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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Aquac.</journal-id>
<journal-title>Frontiers in Aquaculture</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Aquac.</abbrev-journal-title>
<issn pub-type="epub">2813-5334</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/faquc.2024.1496943</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Aquaculture</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Factors associated with disease in farmed and wild salmonids caused by <italic>Tenacibaculum maritimum</italic>: a scoping review</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Wassmuth</surname>
<given-names>Rebecca M.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
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</contrib>
<contrib contrib-type="author">
<name>
<surname>de Jongh</surname>
<given-names>Etienne J.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Uhland</surname>
<given-names>F. Carl</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Reid-Smith</surname>
<given-names>Richard J.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
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<contrib contrib-type="author">
<name>
<surname>Robertson</surname>
<given-names>Kelsey</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
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<contrib contrib-type="author" corresp="yes">
<name>
<surname>Otto</surname>
<given-names>Simon J. G.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
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<aff id="aff1">
<sup>1</sup>
<institution>HEAT-AMR (Human-Environment-Animal Transdisciplinary Antimicrobial Resistance) Research Group, School of Public Health, University of Alberta</institution>, <addr-line>Edmonton, AB</addr-line>, <country>Canada</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Antimicrobial Resistance &#x2013; One Health Consortium</institution>, <addr-line>Calgary, AB</addr-line>, <country>Canada</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>Faculty of Veterinary Medicine, University of Calgary</institution>, <addr-line>Calgary, AB</addr-line>, <country>Canada</country>
</aff>
<aff id="aff4">
<sup>4</sup>
<institution>Centre for Food-borne, Environmental, and Zoonotic Infectious Diseases, Public Health Agency of Canada</institution>, <addr-line>Guelph, ON</addr-line>, <country>Canada</country>
</aff>
<aff id="aff5">
<sup>5</sup>
<institution>Department of Population Medicine, Ontario Veterinary College, University of Guelph</institution>, <addr-line>Guelph, ON</addr-line>, <country>Canada</country>
</aff>
<aff id="aff6">
<sup>6</sup>
<institution>Healthy Environments Thematic Area Lead, Centre for Healthy Communities, School of Public Health, University of Alberta</institution>, <addr-line>Edmonton, AB</addr-line>, <country>Canada</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Krishna Thakur, University of Prince Edward Island, Canada</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Muhammed Duman, Bursa Uluda&#x11f; University, T&#xfc;rkiye</p>
<p>&#xd8;ivind Bergh, Norwegian Institute of Marine Research (IMR), Norway</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Simon J. G. Otto, <email xlink:href="mailto:simon.otto@ualberta.ca">simon.otto@ualberta.ca</email>
</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>05</day>
<month>12</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>3</volume>
<elocation-id>1496943</elocation-id>
<history>
<date date-type="received">
<day>15</day>
<month>09</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>22</day>
<month>10</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Wassmuth, de Jongh, Uhland, Reid-Smith, Robertson and Otto</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Wassmuth, de Jongh, Uhland, Reid-Smith, Robertson and Otto</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Introduction</title>
<p>Yellow mouth disease, caused by <italic>Tenacibaculum maritimum</italic>, is an important disease of farmed salmonids. Disease management currently necessitates the use of antimicrobials, raising concerns about antimicrobial resistance (AMR) in aquatic and potentially terrestrial environments. Identifying management, production, environmental, and other factors associated with the development of yellow mouth in salmonids will help to elucidate disease control strategies and decrease the economic and environmental burden of its treatment. The objective of this scoping review was to synthesize the available literature to identify factors associated with disease in farmed and wild salmonids from <italic>T. maritimum</italic>.</p>
</sec>
<sec>
<title>Methods</title>
<p>The scoping review followed the framework outlined in the Joanna Briggs Institute Reviewer&#x2019;s Manual and PRSIMA-ScR reporting guidelines. The protocol was developed <italic>a priori</italic> in consultation with a librarian and was used to search Environment Complete<sup>&#xae;</sup>, Earth, Atmospheric, and Aquatic Science<sup>&#xae;</sup>, Scopus<sup>&#xae;</sup>, and Web of Science&#x2122; databases on July 21, 2022, and again on April 27, 2023. Articles were included if they focused on <italic>T. maritimum</italic> infection in salmonids and discussed factors (environmental, management, or other) that impacted the disease and/or organism of interest.</p>
</sec>
<sec>
<title>Results</title>
<p>Twenty-five articles were included for review. Over half were published within the last five years (n=14/25). The included articles revealed a complex interplay of salmonid (host)-specific factors (age/size), management practices (vaccination, marine transfer, stocking density, gill/body abrasion), environmental conditions (water temperature, oxygenation, salinity, algal blooms, vectors), and microbial dynamics (load, co-infections, strain, biofilms, microbiome) influencing <italic>T. maritimum</italic> infections. Only one study conducted multivariable analysis to understand this complex interplay between the diverse factors that impact infection with <italic>T. maritimum</italic>.</p>
</sec>
<sec>
<title>Discussion</title>
<p>The review highlights the complex, multifactorial nature of <italic>T.&#xa0;maritimum</italic> infections, including the interplay of host biology, environmental factors, and pathogen characteristics. A comprehensive approach incorporating both management and environmental components is essential to mitigate <italic>T.&#xa0;maritimum</italic> infections in salmonid production.</p>
</sec>
</abstract>
<abstract abstract-type="graphical">
<title>Graphical Abstract</title>
<p>
<graphic xlink:href="faquc-03-1496943-g002.tif" position="anchor"/>
</p>
</abstract>
<kwd-group>
<kwd>yellow mouth disease</kwd>
<kwd>
<italic>Tenacibaculum maritimum</italic>
</kwd>
<kwd>aquaculture</kwd>
<kwd>salmon</kwd>
<kwd>management practices</kwd>
<kwd>environmental conditions</kwd>
<kwd>microbial dynamics</kwd>
</kwd-group>
<counts>
<fig-count count="1"/>
<table-count count="6"/>
<equation-count count="0"/>
<ref-count count="59"/>
<page-count count="15"/>
<word-count count="8813"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-in-acceptance</meta-name>
<meta-value>Disease and Health Management</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<label>1</label>
<title>Introduction</title>
<p>Food insecurity is growing due to the increasing global population and challenges like the COVID-19 pandemic (<xref ref-type="bibr" rid="B22">Food and Agriculture Organization of the United Nations, 2022</xref>). As the world&#x2019;s population continues to grow, demand for food also rises (<xref ref-type="bibr" rid="B22">Food and Agriculture Organization of the United Nations, 2022</xref>). Subsequently, the demand for seafood is rising and finfish is becoming a popular source of protein, accounting for 16.6 percent of global animal protein intake (<xref ref-type="bibr" rid="B22">Food and Agriculture Organization of the United Nations, 2022</xref>). Consumption of aquatic foods has expanded at an average of three percent per year between 1961 and 2019 (twice the rate of population growth) (<xref ref-type="bibr" rid="B22">Food and Agriculture Organization of the United Nations, 2022</xref>). Due to the environmental limitations associated with wild-capture fisheries, aquaculture farms are increasing production to meet the growing demand, and account for 56 percent of total aquatic animal food supply (<xref ref-type="bibr" rid="B22">Food and Agriculture Organization of the United Nations, 2022</xref>). These production systems are uniquely suited to meet the goals of the United Nations 2030 Agenda for Sustainable Development (<xref ref-type="bibr" rid="B53">UN General Assembly, 2015</xref>). As salmonid farming operations across the globe increase output to supply the growing demand, subsequent challenges such as bacterial diseases emerge (<xref ref-type="bibr" rid="B4">Asche et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B37">Ojasanya et&#xa0;al., 2022</xref>).</p>
<p>Bacterial diseases are a major challenge affecting both the sustainability and economic stability of finfish farming (<xref ref-type="bibr" rid="B27">Gourzioti et&#xa0;al., 2016</xref>). To combat these bacterial diseases, producers administer antimicrobials through medicated feed (<xref ref-type="bibr" rid="B34">Morrison and Saksida, 2013</xref>). Vaccines have been successful in reducing the need for antimicrobials in common bacterial diseases in finfish, but are ineffective against yellow mouth (<xref ref-type="bibr" rid="B34">Morrison and Saksida, 2013</xref>). The causative agent of this disease is <italic>Tenacibaculum maritimum</italic>, an opportunistic bacterium associated with many fish species worldwide (<xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>). Infection with <italic>T. maritimum</italic> can also result in tenacibaculosis (formerly known as marine flexibacteriosis); a more widespread and clinically unique disease characterized by frayed fins, tail rot, and ulcerative lesions (<xref ref-type="bibr" rid="B50">Toranzo et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B21">Fernandez-Alvarez and Santos, 2018</xref>; <xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>). In contrast to tenacibaculosis, yellow mouth is specific to the western Pacific coast in British Columbia (BC), Canada, and Washington state (<xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>). Mortality rates in BC farmed salmon attributed to yellow mouth can be as high as 15% (<xref ref-type="bibr" rid="B39">Ostland et&#xa0;al., 1999</xref>), with an economic burden that has been estimated to be $1.6 million per year for a single company (<xref ref-type="bibr" rid="B56">Wade and Weber, 2020</xref>). Since there is no commercially available vaccine to protect salmonids from yellow mouth, antimicrobials such as florfenicol and potentiated sulfonamides are prescribed to treat and control the disease (<xref ref-type="bibr" rid="B34">Morrison and Saksida, 2013</xref>). Antimicrobial use (AMU) in salmonid production in BC is largely attributed to the treatment and control of yellow mouth (<xref ref-type="bibr" rid="B34">Morrison and Saksida, 2013</xref>). For example, in 2011, 98% of the antimicrobials prescribed for BC aquaculture operations were written for bacterial stomatitis (<xref ref-type="bibr" rid="B34">Morrison and Saksida, 2013</xref>). This suggests that AMU could be dramatically reduced in western Canadian aquaculture if the disease could be prevented by other means, but little is known about management, production, environmental, and other factors contributing to its incidence, and subsequent risk reduction strategies (<xref ref-type="bibr" rid="B56">Wade and Weber, 2020</xref>).</p>
<p>Although many factors may be associated with the development of disease caused by <italic>T. maritimum</italic>, a search of Web of Science, Scopus, Environment Complete, and Earth, Science &amp; Aquatic Collection on June 15th, 2022, and April 27, 2023, did not identify a systematic or scoping review on this topic. The objective of this scoping review study was to synthesize the range of existing research on the factors associated with disease in farmed and wild salmonids caused by <italic>T. maritimum</italic> infection.</p>
