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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Bioeng. Biotechnol.</journal-id>
<journal-title>Frontiers in Bioengineering and Biotechnology</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Bioeng. Biotechnol.</abbrev-journal-title>
<issn pub-type="epub">2296-4185</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">739438</article-id>
<article-id pub-id-type="doi">10.3389/fbioe.2021.739438</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Bioengineering and Biotechnology</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Mechano-Hypoxia Conditioning of Engineered Human Meniscus</article-title>
<alt-title alt-title-type="left-running-head">Szojka et&#x20;al.</alt-title>
<alt-title alt-title-type="right-running-head">Mechano-Hypoxia Conditioning of Meniscus</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Szojka</surname>
<given-names>Alexander R. A.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/760219/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>David Xinzheyang</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1413047/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Sopcak</surname>
<given-names>Malou E. J.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1405265/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Ma</surname>
<given-names>Zhiyao</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1438382/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kunze</surname>
<given-names>Melanie</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1172883/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Mulet-Sierra</surname>
<given-names>Aillette</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1171982/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Adeeb</surname>
<given-names>Samer M.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/236965/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Westover</surname>
<given-names>Lindsey</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/928706/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Jomha</surname>
<given-names>Nadr M.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/800843/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Adesida</surname>
<given-names>Adetola B.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/68325/overview"/>
</contrib>
</contrib-group>
<aff id="aff1">
<label>
<sup>1</sup>
</label>Department of Surgery, Faculty of Medicine and Dentistry, University of Alberta, <addr-line>Edmonton</addr-line>, <addr-line>AB</addr-line>, <country>Canada</country>
</aff>
<aff id="aff2">
<label>
<sup>2</sup>
</label>Department of Civil and Environmental Engineering, Faculty of Engineering, University of Alberta, <addr-line>Edmonton</addr-line>, <addr-line>AB</addr-line>, <country>Canada</country>
</aff>
<aff id="aff3">
<label>
<sup>3</sup>
</label>Department of Mechanical Engineering, Faculty of Engineering, University of Alberta, <addr-line>Edmonton</addr-line>, <addr-line>AB</addr-line>, <country>Canada</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/195882/overview">Sibylle Grad</ext-link>, AO Research Institute, Switzerland</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/812982/overview">Andreas Martin Seitz</ext-link>, Ulm University Medical Center, Germany</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/193833/overview">Matja&#x17e; Jeras</ext-link>, University of Ljubljana, Slovenia</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Adetola B. Adesida, <email>adesida@ualberta.ca</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Tissue Engineering and Regenerative Medicine, a section of the journal Frontiers in Bioengineering and Biotechnology</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>03</day>
<month>09</month>
<year>2021</year>
</pub-date>
<pub-date pub-type="collection">
<year>2021</year>
</pub-date>
<volume>9</volume>
<elocation-id>739438</elocation-id>
<history>
<date date-type="received">
<day>10</day>
<month>07</month>
<year>2021</year>
</date>
<date date-type="accepted">
<day>18</day>
<month>08</month>
<year>2021</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2021 Szojka, Li, Sopcak, Ma, Kunze, Mulet-Sierra, Adeeb, Westover, Jomha and Adesida.</copyright-statement>
<copyright-year>2021</copyright-year>
<copyright-holder>Szojka, Li, Sopcak, Ma, Kunze, Mulet-Sierra, Adeeb, Westover, Jomha and Adesida</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these&#x20;terms.</p>
</license>
</permissions>
<abstract>
<p>Meniscus fibrochondrocytes (MFCs) experience simultaneous hypoxia and mechanical loading in the knee joint. Experimental conditions based on these aspects of the native MFC environment may have promising applications in human meniscus tissue engineering. We hypothesized that <italic>in&#x20;vitro</italic> &#x201c;mechano-hypoxia conditioning&#x201d; with mechanical loading such as dynamic compression (DC) and cyclic hydrostatic pressure (CHP) would enhance development of human meniscus fibrocartilage extracellular matrix <italic>in&#x20;vitro</italic>. MFCs from inner human meniscus surgical discards were pre-cultured on porous type I collagen scaffolds with TGF-&#x3b2;3 supplementation to form baseline tissues with newly formed matrix that were used in a series of experiments. First, baseline tissues were treated with DC or CHP under hypoxia (HYP, 3% O<sub>2</sub>) for 5&#xa0;days. DC was the more effective load regime in inducing gene expression changes, and combined HYP/DC enhanced gene expression of fibrocartilage precursors. The individual treatments of DC and HYP regulated thousands of genes, such as chondrogenic markers <italic>SOX5/6</italic>, in an overwhelmingly additive rather than synergistic manner. Similar baseline tissues were then treated with a short course of DC (5 vs 60&#xa0;min, 10&#x2013;20% vs 30&#x2013;40% strain) with different pre-culture duration (3 vs 6&#xa0;weeks). The longer course of loading (60&#xa0;min) had diminishing returns in regulating mechano-sensitive and inflammatory genes such as <italic>c-FOS</italic> and <italic>PTGS2</italic>, suggesting that as few as 5&#xa0;min of DC was adequate. There was a dose-effect in gene regulation by higher DC strains, whereas outcomes were inconsistent for different MFC donors in pre-culture durations. A final set of baseline tissues was then cultured for 3&#xa0;weeks with mechano-hypoxia conditioning to assess mechanical and protein-level outcomes. There were 1.8&#x2013;5.1-fold gains in the dynamic modulus relative to baseline in HYP/DC, but matrix outcomes were equal or inferior to static controls. Long-term mechano-hypoxia conditioning was effective in suppressing hypertrophic markers (e.g., <italic>COL10A1</italic> 10-fold suppression vs static/normoxia). Taken together, these results indicate that appropriately applied mechano-hypoxia conditioning can support meniscus fibrocartilage development <italic>in&#x20;vitro</italic> and may be useful as a strategy for developing non-hypertrophic articular cartilage using mesenchymal stem&#x20;cells.</p>
</abstract>
<kwd-group>
<kwd>hypoxia</kwd>
<kwd>mechanical loading</kwd>
<kwd>dynamic compression</kwd>
<kwd>cyclic hydrostatic pressure</kwd>
<kwd>human meniscus</kwd>
<kwd>tissue engineering</kwd>
