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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Antibiot.</journal-id>
<journal-title>Frontiers in Antibiotics</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Antibiot.</abbrev-journal-title>
<issn pub-type="epub">2813-2467</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.3389/frabi.2023.1135485</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Antibiotics</subject>
<subj-group>
<subject>Review</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Repurposing inhibitors of phosphoinositide 3-kinase as adjuvant therapeutics for bacterial infections</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Fleeman</surname>
<given-names>Renee</given-names>
</name>
<xref ref-type="author-notes" rid="fn001">
<sup>*</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1726027"/>
<xref ref-type="author-notes" rid="fn003">
<sup>&#x2020;</sup>
</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<institution>Division of Immunity and Pathogenesis, Burnett School of Biomedical Sciences, College of Medicine, University of Central Florida</institution>, <addr-line>Orlando, FL</addr-line>, <country>United States</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>Edited by: Waleed Younis, South Valley University, Egypt</p>
</fn>
<fn fn-type="edited-by">
<p>Reviewed by: Abhishek Mishra, Houston Methodist Research Institute, United States; Aref Shariati, Iran University of Medical Sciences, Iran</p>
</fn>
<fn fn-type="corresp" id="fn001">
<p>*Correspondence: Renee Fleeman, <email xlink:href="mailto:Renee.Fleeman@ucf.edu">Renee.Fleeman@ucf.edu</email>
</p>
</fn>
<fn fn-type="other" id="fn003">
<p>&#x2020;ORCID: Renee Fleeman, <uri xlink:href="https://orcid.org/0000-0001-7103-461X">orcid.org/0000-0001-7103-461X</uri>
</p>
</fn>
<fn fn-type="other" id="fn002">
<p>This article was submitted to Antibiotic Development, a section of the journal Frontiers in Antibiotics</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>09</day>
<month>02</month>
<year>2023</year>
</pub-date>
<pub-date pub-type="collection">
<year>2023</year>
</pub-date>
<volume>2</volume>
<elocation-id>1135485</elocation-id>
<history>
<date date-type="received">
<day>31</day>
<month>12</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>30</day>
<month>01</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2023 Fleeman</copyright-statement>
<copyright-year>2023</copyright-year>
<copyright-holder>Fleeman</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>The rise in antimicrobial resistance and the decline in new antibiotics has created a great need for novel approaches to treat drug resistant bacterial infections. Increasing the burden of antimicrobial resistance, bacterial virulence factors allow for survival within the host, where they can evade host killing and antimicrobial therapy within their intracellular niches. Repurposing host directed therapeutics has great potential for adjuvants to allow for more effective bacterial killing by the host and antimicrobials. To this end, phosphoinositide 3-kinase inhibitors are FDA approved for cancer therapy, but also have potential to eliminate intracellular survival of pathogens. This review describes the PI3K pathway and its potential as an adjuvant target to treat bacterial infections more effectively.</p>
</abstract>
<kwd-group>
<kwd>kinase inhibitor</kwd>
<kwd>drug resistant bacteria</kwd>
<kwd>adjuvant antibiotics</kwd>
<kwd>intracellular bacteria multiplication</kwd>
<kwd>bacterial invasion and survival</kwd>
</kwd-group>
<contract-num rid="cn001">K99AI163295</contract-num>
<contract-sponsor id="cn001">National Institutes of Health<named-content content-type="fundref-id">10.13039/100000002</named-content>
</contract-sponsor>
<counts>
<fig-count count="5"/>
<table-count count="2"/>
<equation-count count="0"/>
<ref-count count="134"/>
<page-count count="12"/>
<word-count count="6066"/>
</counts>
</article-meta>
</front>
<body>
<sec id="s1" sec-type="intro">
<title>Introduction</title>
<p>We are approaching a future where the antibiotics that we rely on today will no longer be effective (<xref ref-type="bibr" rid="B96">Reardon, 2014</xref>). Consequently, there is an urgent need to find new therapeutics for multi drug resistant bacteria (<xref ref-type="bibr" rid="B27">De Oliveira et&#xa0;al., 2020</xref>). However, finding novel antibiotics to replace our existing arsenal has proven to be difficult (<xref ref-type="bibr" rid="B107">Silver, 2011</xref>). To answer this unmet need for novel antibacterials, there have been investigations into the potential of adjuvant therapeutics that inhibit bacterial drug resistance or improve immune system clearance of bacteria (<xref ref-type="bibr" rid="B1">Abdul-Ghani et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B126">Wright, 2016</xref>; <xref ref-type="bibr" rid="B69">Liu et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B22">Chang et&#xa0;al., 2021</xref>). These therapeutics do not directly kill the bacteria but allow for better clearance of the infection by the host and/or common antibiotics (<xref ref-type="bibr" rid="B126">Wright, 2016</xref>,) (<xref ref-type="bibr" rid="B134">Zumla et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B24">Chiang et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B54">Kaufmann et&#xa0;al., 2018</xref>), which could improve the therapeutic outcome in patients with severe or chronic bacterial infections (<xref ref-type="bibr" rid="B55">Kilinc et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B120">Wallis et&#xa0;al., 2022</xref>). Although not yet approved by the FDA, there are a variety of host directed therapeutics being investigated to help treat bacterial infections (<xref ref-type="bibr" rid="B54">Kaufmann et&#xa0;al., 2018</xref>; <xref ref-type="bibr" rid="B7">Barker et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B70">Liu et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B120">Wallis et&#xa0;al., 2022</xref>).</p>
<p>A host kinase that has promise as a potential adjuvant therapeutic target is phosphoinositide 3-kinase (PI3K) (<xref ref-type="bibr" rid="B57">Kiran et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B91">Paik et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B2">Adefemi et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B55">Kilinc et&#xa0;al., 2021</xref>). PI3K is dysfunctional in a wide range of cancers and inhibition of PI3K has proven effective to mitigate the carcinogenic upregulation of PI3K that leads to uncontrolled cellular growth (<xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>). The advantage of repurposing PI3K inhibitors for infectious disease treatment is they are already FDA approved for cancer therapy and there is abundance research into PI3K inhibitors (<xref ref-type="bibr" rid="B35">Garber, 2014</xref>; <xref ref-type="bibr" rid="B133">Zhang et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B79">Mishra et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B115">Vanhaesebroeck et&#xa0;al., 2021</xref>; <xref ref-type="bibr" rid="B98">Richardson et&#xa0;al., 2022</xref>). There are several classes and isotypes of PI3Ks used ubiquitously throughout the body. However, class 1 and 3 PI3Ks are those involved specifically in macrophage killing of bacteria (<xref ref-type="bibr" rid="B37">Gillooly et&#xa0;al., 2001</xref>). In addition, class 1 PI3Ks are important for neutrophil migration, and it has been shown that aberrant migration in aged neutrophils is corrected in the presence of PI3K inhibitors (<xref ref-type="bibr" rid="B101">Sapey et&#xa0;al., 2014</xref>).</p>
