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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Front. Aging Neurosci.</journal-id>
<journal-title>Frontiers in Aging Neuroscience</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Front. Aging Neurosci.</abbrev-journal-title>
<issn pub-type="epub">1663-4365</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
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<article-meta>
<article-id pub-id-type="doi">10.3389/fnagi.2024.1367106</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Aging Neuroscience</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Two-sample Mendelian randomization analysis of 91 circulating inflammatory protein levels and amyotrophic lateral sclerosis</article-title>
</title-group>
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<name><surname>Xiao</surname> <given-names>Chenxu</given-names></name>
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<name><surname>Gu</surname> <given-names>Xiaochu</given-names></name>
<xref ref-type="aff" rid="aff2"><sup>2</sup></xref>
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<name><surname>Feng</surname> <given-names>Yu</given-names></name>
<xref ref-type="aff" rid="aff3"><sup>3</sup></xref>
<xref ref-type="aff" rid="aff4"><sup>4</sup></xref>
<xref ref-type="author-notes" rid="fn0003"><sup>&#x2020;</sup></xref>
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<name><surname>Shen</surname> <given-names>Jing</given-names></name>
<xref ref-type="aff" rid="aff1"><sup>1</sup></xref>
<xref ref-type="corresp" rid="c001"><sup>&#x002A;</sup></xref>
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<aff id="aff1"><sup>1</sup><institution>The Affiliated Jiangsu Shengze Hospital of Nanjing Medical University</institution>, <addr-line>Suzhou</addr-line>, <country>China</country></aff>
<aff id="aff2"><sup>2</sup><institution>Medical Laboratory, Suzhou Psychiatric Hospital, The Affiliated Guangji Hospital of Soochow University</institution>, <addr-line>Suzhou</addr-line>, <country>China</country></aff>
<aff id="aff3"><sup>3</sup><institution>The University of New South Wales</institution>, <addr-line>Kensington, NSW</addr-line>, <country>Australia</country></aff>
<aff id="aff4"><sup>4</sup><institution>The University of Melbourne</institution>, <addr-line>Parkville, VIC</addr-line>, <country>Australia</country></aff>
<author-notes>
<fn fn-type="edited-by" id="fn0004">
<p>Edited by: Robert Weissert, University of Regensburg, Germany</p>
</fn>
<fn fn-type="edited-by" id="fn0005">
<p>Reviewed by: Deepti Lall, Cedars Sinai Medical Center, United States</p>
<p>Fuyi Xu, University of Tennessee Health Science Center (UTHSC), United States</p>
</fn>
<corresp id="c001">&#x002A;Correspondence: Jing Shen, <email>165344440@qq.com</email></corresp>
<fn fn-type="equal" id="fn0003">
<p><sup>&#x2020;</sup>These authors have contributed equally to this work and share first authorship</p>
</fn>
</author-notes>
<pub-date pub-type="epub">
<day>27</day>
<month>03</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>16</volume>
<elocation-id>1367106</elocation-id>
<history>
<date date-type="received">
<day>09</day>
<month>01</month>
<year>2024</year>
</date>
<date date-type="accepted">
<day>18</day>
<month>03</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#x00A9; 2024 Xiao, Gu, Feng and Shen.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Xiao, Gu, Feng and Shen</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<sec>
<title>Introduction</title>
<p>Amyotrophic Lateral Sclerosis (ALS) is a neurodegenerative disease with poorly understood pathophysiology. Recent studies have highlighted systemic inflammation, especially the role of circulating inflammatory proteins, in ALS.</p>
</sec>
<sec>
<title>Methods</title>
<p>This study investigates the potential causal link between these proteins and ALS. We employed a two-sample Mendelian Randomization(MR) approach, analyzing data from large-scale genome-wide association studies to explore the relationship between 91 circulating inflammatory proteins and ALS. This included various MR methods like MR Egger, weighted median, and inverse-variance weighted, complemented by sensitivity analyses for robust results.</p>
</sec>
<sec>
<title>Results</title>
<p>Significant associations were observed between levels of inflammatory proteins, including Adenosine Deaminase, Interleukin-17C, Oncostatin-M, Leukemia Inhibitory Factor Receptor, and Osteoprotegerin, and ALS risk. Consistencies were noted across different <italic>P</italic>-value thresholds. Bidirectional MR suggested that ALS risk might influence levels of certain inflammatory proteins.</p>
</sec>
<sec>
<title>Discussion</title>
<p>Our findings, via MR analysis, indicate a potential causal relationship between circulating inflammatory proteins and ALS. This sheds new light on ALS pathophysiology and suggests possible therapeutic targets. Further research is required to confirm these results and understand the specific roles of these proteins in ALS.</p>
</sec>
</abstract>
<kwd-group>
<kwd>amyotrophic lateral sclerosis</kwd>
<kwd>circulating inflammatory protein</kwd>
<kwd>two-sample mendelian randomization</kwd>
<kwd>osteoprotegerin</kwd>
<kwd>tumor necrosis factor</kwd>
</kwd-group>
<counts>
<fig-count count="9"/>
<table-count count="0"/>
<equation-count count="0"/>
<ref-count count="53"/>
<page-count count="10"/>
<word-count count="6138"/>
</counts>
<custom-meta-wrap>
<custom-meta>