<kwd>extracellular matrix</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>The knee menisci are fibrocartilaginous structures that serve to protect the articular cartilage from excessive stress. Their functional extracellular matrix (ECM) is mainly composed of type I collagen (<xref ref-type="bibr" rid="B14">Fox et&#x20;al., 2012</xref>; <xref ref-type="bibr" rid="B29">Makris et&#x20;al., 2011</xref>). The inner meniscus regions contain lesser amounts of hyaline cartilage-type matrix components such as type II collagen and aggrecan (<xref ref-type="bibr" rid="B14">Fox et&#x20;al., 2012</xref>; <xref ref-type="bibr" rid="B29">Makris et&#x20;al., 2011</xref>). Meniscus ECM is synthesized by cells known as meniscus fibrochondrocytes (MFCs) (<xref ref-type="bibr" rid="B39">Sanchez-Adams and Athanasiou, 2009</xref>). In adults, the inner regions are avascular and unable to heal upon injury (<xref ref-type="bibr" rid="B5">Arnoczky and Warren, 1982</xref>). These injuries are associated with early osteoarthritis (OA) development (<xref ref-type="bibr" rid="B27">Lohmander et&#x20;al., 2007</xref>). The objective of meniscus tissue engineering is to generate cellular replacements that prevent OA development upon implantation.</p>
<p>Hypoxia (HYP) and mechanical loading are characteristic features of the native MFC environment that influence development of the avascular fibrocartilage phenotype in the inner meniscus regions (<xref ref-type="bibr" rid="B14">Fox et&#x20;al., 2012</xref>; <xref ref-type="bibr" rid="B29">Makris et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B28">Lund-Olesen, 1970</xref>). For example, the meniscus exists in synovial fluid with oxygen saturation ranging from 1&#x2013;7% and experiences axial compressive strains of &#x223c;5&#x2013;10% under body weight (<xref ref-type="bibr" rid="B28">Lund-Olesen, 1970</xref>; <xref ref-type="bibr" rid="B15">Freutel et&#x20;al., 2014</xref>). Individual HYP and mechanical loading [e.g., dynamic compression (DC), cyclic hydrostatic pressure (CHP)] treatments and their combination (&#x201c;mechano-hypoxia conditioning&#x201d;) can be useful tools for engineering cartilaginous tissues in cells including MFCs and mesenchymal stem cells (MSCs) through the molecular actions of factors including hypoxia-inducible factor-1 (HIF-1), SRY-Box transcription factor 9 (SOX9), and transforming growth factor-beta (TGF-&#x3b2;) (<xref ref-type="bibr" rid="B30">Mauck et&#x20;al., 2000</xref>; <xref ref-type="bibr" rid="B6">AufderHeide and Athanasiou, 2004</xref>; <xref ref-type="bibr" rid="B1">Adesida et&#x20;al., 2006</xref>; <xref ref-type="bibr" rid="B42">Suzuki et&#x20;al., 2006</xref>; <xref ref-type="bibr" rid="B7">Baker et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B12">Egli et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B22">Huey and Athanasiou, 2011</xref>; <xref ref-type="bibr" rid="B47">Tan et&#x20;al., 2011</xref>; <xref ref-type="bibr" rid="B16">Furumatsu et&#x20;al., 2012</xref>; <xref ref-type="bibr" rid="B23">Kanazawa et&#x20;al., 2012</xref>; <xref ref-type="bibr" rid="B17">Guilak et&#x20;al., 2014</xref>; <xref ref-type="bibr" rid="B31">McNulty and Guilak, 2015</xref>; <xref ref-type="bibr" rid="B51">Zellner et&#x20;al., 2015</xref>; <xref ref-type="bibr" rid="B3">Anderson and Johnstone, 2017</xref>; <xref ref-type="bibr" rid="B38">Salinas et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B44">Szojka et&#x20;al., 2019</xref>). Hypoxia and mechanical loading do not always have beneficial effects with regards to modulation of ECM components in engineered meniscus (e.g., types I and II collagen, aggrecan), however, suggesting the need to identify appropriate culture parameters (<xref ref-type="bibr" rid="B46">Szojka et&#x20;al., 2021a</xref>). In human engineered meniscus, a short-term (1-day) mechano-hypoxia treatment (30&#x2013;40% dynamic compressive strain, 3% O<sub>2</sub>) promoted fibrocartilage gene expression (<xref ref-type="bibr" rid="B45">Szojka et&#x20;al., 2021b</xref>) after a static pre-culture period, but the effects of long-term treatments and different loading types and parameters have not been explored (<xref ref-type="bibr" rid="B45">Szojka et&#x20;al., 2021b</xref>). Our overarching hypotheses were that longer mechano-hypoxia treatments would also have pro-fibrocartilage effects and that they would translate into beneficial outcomes at mechanical and protein levels.</p>
<p>Thus, we first compared mechano-hypoxia treatments (DC and CHP) and characterized the transcriptome response to a longer (5&#xa0;days) course of treatment than before (<xref ref-type="bibr" rid="B45">Szojka et&#x20;al., 2021b</xref>). We then manipulated loading incident duration, applied strain, and pre-culture duration to better understand how they affect gene expression. Using this information, we finally investigated the long-term (3&#xa0;weeks) outcomes of mechano-hypoxia conditioning after a pre-culture period for initial matrix formation.</p>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>Materials and Methods</title>
<p>Most culture methods and assays were performed identically to those described in previous work (<xref ref-type="bibr" rid="B2">Adesida et&#x20;al., 2012</xref>; <xref ref-type="bibr" rid="B25">Liang et&#x20;al., 2017</xref>). The experiments are outlined in <xref ref-type="fig" rid="F1">Figure&#x20;1</xref>. Experimental parameters in each experiment were selected based upon previous experiences and new data as it became available, including from pilot studies of scaffold seeding density, orbital shaking, and number of loading days (<xref ref-type="sec" rid="s10">Supplementary Material</xref>) (<xref ref-type="bibr" rid="B9">Bornes et&#x20;al., 2016</xref>; <xref ref-type="bibr" rid="B46">Szojka et&#x20;al., 2021a</xref>; <xref ref-type="bibr" rid="B45">Szojka et&#x20;al., 2021b</xref>; <xref ref-type="bibr" rid="B43">Szojka et&#x20;al., 2021c</xref>).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Experiment outlines. Created with Biorender.com (2021).</p>
</caption>
<graphic xlink:href="fbioe-09-739438-g001.tif"/>
</fig>
<sec id="s2-1">
<title>Ethics Statement and Sample Collection</title>
<p>Human inner meniscus tissues (<italic>n</italic>&#x20;&#x3d; 6 donors) were collected during arthroscopic partial meniscectomies with approval from the University of Alberta Health Research Ethics Board&#x2014;Biomedical Panel (&#x23;Pro00018778). Non-identifying donor details and their allocation to each experiment are presented in the <xref ref-type="sec" rid="s10">Supplementary Material</xref> Tables&#x20;file.</p>
</sec>
<sec id="s2-2">
<title>Cell and Tissue Pre-Culture</title>
<p>Meniscus fibrochondrocytes (MFCs) were isolated by collagenase-mediated digestion for 22&#xa0;h (Type II, 0.15% w/v, Worthington, NJ, United&#x20;States, &#x23;LS004176) and expanded in high-glucose (4.5&#xa0;g/L) Dulbecco&#x2019;s Modified Eagle Medium (DMEM) (Sigma-Aldrich, United&#x20;States, &#x23;D6429) with 10% fetal bovine serum (FBS, Sigma, United&#x20;States, &#x23;F1051-500ml) and combined TGF-&#x3b2;1 (1&#xa0;ng/ml, ProSpec, Israel, &#x23;cyt-716c) and basic fibroblast growth factor (FGF-2, 5&#xa0;ng/ml, ORF Genetics, Iceland, 01-A01110). They were stored in liquid nitrogen after passage 1 and then further expanded to passage 2 (6.5&#x20;&#xb1; 0.9 total population doublings).</p>
