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<article article-type="review-article" dtd-version="2.3" xml:lang="EN" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">
<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Astron. Space Sci.</journal-id>
<journal-title>Frontiers in Astronomy and Space Sciences</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Astron. Space Sci.</abbrev-journal-title>
<issn pub-type="epub">2296-987X</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1091777</article-id>
<article-id pub-id-type="doi">10.3389/fspas.2023.1091777</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Astronomy and Space Sciences</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Seismology of active regions: Current status and perspectives</article-title>
<alt-title alt-title-type="left-running-head">Tripathy</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/fspas.2023.1091777">10.3389/fspas.2023.1091777</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Tripathy</surname>
<given-names>Sushanta</given-names>
</name>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2087977/overview"/>
</contrib>
</contrib-group>
<aff>
<institution>National Solar Observatory</institution>, <addr-line>Boulder</addr-line>, <addr-line>CO</addr-line>, <country>United States</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/165603/overview">Scott William McIntosh</ext-link>, National Center for Atmospheric Research (UCAR), United States</p>
</fn>
<fn fn-type="edited-by">
<p>
<bold>Reviewed by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/115770/overview">Debi Prasad Choudhary</ext-link>, California State University, Northridge, United States</p>
<p>
<ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/2202535/overview">Matthias Waidele</ext-link>, Stanford University, United States</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: S. C. Tripathy, <email>stripathy@nso.edu</email>
</corresp>
<fn fn-type="other">
<p>This article was submitted to Stellar and Solar Physics, a section of the journal Frontiers in Astronomy and Space Sciences</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>20</day>
<month>03</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>10</volume>
<elocation-id>1091777</elocation-id>
<history>
<date date-type="received">
<day>07</day>
<month>11</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>07</day>
<month>03</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Tripathy.</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Tripathy</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The goal of helioseismology is to provide accurate information about the Sun&#x2019;s interior from the observations of the wave field at its surface. In the last three decades, both global and local helioseismology studies have made significant advances and breakthroughs in solar physics. However, 3-d mapping of the structure and dynamics of sunspots and active regions below the surface has been a challenging task and is among the long standing and intriguing puzzles in solar physics due to the complexity of the turbulent and dynamic nature of magnetized regions. In this review, I present some of the recent results relevant for helioseismology of sunspots and active regions obtained from high resolution observations, forward modeling and numerical simulations.</p>
</abstract>
<kwd-group>
<kwd>Sun</kwd>
<kwd>helioseismology</kwd>
<kwd>active regions</kwd>
<kwd>sunspots</kwd>
<kwd>magnetic field</kwd>
<kwd>waves</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>1 Introduction</title>
<p>Magnetic fields on the Sun exist in various forms and exhibit a large variety of phenomena. Its key elements are sunspots and active regions (ARs) which control most of the solar dynamics and evolution. Although the formation and stability of sunspots are one of the richest subjects of study in solar physics, the topology of the magnetic field above and beneath the Sun&#x2019;s surface is poorly understood. In particular, knowledge of the magnetic field in the interior presents theoretical and observational challenges since direct measurements are not possible. The only way it could be probed is through the framework of helioseismology which analyzes the acoustic waves of the Sun. Prior to the development of local helioseismic techniques, the dynamics and structure of sunspots were studied from high-resolution observations of the solar surface. Local helioseismic techniques such as time-distance (TD; <xref ref-type="bibr" rid="B22">Duvall&#xa0;et&#xa0;al., 1993</xref>), helioseismic holography (HH; <xref ref-type="bibr" rid="B48">Lindsey and Braun, 1997</xref>) and ring-diagram (RD; <xref ref-type="bibr" rid="B32">Hill, 1988</xref>) have presented new opportunities to probe the subsurface structure and dynamics of sunspots and active regions (for previous reviews see <xref ref-type="bibr" rid="B27">Gizon and Birch, 2005</xref>; <xref ref-type="bibr" rid="B46">Kosovichev, 2012</xref>).</p>