<meta-name>section-at-acceptance</meta-name>
<meta-value>Parkinson&#x2019;s Disease and Aging-related Movement Disorders</meta-value>
</custom-meta>
</custom-meta-wrap>
</article-meta>
</front>
<body>
<sec sec-type="intro" id="sec1">
<label>1</label>
<title>Introduction</title>
<p>Amyotrophic Lateral Sclerosis (ALS), also known as Lou Gehrig&#x2019;s disease, is a neurodegenerative condition that primarily affects motor neurons. This disease is characterized by the progressive degeneration of motor neurons, leading to fatal paralysis. ALS manifests in two forms: familial and sporadic, differentiated by family history. Despite significant research efforts, the underlying pathogenesis of ALS remains elusive, and effective treatments are scarce (<xref ref-type="bibr" rid="ref32">Ralli et al., 2019</xref>; <xref ref-type="bibr" rid="ref25">Masrori and Van Damme, 2020</xref>; <xref ref-type="bibr" rid="ref50">Yang et al., 2021</xref>).</p>
<p>In the last decade, substantial progress has been made in understanding the genetic architecture, pathophysiological mechanisms, and potential biomarkers of ALS (<xref ref-type="bibr" rid="ref50">Yang et al., 2021</xref>; <xref ref-type="bibr" rid="ref47">Witzel et al., 2022</xref>; <xref ref-type="bibr" rid="ref26">Mead et al., 2023</xref>). These advancements have opened new avenues for therapeutic intervention, particularly in the domain of neuroinflammation, which is increasingly associated with ALS. Recent focus in ALS research has centered on systemic inflammation, especially the role of circulating inflammatory proteins (<xref ref-type="bibr" rid="ref16">Henkel et al., 2004</xref>; <xref ref-type="bibr" rid="ref27">Murdock et al., 2015</xref>; <xref ref-type="bibr" rid="ref53">Zondler et al., 2016</xref>). Studies have linked proteins like PIKFYVE kinase and TDP-43 to neuronal damage in ALS, associating their inhibition or misfolding with neuronal injury (<xref ref-type="bibr" rid="ref12">Gleixner et al., 2022</xref>; <xref ref-type="bibr" rid="ref36">Shao et al., 2022</xref>; <xref ref-type="bibr" rid="ref41">Tejwani et al., 2023</xref>). This growing body of evidence underscores the importance of these proteins as both biomarkers and potential therapeutic targets (<xref ref-type="bibr" rid="ref2">Akiyama et al., 2022</xref>; <xref ref-type="bibr" rid="ref20">Jiang et al., 2022</xref>; <xref ref-type="bibr" rid="ref17">Hosaka et al., 2023</xref>).</p>
<p>Concurrently, the application of bioinformatics, molecular biology, and genetics in ALS research has significantly enhanced our understanding of the disease&#x2019;s complexity (<xref ref-type="bibr" rid="ref34">Sankaran et al., 2021</xref>; <xref ref-type="bibr" rid="ref8">Carroll, 2022</xref>; <xref ref-type="bibr" rid="ref35">Sari et al., 2022</xref>). Innovations in these fields have led to the identification of new genetic and molecular pathways in ALS, laying the groundwork for targeted therapies (<xref ref-type="bibr" rid="ref22">Lehrach et al., 2011</xref>; <xref ref-type="bibr" rid="ref1">Akinduro et al., 2021</xref>; <xref ref-type="bibr" rid="ref48">Wu and Lin, 2022</xref>). One key methodology employed in this context is Mendelian Randomization (MR). MR leverages genetic variations as instrumental variables to establish causal relationships between exposures (inflammatory proteins) and outcomes (ALS), thus enhancing the credibility of causal inferences drawn from observational studies by reducing common confounders and reverse causation (<xref ref-type="bibr" rid="ref38">Song et al., 2022</xref>; <xref ref-type="bibr" rid="ref21">Lee et al., 2023</xref>; <xref ref-type="bibr" rid="ref24">Liu et al., 2023</xref>; <xref ref-type="bibr" rid="ref31">Rajasundaram and Gill, 2023</xref>).</p>
<p>Our study employs a two-sample MR approach, utilizing multiple <italic>p</italic>-value thresholds to increase the accuracy of our findings while acknowledging the trade-offs involved. Lower <italic>p</italic>-values, such as &#x003C;5.0E&#x2212;08, are typically used to ensure robustness of associations, reduce heterogeneity, and improve study precision. However, such stringent criteria may also exclude potentially meaningful associations. Therefore, by adopting different <italic>p</italic>-value thresholds, our analysis aims to strike a balance between minimizing false positives and not overlooking significant associations that could be crucial for understanding the pathophysiology of ALS (<xref ref-type="bibr" rid="ref23">Liu et al., 2023</xref>; <xref ref-type="bibr" rid="ref40">Soremekun et al., 2023</xref>).</p>
</sec>
<sec sec-type="methods" id="sec2">
<label>2</label>
<title>Methods</title>
<p>The research process is illustrated in the flowchart figure (<xref ref-type="fig" rid="fig1">Figure 1</xref>).</p>
<fig position="float" id="fig1">
<label>Figure 1</label>
<caption>
<p>Flowchart figure.</p>
</caption>
<graphic xlink:href="fnagi-16-1367106-g001.tif"/>
</fig>
<sec id="sec3">
<label>2.1</label>
<title>Data sources</title>