<p>MFCs were seeded onto bovine type I collagen scaffolds (diameter &#x3d; 6&#xa0;mm, height &#x3d; 3.5&#xa0;mm, pore size &#x3d; 115&#x20;&#xb1; 20&#xa0;&#x3bc;m, Integra LifeSciences, NJ, United&#x20;States) at a density of 5&#xd7;10<sup>6</sup>&#xa0;cells/cm<sup>3</sup> (<xref ref-type="bibr" rid="B2">Adesida et&#x20;al., 2012</xref>; <xref ref-type="bibr" rid="B9">Bornes et&#x20;al., 2016</xref>). No measurable glycosaminoglycan (GAG) and DNA contents were reported on these scaffolds, and compressive modulus was less than 2&#xa0;kPa (<xref ref-type="bibr" rid="B43">Szojka et&#x20;al., 2021c</xref>). Cell-seeded scaffolds were cultured for 3&#xa0;weeks for baseline matrix formation using a standard serum-free chondrogenic medium with 10&#xa0;ng/ml TGF-&#x3b2;3 (Proteintech Group, United&#x20;States, &#x23;HZ-1090) and normoxia (NRX) incubators (&#x223c;20% O<sub>2</sub>, 5% CO<sub>2</sub>). Tissues were cultured on a gentle orbital shaker in experiment I only (<xref ref-type="sec" rid="s10">Supplementary Material</xref>).</p>
</sec>
<sec id="s2-3">
<title>Manipulated Variables</title>
<p>After baseline matrix formation, tissue replicates were randomly assigned into conditions and transferred into an X3 incubator system to apply loading with continuous gas control (Biospherix, United&#x20;States). Dynamic compression (DC) and cyclic hydrostatic pressure (CHP) loading were applied, respectively, using a Biodynamic 5210 system (TA Instruments, United&#x20;States) and a MechanoCulture TR (CellScale, Canada). In experiments I ane II, tissues were housed in a previously-described custom bioreactor chamber that is optimal for short-term loading events (<xref ref-type="bibr" rid="B45">Szojka et&#x20;al., 2021b</xref>). In the longer-term experiment III, tissues were housed in commercial bioreactor chambers that permit automated loading events, i.e.,&#x20;with no user input apart from initial setup, to facilitate long-term experimentation. In experiments I and II, tissues were harvested 30&#xa0;min after the end of each loading period, whereas in experiment III they were harvested 6&#xa0;h after due to the time required to dismantle the bioreactors. Gene expression samples were stored in TRIzol reagent for later analysis (ThermoFisher Scientific, United&#x20;States, reference &#x23;15596018) at &#x2212;80&#xb0;C.</p>
<sec id="s2-3-1">
<title>Experiment I</title>
<p>Tissues were treated for 5&#xa0;days in continuous hypoxia (HYP) or NRX (3 or 20% O<sub>2</sub>). Tissues were loaded with either DC (regime I: 30&#x2013;40% sinusoidal strain; regime II: 1% compression in displacement control then off-load in load control to 2&#xa0;kPa to maintain platen contact with tissues) with frequency alternating 0.25 and 1&#xa0;Hz cycle-to-cycle, or CHP from 0&#x2013;0.5&#xa0;MPa (the maximum capability of the device) at 1&#xa0;Hz for 1&#xa0;h daily. The static strain offset in DC regime I (30%) was based upon previous work with type I collagen scaffolds and may not be unreasonable for free-swelling engineered meniscus tissues, given that free-swelling samples of native meniscus swelled by an average of 18% (<xref ref-type="bibr" rid="B4">Andrews et&#x20;al., 2015</xref>; <xref ref-type="bibr" rid="B40">Scholtes et&#x20;al., 2018</xref>; <xref ref-type="bibr" rid="B45">Szojka et&#x20;al., 2021b</xref>). The 1% strain/cycle parameter in DC regime II was based upon a test run that found 2% deformation per cycle led to much more strain accumulation (&#x3e;60%) than desired, and the 2&#xa0;kPa stress during decompression was the smallest value the actuator could reliably be controlled to without unstable and noisy motion. For DC static vehicle controls (DC VCtrl), tissues were brought into contact with the platens without compression. For CHP static controls (CHP VCtrl), tissues were sealed in the loading device under the appropriate oxygen level but were not loaded. There were four replicates for gene expression and 1 for histological analysis in all conditions for all donors (2 oxygen tensions &#xd7; 5 loading groups &#xd7; 5 replicates &#xd7; 3 donors &#x3d; 150 total tissues).</p>
</sec>
<sec id="s2-3-2">
<title>Experiment II</title>
<p>Baseline tissues were transferred into HYP 24&#xa0;h prior to DC loading (30&#x2013;40% strain, 1&#xa0;Hz) in the following groups: i. VCtrl (as before in experiment I), ii. 5c (5&#xa0;min), iii. 60c (60&#xa0;min), iv. 5c&#x2b;55r (5&#xa0;min of DC, 55&#xa0;min of rest), v. (5c &#x2b; 5r)&#xd7;6 (cyclic rest, 5&#xa0;min of DC and 5&#xa0;min of rest repeated six times) (<xref ref-type="bibr" rid="B12">Egli et&#x20;al., 2011</xref>). There were four replicates in all conditions for gene expression (5 conditions &#xd7; 4 replicates &#xd7; 3 donors &#x3d; 60 total tissues).</p>
<p>In the second part of experiment II, tissues were maintained in NRX for DC loading (5&#xa0;min, 1&#xa0;Hz). The baselines were pre-cultured for 3 or 6&#xa0;weeks and were then divided into three DC loading groups: VCtrl (as before), 10&#x2013;20% strain, 30&#x2013;40% strain. There were shortages of cells and thus not all the three donors could be represented in each condition and there were only 2-4 replicates per condition for gene expression (42 total tissues).</p>
</sec>
<sec id="s2-3-3">
<title>Experiment III</title>
<p>Baseline tissues (3-weeks pre-culture) were randomly divided into three groups: NRX/static, HYP/static, and HYP/DC with three donors cultured and loaded with DC simultaneously. Static groups were free swelling rather than true vehicle controls as in experiments I/II due to a shortage of available bioreactors. Medium was circulated from the bioreactors into a hypoxic incubator chamber for gas exchange using a peristaltic pump. Based on outcomes from experiments I/II, DC loading was applied four times a day from 30&#x2013;40% strain at 1&#xa0;Hz for 5&#xa0;min per loading incident for 3&#xa0;weeks. After 1&#xa0;week, strain levels were increased to 35&#x2013;45% to compensate for some permanent compaction. There were four replicates per condition (the maximum capacity of the bioreactor platens), which were cut in half (eight total halves) and allocated to gene expression (three halves), glycosaminoglycan (GAG) and DNA (three halves), and histology (two halves) (3 conditions &#xd7; 4 replicates &#xd7; 3 donors &#x3d; 36 tissues in total).</p>
</sec>
</sec>
<sec id="s2-4">
<title>Outcome Variables</title>
<sec id="s2-4-1">
<title>RNA Extraction, Quantitative Real-Time Polymerase Chain Reaction, and RNA-Seq</title>
<p>RNA was isolated with isopropanol precipitation or PureSPIN MINI spin columns (Luna Nanotech, Canada, &#x23;NK051-250). For experiment I, equal masses of RNA from replicates within conditions and donors was combined into pools to reduce nuisance inter-replicate variability. RNA was reverse transcribed into cDNA and amplified by quantitative real-time polymerase chain reaction (qRT-PCR) using gene specific primers listed in the <xref ref-type="sec" rid="s10">Supplementary Material</xref> Tables&#x20;file.</p>
<p>Data was presented using the 2<sup>&#x394;&#x394;Ct</sup> method using the mean expression level of reference genes <italic>&#x3b2;-actin</italic>, <italic>B2M</italic>, and <italic>YHWAZ</italic> and reference groups for fold changes as indicated in figure captions (<xref ref-type="bibr" rid="B26">Livak and Schmittgen, 2001</xref>). Statistical analysis was performed in SPSS 27 (IBM, United&#x20;States) using &#x394;Ct values. Analysis of variance (ANOVA) was performed with treatment groups as fixed factors and donor as a random factor followed by Tukey&#x2019;s post hoc test in experiments II/III. No <italic>p</italic> value corrections were applied unless indicated (i.e.,&#x20;in the RNA-seq dataset for q values). Further, differences were considered as significant if <italic>p</italic>&#x20;&#x3c; 0.05 unless otherwise indicated. The Shapiro-Wilk test was used to assess approximate normality. Supplementary data files are available (<xref ref-type="sec" rid="s10">Supplementary Material</xref>).</p>