</sec>
<sec id="s2">
<label>2</label>
<title>Methods</title>
<sec id="s2_1">
<label>2.1</label>
<title>Protocol, search, and information sources</title>
<p>This scoping review follows the framework outlined in the Joanna Briggs Institute Reviewer&#x2019;s Manual (<xref ref-type="bibr" rid="B3">Aromataris, 2017</xref>) and was reported according to the PRISMA-ScR guidelines (<xref ref-type="bibr" rid="B51">Tricco et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B3">Aromataris, 2017</xref>).</p>
<p>A comprehensive search strategy was developed with the assistance of Janice Kung -&#xa0;a librarian at the University of Alberta - to identify articles that reported factors that contribute to <italic>T. maritimum</italic> infection in farmed and wild salmonids. This <italic>a priori</italic> review protocol and all amended protocols were time stamped and are accessible through Open Science Framework (<xref ref-type="bibr" rid="B58">Wassmuth, 2023</xref>). Search strings (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>) (<xref ref-type="bibr" rid="B58">Wassmuth, 2023</xref>) were used to search Environment Complete<sup>&#xae;</sup>, Earth, Atmospheric, and Aquatic Science<sup>&#xae;</sup>, Scopus<sup>&#xae;</sup>, and Web of Science&#x2122; databases on July 21, 2022, and again on April 27, 2023.</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>Example search string used to search Web of Science.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="center">Keyword</th>
<th valign="top" align="center">Search String</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="center">
<italic>Tenacibaculum maritimum</italic>
</td>
<td valign="top" align="center">TOPIC: Tenacibaculum OR Tmar OR &#x201c;T. mar&#x201d; OR &#x201c;T. maritimum&#x201d; OR &#x201c;Flexibacter maritimus&#x201d; OR &#x201c;Tenacibaculum maritimum&#x201d;<break/>
<bold>OR</bold>
</td>
</tr>
<tr>
<td valign="top" align="center">Yellow Mouth</td>
<td valign="top" align="center">TOPIC: Yellow mouth OR (Yellow AND Mouth) OR (Mouth AND Rot) OR<break/>Tenacibaculosis OR &#x201c;Salt Water Columnaris Disease&#x201d; OR &#x201c;Bacterial Stomatitis&#x201d; OR &#x201c;Eroded Mouth Syndrome&#x201d; OR &#x201c;Black Patch Necrosis&#x201d; OR &#x201c;Gill Disease&#x201d;<break/>
<bold>AND</bold>
</td>
</tr>
<tr>
<td valign="top" align="center">Salmonids</td>
<td valign="top" align="center">TOPIC: Salmon OR salmonid* OR smolt* OR Grayling* OR Thymallus* OR Whitefish* OR Sockeye* OR (Salmo AND (Salar OR Gairdneri)) OR (Trout AND (Rainbow OR Redband OR Steelhead*)) OR (Oncorhynchus AND (tshawytscha OR keta OR kisutch OR nerka OR Mykiss))</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>The complete search strings for all databases used in the review are included in <xref ref-type="bibr" rid="B58">Wassmuth, 2023</xref>.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s2_2">
<label>2.2</label>
<title>Eligibility criteria</title>
<p>To be included, studies had to report that they were focused on <italic>T. maritimum</italic> infection in salmonids and factors (environmental, management, or other) that impact the disease and/or organism of interest. Factors were defined as observations that were hypothesized or measured to have a relationship with infection from <italic>T. maritimum</italic>. The search strings did not include a factor component; instead, this was assessed during screening to ensure that all relevant articles were captured for screening. No search restrictions were placed on language, publishing date, or geography. Review articles, conference abstracts, preprints, books, book chapters, theses, dissertations, commentaries, opinion pieces, editorials, and newspaper articles were excluded.</p>
<p>Articles were screened for eligibility via a two-stage process by two independent reviewers. Article titles, abstracts, and keywords were screened in the first stage, with articles proceeding to secondary screening if both reviewers determined that they fully met the inclusion criteria or were unclear. Secondary screening utilized a &#x201c;1 in 2 out&#x201d; procedure, where all articles were screened by a primary reviewer. If the reviewer included the article, it was automatically included in the review, if the reviewer excluded the article, it was screened by a secondary reviewer to confirm exclusion. This second screening round protocol amendment was reflected in the protocol which was uploaded onto Open Science Framework on September 19, 2022. After the second search was conducted on April 27, 2023, the amended protocol with search results were uploaded on May 3, 2023. Screening conflicts were resolved by discussion between reviewers, with a third independent reviewer available to resolve conflicts if required. Google translate was used to translate any non-English article for screening.</p>
</sec>
<sec id="s2_3">
<label>2.3</label>
<title>Data collection and synthesis</title>
<p>All articles retrieved from the database search were downloaded into EndNote X9 for automatic and manual removal of duplicates. The remaining articles were uploaded to DistillerSR<sup>&#xae;</sup> (Evidence Partners, Ottawa, ON, Canada) and automatically removed/deduplicated at a confidence level of 80%; manual deduplication was also performed during screening. Data extraction was performed by a single primary reviewer after consultation. Citation data, study location, year(s) of data collection, study type, characteristics of host (salmonid) and bacteria (<italic>T. maritimum</italic>), disease diagnosis technique, clinical presentation of infection, description of factors identified, and how those factors impact the disease and/or bacteria of interest were all extracted. Article information was collected in DistillerSR<sup>&#xae;</sup> and exported to a pre-developed data extraction form within Excel (Microsoft, Redmond, WA) for further interpretation. A narrative approach was used for data synthesis.</p>
</sec>
</sec>
<sec id="s3" sec-type="results">
<label>3</label>
<title>Results</title>
<sec id="s3_1">
<label>3.1</label>
<title>Selection of information sources</title>
<p>The primary search on July 21, 2022, identified 1,974 articles. A secondary search April 27, 2023, identified an additional 79 articles. After deduplication, 1,555 articles went to primary screening, where 1,437 articles were excluded, with the main reasons being that the research did not focus on <italic>T. maritimum</italic> (n=1,214) or salmonids (n=170). Of the 125 full-text articles identified for secondary screening, 7 were excluded during full text retrieval. Three of these were grey literature or book chapters. Three non-English articles did not meet the screening criteria. One article (a one-page abstract) was inaccessible after an extensive search through our institutional library and interlibrary loan program. After secondary screening, 93 articles were excluded for not pertaining to research on <italic>T. maritimum</italic> (n=45), salmonids (n=6), factors of interest (n=27), or was not primary research (n=15). Following all stages of screening, 25 studies were eligible for data extraction (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). All extracted data are provided in <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;1</bold>
</xref>.</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>PRISMA scoping review flow diagram of the study selection process for the scoping review of salmonid infection with <italic>Tenacibaculum maritimum</italic>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="faquc-03-1496943-g001.tif"/>
</fig>
</sec>
<sec id="s3_2">
<label>3.2</label>
<title>Characteristics of included articles</title>
<p>Most of the 25 included articles were published between 2017 to 2023 (n=14/25), but dated back to 1994 (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;1</bold>
</xref>). The study designs ranged from experimental (n=10/25) to longitudinal (n=7), randomized controlled trials (n=3), cross-sectional (n=2), and case reports (n=3). All included articles originated from high-income countries (<xref ref-type="bibr" rid="B52">UN Department of Economic and Social Affairs, 2022</xref>) with Australia (n=7) and Canada (n=8) representing the highest proportions. Most studies reported on Atlantic salmon as one of the salmonid species of interest (n=21). Disease caused by <italic>T. maritimum</italic> was defined as yellow mouth (n=9), tenacibaculosis (n=9), marine flexibacteriosis (n=2), acute gill disease (n=1), or not defined (n=3).</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Key characteristics of peer-reviewed articles included in the scoping review of factors related to salmonid infection with <italic>Tenacibaculum maritimum</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">Study Design<xref ref-type="table-fn" rid="fnT2_1">
<sup>a</sup>
</xref>
</th>
<th valign="middle" align="center">Author and year</th>
<th valign="middle" align="center">Location<xref ref-type="table-fn" rid="fnT2_2">
<sup>b</sup>
</xref>
</th>
<th valign="middle" align="center">Species<xref ref-type="table-fn" rid="fnT2_3">
<sup>c</sup>
</xref>
</th>
<th valign="middle" align="center">Disease Presentation<xref ref-type="table-fn" rid="fnT2_4">
<sup>d</sup>
</xref>
</th>
<th valign="middle" align="center">Factor Categories<xref ref-type="table-fn" rid="fnT2_5">
<sup>e</sup>
</xref>
</th>
</tr>
</thead>
<tbody>
<tr>
<th valign="top" colspan="6" align="left">Case Report n=3</th>
</tr>
<tr>
<td valign="top" rowspan="3" align="left"/>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>
</td>
<td valign="top" align="center">Chile</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Tenacibaculosis</td>
<td valign="top" align="center">Mg, E</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>
</td>
<td valign="top" align="center">Canada</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Yellow mouth</td>
<td valign="top" align="center">Mi</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B20">Ferguson et&#xa0;al., 2010</xref>
</td>
<td valign="top" align="center">Scotland</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Tenacibaculosis</td>
<td valign="top" align="center">E</td>
</tr>
<tr>
<th valign="top" colspan="6" align="left">Experimental n=10</th>
</tr>
<tr>
<td valign="top" rowspan="10" align="left"/>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>
</td>
<td valign="top" align="center">Australia</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Marine Flexibacteriosis</td>
<td valign="top" align="center">S, Mg, E, Mi</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B42">Powell et&#xa0;al., 2005</xref>
</td>
<td valign="top" align="center">Australia</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Yellow mouth</td>
<td valign="top" align="center">Mg</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B54">van Gelderen et&#xa0;al., 2009</xref>
</td>
<td valign="top" align="center">Australia</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Marine Flexibacteriosis</td>
<td valign="top" align="center">Mg</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B48">Soltani et&#xa0;al., 1996</xref>
</td>
<td valign="top" align="center">Australia</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">N/A</td>
<td valign="top" align="center">S, Mi</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>
</td>
<td valign="top" align="center">Australia</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Tenacibaculosis</td>
<td valign="top" align="center">Mg, E</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B38">Olsen et&#xa0;al., 2011</xref>
</td>
<td valign="top" align="center">Norway</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Tenacibaculosis</td>
<td valign="top" align="center">Mg, E, Mi</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B30">Llewellyn et&#xa0;al., 2017</xref>
</td>
<td valign="top" align="center">Canada</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Tenacibaculosis</td>