<p>Despite the abundance of clues from observations at the solar surface and application of these helioseismic techniques, theories about formation, subsurface structure, thermal properties and topology of active regions are still being debated. As demonstrated by <xref ref-type="bibr" rid="B29">Gizon&#xa0;et&#xa0;al., 2009</xref>, <xref ref-type="bibr" rid="B28">Gizon&#xa0;et&#xa0;al., 2010</xref>), wave speed perturbations beneath the sunspot in Active Region 9787 obtained from time-distance inversions are different from ring-diagram inversions and disagree with the results from semi-empirical models or radiative magnetohydrodynamic (MHD) simulations. <xref ref-type="bibr" rid="B49">Moradi&#xa0;et&#xa0;al. (2010)</xref> reanalyzed this active region and the result is presented in <xref ref-type="fig" rid="F1">Figure&#xa0;1</xref> which shows the wave speed perturbations from different models as well as the wave-speed inversions from both ring-diagram analysis and time-distance helioseismology. As evident, three out of four curves shown in <xref ref-type="fig" rid="F1">Figure&#xa0;1</xref> are consistent with a strong, positive wave-speed perturbation extending about 2&#x2013;3&#xa0;Mm below the surface. Below this depth, the helioseismic inversions showconsiderably stronger deep wave-speed perturbations than the other methods. This is commonly referred to as the two-layer structure with a negative variation of the sound speed in a shallow subsurface layer and a positive variation in the deep interior. However, the two local helioseismic inversions give subsurface wave-speed profiles with opposite signs and different amplitudes. Although the papers cited above discuss a number of factors which could contribute to such a disagreement; <xref ref-type="bibr" rid="B49">Moradi&#xa0;et&#xa0;al. (2010)</xref> recommend that the structure of the sunspot in AR 9787 is probably associated with a shallow, positive wave-speed perturbation instead of the two-layer model. It is also plausible that the helioseismic inversions for sound speed beneath the sunspots are contaminated by surface effects associated with the sunspot magnetic field (<xref ref-type="bibr" rid="B18">Couvidat and Rajaguru, 2007</xref>). In order to further understand the discrepancy, <xref ref-type="bibr" rid="B46">Kosovichev (2012)</xref> combined the sound speed differences that have been previously inferred by various authors and the results are shown in <xref ref-type="fig" rid="F2">Figure&#xa0;2</xref>. It is clearly seen that the sound speed differences between different helioseismic techniques provide better qualitative agreement; an enhancement in the deep interior (2&#x2013;10&#xa0;Mm) and a decrease in the subsurface layers, i.e., a two layer model. The TD results show a shallow negative variation while the acoustic imaging inversion lacks it. The results of RD inversions show the structure qualitatively similar to the TD results but the negative variation is spread deeper than in the TD profiles. A similar result was also reported by <xref ref-type="bibr" rid="B1">Baldner&#xa0;et&#xa0;al. (2009)</xref>. For comparison, the figure also shows the sound speed perturbation published by (<xref ref-type="bibr" rid="B29">Gizon&#xa0;et&#xa0;al. 2009</xref>; <xref ref-type="bibr" rid="B28">Gizon&#xa0;et&#xa0;al. 2010</xref>) using the ring-diagram analysis and as discussed previously, the behaviour is remarkably different from other curves obtained by the same technique.</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Comparison of different helioseismic methods used to infer wave-speed perturbations below the sunspot in Active Region 9787. The red and blue curves show the ring-diagram and phase-speed filtered time-distance results, respectively, as displayed in <xref ref-type="bibr" rid="B29">Gizon&#xa0;et&#xa0;al. (2009</xref>, <xref ref-type="bibr" rid="B28">2010)</xref>. The time&#x2014;distance result is shown along the axis of the sunspot; the ring-diagram results have been scaled by a factor of ten. The black curve indicates the fast-mode speed perturbation from the radiative MHD simulations of <xref ref-type="bibr" rid="B58">Rempel&#xa0;et&#xa0;al. (2009b)</xref>. The green line represents the on-axis wave-speed perturbations deduced from the phenomenological model of <xref ref-type="bibr" rid="B24">Fan&#xa0;et&#xa0;al. (1995)</xref>. Figure from <xref ref-type="bibr" rid="B49">Moradi&#xa0;et&#xa0;al. (2010)</xref>.</p>
</caption>
<graphic xlink:href="fspas-10-1091777-g001.tif"/>
</fig>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Sound speed beneath various sunspots obtained by different local helioseismology methods: <bold>(A)</bold> solid, dashed, and dot-dashed curves are obtained by using time-distance helioseismology technique (<xref ref-type="bibr" rid="B16">Couvidat&#xa0;et&#xa0;al., 2006</xref>), the dotted curve is derived by applying the technique of acoustic imaging (<xref ref-type="bibr" rid="B63">Sun&#xa0;et&#xa0;al., 2002</xref>); <bold>(B)</bold> solid and dashed curves are from <xref ref-type="bibr" rid="B3">Bogart&#xa0;et&#xa0;al. (2008)</xref> and dot-dashed curve is from <xref ref-type="bibr" rid="B29">Gizon&#xa0;et&#xa0;al. (2009)</xref>; both the curves are derived through the ring-diagram method. Figure from <xref ref-type="bibr" rid="B46">Kosovichev (2012)</xref>.</p>
</caption>
<graphic xlink:href="fspas-10-1091777-g002.tif"/>
</fig>