<p>In experiment I, the RNA pools from DC 30&#x2013;40% groups were sequenced at the University of British Columbia Biomedical Research Centre using Illumina NextSeq 500 with 20 million paired end 42&#xa0;bp &#xd7; 42&#xa0;bp reads. Partek&#xae; Flow&#xae; software was used for analysis (Version 10.0.21.0302, Copyright &#xa9; 2021, Partek Inc., St. Louis, MO, United&#x20;States). Alignment to the human genome hg38 was performed using STAR-2.7.3a and genes were quantified using the Partek E/M algorithm to an annotation model (hg38&#x2013;RefSeq Transcripts 94; 2020-05-11). A noise reduction filter was applied, and gene counts were normalized using the Add: 1.0, TMM, and Log 2.0 methods. Differential expression analysis was conducted using analysis of variance (ANOVA) for oxygen tension and mechanical loading with donor as a random factor. Significant differences in gene expression were assessed using a combination of minimum total gene counts, unadjusted <italic>p</italic>-values, adjusted <italic>p</italic>-values for false discovery rate (FDR) (q-values), and minimum absolute fold-changes. Principal component analysis (PCA), heatmaps, and visualization of differentially expressed genes (DEGs) were all conducted in Partek Flow software. MCL (Markov Cluster Algorithm) was used to cluster genes in the graph convolution network (GCN) by the structure of the node-edge graph. The raw RNA-seq datasets are deposited in the NCBI GEO database (accession: GSE180467).</p>
</sec>
<sec id="s2-4-2">
<title>Histology and Glycosaminoglycan/DNA</title>
<p>Tissues were fixed in formalin overnight at 4&#xb0;C, paraffin-embedded, sectioned at 5&#xa0;&#x3bc;m, and stained for Safranin O (Sigma-Aldrich, United&#x20;States, &#x23;S2255-25G), Fast Green FGF (Sigma-Aldrich, United&#x20;States, &#x23;F7258-25G), and Haematoxylin (Sigma-Aldrich, United&#x20;States, &#x23;MHS32-1L) or else labelled with primary antibodies against human types I and II collagens (rabbit anti-human type I collagen, Cedarlane, Canada, &#x23;CL50111AP-1; mouse anti-human type II collagen, &#x23;II-II6B3, Developmental Studies Hybridoma Bank, United&#x20;States) for immunofluorescent visualization by secondary antibodies (goat anti-rabbit, &#x23;ab150080, Abcam, United&#x20;Kingdom; goat anti-mouse, &#x23;ab150117, Abcam, United&#x20;Kingdom). There was no detected cross-reaction of the human anti-type I collagen antibody to the bovine type I collagen scaffold. For GAG and DNA, tissues were digested overnight in proteinase K (Sigma-Aldrich, United&#x20;States, &#x23;P2308). GAG was measured by the dimethylmethylene blue (DMMB, Sigma-Aldrich, United&#x20;States, &#x23;341088) assay with a chondroitin sulfate standard (Sigma-Aldrich, United&#x20;States, &#x23;C8529) and DNA by the CyQUANT&#x20;Cell Proliferation Assay (ThermoFisher Scientific, United&#x20;States, &#x23;C7026).</p>
</sec>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec id="s3-1">
<title>Experiment I: 5-days Mechano-hypoxia</title>
<p>Baseline tissues (3-weeks pre-culture) were mainly fibrous with minimal staining for hyaline cartilage-type matrix (<xref ref-type="fig" rid="F2">Figure&#x20;2A</xref>). Strain accumulated to 40&#x2013;45% each day in dynamic compression (DC) 1%/2&#xa0;kPa with peak stresses being lower than in DC 30&#x2013;40% (<xref ref-type="sec" rid="s10">Supplementary Figure S4.1</xref>); this indicated that DC 1%/2&#xa0;kPa was the less aggressive DC loading regime. <italic>c-FOS</italic> and <italic>VEGF</italic> were measured as loading and hypoxia (HYP)-sensitive genes, respectively, and <italic>SOX9</italic> as an indicator for hyaline cartilage-type matrix expression. DC 30&#x2013;40% upregulated <italic>c-FOS</italic> and <italic>VEGF</italic> compared to the static vehicle controls. However, there were no significant differences in gene regulation for DC 1%/2&#xa0;kPa and cyclic hydrostatic pressure (CHP) (<xref ref-type="fig" rid="F2">Figure&#x20;2B</xref>). HYP (5&#xa0;days) promoted <italic>VEGF</italic> and <italic>SOX9</italic> compared to normoxia (NRX) and to a greater extent than the 1-day HYP treatment previously (<xref ref-type="fig" rid="F2">Figure&#x20;2B</xref>) (<xref ref-type="bibr" rid="B27">Lohmander et&#x20;al., 2007</xref>). DC 30&#x2013;40% was deemed the most effective loading regime and thus it proceeded to RNA sequencing.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Experiment I: <bold>(A)</bold> Representative baseline tissue matrix morphology (3&#xa0;weeks preculture), and <bold>(B)</bold> gene expression in response to 5-days of mechano-hypoxia treatment. DC and CHP each had their own VCtrl group since the loading occurred in different chambers. Fold changes are with respect to the appropriate N/VCtrl group within each donor, and values for each gene of interest are normalized to the mean expression of housekeeping genes <italic>&#x3b2;-actin</italic>, <italic>B2M</italic>, and <italic>YWHAZ</italic>. Expression was measured 30&#xa0;min after the final loading event. Two-way ANOVA was performed twice, once for DC and once for CHP groups. &#x201c;DC&#x201d; and &#x201c;Oxygen&#x201d; indicate that these factors had a significant main effect. &#x2a;: <italic>p</italic>&#x20;&#x3c; 0.05, &#x2a;&#x2a;: <italic>p</italic>&#x20;&#x3c; 0.01. CHP, Cyclic hydrostatic pressure; DC, dynamic compression; H, hypoxia/HYP; N, normoxia/NRX; VCtrl, static vehicle control.</p>
</caption>
<graphic xlink:href="fbioe-09-739438-g002.tif"/>
</fig>
<sec id="s3-1-1">
<title>Experiment I: 5-days Mechano-Hypoxia Transcriptomes</title>
<p>Principal components (PCs) 1&#x2013;3 explained 63.5% of variability and showed clustering for oxygen tension, DC, and donor, This indicated that each variable had generally consistent effects (<xref ref-type="fig" rid="F3">Figure&#x20;3</xref>).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Experiment I: Principal component analysis and heatmaps of the RNA-seq dataset from the 5-days mechano-hypoxia treatment. Expression was measured 30&#xa0;min after the final loading event. DC, dynamic compression; HYP, hypoxia; NRX, normoxia; PC, principal component; VCtrl, static vehicle control.</p>
</caption>
<graphic xlink:href="fbioe-09-739438-g003.tif"/>
</fig>
<p>Most genes were regulated independently, i.e.,&#x20;by only one treatment (<xref ref-type="table" rid="T1">Table&#x20;1</xref>). A smaller set of genes were coregulated, i.e.,&#x20;with significant effects for both hypoxia and DC (<xref ref-type="table" rid="T1">Table&#x20;1</xref>). There were few genes detected with significant DC&#x2a;HYP interactions, i.e.,&#x20;where gene regulation by one variable depended on the level of the other (<xref ref-type="table" rid="T1">Table&#x20;1</xref>). The interaction <italic>p</italic> value distribution skewed right, indicating that there were true interactions, but that detection power was limiting for individual genes (<xref ref-type="fig" rid="F4">Figure&#x20;4A</xref>, left). It was inferred that a biologically relevant interaction would have affected groups of related genes, resulting in regulation profiles that could be detected by cluster analysis. Two clusters were identified among the 328 genes with interaction <italic>p</italic>&#x20;&#x3c; 0.01 (selected as a more conservative threshold for this analysis) that contained a significantly larger fraction of the 328 genes than observed in ten negative control lists of equal size with interaction <italic>p</italic> values descending from <italic>p</italic>&#x20;&#x3d; 1 based on one sample t&#x20;tests (<xref ref-type="fig" rid="F4">Figure&#x20;4A</xref>, centre). This indicated that these genes were likely being regulated together due to a true interaction. Within the first cluster, genes tended to be downregulated by DC and the effect was more prominent in hypoxia, whereas in the second cluster genes tended to be upregulated by DC and the effect was more prominent in hypoxia (<xref ref-type="fig" rid="F4">Figure&#x20;4A</xref>, right). The lists of genes in these clusters are provided in the <xref ref-type="sec" rid="s10">Supplementary Material</xref>. Of the four genes with significant (q &#x3c; 0.05) interactions, three appeared in cluster 1 (<xref ref-type="sec" rid="s10">Supplementary Figure&#x20;S4.2</xref>).</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Number of genes for each factor meeting combinations of filters.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th colspan="3" align="center">Filter applied</th>