<td valign="top" align="center">E, Mi</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B29">Jones et&#xa0;al., 2007</xref>
</td>
<td valign="top" align="center">Australia</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Tenacibaculosis</td>
<td valign="top" align="center">Mg</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B43">Reid et&#xa0;al., 2017</xref>
</td>
<td valign="top" align="center">Norway</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">N/A</td>
<td valign="top" align="center">Mi</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B45">Rud et&#xa0;al., 2017</xref>
</td>
<td valign="top" align="center">Norway</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">N/A</td>
<td valign="top" align="center">Mg, Mi</td>
</tr>
<tr>
<th valign="top" align="left">RCT n=3</th>
<th valign="top" colspan="2" align="center">(Randomized controlled trial)</th>
<th valign="top" align="center">
</th>
<th valign="top" align="center">
</th>
<th valign="top" align="center">
</th>
</tr>
<tr>
<td valign="top" rowspan="3" align="left"/>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>
</td>
<td valign="top" align="center">Canada</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Yellow mouth</td>
<td valign="top" align="center">Mg, E, Mi</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B41">Powell et&#xa0;al., 2004</xref>
</td>
<td valign="top" align="center">Australia</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Acute gill disease</td>
<td valign="top" align="center">Mg, E. Mi</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B26">Ghosh et&#xa0;al., 2022</xref>
</td>
<td valign="top" align="center">Japan</td>
<td valign="top" align="center">F Chum salmon</td>
<td valign="top" align="center">N/A</td>
<td valign="top" align="center">E, Mi</td>
</tr>
<tr>
<th valign="top" colspan="6" align="left">Cross-Sectional n=2</th>
</tr>
<tr>
<td valign="top" rowspan="2" align="left"/>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B35">Nowlan et al., 2021a</xref>
</td>
<td valign="top" align="center">Canada</td>
<td valign="top" align="center">F Atlantic Salmon and Rainbow trout</td>
<td valign="top" align="center">Yellow mouth</td>
<td valign="top" align="center">Mg, E, Mi</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B46">Smage et&#xa0;al., 2017</xref>
</td>
<td valign="top" align="center">Norway</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Tenacibaculosis</td>
<td valign="top" align="center">Mg, E</td>
</tr>
<tr>
<th valign="top" colspan="6" align="left">Longitudinal n=7</th>
</tr>
<tr>
<td valign="top" rowspan="7" align="left"/>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>
</td>
<td valign="top" align="center">Ireland</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Tenacibaculosis</td>
<td valign="top" align="center">S, Mg, E, Mi</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B11">Bateman et&#xa0;al., 2022</xref>
</td>
<td valign="top" align="center">Canada</td>
<td valign="top" align="center">W Sockeye salmon</td>
<td valign="top" align="center">Yellow mouth</td>
<td valign="top" align="center">E</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B13">Brosnahan et&#xa0;al., 2019</xref>
</td>
<td valign="top" align="center">New Zealand</td>
<td valign="top" align="center">F NZ Chinook salmon</td>
<td valign="top" align="center">Tenacibaculosis</td>
<td valign="top" align="center">E</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B10">Bateman et&#xa0;al., 2021</xref>
</td>
<td valign="top" align="center">Canada</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Yellow mouth</td>
<td valign="top" align="center">S, Mi</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B8">Barker et&#xa0;al., 2009</xref>
</td>
<td valign="top" align="center">Canada</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Yellow mouth</td>
<td valign="top" align="center">E</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B9">Bass et&#xa0;al., 2022</xref>
</td>
<td valign="top" align="center">Canada</td>
<td valign="top" align="center">W Chinook and Coho salmon</td>
<td valign="top" align="center">Yellow mouth</td>
<td valign="top" align="center">S, Mg, E, Mi</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B23">Frelier et&#xa0;al., 1994</xref>
</td>
<td valign="top" align="center">United States</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Yellow mouth</td>
<td valign="top" align="center">Mg, E</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="fnT2_1">
<label>a</label>
<p>When a study design was not specified in the article, it was determined by the first author during data extraction based on the reported methods.</p>
</fn>
<fn id="fnT2_2">
<label>b</label>
<p>When the country of study and the country source of isolates did not match, the source of isolates was used.</p>
</fn>
<fn id="fnT2_3">
<label>c</label>
<p>F, farmed salmonid; W, wild salmonid.</p>
</fn>
<fn id="fnT2_4">
<label>d</label>
<p>Disease presentation as reported in the article. N/A= when the disease presentation was not specified or not applicable.</p>
</fn>
<fn id="fnT2_5">
<label>e</label>
<p>The factor categories that each article examined, as determined during data analysis after extraction: S, salmonid factors; Mg, management factors; E, environmental factors; Mi, microbial factors.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3_3">
<label>3.3</label>
<title>Synthesis of results</title>
<p>Several thematic categories were reported for factors that related to <italic>T. maritimum</italic> infection, including salmonid (n=6), management (n=15), environmental (n=16), and microbial factors (n=15) (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;1</bold>
</xref>). Most studies reported on more than one factor of interest. Out of the 25 studies included in the review, 14 did not run formal statistical comparisons. Multivariable analysis was conducted in only one study to examine the impact of temperature, salinity, and oxygenation at different depths with florfenicol use (<xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>). The remainder of the studies used statistical analysis to characterize a change in one parameter with a significant increase or decrease in another outcome variable.</p>
<table-wrap id="T3" position="float">
<label>Table&#xa0;3</label>
<caption>
<p>Thematic breakdown of all articles included in the scoping review of factors related to salmonid infection with <italic>Tenacibaculum maritimum</italic> according to their corresponding factors of interest.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">Factor of Interest</th>
<th valign="middle" align="center"># of Articles (n=25)</th>
<th valign="middle" align="center">Article Reference ID</th>
</tr>
</thead>
<tbody>
<tr>
<th valign="top" colspan="3" align="left">Salmonid factors (n=6)</th>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Species</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B48">Soltani et&#xa0;al., 1996</xref>; <xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Age/size</td>
<td valign="middle" align="center">4</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B10">Bateman et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B9">Bass et&#xa0;al., 2022</xref>)</td>
</tr>
<tr>
<th valign="top" colspan="3" align="left">Management factors (n=15)</th>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Stocking density</td>
<td valign="middle" align="center">1</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Vaccination</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B54">van Gelderen et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Fresh to saltwater transfer</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B46">Smage et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Feeding rate</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B29">Jones et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B9">Bass et&#xa0;al., 2022</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Time since transfer</td>
<td valign="middle" align="center">3</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B23">Frelier et&#xa0;al., 1994</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Pen elements</td>
<td valign="middle" align="center">3</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B45">Rud et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Gill/body abrasion</td>
<td valign="middle" align="center">8</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B41">Powell et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B42">Powell et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B38">Olsen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B46">Smage et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>)</td>
</tr>
<tr>
<th valign="top" colspan="3" align="left">Environmental factors (n=16)</th>
</tr>
<tr>
<td valign="top" align="left">&#x2003;UV irradiation</td>
<td valign="middle" align="center">1</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Algal blooms</td>
<td valign="middle" align="center">1</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Dissolved oxygen</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Water salinity</td>
<td valign="middle" align="center">3</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B23">Frelier et&#xa0;al., 1994</xref>; <xref ref-type="bibr" rid="B8">Barker et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Seasonality</td>
<td valign="middle" align="center">6</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B23">Frelier et&#xa0;al., 1994</xref>; <xref ref-type="bibr" rid="B8">Barker et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>; <xref ref-type="bibr" rid="B9">Bass et&#xa0;al., 2022</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Vectors</td>
<td valign="middle" align="center">8</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B8">Barker et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B20">Ferguson et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B30">Llewellyn et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B46">Smage et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>; <xref ref-type="bibr" rid="B11">Bateman et&#xa0;al., 2022</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Water temperature</td>
<td valign="middle" align="center">10</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B23">Frelier et&#xa0;al., 1994</xref>; <xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B8">Barker et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B38">Olsen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B13">Brosnahan et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>; <xref ref-type="bibr" rid="B26">Ghosh et&#xa0;al., 2022</xref>)</td>
</tr>
<tr>
<th valign="top" colspan="3" align="left">Microbial factors (n=15)</th>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Endotoxin production</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Strain</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B41">Powell et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Biofilm formation</td>
<td valign="middle" align="center">2</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B45">Rud et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Co-infection</td>
<td valign="middle" align="center">4</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B43">Reid et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B10">Bateman et&#xa0;al., 2021</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Skin/GI microbiota</td>
<td valign="middle" align="center">5</td>
<td valign="middle" align="center">(<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B43">Reid et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>; <xref ref-type="bibr" rid="B26">Ghosh et&#xa0;al., 2022</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">&#x2003;Bacterial load</td>
<td valign="top" align="center">8</td>
<td valign="top" align="center">(<xref ref-type="bibr" rid="B48">Soltani et&#xa0;al., 1996</xref>; <xref ref-type="bibr" rid="B41">Powell et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B38">Olsen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B30">Llewellyn et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B43">Reid et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>; <xref ref-type="bibr" rid="B9">Bass et&#xa0;al., 2022</xref>)</td>