<p>Inhibition of PI3K has potential as an adjuvant because bacterial pathogens manipulate the PI3K pathway to invade host cells and survive intracellularly (<xref ref-type="bibr" rid="B60">Krachler et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B86">Ogawa et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B114">Van Avondt et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B64">Ledvina et&#xa0;al., 2018</xref>). Depending on the stage of infection, bacterial manipulation of the PI3K pathway results in different outcomes that range from facilitating bacterial uptake into the host cells to inhibiting phagosome maturation and lysosomal fusion (<xref ref-type="bibr" rid="B37">Gillooly et&#xa0;al., 2001</xref>; <xref ref-type="bibr" rid="B116">Vergne et&#xa0;al., 2003</xref>; <xref ref-type="bibr" rid="B118">Vergne et&#xa0;al., 2004</xref>; <xref ref-type="bibr" rid="B117">Vergne et&#xa0;al., 2005</xref>; <xref ref-type="bibr" rid="B18">Cano et&#xa0;al., 2015</xref>). Obligate and non-obligate intracellular pathogens, <italic>Chlamydia trachomatis</italic> and <italic>Mycobacteria tuberculosis</italic> respectively, are examples of bacterial species that can survive and replicate intracellularly through manipulation of the PI3K pathway (<xref ref-type="bibr" rid="B6">Bai et&#xa0;al., 2014</xref>; <xref ref-type="bibr" rid="B16">Brooks et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B100">Sah and Lutter, 2020</xref>). PI3K manipulation by these species results in infections that are not only protected from host immune killing but are recalcitrant to antibiotic treatment (<xref ref-type="bibr" rid="B40">Hartkoorn et&#xa0;al., 2007</xref>; <xref ref-type="bibr" rid="B8">Bastidas and Valdivia, 2016</xref>; <xref ref-type="bibr" rid="B29">Ellis et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B132">Yu et&#xa0;al., 2020</xref>). In addition, facultative intracellular bacteria <italic>Klebsiella pneumoniae</italic> and <italic>Salmonella typhimurium</italic> can manipulate the PI3K pathway to avoid phagosome maturation and survive within macrophages for several days (<xref ref-type="bibr" rid="B85">Oelschlaeger and Tall, 1997</xref>; <xref ref-type="bibr" rid="B18">Cano et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B11">Bengoechea and Sa Pessoa, 2019</xref>). Utilizing PI3K inhibitors as adjuvants in combination with antibiotics for these infections would eliminate intracellular bacteria (<xref ref-type="bibr" rid="B87">Oghumu and Satoskar, 2013</xref>; <xref ref-type="bibr" rid="B56">Kimmey and Stallings, 2016</xref>) to allow more effective host bacterial clearance and antibiotic treatment (<xref ref-type="bibr" rid="B18">Cano et&#xa0;al., 2015</xref>). This review provides a brief overview of 1) PI3K function; 2) the various PI3K inhibitors; 3) how bacteria can manipulate PI3K to their advantage and 4) how PI3K inhibitors have potential as adjuvants to eliminate pathogens from their protective niches.</p>
</sec>
<sec id="s2">
<title>Phosphoinositol 3-kinases</title>
<p>Phosphoinositol 3-kinases (PI3Ks) are lipid kinases that reside in the plasma membrane of mammalian cells and consist of three subunits: two regulatory subunits p85 and p55; and a catalytic subunit p110 (<xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>) (<xref ref-type="fig" rid="f1">
<bold>Figure&#xa0;1</bold>
</xref>). PI3Ks become activated after a transmembrane protein (ie. receptor tyrosine kinases (RTK)) signals the p85 regulatory subunit to bind and activate the p110 catalytic subunit (<xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>). The catalytic subunit then phosphorylates phosphatidylinositol-4,5-bisphosphate (PtdIns-4,5-P<sub>2</sub> or PIP2) to phosphatidylinositol-3,4,5-triphosphate (PtdIns-3,4,5-P<sub>3</sub> or PIP3) (<xref ref-type="bibr" rid="B33">Fruman et&#xa0;al., 2017</xref>). Following phosphorylation, PIP3 is used as a secondary messenger to recruit and activate cytosolic proteins (ie. AKT and PDK-1) for a variety of purposes (<xref ref-type="bibr" rid="B33">Fruman et&#xa0;al., 2017</xref>) that vary between different cell types and PI3K isotypes (<xref ref-type="bibr" rid="B63">Leahy et&#xa0;al., 2012</xref>).</p>
<fig id="f1" position="float">
<label>Figure&#xa0;1</label>
<caption>
<p>The PI3K pathway. The figure shows the PI3K pathway beginning with receptor tyrosine kinase (RTK) induction and phosphorylation of the catalytic PI3K subunit p110. The catalytic subunit then catalyzes the phosphorylation from PIP2 to PIP3, which in turn can then activate AKT and PDK-1 to activate downstream pathways (ie. mTOR, NF-k&#x3b2;, and RAC-1).</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="frabi-02-1135485-g001.tif"/>
</fig>
<sec id="s2_1">
<title>PI3K isotypes and classes</title>
<p>There are 3 classes of PI3Ks and of these, class 1 is the most extensively studied due to having a major role in cancer development (<xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>) (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). This class is therefore the target of most therapeutic inhibitors in clinical development. Although not as well characterized as class 1, class 2 PI3Ks also have been shown to have role in cancer development (<xref ref-type="bibr" rid="B39">Gulluni et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B38">Gulluni et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B42">He et&#xa0;al., 2021</xref>). Specifically, this class has been shown to be important for migration of prostate cancer cells (<xref ref-type="bibr" rid="B77">Mavrommati et&#xa0;al., 2016</xref>). Class 3 PI3Ks are involved in membrane trafficking, endosome-lysosome maturation, and autophagosome formation (<xref ref-type="bibr" rid="B51">Jean and Kiger, 2014</xref>). Class 3 has been shown to play an important role in autophagy in the liver and heart (<xref ref-type="bibr" rid="B50">Jaber et&#xa0;al., 2012</xref>). However, this class has not yet been shown to have any role in disease or cancer (<xref ref-type="bibr" rid="B51">Jean and Kiger, 2014</xref>). Although PI3Ks are ubiquitous throughout the body, with select isotypes found in various compartment that have unique roles (<xref ref-type="bibr" rid="B63">Leahy et&#xa0;al., 2012</xref>).</p>
<table-wrap id="T1" position="float">
<label>Table&#xa0;1</label>
<caption>
<p>PI3K classes and isotypes.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Classes</th>
<th valign="top" align="center">Isotype</th>
<th valign="top" align="left">Location</th>
<th valign="top" align="left">Important role</th>
<th valign="top" align="left">Ref</th>
</tr>
</thead>
<tbody>
<tr>
<th valign="top" colspan="5" align="left">Class I</th>
</tr>
<tr>
<td valign="top" align="left">Class IA</td>
<td valign="top" align="left">p110<bold>&#x3b1;</bold>
</td>
<td valign="top" align="left">ubiquitous</td>
<td valign="top" align="left">Cell signaling and growth</td>
<td valign="top" align="center">(<xref ref-type="bibr" rid="B122">Utermark et&#xa0;al., 2012</xref>)</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">p110<bold>&#x3b2;</bold>
</td>
<td valign="top" align="left">ubiquitous</td>
<td valign="top" align="left">Cell signaling and growth</td>
<td valign="top" align="center">(<xref ref-type="bibr" rid="B122">Utermark et&#xa0;al., 2012</xref>)</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">p110<bold>&#x3b4;</bold>
</td>
<td valign="top" align="left">Immune cells</td>
<td valign="top" align="left">Cytokine-mediated B &amp;T cell development and differentiation</td>
<td valign="top" align="center">(<xref ref-type="bibr" rid="B123">Hawkins and Stephens, 2015</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">Class IB</td>
<td valign="top" align="left">p110<bold>&#x3b3;</bold>
</td>
<td valign="top" align="left">Immune cells</td>
<td valign="top" align="left">Myeloid chemotaxis, ROS/inflammatory secretion, and phagocytosis</td>
<td valign="top" align="center">(<xref ref-type="bibr" rid="B124">Nurnberg and Beer-Hammer, 2019</xref>)</td>
</tr>
<tr>
<th valign="top" colspan="5" align="left">Class II</th>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">PI3K-C2<bold>&#x3b1;</bold>
</td>
<td valign="top" align="left">ubiquitous</td>