<th colspan="4" align="center">Genes in group</th>
</tr>
<tr>
<th align="left">Probabilistic</th>
<th align="center">Count</th>
<th align="center">&#x7c;FC&#x7c;</th>
<th align="center">DC</th>
<th align="center">HYP</th>
<th align="center">Coregulation</th>
<th align="center">Interaction</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">
<italic>p</italic>&#x20;&#x3c; 0.05</td>
<td align="center">None</td>
<td align="center">None</td>
<td align="center">5,392</td>
<td align="center">6,181</td>
<td align="center">2,660</td>
<td align="center">1,288</td>
</tr>
<tr>
<td align="left">
<italic>p</italic>&#x20;&#x3c; 0.05</td>
<td align="center">&#x3e;250</td>
<td align="center">None</td>
<td align="center">2,804</td>
<td align="center">3,413</td>
<td align="center">1,516</td>
<td align="center">692</td>
</tr>
<tr>
<td align="left">q &#x3c; 0.05</td>
<td align="center">None</td>
<td align="center">None</td>
<td align="center">4,048</td>
<td align="center">5,145</td>
<td align="center">1,682</td>
<td align="center">4</td>
</tr>
<tr>
<td align="left">q &#x3c; 0.05</td>
<td align="center">&#x3e;250</td>
<td align="center">None</td>
<td align="center">2,128</td>
<td align="center">2,915</td>
<td align="center">1,001</td>
<td align="center">4</td>
</tr>
<tr>
<td align="left">q &#x3c; 0.05</td>
<td align="center">&#x3e;250</td>
<td align="center">&#x3e;1.5</td>
<td align="center">122</td>
<td align="center">377</td>
<td align="center">29</td>
<td align="center">NA</td>
</tr>
<tr>
<td align="left">q &#x3c; 0.05</td>
<td align="center">&#x3e;250</td>
<td align="center">&#x3e;2</td>
<td align="center">29</td>
<td align="center">104</td>
<td align="center">7</td>
<td align="center">NA</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Coregulation indicates significance for both DC and HYP factors.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Experiment I: <bold>(A)</bold> Interaction analysis after the 5-days mechano-hypoxia treatment. The dashed red line indicates the expected bin height for a uniform distribution. <bold>(B)</bold> Genes with the largest absolute fold changes for each group (q &#x3c; 0.05, total count &#x3e;250). Expression was measured 30&#xa0;min after the final loading event. CI: confidence interval. Neg, negative.</p>
</caption>
<graphic xlink:href="fbioe-09-739438-g004.tif"/>
</fig>
<p>The top HYP-regulated genes were more clearly related to fibrocartilage matrix (e.g., <italic>COL2A1</italic>, <italic>SOX9</italic>) than the top DC-regulated genes, which instead tended to be nucleus or inflammation related (e.g., <italic>c-FOS</italic>, <italic>PTGS2</italic>) (<xref ref-type="fig" rid="F4">Figure&#x20;4B</xref>). Gene Ontology (GO) terms related to the extracellular matrix (ECM) were then used to generate a gene list to more directly assess how each treatment affected fibrocartilage matrix expression (<xref ref-type="fig" rid="F4">Figure&#x20;4</xref>, bottom right). Both treatments but especially HYP promoted a favourable expression profile in these genes (<xref ref-type="fig" rid="F4">Figure&#x20;4B</xref>, bottom right). GO analysis for the interaction clusters, individual treatments, and coregulation genes are provided in <xref ref-type="sec" rid="s10">Supplementary Figure S4.3</xref>. There were no differences between groups in type I or II collagen immunofluorescence, indicating the gene expression effects had not yet resulted in detectable differences between groups in fibrocartilage matrix (<xref ref-type="sec" rid="s10">Supplementary Figure S4.4A</xref>).</p>
</sec>
</sec>
<sec id="s3-2">
<title>Experiment II: Loading Incident Duration, Strain and Pre-Culture Duration Parameters</title>
<sec id="s3-2-1">
<title>Loading Incident Duration</title>
<p>Relaxation reached 50, 90, and 95% completion after 14&#x20;&#xb1; 4, 336&#x20;&#xb1; 109, and 814&#x20;&#xb1; 161 cycles based on the 60c group (<xref ref-type="sec" rid="s10">Supplementary Figure S4.5</xref>). The stress vs time curves clearly showed there was an early &#x201c;viscous, fast relaxation&#x201d; zone and a late &#x201c;elastic, slow-relaxation&#x201d; zone (<xref ref-type="sec" rid="s10">Supplementary Figure S4.5</xref>). Accordingly, gene expression differences induced by DC quickly saturated and reached similar outcomes after accounting for the time lag in harvest, i.e.,&#x20;by comparing the 60c and 5c &#x2b; 55r groups (<xref ref-type="fig" rid="F5">Figure&#x20;5A</xref> and <xref ref-type="sec" rid="s10">Supplementary Figure S4.6</xref>). The selection of measured genes was related to the early response to stimuli, inflammation, the hyaline cartilage phenotype, angiogenesis, and matrix degradation. DC loading in the viscous, fast-relaxation zone was clearly most important for regulation of these genes. The stress began to fall to 0&#xa0;kPa within the decompression phase of a single cycle after just 50 cycles for all donors, indicating that the tissues were not fully rebounding (<xref ref-type="fig" rid="F5">Figure&#x20;5B</xref>). The effective strain amplitude, i.e.,&#x20;the actual strain amplitude experienced by the tissues while in contact with the platen, fell to about 5% by the end of the loading period, helping to explain why continued cycling beyond 5&#xa0;min had marginal effects on gene expression (<xref ref-type="fig" rid="F5">Figure&#x20;5B</xref>).</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Experiment II: <bold>(A)</bold> The gene expression effects of DC loading incident duration. Fold changes are with respect to the static vehicle control group within each donor, and values for each gene of interest are normalized to the mean expression of housekeeping genes <italic>&#x3b2;-actin</italic>, <italic>B2M</italic>, and <italic>YWHAZ</italic>. Expression was measured 30&#xa0;min after the loading event. &#x201c;DC&#x201d; indicates that a group is significantly different than the static vehicle control. &#x201c;t&#x201d; indicates that a DC group is significantly different than 5c. &#x201c;a&#x201d; indicates that a 60-min group is significantly different than 60c. &#x2a;&#x2a;&#x2a;: <italic>p</italic>&#x20;&#x3c; 0.001, &#x2a;&#x2a;: <italic>p</italic>&#x20;&#x3c; 0.01, &#x2a;: <italic>p</italic>&#x20;&#x3c; 0.05, &#x2b;: <italic>p</italic>&#x20;&#x3c; 0.10. <bold>(B)</bold> Loading analysis for the 60c group. The arrowheads show the direction of onloading and offloading. The re-contact strains were defined as the points within the compression phase when the force rose above 0&#xa0;N, indicating contact. The effective strain amplitudes are calculated as 40% minus the strain at the re-contact points.</p>
</caption>
<graphic xlink:href="fbioe-09-739438-g005.tif"/>