</tr>
</tbody>
</table>
</table-wrap>
<sec id="s3_3_1">
<label>3.3.1</label>
<title>Salmonid factors</title>
<p>Six articles reported on one or more salmonid factors that contributed to infection with <italic>T. maritimum</italic> (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;1</bold>
</xref>) (<xref ref-type="bibr" rid="B48">Soltani et&#xa0;al., 1996</xref>; <xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B10">Bateman et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B9">Bass et&#xa0;al., 2022</xref>). Two studies reported an increased prevalence of infection during the first year of production at sea when the fish are smaller (<xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B10">Bateman et&#xa0;al., 2021</xref>), with a possible factor being the softness of scales at a young age (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>). In one study, the size of fish was investigated by comparing the mass of wild fish (kg) to their current length (cm) during their first year at sea (<xref ref-type="bibr" rid="B9">Bass et&#xa0;al., 2022</xref>). Authors reported that fish with a higher bacterial load of <italic>T. maritimum</italic> had a lower-than-expected mass for their length, which was identified as a function of decreased feeding rates and feed consumption in fish infected with the bacteria (<xref ref-type="bibr" rid="B9">Bass et&#xa0;al., 2022</xref>).</p>
<p>A challenge trial to assess the fish species effect found that a <italic>T. maritimum</italic> challenge concentration of 1.6 x 10<sup>6</sup> cells/mL was significantly (p&lt;0.05) associated with higher mortality in Atlantic salmon (74.9%) compared to Rainbow trout (50.0%); there were no differences at other challenge concentrations (1.8 x 10<sup>3</sup>, 2.3 x 10<sup>4</sup>, 2.3 x 10<sup>5</sup>, and 1.6 x 10<sup>7</sup> cells/mL) (<xref ref-type="bibr" rid="B48">Soltani et&#xa0;al., 1996</xref>). When salmonids were compared to non-salmonids such as greenback flounder, there was significantly higher mortality (10% vs 2%) and morbidity with lesions (20% vs 0%) in Atlantic salmon (<xref ref-type="bibr" rid="B48">Soltani et&#xa0;al., 1996</xref>). Another study reported species-specific variability in the response to infection with <italic>T. maritimum</italic> (<xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>). Greenback flounder showed mild to moderate erosions on the fins and tail with minimal histological lesions compared to the higher susceptibility and more severe lesions observed in rainbow trout and Atlantic salmon (<xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>).</p>
</sec>
<sec id="s3_3_2">
<label>3.3.2</label>
<title>Management factors</title>
<p>Most of the 15 articles that mentioned management factors (<xref ref-type="table" rid="T3">
<bold>Table&#xa0;3</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;1</bold>
</xref>) investigated gill/body abrasion (n=8) (<xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B41">Powell et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B42">Powell et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B38">Olsen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B46">Smage et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>) or pen elements (netting, cleaning systems) (n=3) (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B45">Rud et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>). Abrasion of the gills was reported to disturb respiration, which ultimately enhanced the progression of disease from <italic>T. maritimum</italic> (<xref ref-type="bibr" rid="B41">Powell et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>). Bodily abrasion, which could be a result of contact with netting or other pen elements, was reported to enhance the rate and severity of infection (<xref ref-type="bibr" rid="B38">Olsen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>). Skin lesions were commonly found in areas that were more prone to abrasion or movement, such as dorsal and pectoral fins (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>). Other studies reported that abrasion allowed bacterial proliferation below the epidermis (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>) and that the infiltration of <italic>T. maritimum</italic> was restricted to necrotic tissue (<xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>). One article reported that infection with <italic>T. maritimum</italic> appeared to occur only after abrasion of the skin (<xref ref-type="bibr" rid="B38">Olsen et&#xa0;al., 2011</xref>). However, another study reported that at high concentrations, the fish became infected with <italic>T. maritimum</italic> and died after 72 hours with no prior abrasion to the epithelium, and little sign of erosion (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>).</p>
<p>Contact with pen elements (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>), other fish (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>), or jellyfish (<xref ref-type="bibr" rid="B46">Smage et&#xa0;al., 2017</xref>), or net pen cleaning (<xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>), could have introduced <italic>T. maritimum</italic>, as it was reported that <italic>T. maritimum</italic> exists in several reservoirs such as tank walls, net pens, and water samples (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B45">Rud et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>). Studies also reported on transfer from freshwater to saltwater (<xref ref-type="bibr" rid="B46">Smage et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>), and time since transfer to saltwater between three to eight weeks (<xref ref-type="bibr" rid="B23">Frelier et&#xa0;al., 1994</xref>), and one week and one year, as factors for <italic>T. maritimum</italic> infection (<xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>). The prevalence of <italic>T. maritimum</italic> in dead and dying salmon (from all causes) was also found to be the highest in the first year after ocean entry (<xref ref-type="bibr" rid="B10">Bateman et&#xa0;al., 2021</xref>). Other management factors such as vaccines were examined (<xref ref-type="bibr" rid="B54">van Gelderen et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>). A vaccine developed for yellow mouth using isolates from western Canada was reported to be unsuccessful in protecting fish under experimental challenge conditions (<xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>). In another vaccination study on marine flexibacteriosis, authors reported that na&#xef;ve Atlantic salmon had significantly better survival rates when injected with vaccine and adjuvant than the control group or vaccine only group (<xref ref-type="bibr" rid="B54">van&#xa0;Gelderen et&#xa0;al., 2009</xref>).</p>
</sec>
<sec id="s3_3_3">
<label>3.3.3</label>
<title>Environmental factors</title>
<p>Environmental factors were reported by 16 of the included studies (<xref ref-type="table" rid="T3">
<bold>Tables&#xa0;3</bold>
</xref>&#x2013;<xref ref-type="table" rid="T5">
<bold>5</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;1</bold>
</xref>). One study reported that infection with <italic>T. maritimum</italic> did not always result in clinical signs, therefor other environmental factors might be necessary to result in clinical disease (<xref ref-type="bibr" rid="B13">Brosnahan et&#xa0;al., 2019</xref>). Water temperature was the most frequently reported environmental factor (n=10) (<xref ref-type="table" rid="T3">
<bold>Tables&#xa0;3</bold>
</xref>, <xref ref-type="table" rid="T4">
<bold>4</bold>
</xref>) (<xref ref-type="bibr" rid="B23">Frelier et&#xa0;al., 1994</xref>; <xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B8">Barker et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B38">Olsen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B13">Brosnahan et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>; <xref ref-type="bibr" rid="B26">Ghosh et&#xa0;al., 2022</xref>). An increased water temperature was reported to result in a greater prevalence of <italic>T. maritimum</italic> in the gill arches of farmed salmon (<xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>) or an increased frequency of application of florfenicol treatments (<xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>). The remaining eight articles reported a potential connection between water temperature and <italic>T. maritimum</italic> (<xref ref-type="bibr" rid="B23">Frelier et&#xa0;al., 1994</xref>; <xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B8">Barker et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B38">Olsen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B13">Brosnahan et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B26">Ghosh et&#xa0;al., 2022</xref>). Some studies reported an increased number of disease outbreaks of disease caused by <italic>T. maritimum</italic> during periods of warmer water temperatures (<xref ref-type="bibr" rid="B8">Barker et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B38">Olsen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>). One study reported that infection during periods of warmer water temperature was the result of increased stress on fish and increased bacterial growth (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>). In contrast, one study reported that the prevalence of <italic>T. maritimum</italic> did not appear to have a strong correlation with warmer water, although no statistical analysis was presented (<xref ref-type="bibr" rid="B13">Brosnahan et&#xa0;al., 2019</xref>). Another reported an overgrowth of <italic>Tenacibaculum</italic> species in the fecal microbiota of salmonids undergoing low-temperature water treatment, however, the species could not be confirmed as <italic>T. maritimum</italic> (<xref ref-type="bibr" rid="B26">Ghosh et&#xa0;al., 2022</xref>). Increases in water temperature were reported to be associated with algal blooms (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>), which have been hypothesized to be a risk factor for <italic>T. maritimum</italic> infection.</p>
<table-wrap id="T4" position="float">
<label>Table&#xa0;4</label>
<caption>
<p>Key findings and significance of temperature as an environmental factor from articles included in the scoping review of salmonid infection with <italic>Tenacibaculum maritimum</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Article</th>
<th valign="top" align="center">Species<xref ref-type="table-fn" rid="fnT4_1">
<sup>a</sup>
</xref>
</th>
<th valign="top" align="center">Outcome</th>
<th valign="top" align="center">Assessment/Evidence</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B2"><bold>Apablaza et&#xa0;al., 2017</bold></xref>
</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">
<italic>T. maritimum</italic>grew on agar at 8,16, 19, 25, and 30&#xb0;C for 7d. Limited at 8&#xb0;C; higher water temperature contributed to algal bloom and overgrowth of <italic>T. maritimum</italic>
</td>
<td valign="top" align="center">Hypothesis/Experimental Evidence</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B55"><bold>van Gelderen et&#xa0;al., 2011</bold></xref>
</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Above normal water temperatures decreased fish immune response resulting in <italic>T. maritimum</italic> infection</td>
<td valign="top" align="center">Hypothesis</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="2">
<xref ref-type="bibr" rid="B35"><bold>Nowlan et al. 2021a</bold></xref>
<break/>(Midsummer site)</td>
<td valign="top" align="center" rowspan="2">F Atlantic salmon</td>
<td valign="top" align="center">&#xa71b;Temperature = &#xa71b; florfenicol use at 0, 5, 10&#xa0;m depth (SLR<xref ref-type="table-fn" rid="fnT4_2">
<sup>b</sup>
</xref>)</td>
<td valign="top" align="center">p = &lt;0.001</td>
</tr>
<tr>
<td valign="top" align="center">&#xa71b;Temperature = &#xa71b; florfenicol use at 0, 5&#xa0;m depth (MLR<xref ref-type="table-fn" rid="fnT4_3">
<sup>c</sup>
</xref>)</td>