<p>In addition, there are several other observed phenomena associated with active regions that are yet to be fully understood in terms of coherent physical mechanisms. For example, power absorption in sunspots and enhanced acoustic power surrounding active regions, known as acoustic halos and acoustic glories are yet to be fully explained. It has also been noticed that when a sunspot is located near the limb, the phase shift of the acoustic waves vary in a sunspot penumbra relative to the direction of the disk center. This effect termed as &#x201c;Shower-glass&#x201d; effect was first reported by <xref ref-type="bibr" rid="B60">Schunker&#xa0;et&#xa0;al. (2005)</xref> and later confirmed by <xref ref-type="bibr" rid="B68">Zhao and Kosovichev (2006)</xref> and is believed to be produced by surface phase perturbations. Certainly, an understanding of these phenomena are important for the development of realistic sunspot models.</p>
<p>The primary reasons for the failure of local helioseismic techniques to interpret the surface features and internal properties below the sunspots and active regions arise from the lack of understanding the complex interaction between solar oscillations and the magnetic field. Recent forward modeling (<xref ref-type="bibr" rid="B14">Cally, 2007</xref>) and numerical simulations (<xref ref-type="bibr" rid="B13">Cally and Moradi, 2013</xref>, and references therein) suggest that active regions open a window from the interior into the solar atmosphere and that the seismic waves leak through this window. Multi-spectral helioseismic observations with the Magneto-Optical filters at Two Heights (MOTH) instrument which was operated in Antarctica for a limited time indicated the existence of &#x201c;magnetic portals&#x201d; through which acoustic energy could leak into the chromosphere (<xref ref-type="bibr" rid="B42">Jefferies&#xa0;et&#xa0;al., 2006</xref>). These leaked acoustic waves, under certain conditions, are converted into additional fast and slow magneto-acoustic waves. The converted fast wave continues upwards to be reflected where its horizontal phase speed matches the local Alfv&#xe9;n speed. After it reflects, the fast wave re-enter the interior to rejoin the confined seismic wave field altering the original acoustic signal with signatures of the atmosphere. Additionally the fast wave may partially mode convert to upward and downward propagating Alfv&#xe9;n waves, depending on the magnetic field inclination relative to the wave vector (see <xref ref-type="fig" rid="F1">Figure&#xa0;1</xref> of <xref ref-type="bibr" rid="B43">Khomenko and Cally, 2012</xref>), thereby removing energy from the seismic field and potentially altering its phase. Thus, further advancements in helioseismic inferences below the active region require a precise understanding of interaction between the acoustic waves and the strong inclined magnetic field as a function of height in the solar atmosphere in addition to improvement in helioseismic techniques. In this review, I briefly highlight some of the recent progress achieved in our understanding of the acoustic modes in the presence of magnetic field as well as future directions.</p>
</sec>
<sec id="s2">
<title>2 Power absorption and acoustic emissions</title>
<p>There is considerable observational evidence that sunspots have large effects on the amplitude of solar p-modes as measured by Doppler velocity. Measuring the power of an annular region surrounding a sunspot <xref ref-type="bibr" rid="B6">Braun&#xa0;et&#xa0;al. (1987)</xref> found that sunspots absorb up to 50% of the incoming acoustic power and shift the phase of incoming waves (<xref ref-type="bibr" rid="B7">Braun&#xa0;et&#xa0;al., 1988</xref>, <xref ref-type="bibr" rid="B8">1992</xref>). The study used Hankel decomposition where the incoming wave power is analyzed in terms of the incoming and outgoing waves (for details see <xref ref-type="bibr" rid="B27">Gizon and Birch, 2005</xref>). Later studies found that the suppression is frequency and radial order dependent (<xref ref-type="bibr" rid="B10">Brown&#xa0;et&#xa0;al., 1992</xref>). These phenomena have also been studied with other techniques, e.g., acoustic holography (<xref ref-type="bibr" rid="B15">Chang&#xa0;et&#xa0;al., 1997</xref>), ring-diagrams (<xref ref-type="bibr" rid="B55">Rajaguru&#xa0;et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B36">Howe&#xa0;et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B39">Jain&#xa0;et&#xa0;al., 2008</xref>) and time-distance methodology (<xref ref-type="bibr" rid="B37">Ilonidis and Zhao, 2011</xref>). Several possible mechanisms exist that may explain the observed suppression but the most favorable one is the partial conversion of the incoming waves into slow magnetoacoustic waves that propagate downward, channelled by the magnetic field (<xref ref-type="bibr" rid="B11">Cally&#xa0;et&#xa0;al., 2003</xref>, and references therein).</p>
<p>Another observational phenomena associated with active regions are the existence of acoustic halos which are manifested as power enhancements around active regions (<xref ref-type="fig" rid="F3">Figure&#xa0;3</xref>). The acoustic halos were first observed in Dopplergrams at frequencies between 5.5 and 7.5&#xa0;mHz which is higher than the cutoff frequency (<xref ref-type="bibr" rid="B10">Brown&#xa0;et&#xa0;al., 1992</xref>). These regions with excess power are characterized by a patchy structure at spatial scales of a few arcseconds having substantial magnetic field strength. These enhanced emissions were subsequently confirmed extending up to chromospheric heights (<xref ref-type="bibr" rid="B8">Braun&#xa0;et&#xa0;al., 1992</xref>; <xref ref-type="bibr" rid="B64">Toner and Labonte, 1993</xref>) but were absent in measurements of the continuum intensity (<xref ref-type="bibr" rid="B33">Hindman and Brown, 1998</xref>; <xref ref-type="bibr" rid="B41">Jain