</fig>
</sec>
<sec id="s3-2-2">
<title>Strain and Pre-Culture Duration</title>
<p>The stress response to DC from 30&#x2013;40% strain was about 5&#xd7; greater than that from 10&#x2013;20% (<xref ref-type="fig" rid="F6">Figure&#x20;6A</xref>). Although the initial dynamic stress responses for longer pre-culture periods were not always larger, the equilibrium dynamic stress responses for 6-weeks of pre-culture were at least double those for the 3-weeks groups (<xref ref-type="fig" rid="F6">Figure&#x20;6A,B</xref>). There was much more matrix staining positively for sulphated proteoglycans in 6-weeks compared to 3-weeks groups for all three donors (<xref ref-type="fig" rid="F6">Figure&#x20;6C</xref>). There was a general dose response for strain and the magnitude of <italic>c-FOS</italic>, <italic>SO&#xd7;9</italic>, and <italic>PTGS2</italic> induction regardless of pre-culture duration, which was consistent with the much greater stress response under DC with higher strains. In contrast, the effects of longer pre-culture durations did not show a consistent trend for the two available donors: donor D had consistently higher fold inductions of measured genes for 3-weeks groups, whereas donor F outcomes were mixed (<xref ref-type="fig" rid="F6">Figure&#x20;6D</xref>).</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>Experiment II: The matrix and gene expression effects of pre-culture duration and strain. <bold>(A)</bold> Representative strain and stress vs time curves. <bold>(B)</bold> Mechanical analysis. <bold>(C)</bold> Representative safranin-O staining after loading in each group. <bold>(D)</bold> Gene expression post-DC loading by qRT-PCR. Fold changes are respect to the VCtrl group within each time point within each donor, and values for each gene of interest are normalized to the mean expression of housekeeping genes <italic>&#x3b2;-actin</italic>, <italic>B2M</italic>, and <italic>YWHAZ</italic>. Expression was measured 30&#xa0;min after the loading event. Analysis of variance was restricted to 3-weeks groups because only two donors were available at 6&#xa0;weeks. &#x2a;: <italic>p</italic>&#x20;&#x3c; 0.05, &#x2a;&#x2a;: <italic>p</italic>&#x20;&#x3c; 0.01, &#x2a;&#x2a;&#x2a;: <italic>p</italic>&#x20;&#x3c; 0.001.</p>
</caption>
<graphic xlink:href="fbioe-09-739438-g006.tif"/>
</fig>
</sec>
</sec>
<sec id="s3-3">
<title>Experiment III: Long-Term Mechano-Hypoxia Conditioning</title>
<p>The dynamic modulus increased over the 3-weeks mechano-hypoxia conditioning period with some donors showing a sigmoidal growth curve (<xref ref-type="fig" rid="F7">Figure&#x20;7A</xref>). The fold increase in equilibrium dynamic modulus during loading ranged from 1.8 to 5.1-fold after adjustment for the increased strain magnitude in weeks 2/3 (<xref ref-type="fig" rid="F7">Figure&#x20;7A</xref>). Histologically, tissues in HYP/DC appeared more rectangular in cross-section due to the applied deformation and there were no differences among 6-weeks groups in collagen immunofluorescence (<xref ref-type="fig" rid="F7">Figure&#x20;7B</xref> and <xref ref-type="sec" rid="s10">Supplementary Figure S4.4B</xref>). A core region with reduced matrix staining and cell densities developed by the 3-weeks baseline and persisted in all groups for all donors (<xref ref-type="fig" rid="F7">Figure&#x20;7B</xref>). There was also occasionally decreased cell density in these regions. Among 6-weeks groups, staining for hyaline cartilage-type matrix constituents was highest in HYP/stat and lowest HYP/DC, which was consistent with glycosaminoglycan (GAG) outcomes and mRNA expression of matrix precursors (<xref ref-type="fig" rid="F7">Figures 7B,C</xref>, <xref ref-type="fig" rid="F8">8</xref>). <italic>SOX9</italic> expression was inconsistent with these outcomes, being highest in DC/HYP; this suggested that hyaline cartilage-related matrix gene transcription was being influenced by other factors (<xref ref-type="fig" rid="F8">Figure&#x20;8</xref>). Hypertrophic markers were profoundly suppressed by mechano-hypoxia conditioning; for example, <italic>COL10A1</italic> was suppressed 2.5-fold by HYP alone and a further 3.5-fold by DC for a total of 9-fold suppression compared to NRX/stat (<xref ref-type="fig" rid="F8">Figure&#x20;8</xref>).</p>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption>
<p>Experiment III: Mechanical and protein outcomes from 3&#xa0;weeks of mechano-hypoxia conditioning after a 3-weeks baseline pre-culture period (up to a 6-weeks total culture duration). <bold>(A)</bold> Mechanical performance over time for each donor. The strain offset was increased from 30 to 35% on loading day 8, resulting in a jump in properties. For clarity, properties for only 1 of four loading events is presented per day. <bold>(B)</bold> Representative tissue matrix phenotypes. <bold>(C)</bold> Biochemistry. GAG, glycosaminoglycans; WW, wet weight. &#x2a;: <italic>p</italic>&#x20;&#x3c; 0.05, &#x2a;&#x2a;: <italic>p</italic>&#x20;&#x3c; 0.01, &#x2a;&#x2a;&#x2a;: <italic>p</italic>&#x20;&#x3c; 0.001.</p>
</caption>
<graphic xlink:href="fbioe-09-739438-g007.tif"/>
</fig>
<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption>
<p>Experiment III: Gene expression by qRT-PCR after the 3-weeks mechano-hypoxia treatment. Expression was measured 6&#xa0;h after the final loading event. Fold changes are with respect to the NRX/static group within each donor, and values for each gene of interest are normalized to the mean expression of housekeeping genes <italic>&#x3b2;-actin</italic>, <italic>B2M</italic>, and <italic>YWHAZ</italic>. &#x2a;: <italic>p</italic>&#x20;&#x3c; 0.05, &#x2a;&#x2a;: <italic>p</italic>&#x20;&#x3c; 0.01, &#x2a;&#x2a;&#x2a;: <italic>p</italic>&#x20;&#x3c; 0.001.</p>
</caption>
<graphic xlink:href="fbioe-09-739438-g008.tif"/>
</fig>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>This article investigated &#x201c;mechano-hypoxia conditioning&#x201d; as a strategy for tissue engineering the inner meniscus. Hypoxia (HYP) and dynamic compression (DC) 30&#x2013;40% affected gene expression in human meniscus fibrochondrocyte (MFC)-based engineered tissues in an overwhelmingly additive manner after 5&#xa0;days. It is likely that some more synergistic interactions existed than were detected but that detection power was limiting for the RNA-seq analysis. HYP and DC 30&#x2013;40% also drove an increase in expression of hyaline cartilage-related precursors, indicating that the mechano-hypoxia treatment was promoting fibrocartilage formation. Thus, our hypothesis that the 5-days mechano-hypoxia treatment would have pro-fibrocartilage effects at the gene expression level was supported. Previously, Pauwels proposed that hydrostatic pressure, developing during compressive loading of tissues, is the specific stimulus to induce formation of cartilaginous matrix in the body (<xref ref-type="bibr" rid="B34">Pauwels, 1980</xref>). Krompecher later proposed that the hydrostatic pressure generated during mechanical loading forces vessels closed by overcoming blood pressure; this reduces blood supply to related tissues and results in a hypoxic environment that is instead the specific chondrogenic stimulus (<xref ref-type="bibr" rid="B24">Krompecher and T&#xf3;th, 1964</xref>). The outcomes of experiment I indicate that mechanical loading can be a direct promoter of cartilage-related gene expression independently of low oxygen. These effects were primarily driven by hypoxia rather than DC, however, which is generally consistent with Krompecher&#x2019;s view. The previous studies that directly evaluate combined hypoxia and mechanical loading usually showed pro-chondrogenic effects of hypoxia but mixed outcomes from cyclic and intermittent hydrostatic pressure and dynamic compression (<xref ref-type="bibr" rid="B11">Domm et&#x20;al., 2000</xref>; <xref ref-type="bibr" rid="B20">Hansen et&#x20;al., 2001</xref>; <xref ref-type="bibr" rid="B46">Szojka et&#x20;al., 2021a</xref>; <xref ref-type="bibr" rid="B45">Szojka et&#x20;al., 2021b</xref>; <xref ref-type="bibr" rid="B50">Wernike et&#x20;al., 2008</xref>; <xref ref-type="bibr" rid="B32">Meyer et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B33">Parker et&#x20;al., 2013</xref>). One of these studies, applying porcine mesenchymal stem cells (MSCs), noted that, &#x201c;low oxygen is a more potent promoter of chondrogenesis than dynamic compression.&#x201d; The outcomes of experiment I (<xref ref-type="fig" rid="F2">Figures 2</xref>, <xref ref-type="fig" rid="F4">4</xref>) affirm this statement for human MFCs at the gene expression level (<xref ref-type="bibr" rid="B32">Meyer et&#x20;al., 2010</xref>).</p>