<p>Data on 91 circulating inflammatory proteins were sourced from GWAS data measured using the Olink Target Inflammation panel across 11 cohorts, involving a total of 14,824 European ancestry participants (<xref ref-type="bibr" rid="ref52">Zhao et al., 2023</xref>). Data on Amyotrophic Lateral Sclerosis were derived from a meta-analysis of GWAS by van Rheenen et al., &#x201C;GCST90027164&#x201D;,<xref ref-type="fn" rid="fn0001"><sup>1</sup></xref> including 27,205 ALS cases and 110,881 European ancestry controls (<xref ref-type="bibr" rid="ref44">van Rheenen et al., 2021</xref>) (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>). The ALS validation group comprises two GWAS datasets curated by van Rheenen and Nicolas. The initial dataset consists of sporadic ALS cases, while the validation sets include one sporadic ALS dataset and another dataset that does not differentiate between familial or sporadic ALS (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table S1</xref>). Specific details regarding data curation are thoroughly explained in the original articles.</p>
</sec>
<sec id="sec4">
<label>2.2</label>
<title>Mendelian randomization</title>
<p>We utilized a two-sample MR (TSMR) analysis to explore the causal relationship between circulating inflammatory proteins and ALS. In our MR analysis, inflammatory proteins were the exposure of interest, ALS was the outcome, and SNPs were used as instrumental variables. The TSMR approach was based on the following assumptions: (I) instrumental variables are closely associated with the risk of inflammatory proteins; (II) instrumental variables affect ALS risk only through their impact on inflammatory proteins; (III) instrumental variables are independent of confounding factors (<xref ref-type="bibr" rid="ref10">Davey Smith and Hemani, 2014</xref>).</p>
<p>We selected SNPs associated with inflammatory proteins across the whole genome (<italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;8</sup>), (<italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;7</sup>), and (<italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;6</sup>) for forward TSMR analysis. For reverse TSMR analysis of ALS GWAS instrumental variables, we used SNPs (<italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;8</sup>). Additionally, PLINK clumping was employed to calculate linkage disequilibrium between each exposure&#x2019;s SNPs on the basis of the 1,000 Genomes European panel, using an <italic>r</italic><sup>2</sup>&#x2009;&#x003C;&#x2009;0.01 (clumping distance&#x2009;=&#x2009;5,000&#x2009;kb) as the threshold for SNPs in linkage equilibrium. The <italic>F</italic>-statistic was calculated using <italic>F</italic>&#x2009;=&#x2009;beta<sup>2</sup>/se<sup>2</sup>, with all <italic>F</italic>-statistics &#x003E;10, indicating robustness of the instrumental variables.</p>
<p>Several MR methods were used, including MR Egger, weighted median, IVW, Wald ratio, simple mode, and weighted mode. IVW was selected as the primary analysis method, using Wald ratio when snp&#x2009;&#x003C;&#x2009;2, with a <italic>p</italic>-value &#x003C;0.05 considered significant (<xref ref-type="bibr" rid="ref7">Burgess et al., 2013</xref>; <xref ref-type="bibr" rid="ref45">Verbanck et al., 2018</xref>). Cochran&#x2019;s <italic>Q</italic> statistic was used to assess heterogeneity between individual SNPs. If no significant heterogeneity was observed (<italic>p</italic>&#x2009;&#x003C;&#x2009;0.05), a fixed-effect model was adopted (<xref ref-type="bibr" rid="ref15">Hemani et al., 2018</xref>); otherwise, the causal significance relationship needed cautious interpretation. Sensitivity analyses were also conducted to verify the robustness of our results. Furthermore, MR-Egger and MR-PRESSO methods were employed to determine the presence of pleiotropy. The intercept obtained from MR-Egger regression was used to measure directional pleiotropy, and MR-PRESSO was used for enhanced detection of pleiotropy (<xref ref-type="bibr" rid="ref6">Bowden et al., 2016</xref>). Steiger testing was performed to determine the direction of causality. Leave-one-out sensitivity analysis was conducted to determine whether individual SNPs had a significant impact on MR results.</p>
</sec>
<sec id="sec5">
<label>2.3</label>
<title>Statistical software</title>
<p>All statistical analyses were performed using R software version 4.3.0.<xref ref-type="fn" rid="fn0002"><sup>2</sup></xref> MR analysis and Steiger filtering were performed using the &#x201C;TwoSampleMR&#x201D; R package (<xref ref-type="bibr" rid="ref37">Smith and Ebrahim, 2003</xref>; <xref ref-type="bibr" rid="ref11">Emdin et al., 2017</xref>; <xref ref-type="bibr" rid="ref42">The Telomeres Mendelian Randomization Collaboration et al., 2017</xref>). MR-PRESSO was carried out using the &#x201C;MRPRESSO&#x201D; R package.</p>
</sec>
<sec id="sec6">
<label>2.4</label>
<title>Selection of external datasets for validation</title>
<p>During the initial exploration phase of the study, we refrained from using <italic>p</italic>-value correction to capture more potential associations. To ensure the reliability of our preliminary results, we chose to validate them using two external datasets. One dataset focuses on sporadic ALS, while the other does not distinguish between familial or sporadic ALS. By including both sporadic ALS and non-differentiated familial or sporadic ALS datasets, we can comprehensively assess the generalizability of our findings. In the preliminary screening process, we incorporated potentially key proteins previously identified, including 12 inflammation-related proteins. By utilizing these datasets, we are able to validate the associations observed in our study (<xref ref-type="bibr" rid="ref43">van Rheenen et al., 2016</xref>; <xref ref-type="bibr" rid="ref28">Nicolas et al., 2018</xref>).</p>
</sec>
</sec>
<sec sec-type="results" id="sec7">
<label>3</label>
<title>Results</title>
<sec id="sec8">
<label>3.1</label>
<title>Forward Mendelian randomization results</title>
