to analysis and revision. XN contributed to methodology and investigation. JH contributed to investigation and writing&#x2014;review and editing. ZX contributed to formal analysis and investigation. XY contributed to investigation. YY contributed to conceptualization and supervision. YZ contributed to conceptualization, supervision, and writing&#x2014;review and editing.</p>
</sec>
<sec id="s9">
<title>Funding</title>
<p>This study was supported by the Priority Academic Program Development of Jiangsu Higher Education Institution (no. 21KJA430011), the National Key Research and Development Program of China (no. 2018YFC1105600), the Key Program of NSFC (no. 31830028) and the Undergraduate Innovation Training Programs of Nantong University (202010304031Z).</p>
</sec>
<sec sec-type="COI-statement" id="s10">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s11">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations or those of the publisher, the editors, and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.</p>
</sec>
<ack>
<p>The authors thank Professor Guicai Li for assistance in manuscript preparation.</p>
</ack>
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