and Haber, 2002</xref>). With the availability of multi-height observations from Solar Dynamics Observatory (SDO; <xref ref-type="bibr" rid="B53">Pesnell&#xa0;et&#xa0;al., 2012</xref>), several studies showed the presence of intensity halos in different spectral lines but at higher heights (<xref ref-type="bibr" rid="B51">Moretti&#xa0;et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B61">Schunker and Braun, 2011</xref>; <xref ref-type="bibr" rid="B35">Howe&#xa0;et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B65">Tripathy&#xa0;et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B56">Rajaguru&#xa0;et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B67">Tripathy&#xa0;et&#xa0;al., 2018</xref>). <xref ref-type="fig" rid="F3">Figure&#xa0;3</xref> shows the power maps for AR 11092 in different frequency bands and at different heights of the solar atmosphere corresponding to different observables (<xref ref-type="bibr" rid="B65">Tripathy&#xa0;et&#xa0;al., 2012</xref>). The power in Helioseismic and Magnetic Imager (HMI) Doppler (<italic>V</italic>) observations beyond 5&#xa0;mHz is found to be enhanced in a narrow zone seen as a ring around the sunspot. As reported earlier no halos were seen in the HMI continuum intensity observations. In case of HMI line core (L<sub>
<italic>c</italic>
</sub>, difference between <italic>I</italic>
<sub>
<italic>c</italic>
</sub> and line depth) and the Atmospheric Imaging Assembly (AIA) 1600&#xa0;&#xc5; and 1700&#xa0;&#xc5; bands, both power suppression and halos can be seen in the extended region around the sunspot. The studies mentioned earlier revealed new features, e.g., presence of halos up to 10&#xa0;mHz and are found to be strong functions of magnetic field and their inclination angle. Numerous theories have been suggested as possible mechanisms for the halo phenomenon. <xref ref-type="bibr" rid="B47">Kuridze&#xa0;et&#xa0;al. (2008)</xref> proposed that high-order azimuthal modes may become trapped under field free magnetic canopy regions thus enhancing higher frequency wave power. By conducting radiative simulations, <xref ref-type="bibr" rid="B38">Jacoutot&#xa0;et&#xa0;al. (2008)</xref> showed that high-frequency turbulent convective motions, in the presence of moderate magnetic fields, may enhance the local acoustic emission. <xref ref-type="bibr" rid="B30">Hanasoge (2009)</xref> further advocated that the halo is a consequence of a MHD mode mixing due to scattering from the magnetic flux tube. On the other hand, <xref ref-type="bibr" rid="B44">Khomenko and Collados (2009)</xref> suggested that the refraction of fast waves in the higher atmosphere could deposit additional energy into photospheric regions where the process of mode conversion describes the intrinsic physics. This study also put forward several potentially observable properties of halos, derived from their model of fast magneto-acoustic wave refraction.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Two-dimensional power maps of AR 11092 on 2010 August 3. The vertical columns from left to right represents power in 3&#x2013;8&#xa0;mHz in 1-mhz bands. The rows from top to bottom represent HMI continuum intensity (<italic>I</italic>
<sub>
<italic>c</italic>
</sub>), HMI Doppler (<italic>V</italic>), HMI line core (L<sub>
<italic>c</italic>
</sub>), AIA 1700&#xa0;&#xc5; and AIA 1600&#xa0;&#xc5; respectively, i.e., in order of the increasing height from about 20 to 450&#xa0;km. The <italic>x</italic>-axis and <italic>y</italic>-axis in each panel represents longitude and latitude, respectively. Figure from <xref ref-type="bibr" rid="B65">Tripathy&#xa0;et&#xa0;al. (2012)</xref>.</p>
</caption>
<graphic xlink:href="fspas-10-1091777-g003.tif"/>
</fig>
<p>Recent numerical simulations of <xref ref-type="bibr" rid="B59">Rijs&#xa0;et&#xa0;al. (2016)</xref> provided further evidence that the halo is solely produced by the return of the reflected fast magneto-acoustic waves. In this simulation, the high-chromosphere Alfv&#xe9;n speed was artificially limited thereby preventing fast wave reflection. As illustrated in <xref ref-type="fig" rid="F4">Figure&#xa0;4</xref>, the halos were reduced for smaller Alfv&#xe9;n velocity and was completely suppressed when the velocity was about 12&#xa0;km/s, dramatically illustrating that the atmosphere can indeed shape the observed surface seismology. However, why these reflected fast waves are at a higher frequency than the cutoff frequency is still unclear. Also, the power enhancements above the cutoff frequency around the active regions are accompanied by power suppression below the cutoff frequency within the same active regions (<xref ref-type="bibr" rid="B41">Jain and Haber, 2002</xref>) and the magnitude of such power suppression increases with height just above the surface (<xref ref-type="bibr" rid="B40">Jain&#xa0;et&#xa0;al., 2014</xref>). The variation of acoustic power in active regions may have significant effects on inferences of subsurface flows, because the suppression of acoustic sources in magnetized regions causes anisotropy in wave propagation properties. Recent preliminary studies also indicate that power halos seen in different active regions behave differently (<xref ref-type="bibr" rid="B66">Tripathy&#xa0;et&#xa0;al., 2020</xref>). This warrants a statistical analysis of many active regions as a function of height along with vector magnetic field measurements since both strength and inclination angle of the magnetic field plays major role in the formation of acoustic halos.