<p>Using the threshold of SNPs (<italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;8</sup>), instrumental variables were extracted for 73 inflammatory proteins for TSMR analysis. The results indicated that increased levels of Adenosine Deaminase are associated with a higher risk of ALS (OR&#x2009;=&#x2009;1.068, PIVW&#x2009;=&#x2009;0.048). This analysis showed no significant heterogeneity (MR Egger <italic>Q</italic>&#x2009;=&#x2009;5.658, <italic>Q p</italic>-value&#x2009;=&#x2009;0.059) and no horizontal pleiotropy (<italic>P</italic> Egger Intercept&#x2009;=&#x2009;0.806, <italic>P</italic> MR Presso&#x2009;=&#x2009;0.361). An increase in Interleukin-17C levels was also found to increase ALS risk (OR&#x2009;=&#x2009;1.199, PIVW&#x2009;=&#x2009;0.047) (SNPs &#x003C;3). Higher Oncostatin-M levels were associated with a decreased risk of ALS (OR&#x2009;=&#x2009;0.84, PIVW&#x2009;=&#x2009;0.016), with the analysis showing no significant heterogeneity (MR Egger <italic>Q</italic>&#x2009;=&#x2009;0.359, <italic>Q p</italic>-value&#x2009;=&#x2009;0.836) and no horizontal pleiotropy (<italic>P</italic> Egger Intercept&#x2009;=&#x2009;0.596, <italic>P</italic> MR Presso&#x2009;=&#x2009;0.864). Increased levels of Leukemia inhibitory factor receptor were associated with a decreased risk of ALS (OR&#x2009;=&#x2009;0.903, PIVW&#x2009;=&#x2009;0.017), with no significant heterogeneity (MR Egger <italic>Q</italic>&#x2009;=&#x2009;2.064, <italic>Q p</italic>-value&#x2009;=&#x2009;0.151) or horizontal pleiotropy (<italic>P</italic> Egger Intercept&#x2009;=&#x2009;0.913) observed (<xref ref-type="fig" rid="fig2">Figure 2</xref>) (<xref ref-type="supplementary-material" rid="SM1">Supplementary Tables S2, S3, S8</xref>).</p>
<fig position="float" id="fig2">
<label>Figure 2</label>
<caption>
<p>Adopt a significance threshold for selecting SNPs of <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;8</sup>. In this Mendelian randomization analysis, inflammatory proteins are analyzed as the exposure factor, with ALS as the resultant outcome. Significant findings are denoted by a P_IVW value less than 0.05.</p>
</caption>
<graphic xlink:href="fnagi-16-1367106-g002.tif"/>
</fig>
<p>Due to the initial selection criteria, some proteins did not yield SNPs, leading us to relax the conditions. We selected SNPs with a threshold of <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;7</sup> as instrumental variables, and conducted TSMR analysis on 86 inflammatory proteins. The results revealed the following:</p>
<p>Adenosine Deaminase Levels: an increase in Adenosine Deaminase levels was associated with an increased risk of ALS (OR&#x2009;=&#x2009;1.07, PIVW&#x2009;=&#x2009;0.025). The analysis showed no significant heterogeneity (MR Egger <italic>Q</italic>&#x2009;=&#x2009;6.654, <italic>Q p</italic>-value&#x2009;=&#x2009;0.084) and no evidence of horizontal pleiotropy (<italic>P</italic> Egger Intercept&#x2009;=&#x2009;0.820, <italic>P</italic> MR Presso&#x2009;=&#x2009;0.339).</p>
<p>Interleukin-5 Levels: higher levels of Interleukin-5 were also linked to an increased risk of ALS (OR&#x2009;=&#x2009;1.5, PIVW&#x2009;=&#x2009;0.015), with fewer than three SNPs involved.</p>
<p>SIR2-like Protein 2 Levels: an elevation in SIR2-like protein 2 levels was correlated with an increased risk of ALS (OR&#x2009;=&#x2009;1.24, PIVW&#x2009;=&#x2009;0.024), again with fewer than three SNPs.</p>
<p>Neurturin Levels: increased levels of Neurturin were found to raise the risk of ALS (OR&#x2009;=&#x2009;1.237, PIVW&#x2009;=&#x2009;0.040), with fewer than three SNPs.</p>
<p>Leukemia Inhibitory Factor Receptor Levels: conversely, an increase in Leukemia inhibitory factor receptor levels was associated with a decreased risk of ALS (OR&#x2009;=&#x2009;0.912, PIVW&#x2009;=&#x2009;0.029). This analysis also showed no significant heterogeneity (MR Egger <italic>Q</italic>&#x2009;=&#x2009;2.966, <italic>Q p</italic>-value&#x2009;=&#x2009;0.227) and no horizontal pleiotropy (<italic>P</italic> Egger Intercept&#x2009;=&#x2009;0.713, <italic>P</italic> MR Presso&#x2009;=&#x2009;0.566).</p>
<p>Osteoprotegerin Levels: higher levels of Osteoprotegerin were linked to a reduced risk of ALS (OR&#x2009;=&#x2009;0.89, PIVW&#x2009;=&#x2009;0.020). The analysis indicated no significant heterogeneity (MR Egger <italic>Q</italic>&#x2009;=&#x2009;16.163, <italic>Q p</italic>-value&#x2009;=&#x2009;0.064) and no horizontal pleiotropy (<italic>P</italic> Egger Intercept&#x2009;=&#x2009;0.979, <italic>P</italic> MR Presso&#x2009;=&#x2009;0.118) (<xref ref-type="fig" rid="fig3">Figure 3</xref>) (<xref ref-type="supplementary-material" rid="SM1">Supplementary Tables S2, S4, S9</xref>).</p>
<fig position="float" id="fig3">
<label>Figure 3</label>
<caption>
<p>Adopt a significance threshold for selecting SNPs of <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;7</sup>. In this Mendelian randomization analysis, inflammatory proteins are analyzed as the exposure factor, with ALS as the resultant outcome. Significant findings are denoted by a P_IVW value less than 0.05.</p>
</caption>
<graphic xlink:href="fnagi-16-1367106-g003.tif"/>
</fig>
<p>In an effort to include more inflammatory proteins, the criteria were adjusted by setting the SNP threshold to <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;6</sup>. This enabled the extraction of instrumental variables for all 91 inflammatory proteins, which were then analyzed using TSMR. The findings were as follows:</p>