<td valign="top" align="left">Platelet membrane morphology, exocytosis, endocytosis and glucose transport</td>
<td valign="top" align="center">(<xref ref-type="bibr" rid="B126">Mazza and Maffucci, 2011</xref>; <xref ref-type="bibr" rid="B125">Valet et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B127">Wang et&#xa0;al., 2018</xref>)</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">PI3K-C2<bold>&#x3b2;</bold>
</td>
<td valign="top" align="left">ubiquitous</td>
<td valign="top" align="left">Clathrin-mediated pinocytosis</td>
<td valign="top" align="center">(<xref ref-type="bibr" rid="B128">Aung et&#xa0;al., 2019</xref>)</td>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">PI3K-C2<bold>&#x3b3;</bold>
</td>
<td valign="top" align="left">Liver, pancreas, and reproductive organs</td>
<td valign="top" align="left">Dynamin-independent internalization</td>
<td valign="top" align="center">(<xref ref-type="bibr" rid="B129">Krag et&#xa0;al., 2010</xref>)</td>
</tr>
<tr>
<th valign="top" colspan="5" align="left">Class III</th>
</tr>
<tr>
<td valign="top" align="left"/>
<td valign="top" align="left">Vps34</td>
<td valign="top" align="left"/>
<td valign="top" align="left">Autophagy and endocytosis</td>
<td valign="top" align="center">(<xref ref-type="bibr" rid="B130">Juhasz et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B52">Jaber et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B131">Ohashi et&#xa0;al., 2020</xref>)</td>
</tr>
</tbody>
</table>
</table-wrap>    <p>There are 4 class 1 PI3Ks isotypes that are named after their catalytic subunit proteins (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). Class 1A consists of isotypes p110<bold>&#x3b1;</bold>, p110<bold>&#x3b2;</bold>, and p110<bold>&#x3b4;</bold>, while class 1B consists of one isotype, p110<bold>&#x3b3;</bold> (<xref ref-type="bibr" rid="B18">Yang et&#xa0;al., 2019</xref>). Isotypes p110<bold>&#x3b1;</bold> and p110<bold>&#x3b2;</bold> are constitutively expressed throughout the body and have many cellular functions (<xref ref-type="bibr" rid="B46">Leahy et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B18">Yang et&#xa0;al., 2019</xref>). Conversely, PI3K isotypes p110<bold>&#x3b4;</bold> and p110<bold>&#x3b3;</bold> are only found in immune cells and they can activate or repress downstream pathways (<xref ref-type="bibr" rid="B45">Fruman et&#xa0;al., 2017</xref>). Interestingly, p110<bold>&#x3b3;</bold> are expressed in lymphocytes and are responsible for chemotaxis, making this specific PI3K isotype an excellent target for adjuvant immunotherapy to limit intracellular survival of pathogens (<xref ref-type="bibr" rid="B46">Leahy et&#xa0;al., 2012</xref>).</p>    <p>Class 2 PI3Ks have 3 isotypes: PI3K-C2<bold>&#x3b1;</bold>, PI3K-C2<bold>&#x3b2;</bold>, and PI3K-C2<bold>&#x3b3;</bold> (<xref ref-type="bibr" rid="B53">Islam et&#xa0;al., 2020</xref>) (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). Of these isotypes, PI3K-C2<bold>&#x3b1;</bold>, PI3K-C2<bold>&#x3b2;</bold> are found throughout the body, while PI3K-C2<bold>&#x3b3;</bold> has been shown to be isolated to liver, pancreas, and reproductive organs (<xref ref-type="bibr" rid="B53">Islam et&#xa0;al., 2020</xref>). Isotype Class 2 PI3Ks are responsible for glucose uptake by the liver and have a role in blood pressure regulation (<xref ref-type="bibr" rid="B54">Koch et&#xa0;al., 2021</xref>). Studies with PI3K-C2<bold>&#x3b2;</bold> knock out mice revealed that because of its role in glucose uptake, this enzyme has potential as a target for diabetes treatment (<xref ref-type="bibr" rid="B54">Koch et&#xa0;al., 2021</xref>).</p>

<p>There are 4 class 1 PI3Ks isotypes that are named after their catalytic subunit proteins (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). Class 1A consists of isotypes p110<bold>&#x3b1;</bold>, p110<bold>&#x3b2;</bold>, and p110<bold>&#x3b4;</bold>, while class 1B consists of one isotype, p110<bold>&#x3b3;</bold> (<xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>). Isotypes p110<bold>&#x3b1;</bold> and p110<bold>&#x3b2;</bold> are constitutively expressed throughout the body and have many cellular functions (<xref ref-type="bibr" rid="B63">Leahy et&#xa0;al., 2012</xref>; <xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>). Conversely, PI3K isotypes p110<bold>&#x3b4;</bold> and p110<bold>&#x3b3;</bold> are only found in immune cells and they can activate or repress downstream pathways (<xref ref-type="bibr" rid="B33">Fruman et&#xa0;al., 2017</xref>). Interestingly, p110<bold>&#x3b3;</bold> are expressed in lymphocytes and are responsible for chemotaxis, making this specific PI3K isotype an excellent target for adjuvant immunotherapy to limit intracellular survival of pathogens (<xref ref-type="bibr" rid="B63">Leahy et&#xa0;al., 2012</xref>).</p>    <p>Class 2 PI3Ks have 3 isotypes: PI3K-C2<bold>&#x3b1;</bold>, PI3K-C2<bold>&#x3b2;</bold>, and PI3K-C2<bold>&#x3b3;</bold> (<xref ref-type="bibr" rid="B49">Islam et&#xa0;al., 2020</xref>) (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). Of these isotypes, PI3K-C2<bold>&#x3b1;</bold>, PI3K-C2<bold>&#x3b2;</bold> are found throughout the body, while PI3K-C2<bold>&#x3b3;</bold> has been shown to be isolated to liver, pancreas, and reproductive organs (<xref ref-type="bibr" rid="B49">Islam et&#xa0;al., 2020</xref>). Isotype Class 2 PI3Ks are responsible for glucose uptake by the liver and have a role in blood pressure regulation (<xref ref-type="bibr" rid="B58">Koch et&#xa0;al., 2021</xref>). Studies with PI3K-C2<bold>&#x3b2;</bold> knock out mice revealed that because of its role in glucose uptake, this enzyme has potential as a target for diabetes treatment (<xref ref-type="bibr" rid="B58">Koch et&#xa0;al., 2021</xref>).</p>
<p>Class 3 has just a single isotype that is named after the catalytic subunit Vps34, with a corresponding regulatory subunit named Vsp15 (<xref ref-type="bibr" rid="B51">Jean and Kiger, 2014</xref>) (<xref ref-type="table" rid="T1">
<bold>Table&#xa0;1</bold>
</xref>). Although insulin does not affect the activity of class 3 PI3Ks, it also has promise as a target for diabetes treatment because of its role in the feedback loop of glucose homeostasis (<xref ref-type="bibr" rid="B82">Nemazanyy et&#xa0;al., 2015</xref>). Interestingly, this therapy would target the regulatory subunit, not the usual therapeutic catalytic subunit because knocking down the regulatory subunit Vsp15, not the catalytic subunit Vsp34 has been shown to increase insulin sensitivity (<xref ref-type="bibr" rid="B82">Nemazanyy et&#xa0;al., 2015</xref>).</p>
<p>Considering the ubiquitous nature of PI3Ks throughout the body, when designing therapeutics for inhibition of PI3K classes, the specific isotype and its functions must be thoroughly investigated. For infectious disease adjuvants, focusing on classes and isotypes with functions in lymphocytes would result in a more specific therapeutic effect with less unwanted side effects. Therefore, designing specific inhibitors for class 1 isotypes p110<bold>&#x3b4;</bold> and p110<bold>&#x3b3;</bold> would be ideal for this purpose. Furthermore, it would be advantageous to repurpose PI3K inhibitors as adjuvants for bacterial infections with the extensive amount of research and development into inhibitors of class 1 PI3Ks as cancer therapeutics (<xref ref-type="bibr" rid="B63">Leahy et&#xa0;al., 2012</xref>).</p>
</sec>
<sec id="s2_2">
<title>PI3K roles</title>