<p>Outcomes in experiments I/II suggest that the magnitude of the gene expression response to mechanical loading is closely related to the aggression of the loading regime (<xref ref-type="fig" rid="F2">Figures 2</xref>, <xref ref-type="fig" rid="F6">6</xref>). To be useful for meniscus tissue engineering, Cyclic hydrostatic pressure (CHP) loading and hybrid displacement-load control regimes such as the DC 1%/2&#xa0;kPa group introduced here will require more aggressive parameters than those used here, such as higher hydrostatic pressures (<xref ref-type="bibr" rid="B19">Gunja et&#x20;al., 2009</xref>; <xref ref-type="bibr" rid="B18">Gunja and Athanasiou, 2010</xref>) and applied strains per cycle (e.g., 1.5%/2&#xa0;kPa). Platen liftoff has long been recognized as a problem in DC loading studies and is typically addressed by use of static strain offsets or reduced loading frequencies (<xref ref-type="bibr" rid="B30">Mauck et&#x20;al., 2000</xref>). The hybrid DC regime introduced here provides a unique solution to the problem of platen liftoff that could be useful in other tissue engineering applications of&#x20;DC.</p>
<p>Experiment II showed that to induce gene expression changes: i. the early loading period is most important, and ii. there is a dose effect with increasing strain (<xref ref-type="fig" rid="F5">Figures 5</xref>, <xref ref-type="fig" rid="F6">6</xref>). Previous researchers identified that DC systems reached a mechanical steady state within minutes, which we confirmed at the gene expression level (<xref ref-type="bibr" rid="B36">Puetzer and Bonassar, 2016</xref>). The (5c &#x2b; 5r) &#xd7; 6 group showed partial recovery of the stress response for each loading incident but without differential gene regulation to the other 60-min groups; longer cyclic rest periods may thus be more promising (<xref ref-type="fig" rid="F5">Figure&#x20;5</xref>). The results complement what has been described as a fundamental rule in bone: the adaptive loading response saturates quickly, causing diminishing returns for extended loading incident durations (<xref ref-type="bibr" rid="B49">Turner, 1998</xref>). Many DC parameters need to be appropriately selected in tissue engineering to achieve beneficial outcomes (<xref ref-type="bibr" rid="B3">Anderson and Johnstone, 2017</xref>; <xref ref-type="bibr" rid="B38">Salinas et&#x20;al., 2018</xref>). Loading events as short as 5&#xa0;min make it much more feasible to optimize these parameters, which is a useful outcome for the tissue engineering field. The observed dose effect with strain (an increased static strain offset from 10 to 30% with a fixed dynamic strain amplitude of 10%) indicates that DC can directly induce <italic>SOX9</italic> expression rather than only doing so indirectly through enhanced medium mixing and platen-induced hypoxia (<xref ref-type="fig" rid="F6">Figure&#x20;6</xref>). More investigation is required regarding the effects of pre-culture duration on gene regulation in response to DC, as the two available donors showed different trends.</p>
<p>Mechano-hypoxia conditioning (3&#xa0;weeks) supported increases in mechanical properties with mixed matrix outcomes that included suppression of hypertrophy at the mRNA level (<xref ref-type="fig" rid="F7">Figures 7</xref>, <xref ref-type="fig" rid="F8">8</xref>). Normal growth with culture time surely contributed to the mechanical gains as previously reported, but it is doubtful that it could have led to the sigmoid-shaped mechanical growth curves (<xref ref-type="fig" rid="F7">Figure&#x20;7</xref>) (<xref ref-type="bibr" rid="B43">Szojka et&#x20;al., 2021c</xref>). These could instead have been the product of factors such as inflammation early on and depletion of growth factors in the medium in the late stages. Each donor had a different growth profile, suggesting that efforts to tailor loading regimes on a donor-to-donor basis could be fruitful (<xref ref-type="fig" rid="F7">Figure&#x20;7</xref>). The increase in final dynamic modulus in experiment II (for the available donors), conducted in parallel from 3 to 6&#xa0;weeks in free-swelling culture compared to the mechano-hypoxia treatment in experiment III (after adjustment for higher strain levels in the second 2&#xa0;weeks) were 2.2 vs. 5.1-fold (Donor D) and 1.3 vs. 1.8-fold (Donor F) (<xref ref-type="fig" rid="F6">Figures 6</xref>, <xref ref-type="fig" rid="F7">7</xref>). This suggests that the mechano-hypoxia treatment indeed accelerated mechanical property development. Mechanical loading has previously been reported to have beneficial outcomes on mechanical properties (<xref ref-type="bibr" rid="B7">Baker et&#x20;al., 2010</xref>; <xref ref-type="bibr" rid="B22">Huey and Athanasiou, 2011</xref>; <xref ref-type="bibr" rid="B36">Puetzer and Bonassar, 2016</xref>). DC led to superior outcomes at 2 but not 6&#xa0;weeks compared to static controls with bovine MFCs (<xref ref-type="bibr" rid="B8">Ballyns and Bonassar, 2011</xref>), which may be consistent with the tendency for mechanical properties to plateau here. Matrix staining for sulphated proteoglycans appeared qualitatively reduced in HYP/DC compared to static controls, which could be due to GAG loss to the medium (<xref ref-type="fig" rid="F7">Figure&#x20;7B</xref>) (<xref ref-type="bibr" rid="B35">Puetzer et&#x20;al., 2012</xref>). There was no significant upregulation of <italic>c-FOS</italic> in HYP/DC, which is accounted for by the 6-h delay in harvest after the final loading event (<xref ref-type="fig" rid="F8">Figure&#x20;8</xref>). Interestingly, matrix precursor expression in the mechano-hypoxia treatment was inferior to free-swelling controls despite HYP/DC having increased <italic>SOX9</italic>. Thus, altogether our hypothesis that extended mechano-hypoxia conditioning would lead to superior mechanical properties and extracellular matrix (ECM) protein expression was only partially supported. Future investigations are needed to understand the processes underlying this outcome in order to achieve gains in ECM properties with long-term loading (<xref ref-type="fig" rid="F8">Figure&#x20;8</xref>) (<xref ref-type="bibr" rid="B21">Huang et&#x20;al., 2010</xref>).</p>