<td valign="top" align="center">p = 0.012, 0.042</td>
</tr>
<tr>
<td valign="top" align="left" rowspan="2">
<xref ref-type="bibr" rid="B35"><bold>Nowlan et al. 2021a</bold></xref>
<break/>(Larson Island site)</td>
<td valign="top" align="center" rowspan="2">F Atlantic salmon</td>
<td valign="top" align="center">&#xa71b;Temperature = &#xa71b; florfenicol use at 0&#xa0;m depth (SLR)</td>
<td valign="top" align="center">p = 0.077</td>
</tr>
<tr>
<td valign="top" align="center">Interaction between temperature, salinity, oxygenation at all depths (MLR)</td>
<td valign="top" align="center">p = 0.046</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B19"><bold>Downes et&#xa0;al., 2018</bold></xref>
</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">&#xa71b;Temperature = &#xa71b; prevalence of <italic>T. maritimum</italic> in the gill arches of farmed salmonids; increased  <italic>T. maritimum</italic> prevalence in the summer/autumn, decline during winter.</td>
<td valign="top" align="center">r = 0.48, p&lt;0.05</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B13"><bold>Brosnahan et&#xa0;al., 2019</bold></xref>
</td>
<td valign="top" align="center">F NZ Chinook salmon</td>
<td valign="top" align="center">Warm seawater temperatures do not correlate with increased prevalence of <italic>T. maritimum</italic>
</td>
<td valign="top" align="center">No statistical evidence</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B28"><bold>Handlinger et&#xa0;al., 1997</bold></xref>
</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Outbreak of <italic>T. maritimum</italic> in 1995 attributed to extended periods of warm sunny cloudless days and water temperatures as high as 21&#xb0;C</td>
<td valign="top" align="center">Hypothesis</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B8"><bold>Barker et&#xa0;al., 2009</bold></xref>
</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Prevalence of total bacteria was higher in the warmer months in sea lice externally and internally. <italic>T. maritimum</italic> appeared at 100% prevalence externally in all months, authors did not comment on internal prevalence pattern.</td>
<td valign="top" align="center">Prevalence</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B38"><bold>Olsen et&#xa0;al., 2011</bold></xref>
</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">A lengthened exposure time to <italic>Tenacibaculum</italic> species led to ulceration and keratitis, authors speculate that an increased temperature (12&#xb0;C compared to 9.5&#xb0;C) could have contributed to the result.</td>
<td valign="top" align="center">Hypothesis</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B23"><bold>Frelier et&#xa0;al., 1994</bold></xref>
</td>
<td valign="top" align="center">F Atlantic salmon</td>
<td valign="top" align="center">Outbreaks occurred from April to July when water temp was between 8-12&#xb0;C.</td>
<td valign="top" align="center">Observation</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B26"><bold>Ghosh et&#xa0;al., 2022</bold></xref>
</td>
<td valign="top" align="center">F Chum salmon</td>
<td valign="top" align="center">Overgrowth of <italic>Tenacibaculum</italic> species in the fecal microbiota of salmonids undergoing low-temperature water treatment.</td>
<td valign="top" align="center">Observation</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="fnT4_1">
<label>a</label>
<p>farmed salmonid</p>
</fn>
<fn id="fnT4_2">
<label>b</label>
<p>Simple logistic regression</p>
</fn>
<fn id="fnT4_3">
<label>c</label>
<p>Multivariable logistic regression</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap id="T5" position="float">
<label>Table&#xa0;5</label>
<caption>
<p>Key findings and significance of other environmental factors from articles included in the scoping review of salmonid infection with <italic>Tenacibaculum maritimum</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="center">Article</th>
<th valign="top" align="center">Species<xref ref-type="table-fn" rid="fnT5_1">
<sup>a</sup>
</xref>
</th>
<th valign="top" align="center">Factor</th>
<th valign="top" align="center">Outcome</th>
<th valign="top" align="center">Significance</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B28"><bold>Handlinger et&#xa0;al., 1997</bold></xref>
</td>
<td valign="middle" align="center">Atlantic salmon</td>
<td valign="middle" align="center">UV irradiation</td>
<td valign="middle" align="center">Likely the initial cause of lesions that could provide growth opportunity of <italic>T. maritimum</italic>
</td>
<td valign="middle" align="center">Hypothesized</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B9"><bold>Bass et&#xa0;al., 2022</bold></xref>
</td>
<td valign="middle" align="center">W Chinook salmon &amp; W rainbow trout</td>
<td valign="middle" align="center">Seasonality</td>
<td valign="middle" align="center">Decreased levels of <italic>T. maritimum</italic> in Chinook salmon associated with decreased mortality in fall and winter</td>
<td valign="middle" align="center">Posterior probability = 0.87</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B9"><bold>Bass et&#xa0;al., 2022</bold></xref>
</td>
<td valign="middle" align="center">F Atlantic salmon</td>
<td valign="middle" align="center">Dissolved oxygen</td>
<td valign="middle" align="center">Described as environmental stressor</td>
<td valign="middle" align="center">Hypothesized</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B35"><bold>Nowlan et al. 2021a</bold></xref>
 <break/>(Midsummer site)</td>
<td valign="middle" align="center">F Atlantic salmon</td>
<td valign="middle" align="center">Dissolved Oxygen</td>
<td valign="middle" align="center">Significant relationship between dissolved oxygen and application of florfenicol at 0, 5&#xa0;m when independently tested in a binomial logistic regression</td>
<td valign="middle" align="center">p = 0.000051, 0.0001</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B35"><bold>Nowlan et al. 2021a</bold></xref>
 <break/>(Larson Island site)</td>
<td valign="middle" align="center">F Atlantic salmon</td>
<td valign="middle" align="center">Salinity</td>
<td valign="middle" align="center">Significant relationship between salinity and application of florfenicol at 0, 5, 10&#xa0;m when tested in an additive binomial logistic regression</td>
<td valign="middle" align="center">p= 0.04, 0.047, 0.018</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B23"><bold>Frelier et&#xa0;al., 1994</bold></xref>
</td>
<td valign="middle" align="center">F Atlantic salmon</td>
<td valign="middle" align="center"/>
<td valign="middle" align="center">Outbreaks occurred during periods where salinity was between 29-32%</td>
<td valign="middle" align="center">Observation</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B8"><bold>Barker et&#xa0;al., 2009</bold></xref>
</td>
<td valign="middle" align="center">F Atlantic salmon</td>
<td valign="middle" align="center">Vectors &amp; Salinity</td>
<td valign="middle" align="center">No &#x2018;apparent&#x2019; association found between bacterial load of <italic>T. maritimum</italic> in sea lice and salinity</td>
<td valign="middle" align="center">Observation</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B25"><bold>Frisch et&#xa0;al., 2018</bold></xref>
</td>
<td valign="middle" align="center">F Atlantic salmon</td>
<td valign="middle" align="center">Horizontal Transmission/Vectors</td>
<td valign="middle" align="center">Evidence of horizontal transmission in cohabitation experiment between shedders and cohabitants. Could allow transmission between lumpsuckers and farmed salmon.</td>
<td valign="middle" align="center">Experimental evidence &amp; Hypothesis</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B30"><bold>Llewellyn et&#xa0;al., 2017</bold></xref>
</td>
<td valign="middle" align="center">F Atlantic salmon</td>
<td valign="middle" align="center">Vectors</td>
<td valign="middle" align="center">The abundance of <italic>Tenacibaculum</italic> species in salmonid mucous was not different in those parasitized by lice vs controls</td>
<td valign="middle" align="center">Kruskal-Wallis test indicated no significant difference</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B20"><bold>Ferguson et&#xa0;al., 2010</bold></xref>
</td>
<td valign="middle" align="center">F Atlantic salmon</td>
<td valign="middle" align="center">Vectors</td>
<td valign="middle" align="center">Jellyfish can carry and deposit <italic>T. maritimum</italic> onto fish gills</td>
<td valign="middle" align="center">Samples showing only 1 bp difference between <italic>T. maritimum</italic> on salmonid gill arch lesion and jellyfish</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B11"><bold>Bateman et&#xa0;al., 2022</bold></xref>
</td>
<td valign="middle" align="center">W Sockeye salmon</td>
<td valign="middle" align="center">Vectors</td>
<td valign="middle" align="center">Sharp peak in <italic>T. maritimum</italic> detections in wild sockeye salmon in the Discovery Islands region of BC.</td>
<td valign="middle" align="center">Modeled in many ways</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="fnT5_1">
<label>a</label>
<p>F, farmed salmonid; W, wild salmonid.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>Seasonality was reported in numerous studies and relationships to other factors such as water temperature, salinity, and dissolved oxygen were considered (n=7) (<xref ref-type="table" rid="T3">
<bold>Tables&#xa0;3</bold>
</xref>, <xref ref-type="table" rid="T5">
<bold>5</bold>
</xref>) (<xref ref-type="bibr" rid="B23">Frelier et&#xa0;al., 1994</xref>; <xref ref-type="bibr" rid="B8">Barker et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>; <xref ref-type="bibr" rid="B9">Bass et&#xa0;al., 2022</xref>). Ultraviolet irradiation from the sun was reported as a possible cause of skin lesions that then propagate the growth of <italic>T. maritimum</italic> (<xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>). One study found that increased numbers of all <italic>Tenacibaculum</italic> species, higher fish mortality, and increased tenacibaculosis outbreaks were recorded in the spring and summer compared to the fall and winter months (<xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>). Mortalities and antimicrobial applications to treat yellow mouth outbreaks during the spring and summer months were also identified to be indirectly correlated with increased temperature and decreased dissolved oxygen (<xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>). Another study reported decreased dissolved oxygen to be an environmental stressor (<xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>) that could result from events such as algal blooms, contributing to an increased prevalence of infection with <italic>T. maritimum</italic>. The prevalence of <italic>T. maritimum</italic> found in sea lice surrounding farmed salmonid pens was also highest in the summer at times with the highest water temperature and lowest dissolved oxygen (<xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>). Another study stated that decreased levels of <italic>T. maritimum</italic> in Chinook salmon were associated with decreased mortality in fall and winter (<xref ref-type="bibr" rid="B9">Bass et&#xa0;al., 2022</xref>).</p>
<p>An increase in water salinity was reported as another factor associated with the application of antimicrobials (<xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>). Outbreaks have been described to occur during periods where salinity levels were between 29-32% (<xref ref-type="bibr" rid="B23">Frelier et&#xa0;al., 1994</xref>). One study reported that they found no association between the bacterial load of <italic>T. maritimum</italic> in salmonid-parasitizing sea lice and changes in water salinity, however, the statistical significance of these results was not reported (<xref ref-type="bibr" rid="B8">Barker et&#xa0;al., 2009</xref>).</p>