<p>PI3Ks are ubiquitous throughout the entire body and have been shown to be important for many physiological processes (<xref ref-type="bibr" rid="B33">Fruman et&#xa0;al., 2017</xref>). Research in the late 1980&#x2019;s revealed that PtdIns-3,4,5-P3, the product of PI3K activation is central for malignant cancerous growth (<xref ref-type="bibr" rid="B123">Whitman et&#xa0;al., 1988</xref>; <xref ref-type="bibr" rid="B4">Auger et&#xa0;al., 1989</xref>). The PI3K/AKT/mTOR pathway is dysregulated in almost all cancer types leading to uncontrolled growth (<xref ref-type="bibr" rid="B45">Hoxhaj and Manning, 2020</xref>). Specifically, activation of the PI3K pathway in cancer cells is responsible for proliferation, invasion, metastasis, and angiogenesis (<xref ref-type="bibr" rid="B95">Rascio et&#xa0;al., 2021</xref>). Since the PI3K pathway is a driver of uncontrolled growth and spread of a variety of cancers, there are currently academic and clinical efforts in place to develop PI3K, AKT, and mTOR inhibitors as cancer therapeutics (<xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B20">Castel et&#xa0;al., 2021</xref>).</p>
<p>One important role for PI3K in the liver is regulation of glucose uptake and glycogen storage (<xref ref-type="bibr" rid="B51">Jean and Kiger, 2014</xref>; <xref ref-type="bibr" rid="B58">Koch et&#xa0;al., 2021</xref>). This makes PI3Ks possible targets for to treat the symptoms of diabetes (<xref ref-type="bibr" rid="B73">Maffei et&#xa0;al., 2018</xref>). Similarly, patients with a mutation in PI3K resulting in SHORT syndrome have difficulties with glucose homeostasis mimicking type 1 diabetes (<xref ref-type="bibr" rid="B33">Fruman et&#xa0;al., 2017</xref>). However, unlike diabetes, this defect does not affect the production of insulin but the ability of insulin to activate PI3K (<xref ref-type="bibr" rid="B33">Fruman et&#xa0;al., 2017</xref>). Its role in glucose regulation makes inhibiting PI3K for cancer therapy problematic because inhibition causes a release of glucose that in turn initiates the release of insulin. The consequence of this insulin release is re-activation of PI3K in tumor cells and ineffective chemotherapy (<xref ref-type="bibr" rid="B33">Fruman et&#xa0;al., 2017</xref>). However, only certain classes and isotypes have a role in glucose metabolism and their roles are unique (<xref ref-type="bibr" rid="B73">Maffei et&#xa0;al., 2018</xref>). For example, class 2 PI3Ks are activated by insulin (<xref ref-type="bibr" rid="B58">Koch et&#xa0;al., 2021</xref>), class 3 PI3Ks are involved in glucose feedback loop (<xref ref-type="bibr" rid="B82">Nemazanyy et&#xa0;al., 2015</xref>), and class 1A PI3Ks are the isotypes responsible for glucose regulation in the liver (<xref ref-type="bibr" rid="B73">Maffei et&#xa0;al., 2018</xref>). Furthermore, class 1A isotypes p110<bold>&#x3b1;</bold> and p110<bold>&#x3b2;</bold> are the major regulators of glucose in the liver, while class 1B p110<bold>&#x3b3;</bold> regulates glucose in immune cells (<xref ref-type="bibr" rid="B73">Maffei et&#xa0;al., 2018</xref>).</p>
<p>Lastly, relevant to this review, PI3K has a major role in the innate and adaptive immune system. For professional phagocytes such as macrophages and neutrophils, PI3K plays a major role in both phagocytosis and killing of intracellular bacteria within phagosomes (<xref ref-type="bibr" rid="B37">Gillooly et&#xa0;al., 2001</xref>). Class 1A isotype p110<bold>&#x3b4;</bold> and class 1B isotype p110<bold>&#x3b3;</bold> and are the isotypes used specifically in immune cells (<xref ref-type="bibr" rid="B89">Okkenhaug, 2013</xref>). In addition to each isotype having a unique role, PI3Ks can activate or repress downstream genes depending on the cell type and associated receptor (<xref ref-type="bibr" rid="B33">Fruman et&#xa0;al., 2017</xref>). For example, class 1 Pi3Ks are involved in the phagosome cup formation, while class 3 PI3K is involved in the maturation (<xref ref-type="bibr" rid="B59">Koyasu, 2003</xref>). Specifically, class 1B isotype p110<bold>&#x3b3;</bold> allows for neutrophil migration by producing PtdIns-3,4,5-P3 at the leading edge of the cell (<xref ref-type="bibr" rid="B51">Jean and Kiger, 2014</xref>). In addition, class 1A isotype p110<bold>&#x3b4;</bold>, class 1B isotype p110<bold>&#x3b3;</bold>, and class 3 PI3K Vps34 are responsible for bacterial clearance by immune cells (<xref ref-type="bibr" rid="B109">Thi and Reiner, 2012</xref>).</p>
<p>The extensive list of roles for PI3Ks make them attractive targets for cancer therapy, immune therapy, and diabetes treatment. When looking for therapeutic alternatives to complement our classical antibiotic therapy for drug resistant bacterial infections, targeting the PI3K specific isotypes is an intriguing possibility. Combination therapy with antibiotics and isotype selective PI3K inhibitors has the potential of increasing therapeutic outcome of drug resistant bacterial infections without interfering with PI3Ks in other cell types leading to unwanted side effects.</p>
</sec>
</sec>
<sec id="s3">
<title>PI3K inhibition</title>
<p>PI3K inhibitors are an exciting target for cancer therapy because upregulation of the PI3K/AKT/mTOR pathway is present in almost all cancers (<xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>). PI3K upregulation is responsible for uncontrolled growth, increased chemotaxis, and invasiveness of cancer cells (<xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>). Since the discovery of its important role in cancer development, PI3K inhibitors have been increasingly developed and optimized (<xref ref-type="bibr" rid="B72">Macara et&#xa0;al., 1984</xref>; <xref ref-type="bibr" rid="B108">Sugimoto et&#xa0;al., 1984</xref>; <xref ref-type="bibr" rid="B124">Whitman et&#xa0;al., 1985</xref>; <xref ref-type="bibr" rid="B123">Whitman et&#xa0;al., 1988</xref>).</p>
<sec id="s3_1">
<title>Broad-spectrum inhibitors</title>
<p>In 1957 wortmannin, the first PI3K inhibitor was discovered after isolation from the fungal species <italic>Penicillium wortmannin (</italic>
<xref ref-type="bibr" rid="B25">Cleary and Shapiro, 2010</xref>
<italic>)</italic> (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2A</bold>
</xref>). Similarly, Eli Lilly developed LY294002 as a reversible broad inhibitor of PI3k (<xref ref-type="bibr" rid="B25">Cleary and Shapiro, 2010</xref>) (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2B</bold>
</xref>). The development of LY294002 was based on optimizing the naturally occurring flavonoid quercetin (<xref ref-type="fig" rid="f2">
<bold>Figure&#xa0;2C</bold>
</xref>), that can inhibit a broad range of host kinases (<xref ref-type="bibr" rid="B1">Abdul-Ghani et&#xa0;al., 2006</xref>; <xref ref-type="bibr" rid="B48">Imai et&#xa0;al., 2012</xref>). These inhibitors have been used extensively in laboratories studying the cellular functions of PI3K but due to their poor solubility and physiochemical characteristics these inhibitors have not been used therapeutically (<xref ref-type="bibr" rid="B25">Cleary and Shapiro, 2010</xref>). After the discovery of PI3K inhibitors, efforts to improve their pharmacological characteristics resulted in several new inhibitors being developed (<xref ref-type="bibr" rid="B25">Cleary and Shapiro, 2010</xref>). Many studies have worked to improve the physiochemical characteristics of wortmannin and LY294002 through analog design resulting in more stable forms of wortmannin and more soluble analogs of LY294002 (<xref ref-type="bibr" rid="B25">Cleary and Shapiro, 2010</xref>).</p>
<fig id="f2" position="float">
<label>Figure&#xa0;2</label>
<caption>
<p>Original PI3K inhibitors. The figure shows the chemical structure of the first two discovered PI3K inhibitors. <bold>(A)</bold> shows wortmannin that was discovered from <italic>Penicillium wortmannin.</italic> <bold>(B)</bold> shows the chemical structure of the synthetic LY294002 designed based on the natural flavonoid quercetin shown in <bold>(C)</bold>.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="frabi-02-1135485-g002.tif"/>
</fig>