<p>This study had several limitations. Inclusion of more donors in all experiments would have increased detection power; at best three donors were included in each experiment albeit with multiple tissue replicates and experimental designs favourable to detection of main effects, e.g., the factorial investigation in experiment I. A second limitation is that RNA-seq was only performed after the relatively short 5-days mechano-hypoxia treatment in experiment I. In longer-term mechano-hypoxia conditioning, tissue properties would diverge due to the unique gene expression profiles in each group (as identified in experiment I), likely affecting the reception of and response to mechano-hypoxia signals. Thus, many more gene interactions could be identified with longer-term treatments due to differing tissue properties; nevertheless, the results here indicate that the early molecular response to the treatments has few interactions (<xref ref-type="fig" rid="F4">Figure&#x20;4A</xref>). The finding in experiment II that 5&#xa0;min of loading was adequate to saturate much of the gene expression response was dependent on the state of maturity of the tissues (<xref ref-type="fig" rid="F5">Figure&#x20;5</xref>). A longer course of loading than 5&#xa0;min could be required for a more mature tissue that had undergone less stress relaxation by this time point; thus, to determine the appropriate loading incident duration for a different tissue the stress relaxation profile needs to first be assessed. Finally, experiment III had two main limitations. First, the medium was not changed during the whole 3-weeks culture period (though it was initially supplied in 5&#xd7; excess and there was no colour change to indicate an accumulation of cell metabolites). It is possible that the growth factors degraded during this time, resulting in a tendency for mechanical properties to plateau (<xref ref-type="fig" rid="F7">Figure&#x20;7</xref>). Second, the static control groups were free swelling due to the limited number of bioreactors available; it would have been ideal to have 0, 30, and 40% static compression controls within replicate bioreactors. These would have accounted for the reduced exposed surface area in HYP/DC, which likely contributed to the outcome of reduced matrix staining in HYP/DC compared to the free-swelling controls.</p>
<p>A priority in future work would be to address the matrix-poor core regions by increasing the local density of viable ECM-forming cells. Possibilities include using a gentle DC regime to promote media supply to the inner regions, forced perfusion during the pre-culture phase, or constructs incorporating medium channels (<xref ref-type="bibr" rid="B48">Timmins et&#x20;al., 2007</xref>; <xref ref-type="bibr" rid="B41">Schulz et&#x20;al., 2008</xref>; <xref ref-type="bibr" rid="B10">Daly et&#x20;al., 2018</xref>). As well, the suppression of hypertrophic markers in combined HYP/DC suggests mechano-hypoxia conditioning may have utility in engineering inner meniscus and articular cartilage with MSCs. These have some superior functional matrix-forming capabilities to MFCs but with higher native expression of constituents such as type X collagen that are undesirable for engineering cartilaginous tissues (<xref ref-type="bibr" rid="B13">Elkhenany et&#x20;al., 2020</xref>). The bioreactor in experiment III required little user input during the culture period, which is practical for long-term investigations of mechanical loading that are usually labour intensive. Mechano-hypoxia conditioning with a similar bioreactor could also be employed towards building a functional meniscus. The timing of the treatment could be delayed until an organized and appropriately mature matrix of collagen fibres was formed within a biomimetic meniscus shape, potentially using boundary conditions and cell contraction or polymer fibres with a compression or tension-loading component to guide fibre formation (<xref ref-type="bibr" rid="B8">Ballyns and Bonassar, 2011</xref>; <xref ref-type="bibr" rid="B36">Puetzer and Bonassar, 2016</xref>; <xref ref-type="bibr" rid="B37">Puetzer et&#x20;al., 2021</xref>). Then, mechano-hypoxia conditioning could be initiated to promote mechanical property development and fibrocartilage maturation in the inner regions, mimicking an aspect of human meniscus development.</p>
<p>In conclusion, mechano-hypoxia conditioning is promising for meniscus tissue engineering as it may support fibrocartilage formation and compressive property development. However, further research is required to achieve continual development of mechanical properties towards native levels and to incorporating a native meniscus-like collagen architecture.</p>
</sec>
</body>
<back>
<sec id="s5">
<title>Data Availability Statement</title>
<p>The RNA-seq dataset can be found in the online repository below: <ext-link ext-link-type="uri" xlink:href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?accGSE180467">https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc&#x3d;GSE180467</ext-link>. The remaining quantitative data is available in the Supplementary Materials section.</p>
</sec>
<sec id="s6">
<title>Author Contributions</title>
<p>AS, DL, and AA designed and performed studies with assistance from MK and AM-S. AS, DL, MS, ZM, MK, and AA performed data collection and analysis. AS wrote and reviewed the manuscript with assistance from DL and all other co-authors. SA, LW, NJ, and AA supervised the study. AA obtained research grant funding.</p>
</sec>
<sec id="s7">
<title>Funding</title>
<p>The authors disclose receipt of the following financial support for the research, authorship, and/or publication of this article: AS: Alexander Graham Bell Scholarship Program (NSERC); Dean&#x2019;s Doctoral Award (Faculty of Medicine and Dentistry, University of Alberta); Queen Elizabeth II Scholarship program (Alberta government). DL: NSERC Undergraduate Student Research Awards. MS: NSERC Undergraduate Student Research Award; Department of Surgery Summer Studentship (University of Alberta). ZM: NSERC (NSERC RGPIN-2018&#x2013;06290 Adesida). MK: Alberta Cancer Foundation-Mickleborough Interfacial Biosciences Research Program (ACFMIBRP 27128 Adesida). AM-S: Canadian Institutes of Health Research (CIHR MOP 125921 Adesida). SA, LW, NJ, AA: University of Alberta. Research Grant funding for the work was provided by NSERC (NSERC RGPIN-2018&#x2013;06290 Adesida); the Canadian Institutes of Health Research (CIHR) (CIHR MOP 125921 Adesida); the Canada Foundation for Innovation (CFI 33786); University Hospital of Alberta Foundation (UHF; RES0028185; RES0045921 Adesida); the Edmonton Orthopaedic Research Committee; the Cliff Lede Family Charitable Foundation (RES00045921 Adesida); the Edmonton Civic Employees Charitable Assistance Fund (RES0036207 Adesida); and the Alberta Cancer Foundation-Mickleborough Interfacial Biosciences Research Program (ACF-MIBRP 27128 Adesida).</p>
</sec>
<sec sec-type="COI-statement" id="s8">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s9" sec-type="disclaimer">
<title>Publisher&#x2019;s Note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<ack>
<p>The authors gratefully acknowledge the in-kind donation of the type I collagen scaffold by Integra Lifesciences (United&#x20;States).</p>
</ack>
<sec id="s10">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/fbioe.2021.739438/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/fbioe.2021.739438/full&#x23;supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Table1.docx" id="SM1" mimetype="application/docx" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="DataSheet1.docx" id="SM2" mimetype="application/docx" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="DataSheet2.xlsx" id="SM3" mimetype="application/xlsx" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
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