<p>Vectors of <italic>T. maritimum</italic> have also been reported as factors of infection. Horizontal transmission of <italic>T. maritimum</italic> between smolts has been experimentally reported (<xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>). Other proposed vectors include sea lice (<xref ref-type="bibr" rid="B8">Barker et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B30">Llewellyn et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>), lumpsuckers (<xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>), and from farmed onto wild salmonids (<xref ref-type="bibr" rid="B11">Bateman et&#xa0;al., 2022</xref>). One study reported that salmon infected with sea lice <italic>(Lepeophtheirus salmonis</italic>) did not have increased levels of <italic>T. maritimum</italic> compared to control fish (<xref ref-type="bibr" rid="B30">Llewellyn et&#xa0;al., 2017</xref>). Jellyfish have also been proposed as a vector, however, two studies reported that they were not suspected as the original source of <italic>T. maritimum</italic> infection (<xref ref-type="bibr" rid="B46">Smage et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>). However, one article reported that jellyfish species do have the ability to carry <italic>T. maritimum</italic> and deposit it on or into the epidermis of fish upon contact (<xref ref-type="bibr" rid="B20">Ferguson et&#xa0;al., 2010</xref>).</p>
</sec>
<sec id="s3_3_4">
<label>3.3.4</label>
<title>Microbial factors</title>
<p>Microbial factors were reported by 14 of the included studies (<xref ref-type="table" rid="T3">
<bold>Tables&#xa0;3</bold>
</xref>, <xref ref-type="table" rid="T6">
<bold>6</bold>
</xref>, <xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Table&#xa0;1</bold>
</xref>). Several studies reported that <italic>T. maritimum</italic> is a natural part of the microbial community on the surface of salmonid skin, mucosal layer, and the oral cavity (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B43">Reid et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>; <xref ref-type="bibr" rid="B26">Ghosh et&#xa0;al., 2022</xref>). One study also reported that <italic>T. maritimum</italic> was able to form a biofilm on different surfaces such as tank walls (<xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>). Reports also suggested that endotoxins may be involved in the pathogenesis of disease from <italic>T. maritimum</italic>, since there was a lack of inflammatory markers found at the site of lesions (<xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>).</p>
<table-wrap id="T6" position="float">
<label>Table&#xa0;6</label>
<caption>
<p>Key findings and significance of microbial factors from articles included in the scoping review of salmonid infection with <italic>Tenacibaculum maritimum</italic>.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="middle" align="center">Article</th>
<th valign="middle" align="center">Species<sup>a</sup>
</th>
<th valign="middle" align="center">Factor</th>
<th valign="middle" align="center">Outcome</th>
<th valign="middle" align="center">Significance</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B25"><bold>Frisch et&#xa0;al., 2018</bold></xref>
</td>
<td valign="middle" align="center">F Atlantic salmon</td>
<td valign="middle" align="center">Biofilm formation</td>
<td valign="middle" align="center">Visible <italic>T. maritimum</italic> biofilm detected in experimental tank 24 hours after water flow.</td>
<td valign="middle" align="center">Experimental Evidence</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B43"><bold>Reid et&#xa0;al., 2017</bold></xref>
</td>
<td valign="middle" align="center">F Atlantic salmon</td>
<td valign="middle" align="center">Co-infection</td>
<td valign="middle" align="center">Increased incidence and amount of <italic>Tenacibaculum</italic> species on skin of salmonid alphavirus infected fish.</td>
<td valign="middle" align="center">Dose-dependent relationship</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B26"><bold>Ghosh et&#xa0;al., 2022</bold></xref>
</td>
<td valign="middle" align="center">F Chum salmon</td>
<td valign="middle" align="center">Microbiota</td>
<td valign="middle" align="center">Temperature had significant effect on chum salmon gut microbiota, skin mucous, water microbiota.</td>
<td valign="middle" align="center">P &lt;0.0001, &lt;0.0009, &lt;0.0001</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B59"><bold>Wynne et&#xa0;al., 2020</bold></xref>
</td>
<td valign="middle" align="center">F Atlantic salmon</td>
<td valign="middle" align="center">Microbiota &amp; Co-infection</td>
<td valign="middle" align="center">
<italic>T. maritimum</italic> was dominant bacteria in the oral cavity in diseased and healthy fish. <italic>Vibrio</italic> load significantly increased in fish with clinical signs of yellow mouth.</td>
<td valign="middle" align="center">P&lt;0.05</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B13"><bold>Brosnahan et&#xa0;al., 2019</bold></xref>
</td>
<td valign="middle" align="center">F NZ Chinook salmon</td>
<td valign="middle" align="center">Bacterial load</td>
<td valign="middle" align="center">Higher challenge concentrations of (2.3 x 10<sup>5</sup> cells/mL) lead to mortalities. Lower concentrations lead to lesions formed after a week.</td>
<td valign="middle" align="center">Experimental Evidence</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B13"><bold>Brosnahan et&#xa0;al., 2019</bold></xref>
</td>
<td valign="middle" align="center">F Atlantic salmon</td>
<td valign="middle" align="center">Bacterial load</td>
<td valign="middle" align="center">Higher challenge concentrations of <italic>T. maritimum</italic> (1 x 10<sup>8</sup> cells/mL) lead to 100% mortality in 2-3 days. Lower concentrations took days to weeks to cause mortalities.</td>
<td valign="middle" align="center">Experimental Evidence</td>
</tr>
<tr>
<td valign="top" align="left">
<xref ref-type="bibr" rid="B19"><bold>Downes et&#xa0;al., 2018</bold></xref>
</td>
<td valign="middle" align="center">F Atlantic salmon</td>
<td valign="middle" align="center">Co-infection</td>
<td valign="middle" align="center">Ameobic gill disease was not found to be a significant risk factor for the development or yellow mouth.</td>
<td valign="middle" align="center">Experimental Evidence</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>
<sup>a</sup>F, farmed salmonid; W, wild salmonid.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>Fish microbiota has been reported to shift according to stressors such as temperature or co-infection, which may predispose fish to growth of <italic>T. maritimum</italic> (<xref ref-type="bibr" rid="B43">Reid et&#xa0;al., 2017</xref>). The amount of <italic>T. maritimum</italic> exposure, or bacterial load, has been reported as a possible factor for infection (<xref ref-type="bibr" rid="B41">Powell et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>). In two experimental studies, higher concentrations (2.3 x 10<sup>5</sup> cells/mL &amp; 1 x 10<sup>8</sup> cells/mL) of <italic>T. maritimum</italic> in a bath challenge at constant salinity and temperature were reported to result in 100% mortality from yellow mouth within 3 days, whereas lower concentrations (&lt; 2.3 x 10<sup>5</sup> cells/mL) only resulted in mortalities after days to weeks (<xref ref-type="bibr" rid="B48">Soltani et&#xa0;al., 1996</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>).</p>
<p>In skin lesions on the dorsal and pectoral fins, it was observed that <italic>T. maritimum</italic> was restricted to the necrotic areas of the epithelium and did not infiltrate the musculature of salmon at any concentration (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>). The size of skin lesions was reported to be smaller in challenges with higher doses, and larger as doses decreased, although in the highest dose (1 x 10<sup>8</sup> cells/mL) lesions across dorsal, lateral, and pectoral areas were found in similar percentages as the other doses (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>). This finding was similarly reported in another study, which stated that superficial lesions were common in early mortalities with a higher challenge concentration (2.3 x 10<sup>5</sup> &#x2013; 1.6 x 10<sup>7</sup> cells/mL) and later mortalities had eroded ulcers (<xref ref-type="bibr" rid="B48">Soltani et&#xa0;al., 1996</xref>). Another study reported that wild salmon with a higher <italic>T. maritimum</italic> load had reduced lower-than-expected mass for their measured length (<xref ref-type="bibr" rid="B9">Bass et&#xa0;al., 2022</xref>).</p>
<p>Co-infection with other pathogens such as salmonid alphavirus (SAV) has been reported to increase the bacterial load of <italic>Tenacibaculum</italic> species on the skin of fish in a dose-dependent manner (<xref ref-type="bibr" rid="B43">Reid et&#xa0;al., 2017</xref>). This may be a response to a change in the microbial makeup of the skin, which allowed for <italic>T. maritimum</italic> to act as an opportunistic pathogen (<xref ref-type="bibr" rid="B43">Reid et&#xa0;al., 2017</xref>). One study also found higher levels of <italic>T. maritimum</italic> in dead and dying fish when compared to live fish collected from various salmon farm locations across British Columbia (<xref ref-type="bibr" rid="B10">Bateman et&#xa0;al., 2021</xref>). In cases of yellow mouth, it has been reported that <italic>T. maritimum</italic> is the dominant bacteria found in the oral cavity, although it is also one of the common bacteria in the mouths of unaffected or recovered salmon as well (<xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>). Co-infection with <italic>T. maritimum</italic> and <italic>Vibrio</italic> species was significantly associated only in salmon with yellow mouth, where <italic>Vibrio</italic> spp. load significantly increased in fish with clinical signs of yellow mouth when compared to healthy fish (<xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>). It was also reported that amoebic gill disease in salmon was not found to be a significant risk factor for the development of yellow mouth (<xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>).</p>
</sec>
</sec>
</sec>
<sec id="s4" sec-type="discussion">
<label>4</label>
<title>Discussion</title>
<sec id="s4_1">
<label>4.1</label>
<title>Summary of evidence</title>
<p>This study synthesized the range of existing research from 25 studies on salmonid management, environmental, and microbial factors associated with disease in farmed and wild salmonids caused by <italic>T. maritimum</italic> infection. Most articles were published within the last five years, with study designs ranging from experimental to case reports. Most articles (n=16) reported more than one factor, which speaks to the multifactorial nature of the disease. In general, many articles identified salmonid factors such as age and size, environmental factors such as higher temperatures and salinities, management factors such as stress from transfer, and microbial traits as a risk factor for infection with <italic>T. maritimum</italic>, along with stress and abrasion, and risk of co-infection due to its role as an opportunistic pathogen. However, most studies did not conduct multivariable analyses to understand the interplay between factors in disease caused by <italic>T. maritimum</italic>. This speaks to a knowledge gap and area for future research to elucidate the multifactorial of <italic>T. maritimum</italic> infection and identify areas for future research into management and control options. With continued research regarding the multifactorial etiology of yellow mouth, there is the potential to reduce AMU through well informed management solutions.</p>
<sec id="s4_1_1">
<label>4.1.1</label>
<title>Salmonid factors</title>