<p>In addition to the broad inhibitors of PI3K, therapeutics have been developed with the ability to bind both PI3K and the very similar catalytic subunit of mTOR (<xref ref-type="bibr" rid="B25">Cleary and Shapiro, 2010</xref>). Although they have not yet acquired FDA approval, there are dual PI3K and mTOR inhibitors in phase 3 of clinical development increasing the effectiveness of PI3K/AKT/mTOR pathway inhibition (<xref ref-type="bibr" rid="B25">Cleary and Shapiro, 2010</xref>; <xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>). These have shown promise over therapeutics that solely inhibit mTOR, which has a negative feedback loop that activates PI3K and AKT when inhibited. However, it is uncertain at this point whether dual inhibition of both PI3K and mTOR is superior to the inhibition of PI3K alone (<xref ref-type="bibr" rid="B25">Cleary and Shapiro, 2010</xref>). In addition, multiple trials for dual inhibitors have been terminated due to low tolerability and adverse side effects (<xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>). If the tolerability can be improved, perhaps dual PI3K/mTOR inhibitors could be beneficial for cancer therapy because studies have shown PI3K to be involved in chemotherapy resistance (<xref ref-type="bibr" rid="B25">Cleary and Shapiro, 2010</xref>; <xref ref-type="bibr" rid="B35">Garber, 2014</xref>).</p>
</sec>
<sec id="s3_2">
<title>Isotype selective inhibitors</title>
<p>In recent years, isotype selective inhibitors have been more frequently pursued for development because they have been shown to have fewer side effects than broad-spectrum inhibitors (<xref ref-type="bibr" rid="B25">Cleary and Shapiro, 2010</xref>). For example, the PI3K isotype in the liver that is important for sending signals from the insulin receptor is p110<bold>&#x3b1;</bold>. Broad-spectrum PI3K inhibition can cause hyperglycemia by releasing extra glucose that in turn causes a large release of insulin (<xref ref-type="bibr" rid="B33">Fruman et&#xa0;al., 2017</xref>). Therefore, avoiding inhibition of PI3K isotype p110<bold>&#x3b1;</bold> can eliminate the hyperglycemic side effects that accompany broad PI3K inhibition (<xref ref-type="bibr" rid="B33">Fruman et&#xa0;al., 2017</xref>). In addition, it would be optimal to target specific isotypes when eliminating intracellular bacterial survival because p110<bold>&#x3b3;</bold> and p110<bold>&#x3b4;</bold> are the main PI3K isotypes for lymphocyte signaling (<xref ref-type="bibr" rid="B25">Cleary and Shapiro, 2010</xref>). This reveals great promise for avoiding unwanted side effects when using specific inhibitors to eliminate intracellular survival of bacterial pathogens.</p>
<p>Currently, there are isotype selective inhibitors that have been approved by the FDA (<xref ref-type="table" rid="T2">
<bold>Table&#xa0;2</bold>
</xref>) and others are in stage 3 clinical trials (<xref ref-type="bibr" rid="B35">Garber, 2014</xref>). Specifically, in 2014 Gilead had the first PI3K isotype selective inhibitor Zydelig&#x2122; (Idelalisib) approved by the FDA for treatment of non-Hodgkin&#x2019;s lymphoma, chronic lymphocytic leukemia, and follicular lymphoma (<xref ref-type="bibr" rid="B35">Garber, 2014</xref>). Zydelig&#x2122; is the only approved inhibitor specifically targeting the p110<bold>&#x3b4;</bold> isotype of PI3K (<xref ref-type="bibr" rid="B35">Garber, 2014</xref>; <xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>). To target PI3K p110<bold>&#x3b1;</bold>, Novartis acquired approval for Alpelisib&#x2122; (BYL719), for treatment of breast cancer (<xref ref-type="bibr" rid="B65">Lee et&#xa0;al., 2022</xref>). In addition to these very specific inhibitors, Copiktra<sup>&#xae;</sup> (Duvelisib) and Aliqopa&#x2122; (Copanlisib) that have been approved shown to inhibit both p110<bold>&#x3b3;</bold> and p110<bold>&#x3b4;</bold> isotypes (<xref ref-type="bibr" rid="B35">Garber, 2014</xref>; <xref ref-type="bibr" rid="B32">Flinn et&#xa0;al., 2019</xref>; <xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>). With these current approvals and more in various stages of clinical trials, there are many options to repurpose for adjuvant therapeutics.</p>
<table-wrap id="T2" position="float">
<label>Table&#xa0;2</label>
<caption>
<p>Approved PI3K inhibitors.</p>
</caption>
<table frame="hsides">
<thead>
<tr>
<th valign="top" align="left">Name</th>
<th valign="top" align="center">Company</th>
<th valign="top" align="center">Isotype targeted</th>
<th valign="top" align="left">Commercial name</th>
<th valign="top" align="left">Ref</th>
</tr>
</thead>
<tbody>
<tr>
<td valign="top" align="left">CAL-101/Idelalisib</td>
<td valign="top" align="left">Gilead</td>
<td valign="top" align="left">
<bold>&#x3b4;</bold>
</td>
<td valign="top" align="left">Zydelig&#x2122;</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B128">Yang et&#xa0;al., 2015</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">Bay80-6946/Copanlisib</td>
<td valign="top" align="left">Infinity</td>    <td valign="top" align="left">
<bold>&#x3b3;</bold> and <bold>&#x3b4;</bold>
</td>
<td valign="top" align="left">Aliqopa&#x2122;</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B74">Magagnoli et&#xa0;al., 2020</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">IPI-145/Duvelisib</td>
<td valign="top" align="left">Gilead</td>
<td valign="top" align="left">
<bold>&#x3b3;</bold> and <bold>&#x3b4;</bold>
</td>
<td valign="top" align="left">Copiktra<sup>&#xae;</sup>
</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B32">Flinn et&#xa0;al., 2019</xref>)</td>
</tr>
<tr>
<td valign="top" align="left">BYL719/Alpelisib</td>
<td valign="top" align="left">Novartis</td>
<td valign="top" align="left">
<bold>&#x3b1;</bold>
</td>
<td valign="top" align="left">Piqray<sup>&#xae;</sup>
</td>
<td valign="top" align="left">(<xref ref-type="bibr" rid="B12">Bogani et&#xa0;al., 2022</xref>)</td>
</tr>
</tbody>
</table>
</table-wrap>
<p>Development of p110<bold>&#x3b3;</bold> selective inhibitors has been slow because long term cancer treatment with these therapeutics can dampen the immune response to bacterial infections (<xref ref-type="bibr" rid="B129">Yang et&#xa0;al., 2019</xref>). However, acute inhibition of PI3K does not have the same effects on the immune system as long-term inhibition (<xref ref-type="bibr" rid="B2">Adefemi et&#xa0;al., 2020</xref>). Although T cell activation is inhibited, short term acute PI3K inhibition enhances the myeloid immune response to infections resulting in better infection control (<xref ref-type="bibr" rid="B2">Adefemi et&#xa0;al., 2020</xref>). Interestingly, it has been shown that chronic inflammation in elderly patients causes aberrant migration of neutrophils and PI3K inhibitors can help improve chemotaxis accuracy (<xref ref-type="bibr" rid="B101">Sapey et&#xa0;al., 2014</xref>). Aberrant neutrophil migration has also been observed in patients with severe sepsis (<xref ref-type="bibr" rid="B92">Patel et&#xa0;al., 2018</xref>). This exciting potential therapeutic application for PI3K inhibitors needs to be explored more thoroughly because the devastating mortality rates associated with sepsis (<xref ref-type="bibr" rid="B119">Vincent et&#xa0;al., 2002</xref>; <xref ref-type="bibr" rid="B31">Fleischmann-Struzek et&#xa0;al., 2020</xref>). Overall, selective inhibitors are optimal to repurpose as adjuvants for bacterial infection treatment because the PI3K isotypes used by the immune system are not ubiquitous throughout the body and the treatment length for bacterial infections is shorter than cancer therapy.</p>
</sec>
</sec>
<sec id="s4">
<title>Bacterial manipulation of PI3Ks</title>
<p>Bacterial pathogens can evade clearance by the host immune system by manipulating the cellular processes that facilitate clearance of invading organisms (<xref ref-type="bibr" rid="B93">Petit and Lebreton, 2022</xref>). There are a variety of mechanisms used by different bacterial species to survive, replicate, and hide within the host cells (<xref ref-type="bibr" rid="B75">Martinez et&#xa0;al., 2018</xref>). These virulence factors allow the pathogen to colonize and proliferate within a host organism and evade killing by antimicrobials (<xref ref-type="bibr" rid="B67">Liu et&#xa0;al., 2020</xref>; <xref ref-type="bibr" rid="B93">Petit and Lebreton, 2022</xref>). PI3Ks are targeted by many bacterial pathogens and therefore would be an advantageous target for host immune therapy and more effective treatment of chronic bacterial infections.</p>