<p>ADA (Adenosine Deaminase) Levels: an increase in ADA levels was associated with an increased risk of ALS (OR&#x2009;=&#x2009;1.072, PIVW&#x2009;=&#x2009;0.037). This analysis indicated the presence of heterogeneity (MR Egger <italic>Q</italic>&#x2009;=&#x2009;29.224, <italic>Q p</italic>-value&#x2009;=&#x2009;0.004) and no evidence of horizontal pleiotropy (<italic>P</italic> Egger Intercept&#x2009;=&#x2009;0.735, <italic>P</italic> MR Presso&#x2009;=&#x2009;0.389).</p>
<p>TNF-beta Levels: elevated TNF-beta levels were associated with a reduced risk of ALS (OR&#x2009;=&#x2009;0.951, PIVW&#x2009;=&#x2009;0.012). The analysis showed heterogeneity (MR Egger <italic>Q</italic>&#x2009;=&#x2009;34.518, <italic>Q p</italic>-value&#x2009;=&#x2009;0.184) and no horizontal pleiotropy (<italic>p</italic>&#x2009;=&#x2009;0.454, <italic>P</italic> MR Presso&#x2009;=&#x2009;0.723).</p>
<p>Osteoprotegerin Levels: an increase in Osteoprotegerin levels was linked to a decreased risk of ALS (OR&#x2009;=&#x2009;0.916, PIVW&#x2009;=&#x2009;0.031). The analysis did not show significant heterogeneity (MR Egger <italic>Q</italic>&#x2009;=&#x2009;27.915, <italic>Q p</italic>-value&#x2009;=&#x2009;0.085) and no horizontal pleiotropy was found (<italic>P</italic> Egger Intercept&#x2009;=&#x2009;0.440, <italic>P</italic> MR Presso&#x2009;=&#x2009;0.125).</p>
<p>Interleukin-10 Levels: higher levels of Interleukin-10 were associated with a decreased risk of ALS (OR&#x2009;=&#x2009;0.901, PIVW&#x2009;=&#x2009;0.011). This analysis indicated no significant heterogeneity (MR Egger <italic>Q</italic>&#x2009;=&#x2009;11.062, <italic>Q p</italic>-value&#x2009;=&#x2009;0.853) and no horizontal pleiotropy (<italic>P</italic> Egger Intercept&#x2009;=&#x2009;0.751, <italic>P</italic> MR Presso&#x2009;=&#x2009;0.056) (<xref ref-type="fig" rid="fig4">Figure 4</xref>) (<xref ref-type="supplementary-material" rid="SM1">Supplementary Tables S2, S5, S10</xref>).</p>
<fig position="float" id="fig4">
<label>Figure 4</label>
<caption>
<p>Adopt a significance threshold for selecting SNPs of <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;6</sup>. In this Mendelian randomization analysis, inflammatory proteins are analyzed as the exposure factor, with ALS as the resultant outcome. Significant findings are denoted by a P_IVW value less than 0.05.</p>
</caption>
<graphic xlink:href="fnagi-16-1367106-g004.tif"/>
</fig>
<p>From the three sets of analyses conducted, we can draw several conclusions:</p>
<p>ADA Levels: an increase in ADA levels was found to heighten the risk of ALS. This finding was significant across all three sets of analyses (<italic>P</italic> IVW&#x2009;&#x003C;&#x2009;0.05). Although there was heterogeneity in the results with the threshold at <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;6</sup>, the IVW results were relatively stable.</p>
<p>Leukemia Inhibitory Factor Receptor Levels: higher levels of the Leukemia inhibitory factor receptor were associated with a decreased risk of ALS. This was significantly observed in the first two sets of analyses (<italic>P</italic> IVW&#x2009;&#x003C;&#x2009;0.05).</p>
<p>Osteoprotegerin Levels: an increase in Osteoprotegerin levels also appeared to reduce the risk of ALS. This outcome was significant in the latter two sets of analyses (<italic>P</italic> IVW&#x2009;&#x003C;&#x2009;0.05).</p>
<p>Next, we conducted a leave-one-out analysis on the three key results mentioned above. This involved sequentially excluding each SNP and estimating the effect sizes for the remaining SNPs. For both Leukemia inhibitory factor receptor levels and Osteoprotegerin levels, the analysis showed no significant difference in effect size before and after exclusion, indicating that no single SNP had a significant impact on the MR estimates. However, in the three sets of analyses for ADA levels, the exclusion of the SNP &#x201C;rs112665079&#x201D; led to a deviation in results, suggesting that rs112665079 has a significant influence on the MR estimation results (<xref ref-type="fig" rid="fig5">Figure 5</xref>) (<xref ref-type="supplementary-material" rid="SM1">Supplementary Table S7</xref>).</p>
<fig position="float" id="fig5">
<label>Figure 5</label>
<caption>
<p>Displays the leave-one-out analysis results using the IVW method, assessing the impact of individual SNPs on the overall MR findings by sequentially excluding each SNP. The <italic>Y</italic>-axis corresponds to each excluded rsID and the aggregate IVW method result without any SNP exclusions. The <italic>X</italic>-axis represents the specific IVW values, where black and red dots denote beta effect values, and the lines indicate the confidence intervals of the beta values. Specifically, <bold>(A,B)</bold> illustrate the leukemia inhibitory factor receptor levels as the exposure, with SNP thresholds set at <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;8</sup> and <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;7</sup>, respectively. <bold>(C,D)</bold> focus on osteoprotegerin levels as the exposure, applying SNP thresholds of <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;7</sup> and <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;6</sup>. Finally, the levels of adenosine deaminase as the exposure factor are examined in <bold>(E&#x2013;G)</bold>, with SNP thresholds set at <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;8</sup>, <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;7</sup>, and <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;6</sup>, respectively.</p>