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Signature of power halos for different Alfv&#xe9;n velocity seen in numerical simulation of <xref ref-type="bibr" rid="B59">Rijs&#xa0;et&#xa0;al. (2016)</xref>. Note that in this simulation the maximum value of Alfv&#xe9;n speed limiter (a<sub>lim</sub>) as described in <xref ref-type="bibr" rid="B58">Rempel&#xa0;et&#xa0;al. (2009b)</xref> is set at 90&#xa0;km/s (panel a) which yields a time step of around 0.2&#xa0;s in the simulation. Panels (b-d) shows the same power halos with progressively lower values of a<sub>lim</sub>. As the Alfv&#xe9;n velocity is reduced, the halos disappear since it limits the space for fast waves to return. Figure from <xref ref-type="bibr" rid="B59">Rijs&#xa0;et&#xa0;al. (2016)</xref> and is reproduced by permission of the AAS.</p>
</caption>
<graphic xlink:href="fspas-10-1091777-g004.tif"/>
</fig>
<p>In addition to the acoustic halos, active regions also show enhanced high-frequency acoustic emission in egression power maps when the active region is analyzed using the technique of helioseismic holography (<xref ref-type="bibr" rid="B9">Braun and Lindsey, 1999</xref>) or Hankel-Fourier analysis (<xref ref-type="bibr" rid="B17">Couvidat, 2013</xref>). Since these appear as discrete regions of sustained acoustic power within the emission halos, these are known as acoustic glories. Since both acoustic halos and glories are associated with enhanced emissions, it is important to make a distinction between these two phenomena. <xref ref-type="bibr" rid="B20">Donea&#xa0;et&#xa0;al. (2000)</xref> pointed out that the localized enhancement of the surface disturbance that registers the arrival of an underlying wave generally gives rise to the acoustic power halos while the enhanced seismic emission that characterizes acoustic glories are largely comprised of small, discrete seismic emitters that tend to cluster in strings in low-magnetic field regions (<xref ref-type="bibr" rid="B21">Donea and Newington, 2011</xref>). A comparison of traditional halo maps with emission maps generated using holography indicate that the two maps have similar properties with respect to the magnetic field but lack spatial correlation when the highest-power regions are examined (<xref ref-type="bibr" rid="B31">Hanson&#xa0;et&#xa0;al., 2015</xref>). It may also be noted that isolated sunspots do not normally show acoustic glories. The most promising mechanisms to explain these phenomena are interaction of waves with the horizontal field of a canopy structure (<xref ref-type="bibr" rid="B52">Muglach&#xa0;et&#xa0;al., 2005</xref>), mode conversion (<xref ref-type="bibr" rid="B44">Khomenko and Collados, 2009</xref>) and the trapping of waves under the canopy (<xref ref-type="bibr" rid="B47">Kuridze&#xa0;et&#xa0;al., 2008</xref>). Once again this is not a well understood phenomena and requires further observational studies and numerical simulations to comprehend the nature of the wave interaction in the presence of magnetic field.</p>
</sec>
<sec id="s3">
<title>3 Wave propagation in magnetized regions</title>
<p>In order to comprehend the seismic signal and associated phenomena observed on the surface of the Sun, it is critical to model the propagation of acoustic waves through a magnetized region. However from a theoretical point of view, the influence of magnetic fields on incident acoustic waves is a complex phenomenon. Although there is insufficient understanding of the processes involved, rapid progress is being made due to the synergy between numerical simulations and multi-height observations. Considering a simplified simulation of wave propagation (<xref ref-type="fig" rid="F5">Figure&#xa0;5</xref>) in which a helioseismic ray from below approached a magnetized region, <xref ref-type="bibr" rid="B14">Cally (2007)</xref> inferred that in the presence of strong magnetic field the acoustic waves split into fast and slow magnetoacoustic waves near the <italic>a</italic> &#x3d; <italic>c</italic> equipartition depth and shortens the skip time of fast rays by up to several minutes. Under certain conditions, the fast waves are reflected back to the interior and in this process, it is believed that the phase of the acoustic waves (corresponding to travel times) is altered (<xref ref-type="bibr" rid="B13">Cally and Moradi, 2013</xref>). Further it has been demonstrated that scattering and mode mixing by the magnetic field causes modifications to the acoustic wave field (<xref ref-type="bibr" rid="B34">Hindman and Jain, 2012</xref>) which manifest as a redistribution of power between different acoustic waves in the vicinity of a magnetized region. Thus, the separation of scattered and reflected waves from different heights is also important for understanding the inhomogeneity in magnetic field regions above the surface. In the next section, we will discuss some of the recent progress made in this field especially in the field of numerical simulations of wave propagation in magnetized plasma to provide better insight of the wave interaction with the magnetic field.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Schematic diagram illustrating the propagation of a wave with wave vector <italic>k</italic> approaching a magnetic region from below. Here <italic>c</italic> is the sound speed, <italic>a</italic> is the Alfv&#xe9;n velocity, &#x3b8; is the field inclination from the vertical, <italic>&#x3b1;</italic>, the attack angle, is the angle between <italic>k</italic> and magnetic field <italic>B</italic>, <italic>h</italic>