<sec id="s4_1">
<title>Bacteria with traditional intracellular lifestyle</title>
<p>Intracellular bacteria can evade host immune clearance, reside, and replicate within macrophages and epithelial cells (<xref ref-type="bibr" rid="B127">Xue et&#xa0;al., 2010</xref>).. This ability to replicate and survive within the host is paramount to their success as a pathogen (<xref ref-type="bibr" rid="B3">Allwood et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B80">Mitchell et&#xa0;al., 2016</xref>). These pathogens are very difficult to treat because they can hide within the mammalian cells to evade antibiotic treatments (<xref ref-type="bibr" rid="B53">Kamaruzzaman et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B110">Tucker et&#xa0;al., 2021</xref>).</p>
<p><italic>Francisella tularensis</italic> is potential bioterrorism agent that causes fatal pneumoniae and no vaccine is available (<xref ref-type="bibr" rid="B76">Maurin, 2015</xref>). <italic>F. tularensis</italic> has an intracellular life cycle where it escapes from the phagosome and replicates within the macrophage cytosol (<xref ref-type="bibr" rid="B21">Celli and Zahrt, 2013</xref>; <xref ref-type="bibr" rid="B64">Ledvina et&#xa0;al., 2018</xref>) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3A</bold>
</xref>). <italic>F. tularensis</italic> uses OpiA, its own bacterial PI3K to promote bacterial escape into the cytosol and this kinase has been shown to be resistant to the fungal PI3K inhibitor wortmannin (<xref ref-type="bibr" rid="B64">Ledvina et&#xa0;al., 2018</xref>). Furthermore, it has been suggested that additional intracellular bacteria, may harbor their own bacterial PI3K to facilitate phagosomal escape because OpiA family proteins (OFP) have been found in the genomes of intracellular replicating Legionella, Vibrio, and Rickettsia genera (<xref ref-type="bibr" rid="B64">Ledvina et&#xa0;al., 2018</xref>). Another potential bioterrorism agent, <italic>Bacillus anthracis</italic> replicates in the cytosol of host cells and manipulates the host PI3Ks to allow for intracellular replication (<xref ref-type="bibr" rid="B127">Xue et&#xa0;al., 2010</xref>). <italic>B. anthracis</italic> spores invade lung epithelial cells to replicate then escape to spread the infection (<xref ref-type="bibr" rid="B127">Xue et&#xa0;al., 2010</xref>) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3B</bold>
</xref>). Xue et&#xa0;al. showed that treatment of A549 cells with the PI3K inhibitors LY294002 or wortmannin resulted in a drastic reduction in <italic>B. anthracis</italic> spore internalization, revealing the importance of PI3K activation by this species (<xref ref-type="bibr" rid="B127">Xue et&#xa0;al., 2010</xref>).</p>
<fig id="f3" position="float">
<label>Figure&#xa0;3</label>
<caption>
<p>Bacterial intracellular survival strategies manipulating PI3K. <bold>(A)</bold> shows <italic>F. tularensis</italic> escape from the phagosome using its own bacterial PI3K OpiA. This allows for subsequent cytosolic replication, macrophage apoptosis, and bacterial dissemination. <bold>(B)</bold> shows <italic>B. anthracis</italic> spore invasion of lung epithelial cell attained by manipulation of PI3K. The resulting invasion leads to spore replication and epithelial cell apoptosis. <bold>(C)</bold> shows <italic>B. pseudomallei</italic> epithelial cell invasion with subsequent macrophage uptake facilitated by hijacking of PI3K pathway. Intracellular replication then leads to multinucleated giant macrophage cells, apoptosis, and bacterial escape. <bold>(D)</bold> shows <italic>C. trachomatis</italic> elementary body (EB) invasion of genital epithelial cells facilitated by manipulation of PI3K. This results in intracellular replication of reticulate bodies (RB) and infection spread. <bold>(E)</bold> shows <italic>S. typhimurium</italic> gut epithelial cell invasion facilitated by PI3K manipulation to invade macrophages to survive and replicate within the salmonella containing vacuole (SCV) before macrophage apoptosis leads to bacterial escape. <bold>(F)</bold> shows <italic>M. tuberculosis</italic> evasion of phagosome maturation leading to replication and escape from the phagosome, necrosis induction in the macrophage, and release to infect new macrophages.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="frabi-02-1135485-g003.tif"/>
</fig>
<p>
<italic>Burkholderia pseudomallei</italic> is a U. S. Tier 1 select agent for which there is no vaccine and high mortality rates are associated with the infections (<xref ref-type="bibr" rid="B2">Adefemi et&#xa0;al., 2020</xref>). This species is a facultative intracellular pathogen that can invade and replicate in both professional phagocytes and non-phagocytic cells (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3C</bold>
</xref>) (<xref ref-type="bibr" rid="B2">Adefemi et&#xa0;al., 2020</xref>). Specifically, <italic>B. pseudomallei</italic> can invade both epithelial cells and macrophages by using PI3K to hijack the host cell actin, ultimately creating multinucleated giant cells leading to apoptosis and escape (<xref ref-type="bibr" rid="B43">Hii et&#xa0;al., 2008</xref>; <xref ref-type="bibr" rid="B94">Pflughoeft et&#xa0;al., 2019</xref>). Interestingly, Ganesan et&#xa0;al. found that treatment with chloroquine in combination with doxycycline resulted in greater murine survival from <italic>B. pseudomallei</italic> infections by inhibiting an enzyme downstream to PI3K, glycogen synthase kinase-3&#x3b2; (<xref ref-type="bibr" rid="B34">Ganesan et&#xa0;al., 2020</xref>). This study shows the therapeutic benefit of repurposing host targeting drugs as adjuvants with a common antibiotic for treatment of bacterial infections (<xref ref-type="bibr" rid="B34">Ganesan et&#xa0;al., 2020</xref>).</p>
<p>The obligate intracellular Chlamydia species ability to manipulate host cell kinases is necessary for its success and survival as a pathogen (<xref ref-type="bibr" rid="B100">Sah and Lutter, 2020</xref>). More specifically, inhibition of PI3Ks by Chlamydia species allows for cell invasion, suppression of the host apoptosis and the acquisition of nutrients necessary for survival (<xref ref-type="bibr" rid="B100">Sah and Lutter, 2020</xref>) Once inside the host cell <italic>Chlamydia trachomatis</italic> differentiates from elementary bodies to reticulate bodies within inclusions that will eventually be either extruded from the cell or released by bacterial lysis after the cells mature and differentiate back into elementary bodies (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3D</bold>
</xref>) (<xref ref-type="bibr" rid="B2">Adefemi et&#xa0;al., 2020</xref>). In <italic>C. trachomatis</italic>, an effector protein TepP can recruit and activate PI3K on membranes to initiate bacterial invasion (<xref ref-type="bibr" rid="B19">Carpenter et&#xa0;al., 2017</xref>). Interestingly, the infectious elementary bodies of <italic>C. trachomatis</italic> that spread the infection have the highest amount of TepP proteins (<xref ref-type="bibr" rid="B19">Carpenter et&#xa0;al., 2017</xref>).</p>
<p>Salmonella species are facultative intracellular pathogens that have the ability to use multiple mechanisms to invade and replicate within host cells (<xref ref-type="bibr" rid="B14">Boumart et&#xa0;al., 2014</xref>) <italic>Salmonella typhimurium</italic> manipulates PI3K to pass through the gut epithelial lining, escape through the basolateral wall, and invade macrophages to replicate within the Salmonella containing vacuole (SCV) (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3E</bold>
</xref>) (<xref ref-type="bibr" rid="B47">Hurley et&#xa0;al., 2014</xref>). These species invade non-phagocytic cells by two mechanisms: the Zipper mechanism, shared by <italic>Listeria monocytogenes</italic> and the Trigger mechanism, shared by <italic>Shigella flexneri (</italic>