</caption>
<graphic xlink:href="fnagi-16-1367106-g005.tif"/>
</fig>
<p>After excluding rs112665079 and reanalyzing TSMR with ADA levels as the exposure and ALS as the outcome, the results were contrary to the previous findings, showing no significant correlation. This indeed demonstrates the significant impact of rs112665079 on the MR estimation results (<xref ref-type="fig" rid="fig6">Figure 6</xref>).</p>
<fig position="float" id="fig6">
<label>Figure 6</label>
<caption>
<p>MR Results with Adenosine Deaminase Correction. SNP selection thresholds are applied with <italic>p</italic>-values &#x003C;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;8</sup>, <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;7</sup>, and <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;6</sup>, respectively. Adenosine Deaminase protein is considered as the exposure factor, and ALS as the outcome in the Mendelian randomization analysis.</p>
</caption>
<graphic xlink:href="fnagi-16-1367106-g006.tif"/>
</fig>
</sec>
<sec id="sec9">
<label>3.2</label>
<title>Reverse Mendelian randomization results</title>
<p>In the reverse Mendelian randomization analysis involving ALS and 91 inflammatory proteins, the following results were obtained:</p>
<p>C-C Motif Chemokine 20 Levels: an increase in the risk of ALS was associated with elevated levels of C-C motif chemokine 20 (OR&#x2009;=&#x2009;1.089, PIVW&#x2009;=&#x2009;0.020). The analysis showed no significant heterogeneity (MR Egger <italic>Q</italic>&#x2009;=&#x2009;9.884, <italic>Q p</italic>-value&#x2009;=&#x2009;0.626) and no horizontal pleiotropy (<italic>P</italic> Egger Intercept&#x2009;=&#x2009;0.742, <italic>P</italic> MR Presso&#x2009;=&#x2009;0.725).</p>
<p>Tumor Necrosis Factor Ligand Superfamily Member 12 Levels: similarly, an increased risk of ALS was associated with higher levels of Tumor necrosis factor ligand superfamily member 12 (OR&#x2009;=&#x2009;1.097, PIVW&#x2009;=&#x2009;0.010). No significant heterogeneity was observed in this analysis (MR Egger <italic>Q</italic>&#x2009;=&#x2009;7.787, <italic>Q p</italic>-value&#x2009;=&#x2009;0.802), and there was no evidence of horizontal pleiotropy (<italic>P</italic> Egger Intercept&#x2009;=&#x2009;0.127, <italic>P</italic> MR Presso&#x2009;=&#x2009;0.586).</p>
<p>Interleukin-5 Levels: in contrast, an increased risk of ALS was associated with decreased levels of Interleukin-5 (OR&#x2009;=&#x2009;0.915, PIVW&#x2009;=&#x2009;0.031). This analysis also showed no significant heterogeneity (MR Egger <italic>Q</italic>&#x2009;=&#x2009;10.272, <italic>Q p</italic>-value&#x2009;=&#x2009;0.592) and no horizontal pleiotropy (<italic>P</italic> Egger Intercept&#x2009;=&#x2009;0.898, <italic>P</italic> MR Presso&#x2009;=&#x2009;0.686) (<xref ref-type="fig" rid="fig7">Figure 7</xref>).</p>
<fig position="float" id="fig7">
<label>Figure 7</label>
<caption>
<p>Reverse MR Results. Mendelian randomization analysis with ALS as the exposure factor and inflammatory proteins as the outcome, considering significance with p_ivw&#x2009;&#x003C;&#x2009;0.05.</p>
</caption>
<graphic xlink:href="fnagi-16-1367106-g007.tif"/>
</fig>
<p>A sensitivity analysis using the leave-one-out approach demonstrated robust results (<xref ref-type="fig" rid="fig8">Figure 8</xref>) (<xref ref-type="supplementary-material" rid="SM1">Supplementary Tables S2, S6, S11</xref>).</p>
<fig position="float" id="fig8">
<label>Figure 8</label>
<caption>
<p>Leave-One-Out Analysis Results for Various Outcomes with ALS Exposure. This series illustrates the influence of ALS as an exposure factor on different inflammatory markers, using the leave-one-out methodology to assess the impact of individual SNPs on the overall results. <bold>(A)</bold>: C-C motif chemokine 20 levels as the outcome, with ALS as the exposure; <bold>(B)</bold>: Interleukin-5 levels as the outcome, with ALS as the exposure; <bold>(C)</bold>: Tumor necrosis factor ligand superfamily member 12 levels as the outcome, with ALS as the exposure.</p>
</caption>
<graphic xlink:href="fnagi-16-1367106-g008.tif"/>
</fig>
</sec>
<sec id="sec10">
<label>3.3</label>
<title>Validation group results</title>
<p>We selected three SNP thresholding tool variables (<italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;8</sup>, <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;7</sup>, <italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;6</sup>) and 12 inflammatory proteins as exposures, with ALS as the outcome, for two-sample Mendelian randomization analysis. The clumping conditions are the same as those for the test set. We were surprised to find that, whether in the initial exploration phase or in the validation set, the levels of osteoprotegerin showed significance for sporadic ALS (OR&#x2009;&#x003C;&#x2009;1, PIVW&#x2009;&#x003C;&#x2009;0.05) (<xref ref-type="fig" rid="fig9">Figure 9</xref>) (<xref ref-type="supplementary-material" rid="SM1">Supplementary Tables S2&#x2013;S4</xref>). This result suggests that there may be an association between Osteoprotegerin levels and sporadic ALS, where Osteoprotegerin levels may play a protective role.</p>
<fig position="float" id="fig9">
<label>Figure 9</label>
<caption>
<p>Significant Mendelian Randomization Results of Inflammatory Proteins with ALS Validation Sets (p_ivw&#x2009;&#x003C;&#x2009;0.05 denotes significance). &#x201C;Sporadic&#x201D; denotes a cohort of sporadic ALS, while &#x201C;Mixed&#x201D; refers to a combined cohort of familial and sporadic ALS.</p>