<p>The age and size of salmonids appear to be a contributing factor of <italic>T. maritimum</italic> infection. Younger fish, particularly during their first year at sea when they are smaller and have softer scales, are reported as more susceptible to infection (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B10">Bateman et&#xa0;al., 2021</xref>). Due to its lack of host specificity, disease from <italic>T. maritimum</italic> has been described in many other species such as dover sole, sea bass, red/black sea bream, and turbot, with a wide geographic range (<xref ref-type="bibr" rid="B12">Bernardet et&#xa0;al., 1994</xref>). In red/black sea bream, younger and smaller fish are reported to have more severe clinical signs than older and larger (&gt;60&#xa0;mm long) fish (<xref ref-type="bibr" rid="B57">Wakabayashi et&#xa0;al., 1984</xref>). Infection in these fish only occurred between 1-2 weeks following transfer from freshwater to saltwater (<xref ref-type="bibr" rid="B57">Wakabayashi et&#xa0;al., 1984</xref>). In Dover sole, the condition has also been described to be more common in younger fish, specifically during 60-100 days after hatching (<xref ref-type="bibr" rid="B32">McVicar and White, 1979</xref>). Decreased size as a function of increased <italic>T. maritimum</italic> load was also reported by a study, where it was concluded that this was a result of a decreased feeding rate (<xref ref-type="bibr" rid="B9">Bass et&#xa0;al., 2022</xref>). This is consistent with previous research indicating that <italic>T. maritimum</italic> infected fish become anorexic, making treatment with oral antimicrobials difficult (<xref ref-type="bibr" rid="B49">Soltani et&#xa0;al., 1995</xref>; <xref ref-type="bibr" rid="B7">Avendano-Herrera et&#xa0;al., 2006b</xref>).</p>
<p>The comparison between different salmonid species (Atlantic salmon and Rainbow trout) and non-salmonids (like greenback flounder) highlights variations in susceptibility, with Atlantic salmon showing significantly higher mortality and morbidity rates than greenback flounder, and similar morbidity/mortality to Rainbow trout (<xref ref-type="bibr" rid="B48">Soltani et&#xa0;al., 1996</xref>; <xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>). There were no studies comparing morbidity and mortality in Atlantic and Pacific (including Chinook and Coho) salmon. However, in one study comparing Atlantic salmon and Rainbow trout at different bacterial concentrations, there was only a significant difference in mortalities at a concentration of 1.6 x 10<sup>6</sup> cells/mL, not at any of the other concentrations, including a higher concentration of and 1.6 x 10<sup>7</sup> cells/mL (<xref ref-type="bibr" rid="B48">Soltani et&#xa0;al., 1996</xref>). This result was not discussed by the authors, and based on the results of the other challenges, Rainbow trout and Atlantic salmon are assumed to show similar patterns of infection; consistent with other studies (<xref ref-type="bibr" rid="B48">Soltani et&#xa0;al., 1996</xref>; <xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>). This information is crucial to understand the vulnerability of fish of different species, sizes, and ages to <italic>T. maritimum</italic>, which can inform infection risk.</p>
</sec>
<sec id="s4_1_2">
<label>4.1.2</label>
<title>Management factors</title>
<p>Management practices likely play a pivotal role in <italic>T. maritimum</italic> infection and subsequent prevention. <italic>T. maritimum</italic> has been shown to be a part of the microbial community in both healthy and yellow mouth-affected salmonids (<xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>). This emphasizes its role as an opportunistic pathogen that could cause disease in immunocompromised fish (<xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B10">Bateman et&#xa0;al., 2021</xref>). Management events such as transfer from fresh to saltwater, pen cleaning resulting in abrasion, and aggression from high stocking densities could all be stressful events resulting in infection (<xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>). Although at high enough concentrations, disease from <italic>T. maritimum</italic> has been demonstrated in the absence of abrasion (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>), many studies report that abrasion of the gills and body results in an increased severity of infection and mortality (<xref ref-type="bibr" rid="B41">Powell et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B38">Olsen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>). This was reported in another study involving sea bass, when scarified and smeared with <italic>Flexibacter maritimus</italic> broth culture, total mortality occurred within four days, with no mortality occurring in fish injected with the bacteria (<xref ref-type="bibr" rid="B12">Bernardet et&#xa0;al., 1994</xref>). The potential role of pen cleaning events in introducing <italic>T. maritimum</italic> emphasizes the need for careful maintenance of aquaculture facilities (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>). Higher stocking densities and improper feeding practices could result in aggressive behavior in Atlantic salmon (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>) who have been shown to bite and charge, resulting in abrasions (<xref ref-type="bibr" rid="B33">Mork et&#xa0;al., 1999</xref>). Reduced mortality due to <italic>T. maritimum</italic> has been demonstrated in Tasmania, where changed management procedures such as feeding practices and stocking densities were decreased (<xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>).</p>
<p>Transfer from freshwater to saltwater was also identified as a factor (<xref ref-type="bibr" rid="B46">Smage et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>), especially during the first year at sea (<xref ref-type="bibr" rid="B23">Frelier et&#xa0;al., 1994</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>). This transfer is a stressful event that can pre-dispose fish to infection with <italic>T. maritimum</italic> (<xref ref-type="bibr" rid="B57">Wakabayashi et&#xa0;al., 1984</xref>; <xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>). This change has also been shown to alter the microbial community of the salmonid gut (<xref ref-type="bibr" rid="B17">Dehler et&#xa0;al., 2017</xref>), which could lead to dysbiosis and the overgrowth of opportunistic pathogens such as <italic>T. maritimum</italic>. Future research investigating microbial indicators could identify salmonids at risk for dysbiosis and disease (<xref ref-type="bibr" rid="B17">Dehler et&#xa0;al., 2017</xref>).</p>
<p>Vaccine development is a crucial management tool that could decrease <italic>T. maritimum</italic> outbreaks and thus antimicrobial use. AMR is a problem that exists at the interface of humans, animals, and the environment, therefore, we must consider it from a One Health perspective (<xref ref-type="bibr" rid="B16">Collignon and McEwen, 2019</xref>). With AMU in aquaculture, there comes the risk of AMR bacterial strains and genes developing in the aquatic environment and spreading to the terrestrial environment (<xref ref-type="bibr" rid="B16">Collignon and McEwen, 2019</xref>). By developing vaccines to prevent disease outbreaks or reduce morbidity/mortality of fish due to yellow mouth, the environmental and economic damages associated with yellow mouth can be modulated. Currently, the only vaccine approved for use against <italic>T. maritimum</italic> is for turbot in Spain (<xref ref-type="bibr" rid="B36">Nowlan et&#xa0;al., 2021b</xref>). In a vaccination study conducted in Tasmania and published in 2009, na&#xef;ve Atlantic salmon had significantly better survival rates when injected with vaccine and adjuvant (Freund&#x2019;s incomplete adjuvant), than the control group or vaccine-only group when challenged with <italic>T. maritimum</italic> (<xref ref-type="bibr" rid="B54">van Gelderen et&#xa0;al., 2009</xref>). This suggests the necessity for an adjuvant to demonstrate protection, however, the adjuvant group developed areas of melanin with granulomas and cysts focused in the fundic region (<xref ref-type="bibr" rid="B54">van Gelderen et&#xa0;al., 2009</xref>). These side-effects could lead to growth impairment and feed impaction (<xref ref-type="bibr" rid="B54">van Gelderen et&#xa0;al., 2009</xref>). A more recent study developed a vaccine for yellow mouth using isolates from western Canada that was able to elicit an antibody response, however, in a challenge scenario protection was not observed (<xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>). A difficulty in the development of a vaccine for salmonids may be due to the lack of repeatable and reliable challenge models (<xref ref-type="bibr" rid="B36">Nowlan et&#xa0;al., 2021b</xref>). Further, clinical signs of tenacibaculosis may be attributable to several <italic>Tenacibaculum</italic> species, making strain and species selection a challenge (<xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B36">Nowlan et&#xa0;al., 2021b</xref>). This emphasizes the need for a reliable challenge model for <italic>T. maritimum</italic> in salmonids, and further vaccine development research.</p>
</sec>
<sec id="s4_1_3">
<label>4.1.3</label>
<title>Environmental factors</title>
<p>Environmental conditions could significantly impact the amount of <italic>T. maritimum</italic> in the environment and therefor increase the risk of <italic>T. maritimum</italic> infection. Water temperature was reported as a factor of infection in many studies, with a consistent theme being that warmer water increases the prevalence of <italic>T. maritimum</italic>. The optimum growth range for <italic>T. maritimum</italic> is between 15-30&#xb0;C, with temperatures above 15&#xb0;C and higher salinities between 30-35% described as risk factors for tenacibaculosis (<xref ref-type="bibr" rid="B7">Avendano-Herrera et&#xa0;al., 2006b</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>). Outbreaks in both salmonids and other farmed fish such as wedge sole have been reported to occur at water temperatures between 15-20&#xb0;C, which may be the result of an increased stress response in fish and increased bacterial growth (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B31">Mabrok et&#xa0;al., 2023</xref>). In adult Chinook salmon, warmer water temperature (16-24&#xb0;C) has been associated with decreased growth and impaired smoltification (<xref ref-type="bibr" rid="B15">Carter, 2005</xref>). In salmonids, it is suggested that risk from all diseases is limited at temperatures between 12-13&#xb0;C, with risk increasing from 14-17&#xb0;C and high from 18-20&#xb0;C (<xref ref-type="bibr" rid="B15">Carter, 2005</xref>). Exposure to temperatures outside of optimum rearing ranges may result in increased stress, which has immunosuppressive action (<xref ref-type="bibr" rid="B1">Abram et&#xa0;al., 2017</xref>). There is an observed suppression of the immune system when fish are exposed to cold stress due to overwintering strategies (<xref ref-type="bibr" rid="B1">Abram et&#xa0;al., 2017</xref>). This could explain why outbreaks of tenacibaculosis have also been observed in the winter months, why another study described an overgrowth of <italic>Tenacibaculum</italic> species in the fecal microbiota of salmonids undergoing low-temperature water treatment (<xref ref-type="bibr" rid="B26">Ghosh et&#xa0;al., 2022</xref>), or why decreased levels of <italic>T. maritimum</italic> in Chinook salmon in the fall and winter months were associated with decreased mortality (<xref ref-type="bibr" rid="B9">Bass et&#xa0;al., 2022</xref>). This further highlights the multiplicity of considerations at play even within one environmental factor of interest.</p>