<xref ref-type="bibr" rid="B14">Boumart et&#xa0;al., 2014</xref>
<italic>)</italic>. <italic>S. typhimurium</italic> manipulation of PI3K allows it to highjack macrophages, using them to disseminate the infection (<xref ref-type="bibr" rid="B36">Garcia-Gil et&#xa0;al., 2018</xref>). The <italic>S. typhimurium</italic> effector protein SopB activates PI3K pathway in B cells to facilitate survival (<xref ref-type="bibr" rid="B99">Roppenser et&#xa0;al., 2013</xref>; <xref ref-type="bibr" rid="B36">Garcia-Gil et&#xa0;al., 2018</xref>), by not allowing them to form the NLRCR4 inflammasome and fight the infection (<xref ref-type="bibr" rid="B36">Garcia-Gil et&#xa0;al., 2018</xref>).</p>
<p>
<italic>Mycobacterium tuberculosis</italic> not only survives within macrophages but replicates within the phagosome (<xref ref-type="bibr" rid="B68">Liu et&#xa0;al., 2016</xref>). <italic>M. tuberculosis</italic> uses a recombinant leucine-responsive regulatory protein (rLpr) to increase activation of PI3K <italic>via</italic> the toll-like receptor 2 (TLR-2) (<xref ref-type="bibr" rid="B68">Liu et&#xa0;al., 2016</xref>). In addition, the marker for phagolysosome fusion Rab7 is targeted by <italic>M. tuberculosis</italic>, not allowing the phagosome to mature to the late stage (<xref ref-type="bibr" rid="B83">Nguyen and Yates, 2021</xref>). Following replication within the phagosome, the phagosomal membrane is permeabilized allowing the bacteria to escape to the cytosol, triggering necrosis of the macrophage and allowing escape of <italic>M. tuberculosis</italic> to infect other macrophages (<xref ref-type="fig" rid="f3">
<bold>Figure&#xa0;3F</bold>
</xref>) (<xref ref-type="bibr" rid="B9">Behar et&#xa0;al., 2010</xref>).</p>
</sec>
<sec id="s4_2">
<title>Bacteria without traditional intracellular lifestyle</title>
<p>Some pathogens are not all traditionally considered when investigating bacterial survival within host cells (<xref ref-type="bibr" rid="B103">Sendi and Proctor, 2009</xref>; <xref ref-type="bibr" rid="B105">Silva, 2012</xref>). However, these pathogens can manipulate the immune system to their advantage to allow survival and spread of the infection (<xref ref-type="bibr" rid="B105">Silva, 2012</xref>; <xref ref-type="bibr" rid="B106">Silva and Pestana, 2013</xref>). Therefore, when considering adjuvant PI3K therapy these pathogens should also be considered potential targets.</p>
<p>
<italic>Staphylococcus aureus</italic> is a dangerous pathogen with community acquired infections easily spread due to their ability to invade healthy individuals (<xref ref-type="bibr" rid="B15">Boyle-Vavra and Daum, 2007</xref>; <xref ref-type="bibr" rid="B26">DeLeo et&#xa0;al., 2009</xref>; <xref ref-type="bibr" rid="B17">Bukharie, 2010</xref>; <xref ref-type="bibr" rid="B131">Yoong and Pier, 2010</xref>; <xref ref-type="bibr" rid="B111">Turner et&#xa0;al., 2019</xref>). Skin infections caused by <italic>S. aureus</italic> can quickly invade and disseminate leading to systemic infection with sepsis (<xref ref-type="bibr" rid="B28">Edwards et&#xa0;al., 2010</xref>). Although traditionally thought of as an extracellular pathogen, <italic>S. aureus</italic> has been shown to invade non-phagocytic mammalian cells (<xref ref-type="bibr" rid="B81">Nakagawa et&#xa0;al., 2017</xref>). For example, keratinocyte invasion by <italic>S. aureus</italic> induces lysis continued invasion of the dermis layer. When engulfed by macrophages and neutrophils partial evasion of phagolysosome killing leads to escape and dissemination of infection (<xref ref-type="bibr" rid="B90">Oviedo-Boyso et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B44">Hommes and Surewaard, 2022</xref>) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4A</bold>
</xref>). Interestingly, <italic>S. aureus</italic> internalization decreases in bovine epithelial cells when treated with PI3K inhibitors (<xref ref-type="bibr" rid="B90">Oviedo-Boyso et&#xa0;al., 2011</xref>). <italic>Escherichia coli</italic> K1 has been shown to invade endothelial cells to cross the blood brain barrier and cause bacterial meningitis (<xref ref-type="bibr" rid="B97">Reddy et&#xa0;al., 2000</xref>). <italic>E. coli</italic> has been shown to manipulate the human brain microvascular endothelial cells and force micropinocytosis (<xref ref-type="bibr" rid="B71">Loh et&#xa0;al., 2017</xref>) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4B</bold>
</xref>). Attachment to the epithelial cell lining of the blood brain barrier by <italic>E. coli</italic> activates several signaling pathways including the PI3K pathway (<xref ref-type="bibr" rid="B71">Loh et&#xa0;al., 2017</xref>).</p>
<fig id="f4" position="float">
<label>Figure&#xa0;4</label>
<caption>
<p>Manipulation of PI3K by non-traditional intracellular bacteria. <bold>(A)</bold> shows how manipulation of PI3K by <italic>S. aureus</italic> leads to invasion of keratinocytes of the dermis to spread the infection and can replicate within phagocytes in macrophages and neutrophils. <bold>(B)</bold> shows <italic>E. coli</italic> invasion of microvascular endothelial cells to pass the blood brain barrier. <bold>(C)</bold> shows how activation of PI3K by hypervirulent and classical <italic>K. pneumoniae</italic> inhibit phagolysosome fusion that usually kills non-pathogenic bacteria.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="frabi-02-1135485-g004.tif"/>
</fig>
<p>A close relative to <italic>E. coli</italic>, <italic>K. pneumoniae</italic> is historically know an extracellular pathogen, unable to survive for extended periods in intracellular compartments like its close relative <italic>E. coli</italic> (<xref ref-type="bibr" rid="B10">Belon and Blanc-Potard, 2016</xref>). However, studies have now shown that <italic>K. pneumoniae</italic> is able to survive for up to 48 hours within the vacuole once engulfed by macrophages (<xref ref-type="bibr" rid="B85">Oelschlaeger and Tall, 1997</xref>). This vacuole, named the <italic>Klebsiella</italic> containing vacuole (KCV) does not fuse with lysosomes and therefore deviates from the canonical endocytic pathway used by macrophages to clear engulfed pathogens (<xref ref-type="bibr" rid="B11">Bengoechea and Sa Pessoa, 2019</xref>) (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4C</bold>
</xref>). This lack of maturation of the phagosome also results in less activation of the adaptive immune system because less antigens are presented on the surface of macrophages (<xref ref-type="bibr" rid="B18">Cano et&#xa0;al., 2015</xref>). Although it is unclear the factor that allows <italic>K. pneumoniae</italic> to persist within the phagosome, the capsule does not appear to play a major role because both hypervirulent and classical <italic>K. pneumoniae</italic> can manipulate the PI3K pathway to stop phagosome maturation by inhibiting fusion with the lysosome compartment (<xref ref-type="fig" rid="f4">
<bold>Figure&#xa0;4C</bold>
</xref>) (<xref ref-type="bibr" rid="B18">Cano et&#xa0;al., 2015</xref>). These classical intracellular pathogens have been shown to display less intracellular survival in the presence of AKT inhibitors targeting the enzyme immediately downstream to PI3K in the PI3K/AKT/Rab14 axis (<xref ref-type="bibr" rid="B11">Bengoechea and Sa Pessoa, 2019</xref>). In addition, it has recently been revealed that <italic>K. pneumoniae</italic> manipulates PI3K through the mammalian protein SARM1 (sterile <bold>&#x3b1;</bold> and HEAT armadillo motif-containing protein) revealing a potential target upstream for future therapeutic development (<xref ref-type="bibr" rid="B30">Feriotti et&#xa0;al., 2022</xref>). With the many bacterial species that manipulate PI3K to invade the host and survive intracellularly, repurposing PI3K inhibitors to release them from their protective niches would be beneficial to allow the host immune system and antibiotics to be more effective at treating these infections.</p>