<sub>
<italic>s</italic>
</sub> is the thickness of the <italic>a</italic> &#x2248; <italic>c</italic> layer. Figure from <xref ref-type="bibr" rid="B14">Cally (2007)</xref>.</p>
</caption>
<graphic xlink:href="fspas-10-1091777-g005.tif"/>
</fig>
<sec id="s3-1">
<title>3.1 Forward modeling and numerical simulations</title>
<p>The generation of artificial data through numerical modeling and its analysis through various local helioseismic techniques have highlighted the issues associated with wave propagation in strong magnetized regions. For example, <xref ref-type="bibr" rid="B4">Braun&#xa0;et&#xa0;al. (2012)</xref> compared helioseismic travel-time shifts measured from a realistic magnetoconvective sunspot simulation and observed sunspots. The numerical sunspot model used were based on the methods described in <xref ref-type="bibr" rid="B57">Rempel&#xa0;et&#xa0;al. (2009a</xref>,<xref ref-type="bibr" rid="B58">b)</xref> while the mature spots were selected from the active regions AR10615 and AR11092. The travel time maps were measured following the general procedures for surface-focused helioseismic holography (<xref ref-type="bibr" rid="B5">Braun and Birch, 2008</xref>) and time-distance methods. The study found similarities in the travel-time shifts measured by both the techniques for the simulated sunspots. <xref ref-type="fig" rid="F6">Figure&#xa0;6</xref> shows quantitative comparisons of the average travel-time shifts over the umbra between the HH measurements made for the simulated sunspot and the two observed ones for four different phase speed filters TD1 through TD4 corresponding to the mean annulus radius of 6.2, 8.7, 11.6, and 16.95&#xa0;Mm, respectively (the phase speed increases from 12.8 to 24.8&#xa0;km/s). It is evident that there is remarkable agreement for most of the filter combinations below 4.5&#xa0;mHz but significant differences above it and mostly for the phase-speed filters TD1 and TD4 which represent lowest and highest phase speeds. In the center of the sunspots, the travel-time shifts of the real sunspots is found to be positive (longer travel times) while the corresponding shifts in the simulated spot are negative (shorter travel times). It should also be noted that there were significant differences between the two real sunspots for some phase-speed filter and frequency combinations once again emphasizing the need for statistical analysis of many active regions with different magnetic and topological characteristics.</p>
<fig id="F6" position="float">
<label>FIGURE 6</label>
<caption>
<p>Averages of the mean travel-time shifts over the umbra of the sunspot in the magnetoconvective simulation (solid lines) and AR11092 (dotted line) and AR10615 (dashed line) as a function of the central frequency of the bandpass filter measured through the technique of helioseismic holography. The error bars represent the total spread in values. The <bold>(A&#x2013;D)</bold> show the results for four different phase-speed filters TD1-TD4. Figure from <xref ref-type="bibr" rid="B4">Braun&#xa0;et&#xa0;al. (2012)</xref> and is reproduced by permission of the AAS.</p>
</caption>
<graphic xlink:href="fspas-10-1091777-g006.tif"/>
</fig>
<p>In order to comprehend the role of the magnetic field in the seismology of the active regions through wave propagation and conversion, <xref ref-type="bibr" rid="B13">Cally and Moradi (2013)</xref> introduced a directionally filtered TD approach sensitive to magnetic field orientation to simulated data in a simple translationally invariant atmosphere. The study found substantial wave travel time discrepancies of several tens of seconds depending on the field strength, frequency and wave number (for example, 40&#xa0;s in 1&#xa0;KG magnetic field) and indicated that processes occurring in higher up in the atmosphere strongly influence the signal used in helioseismic studies. The approach was further extended to include a realistic sunspot model atmosphere spanning the sub-photosphere to the chromosphere to analyze the sensitivity of directional helioseismology measurements to changes in the photospheric and subsurface structure of sunspot models (<xref ref-type="bibr" rid="B50">Moradi&#xa0;et&#xa0;al., 2015</xref>). <xref ref-type="fig" rid="F7">Figure&#xa0;7</xref> shows contour plots of time-distance phase travel-time perturbations (<italic>&#x3b4;&#x3c4;</italic>) with respect to the quiet Sun model as a function of field inclination from vertical (<italic>&#x3b8;</italic>) and azimuthal angle (<italic>&#x3d5;</italic>) for different wave travel distances from the source (&#x394;) derived from sunspot models with surface field strength of 1.5&#xa0;KG. The left and right column shows the results for 3 and 5&#xa0;mHz frequency bands, respectively. The figure clearly shows manifestations of the acoustic cutoff at <italic>&#x3b8;</italic> &#x3d; 30&#xb0;&#x2013;40&#xb0; for 5&#xa0;mHz and <italic>&#x3b8;</italic> &#x3d; 50&#xb0;&#x2013;60&#xb0; at 3&#xa0;mHz. Below these inclinations, <italic>&#x3b4;&#x3c4;</italic> is small and typically positive. At larger inclinations, negative travel time shifts are seen (slower travel time, faster speed) which are interpreted as manifestation of the wave