<p>It has been postulated that factors such as UV irradiation, changes in salinity, and dissolved oxygen levels are associated with yellow mouth in salmonids (<xref ref-type="bibr" rid="B56">Wade and Weber, 2020</xref>). Decreasing the salinity and/or temperature in a pen has previously been shown to reduce yellow mouth mortality in affected salmonids (<xref ref-type="bibr" rid="B47">Soltani and Burke, 1995</xref>), however, subsequent studies found that freshwater treatments had no significant effect on the presence of the bacteria (<xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>). Outbreaks of yellow mouth are significantly correlated with seasonality, with increasing prevalence in the summer, followed by a decline in outbreaks over the winter months (<xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>). The predisposing source of tissue damage by UV irradiation and subsequent <italic>T. maritimum</italic> infiltration has been supported by several outbreak cases where spongy changes, as reported by Bullock et&#xa0;al., 1988, were observed to be the likely result of UV damage (<xref ref-type="bibr" rid="B14">Bullock, 1988</xref>; <xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>). In natural infections, eye and dorsal surface lesions were more common in comparison to experimental conditions, which could also confirm the importance of UV irradiation (<xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>). However, this is not the sole predisposing factor, since disease with similar lesions in different locations has been found in fish in settings with controlled lighting (<xref ref-type="bibr" rid="B28">Handlinger et&#xa0;al., 1997</xref>). Algal blooms have been suggested as a factor in <italic>T. maritimum</italic> infection outbreaks, since algal blooms decrease oxygenation and increase stress on fish (<xref ref-type="bibr" rid="B44">Riisberg and Edvardsen, 2008</xref>; <xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>). Higher water temperatures which are conducive to the growth of <italic>T. maritimum</italic> also lead to algal blooms, which could result in a multiplicity of stressors leading to infection (<xref ref-type="bibr" rid="B44">Riisberg and Edvardsen, 2008</xref>; <xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>). Recognizing these environmental factors can aid in predicting and mitigating <italic>T. maritimum</italic> outbreaks, especially in regions where aquaculture is prevalent.</p>
<p>
<italic>T. maritimum</italic> has no host specificity and can transmit horizontally, therefore vectors are a factor of interest. Potential vectors for transmission in salmonids could be sea lice (<xref ref-type="bibr" rid="B8">Barker et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B30">Llewellyn et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>), jellyfish (<xref ref-type="bibr" rid="B46">Smage et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B19">Downes et&#xa0;al., 2018</xref>), and lumpsuckers (<xref ref-type="bibr" rid="B25">Frisch et&#xa0;al., 2018</xref>). However, none of the included studies were able to demonstrate that the vector of interest was the original source of <italic>T. maritimum</italic>. Instead, vectors such as jellyfish or plankton may play a role in tissue damage leading to abrasion, which could allow <italic>T. maritimum</italic> to proliferate (<xref ref-type="bibr" rid="B20">Ferguson et&#xa0;al., 2010</xref>; <xref ref-type="bibr" rid="B2">Apablaza et&#xa0;al., 2017</xref>). <italic>T. maritimum</italic> has been detected in <italic>Pelagia quadtrata</italic> and <italic>Muggiaea atlantica</italic> and <italic>Pelagia notiluca</italic> jellyfish species which are known to cause gill damage leading to disease in salmon (<xref ref-type="bibr" rid="B18">Delannoy et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B24">Fringuelli et&#xa0;al., 2012</xref>). The transmission of <italic>T. maritimum</italic> between wild and farmed salmonids in BC has also been a concern in the recent years, due to the decline of Sockeye salmon in the region (<xref ref-type="bibr" rid="B11">Bateman et&#xa0;al., 2022</xref>). In a study screening Sockeye salmon smolts as they migrate past salmon farms in the Discovery Islands region, there was a peak of 12.7 times the background level of <italic>T. maritimum</italic> prevalence (<xref ref-type="bibr" rid="B11">Bateman et&#xa0;al., 2022</xref>). However, this could not be confirmed because of interaction with farmed fish, as the region is described as a hydrographic funnel that forces migrating salmon into a higher density and could magnify all sources of <italic>T. maritimum</italic> pressure (<xref ref-type="bibr" rid="B11">Bateman et&#xa0;al., 2022</xref>).</p>
</sec>
<sec id="s4_1_4">
<label>4.1.4</label>
<title>Microbial factors</title>
<p>
<italic>T. maritimum</italic> is part of the natural microbial community on the surface of salmonids (<xref ref-type="bibr" rid="B55">van Gelderen et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B43">Reid et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>; <xref ref-type="bibr" rid="B26">Ghosh et&#xa0;al., 2022</xref>). Based on previous bacterial culture reports, <italic>T. maritimum</italic> is difficult to culture in non-sterile seawater, which may suggest that its growth is inhibited in the natural aquatic environment due to inhibition of other bacteria (<xref ref-type="bibr" rid="B6">Avendano-Herrera et&#xa0;al., 2006a</xref>). Understanding the microbial makeup of fish skin, mucus, and oral cavity is essential in assessing the risk of <italic>T. maritimum</italic> infections. Fish microbiota can shift and undergo dysbiosis because of challenges from stress such as temperature, fresh to saltwater transfer, and co-infection (<xref ref-type="bibr" rid="B43">Reid et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B26">Ghosh et&#xa0;al., 2022</xref>). Under experimental conditions, it has been demonstrated that temperature has a significant effect on the salmonid gut microbiota, skin mucous, and water microbiota (<xref ref-type="bibr" rid="B26">Ghosh et&#xa0;al., 2022</xref>). This dysbiosis allows for pathogenic and opportunistic bacteria to proliferate, for example, salmonid alphavirus infection can increase the bacterial load of <italic>Tenacibaculum</italic> species on the skin of infected fish (<xref ref-type="bibr" rid="B43">Reid et&#xa0;al., 2017</xref>). Differences in microbial load challenge studies, such as number of data replicates must also be considered. Studies have also reported strong and significant positive correlations between <italic>T. maritimum</italic> and many other infectious agents in farmed Atlantic salmon in BC (<xref ref-type="bibr" rid="B10">Bateman et&#xa0;al., 2021</xref>). <italic>Tenacibaculum dicentrarchi</italic> and <italic>Tenacibaculum finnmarkense</italic> have also been linked to tenacibaculosis outbreaks in Chile and Canada (<xref ref-type="bibr" rid="B5">Avendano-Herrera et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>). These bacteria are often found together and may result in disease displaying similar clinical signs such as mouth erosions and frayed fins (<xref ref-type="bibr" rid="B59">Wynne et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B35">Nowlan et&#xa0;al., 2021a</xref>; <xref ref-type="bibr" rid="B31">Mabrok et&#xa0;al., 2023</xref>). Therefore, it is becoming increasingly important to understand the natural microbial community of salmonids and the pathogenic source of outbreaks, to further develop treatment and control strategies.</p>
</sec>
</sec>
<sec id="s4_2">
<label>4.2</label>
<title>Data gaps</title>
<p>The identification of multivariable models that simultaneously account for several factors simultaneously associated with <italic>T. maritimum</italic> infections in salmonids is notably absent in the literature, representing a significant gap in our understanding of the disease&#x2019;s multifactorial etiology. Although the articles identified individual factors&#x2014;such as environmental conditions, management practices, and host-specific traits&#x2014;that influence <italic>T. maritimum</italic> infections, the interactions among these variables remain poorly characterized. To better understand the nature of yellow mouth outbreaks, the antagonistic or synergistic effects of a combination of factors must be examined.</p>
</sec>
<sec id="s4_3">
<label>4.3</label>
<title>Limitations</title>
<p>To reduce the risk of not capturing all eligible articles, this review followed a systematic approach (<xref ref-type="bibr" rid="B40">Pham et&#xa0;al., 2014</xref>). The search strategy did not include any restrictions regarding language, however, a few articles were excluded because of difficulty with translation. This review was specific to salmonids and infection with <italic>T. maritimum</italic> and its resulting diseases. Due to the complex interactions of pathogens that may result in infection, and the lack of common naming standards, it is possible that some articles were missed. The lack of statistical analysis and multivariable analysis limited the ability to understand the interplay between factors for infection, as well as clinical disease-specific factors resulting from infection. Also, species other than salmonids were outside of the scope of this review, therefore, some factors that impact other species of fish which could give insight to salmonid disease may not have been included and are a topic for further study. Given the focus of this review on factors associated with salmonid infection with <italic>T. maritimum</italic>, it is not possible to infer the geographical distribution of the disease from the locations of the studies included in the review. It is possible that disease in other regions may have different factors associated with infection, which were not captured by this review.</p>
</sec>
<sec id="s4_4" sec-type="conclusions">
<label>4.4</label>
<title>Conclusions</title>
<p>These results suggest a complex interplay of factors contributing to <italic>T. maritimum</italic> infections in salmonids. Effective management and prevention strategies should consider the age and size of fish, minimize gill and body abrasion, environmental conditions, and account for the microbial composition of fish and their surroundings. Future research to conduct experiments and observational studies that allow for assessment of the interplay between factors is crucial to fill this data gap. This will be crucial for developing targeted approaches to reduce the impact of <italic>T. maritimum</italic> in farmed and wild salmonid.</p>
</sec>
</sec>
</body>
<back>
<sec id="s5" sec-type="data-availability">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SM1">
<bold>Supplementary Material</bold>
</xref>. Further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="s6" sec-type="ethics-statement">
<title>Ethics statement</title>
<p>Ethical approval was not required for the study involving animals in accordance with the local legislation and institutional requirements because this is a scoping review of published literature.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>RW: Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing &#x2013; original draft, Writing &#x2013; review &amp; editing. EJ: Data curation, Writing &#x2013; review &amp; editing. FU: Conceptualization, Data curation, Methodology, Writing &#x2013; review &amp; editing. RR-S: Funding acquisition, Resources, Writing &#x2013; review &amp; editing. KR: Conceptualization, Data curation, Methodology, Project administration, Writing &#x2013; review &amp; editing. SO: Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing &#x2013; original draft, Writing &#x2013; review &amp; editing.</p>
</sec>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>The author(s) declare financial support was received for the research, authorship, and/or publication of this article. Funding for this project was provided by a NSERC Discovery Grant (NSERC RGPIN-2020-04447) held by SO. Funding for RW and EJ stipends were provided in part by a NSERC Discovery Grant (NSERC RGPIN-2020-04447) and by the Public Health Agency of Canada. KR was supported by funding from the AMR One Health Consortium (Major Innovation Fund, Alberta Ministry of Jobs, Economy, and Innovation RCP-19-003-MIF).</p>
</sec>
<ack>
<title>Acknowledgments</title>
<p>We thank Janice Kung from the University of Alberta Library for her assistance to develop the search strings for the review.</p>
</ack>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
<sec id="s11" sec-type="supplementary-material">
<title>Supplementary material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.frontiersin.org/articles/10.3389/faquc.2024.1496943/full#supplementary-material">https://www.frontiersin.org/articles/10.3389/faquc.2024.1496943/full#supplementary-material</ext-link>
</p>
<supplementary-material xlink:href="Table1.xlsx" id="S1" mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet"/>
<supplementary-material xlink:href="DataSheet1.pdf" id="SM1" mimetype="application/pdf"/>
</sec>
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