</sec>
</sec>
<sec id="s5">
<title>PI3K inhibitors as adjuvants for bacterial infections</title>
<p>With the variety of pathogens that manipulate the PI3K pathway to evade host immune killing (<xref ref-type="bibr" rid="B60">Krachler et&#xa0;al., 2011</xref>; <xref ref-type="bibr" rid="B18">Cano et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B68">Liu et&#xa0;al., 2016</xref>; <xref ref-type="bibr" rid="B62">Lacoma et&#xa0;al., 2017</xref>; <xref ref-type="bibr" rid="B36">Garcia-Gil et&#xa0;al., 2018</xref>), investigating the potential as adjuvant therapeutics to eliminate intracellular bacterial survival is important for the fight against drug resistant bacterial species. PI3K inhibitors provided in a short, acute dose can promote bacterial pathogen clearance (<xref ref-type="bibr" rid="B2">Adefemi et&#xa0;al., 2020</xref>). Using PI3K inhibitors can release the pathogens from their niches used to hide from the immune system (<xref ref-type="bibr" rid="B125">Wong et&#xa0;al., 2019</xref>) and disseminate infection (<xref ref-type="bibr" rid="B23">Chen et&#xa0;al., 2002</xref>). In combination with antibiotics, PI3K inhibitors have the potential to behave as adjuvants allowing more effective antibiotic therapy at lower doses.</p>
<sec id="s5_1">
<title>Phagolysosome fusion inhibition</title>
<p>Studies have shown that acute PI3K treatment can improve the early-stage progression of infections (<xref ref-type="bibr" rid="B2">Adefemi et&#xa0;al., 2020</xref>). Many genera of bacteria manipulate PI3K to avoid phagolysosome fusion and PI3K inhibitors allow for efficient fusion of the lysosome and bacterial clearance (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5A</bold>
</xref>). This has been used to show that PI3K/AKT inhibition can eliminate intracellular <italic>S. typhimurium</italic> and <italic>M. tuberculosis</italic> (<xref ref-type="bibr" rid="B11">Bengoechea and Sa Pessoa, 2019</xref>). Interestingly, inhibition of PI3K in <italic>M. tuberculosis</italic> by isotype specific inhibitors has the potential to decrease the characteristic late-stage infection IL-17A induced pathology by interfering with Th17 differentiation (<xref ref-type="bibr" rid="B66">Leisching, 2019</xref>). Shapira et&#xa0;al. performed high-content screening of kinase inhibitors and found inhibition of PI3K controls autophagy and apoptosis decreasing intracellular survival (<xref ref-type="bibr" rid="B104">Shapira et&#xa0;al., 2020</xref>). This effect has also been seen with the facultative intracellular <italic>K. pneumoniae</italic> that manipulates the PI3K pathway to avoid phagolysosome fusion of late-stage endosomes (<xref ref-type="bibr" rid="B18">Cano et&#xa0;al., 2015</xref>). Treatment with a PI3K inhibitor revealed a decrease in <italic>K. pneumoniae</italic> intracellular survival within macrophages (<xref ref-type="bibr" rid="B18">Cano et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B11">Bengoechea and Sa Pessoa, 2019</xref>). Inhibiting bacterial pathogen survival in host immune cells has great potential for treatment of chronic infections.</p>
<fig id="f5" position="float">
<label>Figure&#xa0;5</label>
<caption>
<p>PI3K inhibition decreases bacterial invasion and survival within host cells. The figure shows the effects of PI3K manipulation next to the effects of PI3K inhibition. <bold>(A)</bold> shows that bacterial PI3K manipulation used by <italic>S. typhimurium, M. tuberculosis and K. pneumoniae</italic> to inhibit phagolysosome fusion can be stopped by PI3K inhibitors leading to fusion and bacterial death. <bold>(B)</bold> shows how the invasion of epithelial cells by <italic>E. coli</italic> is stopped by PI3K inhibitors. <bold>(C)</bold> reveals the benefits of PI3K inhibition on the keratinocyte survival in the presence of the Enterotoxin B toxin.</p>
</caption>
<graphic mimetype="image" mime-subtype="tiff" xlink:href="frabi-02-1135485-g005.tif"/>
</fig>
</sec>
<sec id="s5_2">
<title>Decreasing invasion and survival in non-phagocytic cells</title>
<p>PI3K inhibition also has the potential to decrease bacterial invasion and survival within non-phagocytic cells like epithelial cells. Testing PI3K inhibitors when infecting intestinal cells with <italic>S. typhimurium</italic>, Huang et&#xa0;al. revealed that this species uses PI3K activation to decrease inflammation. This decreased inflammation allows <italic>S. typhimurium</italic> to survive and PI3K inhibition led to decreased bacterial survival within intestinal epithelial cells (<xref ref-type="bibr" rid="B46">Huang et&#xa0;al., 2005</xref>). Like <italic>S. typhimurium</italic>, PI3K manipulation is also important for epithelial cell invasion by <italic>Helicobacter pylori</italic> and <italic>Listeria monocytogenes</italic> revealing the potential of PI3K inhibitors for a variety of intracellular pathogens (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5B</bold>
</xref>) (<xref ref-type="bibr" rid="B13">Booth et&#xa0;al., 2003</xref>). Furthermore, the penetration of the blood brain barrier by <italic>E. coli</italic> leading to meningitis can be stopped by using PI3K inhibitors (<xref ref-type="bibr" rid="B71">Loh et&#xa0;al., 2017</xref>). These studies reveal the potential of PI3K therapeutics for non-phagocytic cells revealing a broader application for adjuvants for a variety of infections and bacterial species.</p>
</sec>
<sec id="s5_3">
<title>Rescuing from toxic effects of bacterial infections</title>
<p>PI3K inhibitors have also shown promise in treating pathogens that do not have a true intracellular stage (<xref ref-type="bibr" rid="B123">Whitman et&#xa0;al., 1988</xref>; <xref ref-type="bibr" rid="B18">Cano et&#xa0;al., 2015</xref>; <xref ref-type="bibr" rid="B130">Yang et&#xa0;al., 2019</xref>). With these infections, inflammation and toxic damage can be mitigated by using PI3K inhibitors. For example, the natural PI3K inhibitor deguelin reduces Staphylococcal Enterotoxin B induction of T-cell proliferation toxicity (<xref ref-type="bibr" rid="B122">Whitfeild SJ et&#xa0;al., 2017</xref>) (<xref ref-type="fig" rid="f5">
<bold>Figure&#xa0;5C</bold>
</xref>). However, more work is needed to understand all the potential effects of PI3K treatment for bacterial infections. For example, the treatment of an <italic>E. coli</italic> induced endotoxemic mice with PI3K inhibitors lead to a decrease in mouse survival because of increased LPS-induced inflammation (<xref ref-type="bibr" rid="B102">Schabbauer et&#xa0;al., 2004</xref>). This data reveal that PI3K inhibitors can also be repurposed to protect from the effects of bacterial toxins during infection but much research is needed to pursue these applications.</p>
</sec>
</sec>
<sec id="s6" sec-type="conclusions">
<title>Conclusions</title>
<p>This review provides an overview of the role of PI3K pathway in intracellular bacterial survival and how repurposing PI3K inhibitors can potentially help eliminate these difficult to treat bacterial infections. PI3K inhibition in combination with antibiotics and the host immune system can lead to more effective treatment of many bacterial infections. However, much research is needed to explore the potential of PI3K inhibitors as adjuvant therapeutics for intracellular bacterial pathogens.</p>
</sec>
<sec id="s7" sec-type="author-contributions">
<title>Author contributions</title>
<p>The review design, writing, figures, and editing was performed by RF.</p>
</sec>
</body>
<back>
<sec id="s8" sec-type="funding-information">
<title>Funding</title>
<p>K99AI163295 to RF.</p>
</sec>
<sec id="s9" sec-type="COI-statement">
<title>Conflict of interest</title>
<p>The author declares that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10" sec-type="disclaimer">
<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
</sec>
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