properties. At larger field inclinations, the atmosphere is open to wave propagation and mode conversion. This results in negative <italic>&#x3b4;&#x3c4;</italic> for these <italic>&#x3b8;</italic> and particularly at small <italic>&#x3d5;</italic> (around 0&#xb0; and 180&#xb0;), the fast magnetically dominated waves emerging from the layer where sound speed equals the Alfv&#xe9;n velocity return to the surface after reflection near the cutoff frequency with a different phase compared to that of the simply reflecting acoustic waves in the quiet Sun. However, away from <italic>&#x3d5;</italic> &#x3d; 0&#xb0; or 180&#xb0;, the fast waves lose energy as they are partially converted to the Alfv&#xe9;n waves, and further suffer a phase retardation that may be interpreted as partially cancelling the underlying negative travel time perturbation. Overall, these results illustrate that the seismic waves that leak through the active regions can directly affect the wave travel times that form the basis to infer the subsurface structure and dynamics below active regions.</p>
<fig id="F7" position="float">
<label>FIGURE 7</label>
<caption>
<p>Phase travel-time perturbations derived from the 1.5&#xa0;KG sunspot model simulation as a function of field inclination (<italic>&#x3b8;</italic>) from the vertical, and azimuthal angle (<italic>&#x3d5;</italic>) for wave travel distances of &#x394; &#x3d; 6.2 <bold>(A,B)</bold>, 8.7 <bold>(C,D)</bold> and 11.6&#xa0;Mm <bold>(E,F)</bold>. Left hand column represent 3&#xa0;mHz and right-hand column 5&#xa0;mHz band. Figure from <xref ref-type="bibr" rid="B50">Moradi&#xa0;et&#xa0;al. (2015)</xref>.</p>
</caption>
<graphic xlink:href="fspas-10-1091777-g007.tif"/>
</fig>
<p>Several different numerical simulations of wave propagation through magneto-hydrostatic (MHS) sunspot models were carried out by <xref ref-type="bibr" rid="B26">Felipe&#xa0;et&#xa0;al. (2016)</xref> to assess the contributions of thermal and magnetic effects. In the thermal only simulation, the atmospheric model&#x2019;s magnetic field was set to zero while in the magnetic only sunspot simulation, the thermal variation was neglected but the direct effect of the magnetic field was included. In addition a full simulation retaining both the effects were also carried out. The measured mean travel time (average of the incoming and outgoing travel time shifts relative to the quiet Sun) for all three simulations in different frequency bands and phase speed filters are shown in <xref ref-type="fig" rid="F8">Figure&#xa0;8</xref>. Travel-time shifts for the full simulation ranges between &#x2212;20 and &#x2212;30&#xa0;s for most of the combinations of phase speed and frequency filters that present a negative travel-time which are similar but smaller in magnitude than those found in realistic magnetoconvective simulations (<xref ref-type="bibr" rid="B4">Braun&#xa0;et&#xa0;al., 2012</xref>). It is conjectured that the difference could be due to the different properties of the sunspot model used in those studies. It is further evident that in some ranges of horizontal phase speed and frequency, there is agreement between the travel times measured in the full model and the thermal model but major disagreement with the magnetic model which shows mostly positive travel time-shifts. Since the fast magnetoacoustic waves propagates faster in the regions where the Alfv&#xe9;n speed is higher, one expected shorter travel times or negative shifts in the magnetic only simulation. This result is consistent with <xref ref-type="bibr" rid="B12">Cally (2009)</xref> who evaluated the travel-time perturbation produced by an uniform magnetic field added to the model of the quiet Sun. Thus, it appears that the travel time-shifts which is related to the phase changes could have been caused by the interaction of the waves with the magnetic field through variety of processes, e.g., mode conversion, transmission or reflection of the fast waves. (<xref ref-type="bibr" rid="B26">Felipe&#xa0;et&#xa0;al., 2016</xref>) also used the ray approximation to show that the travel-time shifts in the thermal sunspot model are primarily produced by the changes in the wave path due to the Wilson depression rather than the variations in the wave speed suggesting that inversions for the subsurface structure of sunspots must account for local changes in the density. These results were subsequently confirmed by performing a parametric study of the sensitivity of the travel-time shifts measured from sunspot models with different Wilson depression and magnetic field strengths (<xref ref-type="bibr" rid="B25">Felipe&#xa0;et&#xa0;al., 2017</xref>). This study further confirmed the frequency-dependent directional behavior, consistent with the signature of magneto-hydrodynamic mode conversion regardless of the sunspot field strength or depth of its Wilson depression. In a previous study, <xref ref-type="bibr" rid="B62">Schunker&#xa0;et&#xa0;al. (2013)</xref> had also explored the sensitivity of the travel times to Wilson depression and magnetic field and had concluded that the numerical modeling of MHD wave propagation is an essential tool for interpreting the effects of sunspots on seismic waveforms. Recently, <xref ref-type="bibr" rid="B23">Duvall&#xa0;et&#xa0;al. (2018)</xref> measured travel times for waves reflecting on the bottom side of an active region and compared this with theoretical calculations of travel times through a sunspot model and found that the travel times averaged over the umbra is significantly different from the quiet Sun. They also performed numerical experiments on the model sunspot of <xref ref-type="bibr" rid="B54">Przybylski&#xa0;et&#xa0;al. (2015)</xref> using standard magnetohydrodynamic ray theory to calculate the travel times and confirmed that the thermal rather than magnetic structure of the spot is responsible for the travel time delays.</p>