</caption>
<graphic xlink:href="fnagi-16-1367106-g009.tif"/>
</fig>
<p>Another remarkable discovery is the correlation of Tumor Necrosis Factor Ligand Superfamily Member 12 levels with the sporadic ALS validation set across three different SNP threshold groups, with a potential association observed with the mixed ALS set at SNP (<italic>p</italic>&#x2009;&#x003C;&#x2009;5&#x2009;&#x00D7;&#x2009;10<sup>&#x2212;6</sup>) (OR&#x2009;&#x003E;&#x2009;1, <italic>P</italic> IVW&#x2009;&#x003C;&#x2009;0.05) (<xref ref-type="fig" rid="fig9">Figure 9</xref>) (<xref ref-type="supplementary-material" rid="SM1">Supplementary Tables S2&#x2013;S4</xref>). This suggests that an increase in Tumor necrosis factor ligand superfamily member 12 levels may be a risk factor for ALS. However, we observed the opposite causal relationship in the initial GWAS set.</p>
<p>These results suggest complex interactions between ALS and Tumor Necrosis Factor Ligand Superfamily Member 12 levels, possibly involving bidirectional causal relationships.</p>
</sec>
</sec>
<sec sec-type="discussion" id="sec11">
<label>4</label>
<title>Discussion</title>
<p>This study utilized the TSMR approach to explore the potential causal relationship between circulating inflammatory proteins and ALS. Our analysis revealed several significant associations between inflammatory proteins and the risk of ALS, offering new insights into the pathophysiology of ALS and potentially unveiling new therapeutic targets.</p>
<p>In our study, different <italic>p</italic>-value thresholds significantly impacted the results. Lower <italic>p</italic>-value thresholds (e.g., &#x003C; 5.0E&#x2212;08) are commonly employed to ensure robustness of associations, reduce heterogeneity, and enhance the accuracy of the research. However, such stringent criteria might also exclude potentially meaningful associations (<xref ref-type="bibr" rid="ref5">Bottigliengo et al., 2022</xref>; <xref ref-type="bibr" rid="ref9">Chen et al., 2023</xref>; <xref ref-type="bibr" rid="ref24">Liu et al., 2023</xref>; <xref ref-type="bibr" rid="ref33">Ren et al., 2023</xref>). Our analysis indicated that some associations, previously insignificant, became significant when the <italic>p</italic>-value threshold was relaxed, underscoring the importance and complexity of <italic>p</italic>-value selection in research on the relationship between inflammatory proteins and ALS.</p>
<p>Our study employed both forward and reverse MR analyses, a method that allows for a more comprehensive exploration of the potential causal relationship between inflammatory proteins and ALS (<xref ref-type="bibr" rid="ref30">Perry et al., 2021</xref>; <xref ref-type="bibr" rid="ref18">Huimei Huang et al., 2022</xref>; <xref ref-type="bibr" rid="ref46">Wang et al., 2022</xref>; <xref ref-type="bibr" rid="ref51">Yin et al., 2023</xref>). The forward MR analysis revealed associations between increased levels of specific inflammatory proteins and an increased risk of ALS, whereas the reverse MR analysis provided evidence that an increased risk of ALS could lead to changes in certain inflammatory protein levels. These findings suggest a possible bidirectional causal relationship between inflammatory proteins and ALS, further complicating their interaction.</p>
<p>In our research, multiple inflammatory proteins identified across various <italic>p</italic>-value thresholds showed significant positive results related to ALS risk. For instance, increased levels of ADA were significantly associated with an increased risk of ALS. Previous studies have suggested that ADA may play an important role in neurodegenerative diseases, linked to neuronal damage and inflammatory responses. Allen et al. identified a defect in adenosine to inosine deamination in astrocytes of ALS patients caused by reduced ADA expression. This defect led to increased sensitivity to adenosine-mediated toxicity (<xref ref-type="bibr" rid="ref4">Allen et al., 2019</xref>). Supplementing inosine could reverse motor neuron toxicity observed in co-cultured patient astrocytes (<xref ref-type="bibr" rid="ref3">Allen et al., 2018</xref>). Song et al. explored gene therapy for ALS by upregulating ADAR2 in mouse motor neurons using adeno-associated viral vectors. This treatment prevented progressive motor dysfunction and rescued motor neurons from death by normalizing TDP-43 expression, suggesting a potential gene therapy approach for ALS (<xref ref-type="bibr" rid="ref39">Song and Pan, 2014</xref>).</p>
<p>In summary, this section of the study discusses the significant associations found between changes in Leukemia inhibitory factor receptor and Osteoprotegerin levels and the risk of ALS. It highlights the diverse roles of cytokines, including LIFR, in skeletal muscle physiology and their impact on muscle cell growth, differentiation, metabolism, nerve innervation, and inflammatory cell recruitment to muscle injury sites (<xref ref-type="bibr" rid="ref19">Hunt and White, 2016</xref>). The research also touches on the limited but emerging findings linking AIFR and Osteoprotegerin to ALS, as well as their roles in neuropsychiatric disorders, emphasizing the importance of inflammation and immune mechanisms in these conditions (<xref ref-type="bibr" rid="ref13">Ham et al., 2018</xref>; <xref ref-type="bibr" rid="ref14">Hashioka et al., 2019</xref>; <xref ref-type="bibr" rid="ref29">Novellino et al., 2020</xref>; <xref ref-type="bibr" rid="ref49">Xu et al., 2023</xref>).</p>