<fig id="F8" position="float">
<label>FIGURE 8</label>
<caption>
<p>Mean travel-time shifts measured from the full sunspot simulation (top left), thermal-only sunspot simulation (top right) and magnetic-only sunspot simulation (bottom) using phase speed and frequency bandpass filters. Columns correspond to the different phase speed filters used, with the name of the filter and its phase speed at the top of each figure. Each row shows a frequency filter, with the central frequency indicated at the left side. The frequency bandpass width is equal to 0.5&#xa0;mHz. Figure adapted from <xref ref-type="bibr" rid="B26">Felipe&#xa0;et&#xa0;al. (2016)</xref> and is reproduced by permission of the AAS.</p>
</caption>
<graphic xlink:href="fspas-10-1091777-g008.tif"/>
</fig>
<p>Since in TD inversions, travel time shifts are commonly represented as resulting from the changes in the local sound speed (<xref ref-type="bibr" rid="B45">Kosovichev&#xa0;et&#xa0;al., 1997</xref>), <xref ref-type="bibr" rid="B4">Braun&#xa0;et&#xa0;al. (2012)</xref> computed the travel times from the actual perturbation to the sound speed in the simulated sunspot. The study, however, found a major disagreement between the model and measured travel-time shifts. Since an earlier hare and hound analysis of simulated data containing only pure sound speed perturbation had shown remarkable agreement between the model and measured shifts (<xref ref-type="bibr" rid="B2">Birch&#xa0;et&#xa0;al., 2011</xref>), it is believed that the inclusion of the magnetic field in the sunspot simulation has caused the disagreement in the travel-time shifts. Thus, it is conjectured that the inversion methods which incorporate direct effects of the magnetic field (<xref ref-type="bibr" rid="B19">Crouch&#xa0;et&#xa0;al., 2011</xref>), including mode conversion are required to make further progress. Developing an inversion method which can account for the complicated influence of the strong magnetic fields on travel-time shifts remains a challenge for sunspot seismology. All these investigations clearly point to the importance of understanding the wave interactions in the immediate vicinity of strong and inclined magnetic field especially at the height where the magnetic field dominates the plasma motion.</p>
</sec>
</sec>
<sec id="s4">
<title>4 Future directions</title>
<p>Theory of linear propagation of the waves in strong and inclined magnetic field regions suggests that the incident fast acoustic wave from below the surface leaks into the higher atmosphere through the magnetized regions and under certain conditions these waves are converted into additional MHD waves. Numerical simulations of wave propagation in magnetized regions further demonstrate the mode conversion process and the implications of the returning fast and Alfv&#xe9;n waves for the seismology of the photosphere. However at the present time the critical missing data are simultaneous vector magnetic field and high-cadence, full disk Doppler observations at multiple heights. Such observations are crucial for improving the understanding of acoustic wave propagation in the presence of magnetic field and decoding the structure and dynamics of sunspot and active regions in the subsurface layers that are crucial to determine how and why the Sun varies. In addition, high spatial, spectral, and temporal resolution observations over small areas will also provide information on the unresolved small-scale processes that may be important. The required observations can be obtained from both ground-based and space-borne observatories. In addition, observing active regions from different angles (multi-vantage and polar observations) will also help to understand the coupling of different waves. From a theoretical point of view, the next big step in the interpretation of the helioseismic signals will be to perform and analyze wave propagation through full magneto-hydrodynamic instead of magneto-hydrostatic simulations.</p>
</sec>
</body>
<back>
<sec id="s5">
<title>Author contributions</title>
<p>The author (ST) planned and prepared the manuscript.</p>
</sec>
<sec id="s6">
<title>Funding</title>
<p>This work is partially funded by NASA grant 80NSSC22M0162 to Stanford University. This work is supported by the National Solar Observatory&#x2019;s Integrated Synoptic Program. The National Solar Observatory is the national center for ground-based solar physics in the United States and is operated by the Association of Universities for Research in Astronomy under a cooperative agreement with the National Science Foundation Division of Astronomical Sciences.</p>
</sec>
<ack>
<p>I thank the reviewers for their suggestions.</p>
</ack>
<sec sec-type="COI-statement" id="s7">
<title>Conflict of interest</title>
<p>The author declares that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec sec-type="disclaimer" id="s8">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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