<p>Furthermore, the study finds significant correlations between ALS risk and changes in levels of various inflammatory proteins, such as Interleukin-17C, Oncostatin-M, Interleukin-5 levels, SIR2-like protein 2 levels, Neurturin levels, TNF-beta levels and Interleukin-10, under different <italic>p</italic>-value thresholds. Reverse MR analysis suggests that increased ALS risk could lead to changes in certain inflammatory protein levels, such as motif chemokine 20 levels, Tumor necrosis factor ligand superfamily member 12 levels and Interleukin-5 levels. These findings offer new perspectives for research into the roles of these proteins in neuroprotection, neuroregeneration, and inflammation, potentially contributing to understanding and treating ALS and related neuropsychiatric disorders.</p>
<p>In summary, our study, based on GWAS data from European populations, suggests that Osteoprotegerin levels confer a protective effect against sporadic ALS, validated in two datasets. Additionally, we observed a complex bidirectional relationship between Tumor Necrosis Factor Ligand Superfamily Member 12 levels and sporadic ALS. Furthermore, some correlations were found in the GWAS dataset combining Tumor Necrosis Factor Ligand Superfamily Member 12 with familial and sporadic ALS, highlighting the potential complex bidirectional association between Tumor Necrosis Factor Ligand Superfamily Member 12 levels and ALS. Future research can delve into the specific roles of Osteoprotegerin and Tumor Necrosis Factor Ligand Superfamily Member 12 in the pathogenesis of ALS, assess their potential as biomarkers, and explore therapeutic strategies targeting them.</p>
<p>The findings of this study rely on data from the European population, implying that the applicability of its conclusions may have certain limitations. Although these inflammatory proteins show significant associations for some ALS patients within the European population, we must acknowledge that ALS patients in other populations worldwide may exhibit different levels of correlation and significance. Therefore, to comprehensively understand the role of these inflammatory proteins and their differences across diverse populations, future research should focus on collecting and analyzing data from more varied population groups. Such research endeavors will help uncover the population-specific aspects of ALS pathogenesis, thereby laying the groundwork for the discovery of universally applicable therapeutic strategies.</p>
</sec>
<sec sec-type="conclusions" id="sec12">
<label>5</label>
<title>Conclusion</title>
<p>In summary, our study offers new insights into the role of circulating inflammatory proteins in ALS and paves the way for future research and the development of therapeutic strategies. Future research should focus on validating these findings and exploring the relationships between other potential inflammatory proteins and ALS. Furthermore, a deeper investigation into the specific roles of these inflammatory proteins in ALS pathophysiology will be crucial.</p>
</sec>
<sec sec-type="data-availability" id="sec13">
<title>Data availability statement</title>
<p>The original contributions presented in the study are included in the article/<xref ref-type="supplementary-material" rid="SM1">Supplementary material</xref>, further inquiries can be directed to the corresponding author.</p>
</sec>
<sec sec-type="author-contributions" id="sec14">
<title>Author contributions</title>
<p>CX: Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing. XG: Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing. YF: Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing. JS: Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing &#x2013; original draft, Writing &#x2013; review &#x0026; editing.</p>
</sec>
</body>
<back>
<sec sec-type="funding-information" id="sec15">
<title>Funding</title>
<p>The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. This work was supported by basic research in medical application and applied research in medical innovation project (SKY2023101) and Suzhou Science and Technology Bureau - Key Technology (SS202089 and SZFCXK202107).</p>
</sec>
<ack>
<p>In the vastness of space and immensity of time, it is my joy to spend a planet and an epoch with her.</p>
</ack>
<sec sec-type="COI-statement" id="sec16">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
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<title>Publisher&#x2019;s note</title>
<p>All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.</p>
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<sec sec-type="supplementary-material" id="sec17">
<title>Supplementary material</title>
<p>The Supplementary material for this article can be found online at: <ext-link xlink:href="https://www.frontiersin.org/articles/10.3389/fnagi.2024.1367106/full#supplementary-material" ext-link-type="uri">https://www.frontiersin.org/articles/10.3389/fnagi.2024.1367106/full#supplementary-material</ext-link></p>
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<p><sup>1</sup><ext-link xlink:href="https://www.ebi.ac.uk/gwas/studies/GCST90027164" ext-link-type="uri">https://www.ebi.ac.uk/gwas/studies/GCST90027164</ext-link></p>
</fn>
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<p><sup>2</sup><ext-link xlink:href="https://www.r-project.org/" ext-link-type="uri">https://www.r-project.org/</ext-link></p>
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